Query 026067
Match_columns 244
No_of_seqs 138 out of 1112
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_L Ribosomal protein L13; 100.0 6.5E-87 2.2E-91 595.4 7.8 235 1-244 1-250 (250)
2 3r8s_J 50S ribosomal protein L 100.0 2E-64 7E-69 420.2 12.0 142 91-235 1-142 (142)
3 3v2d_N 50S ribosomal protein L 100.0 3.6E-64 1.2E-68 417.9 12.0 140 91-235 1-140 (140)
4 2ftc_H L13MT, MRP-L13, 39S rib 100.0 5.3E-64 1.8E-68 420.1 13.0 147 91-237 1-147 (148)
5 2zjr_G 50S ribosomal protein L 100.0 1.1E-62 3.7E-67 421.3 12.1 149 85-238 23-171 (174)
6 3f1f_N 50S ribosomal protein L 100.0 6.8E-63 2.3E-67 418.8 8.9 140 91-235 24-163 (163)
7 1j3a_A 50S ribosomal protein L 100.0 6.8E-49 2.3E-53 326.4 6.1 118 108-238 1-120 (142)
8 4b6a_O 60S ribosomal protein L 100.0 3.2E-46 1.1E-50 325.2 5.8 122 105-238 3-125 (199)
9 1vq8_J 50S ribosomal protein L 100.0 1.2E-45 4.1E-50 308.1 4.6 115 105-238 6-121 (145)
10 4a17_I RPL13A, 60S ribosomal p 100.0 8.8E-44 3E-48 309.7 4.2 121 105-237 2-123 (198)
11 3iz5_K 60S ribosomal protein L 100.0 1.2E-42 4.1E-47 304.1 3.6 119 104-236 7-128 (206)
12 2zkr_j 60S ribosomal protein L 100.0 5E-42 1.7E-46 299.6 5.9 113 104-237 2-124 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1E-41 3.5E-46 292.5 3.0 117 109-237 1-118 (178)
14 2wsc_2 LHCA2, type II chloroph 47.6 3.9 0.00013 36.8 0.0 17 1-17 1-17 (269)
15 3koj_A Uncharacterized protein 41.2 14 0.00048 28.6 2.3 29 106-150 52-80 (108)
16 3stb_C RNA-editing complex pro 34.4 44 0.0015 27.6 4.3 32 104-150 83-114 (148)
17 3bbo_4 Ribosomal protein L34; 33.2 9 0.00031 32.0 0.0 10 59-68 86-95 (152)
18 1hzt_A Isopentenyl diphosphate 30.2 21 0.0007 28.3 1.7 45 105-157 3-48 (190)
19 4dam_A Single-stranded DNA-bin 28.2 31 0.001 27.2 2.3 29 106-150 62-90 (128)
20 3bbn_T Ribosomal protein S20; 27.2 14 0.00048 32.2 0.2 26 3-28 5-39 (202)
21 3vdy_A SSB, single-stranded DN 26.5 35 0.0012 25.8 2.3 29 106-150 49-77 (116)
22 3ulp_A Single-strand binding p 24.1 38 0.0013 26.0 2.2 29 106-150 53-82 (124)
23 2vw9_A Single-stranded DNA bin 23.3 43 0.0015 26.3 2.3 28 107-150 49-76 (134)
24 3afp_A Single-stranded DNA-bin 22.4 44 0.0015 27.3 2.3 29 106-150 52-80 (168)
25 1z9f_A Single-strand binding p 22.4 49 0.0017 26.8 2.6 28 107-150 63-90 (153)
26 3lor_A Thiol-disulfide isomera 22.1 56 0.0019 24.0 2.7 27 105-131 121-156 (160)
27 2fkb_A Putative nudix hydrolas 21.8 40 0.0014 26.0 1.9 44 105-157 9-53 (180)
28 1eqq_A Single stranded DNA bin 20.8 49 0.0017 27.4 2.3 29 106-150 53-81 (178)
29 2v1m_A Glutathione peroxidase; 20.7 56 0.0019 24.2 2.5 25 107-131 135-168 (169)
30 1qvc_A Single stranded DNA bin 20.7 51 0.0017 26.2 2.3 29 106-150 52-80 (145)
No 1
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6.5e-87 Score=595.37 Aligned_cols=235 Identities=67% Similarity=1.087 Sum_probs=124.7
Q ss_pred CccccCCceeeecCCCCCCCCCCccccccccccccCCCCccccccccc--CCCCCccccCceEEEeccc-----------
Q 026067 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA--KSTSPLNTKRSFKVRCCQN----------- 67 (244)
Q Consensus 1 ma~~~~~~~~~~~s~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~c~~~----------- 67 (244)
||+++|+|||||||+| ++.++|++++ ..+||+|+.++.. .++.+++++.+++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 71 (250)
T 3bbo_L 1 MATMACASSLTFPSAQ--TQKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE 71 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeccceeccCCC--CCCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence 8999999999999986 4567777776 6689999987553 4446678899999999998
Q ss_pred --cccccCcchhhhhhhcccCCcccceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCC
Q 026067 68 --LSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 145 (244)
Q Consensus 68 --~~~v~~~~r~~~~~~e~~g~~~~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD 145 (244)
+++|||||||||+++|+.|+|+||+||++|++++++.+|+||||||+|++||||||.||++|+|||||+||||+||||
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD 151 (250)
T 3bbo_L 72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA 151 (250)
T ss_dssp ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence 378999999999999999999999999999999777899999999999999999999999999999999999999999
Q ss_pred EEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCc
Q 026067 146 YVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225 (244)
Q Consensus 146 ~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph 225 (244)
+|||||||+|+|||+||.+|.|++|+|||||+|+++++++++++|++||++|||||||||++||++|+|||||+|.+|||
T Consensus 152 ~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh 231 (250)
T 3bbo_L 152 FVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPH 231 (250)
T ss_dssp CCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSC
T ss_pred EEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccccceeeccC
Q 026067 226 EAQQPIELPIRDKRIQKQR 244 (244)
Q Consensus 226 ~aqkp~~l~i~~~ri~~~~ 244 (244)
++|+|++++++++||++|+
T Consensus 232 ~aQkp~~l~ia~k~v~~~~ 250 (250)
T 3bbo_L 232 QAQQPIDLPLRDKRIRVEK 250 (250)
T ss_dssp TTSCC--------------
T ss_pred HHcCCeeechhhheeeccC
Confidence 9999999999999999986
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=2e-64 Score=420.21 Aligned_cols=142 Identities=56% Similarity=0.925 Sum_probs=139.3
Q ss_pred ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (244)
Q Consensus 91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H 170 (244)
|+||++|+++ ++|+||||||+|++||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 77 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHH 77 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEE
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEe
Confidence 5899999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 235 (244)
Q Consensus 171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i 235 (244)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 78 tgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~p~~l~~ 142 (142)
T 3r8s_J 78 TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp CSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGCCEECCC
T ss_pred cCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 3
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=3.6e-64 Score=417.86 Aligned_cols=140 Identities=53% Similarity=0.942 Sum_probs=137.0
Q ss_pred ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (244)
Q Consensus 91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H 170 (244)
|+||++| + ++|+||||||+|++||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 75 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 75 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEE
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEe
Confidence 5899999 6 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 235 (244)
Q Consensus 171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i 235 (244)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 76 tgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~p~~~~~ 140 (140)
T 3v2d_N 76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp CSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGCCEEECC
T ss_pred cccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 4
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=5.3e-64 Score=420.10 Aligned_cols=147 Identities=27% Similarity=0.502 Sum_probs=143.2
Q ss_pred ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (244)
Q Consensus 91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H 170 (244)
|.||++|+.++.+++|+||||||+|++||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 45899999997778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 237 (244)
Q Consensus 171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~ 237 (244)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|++|||++|+|+.+++.+
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~~ 147 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=1.1e-62 Score=421.31 Aligned_cols=149 Identities=47% Similarity=0.745 Sum_probs=138.7
Q ss_pred cCCcccceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccc
Q 026067 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164 (244)
Q Consensus 85 ~g~~~~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~ 164 (244)
++.+++|+||++|+ + +|+||||||+|++||||||.||++|+|||||+|||++||||+|||||||+|++||+||++
T Consensus 23 ~~~~~~m~T~~~k~--~---~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~ 97 (174)
T 2zjr_G 23 LLRSFKVKTYIPKN--D---EQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 97 (174)
T ss_dssp -------CCCCCCC--S---CCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSS
T ss_pred ccccceeeeeccCc--c---cccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhc
Confidence 45666789999998 3 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 026067 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 238 (244)
Q Consensus 165 K~Y~~HtgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~ 238 (244)
|.||+|||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++.+.
T Consensus 98 K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqkp~~l~~~~~ 171 (174)
T 2zjr_G 98 KVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL 171 (174)
T ss_dssp CEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCCC
T ss_pred eEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccCCeEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998654
No 6
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=6.8e-63 Score=418.82 Aligned_cols=140 Identities=53% Similarity=0.942 Sum_probs=135.1
Q ss_pred ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (244)
Q Consensus 91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H 170 (244)
|+||++| + ++|+||||||+|++||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 24 mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~h 98 (163)
T 3f1f_N 24 VKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 98 (163)
T ss_dssp -CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCB
T ss_pred Ccccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEe
Confidence 6899999 5 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 235 (244)
Q Consensus 171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i 235 (244)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 99 tgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 99 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp CSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred cCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998874
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=6.8e-49 Score=326.44 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=103.8
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcc-cCHHHHh
Q 026067 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE-ETFDQLQ 186 (244)
Q Consensus 108 W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~-~t~~~l~ 186 (244)
||||||+||+||||||.||++|+ |||+|||||||+|++||+||++|.||+|+|||||++. .+ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999776 77 9999
Q ss_pred hcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 026067 187 HRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 238 (244)
Q Consensus 187 ~r~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~ 238 (244)
+++|++||++||||||| ||++|+++|+|||||+|.+|||++|+|++++...+
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~ 120 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh
Confidence 99999999999999999 89999999999999999999999999999997664
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=3.2e-46 Score=325.22 Aligned_cols=122 Identities=31% Similarity=0.474 Sum_probs=118.0
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHH
Q 026067 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~ 184 (244)
.++|+||||+|++||||||.||+.|+ .||+|||||||+|.|||+|+.+|.||+|+|||||++..++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 56899999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 026067 185 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 238 (244)
Q Consensus 185 l~~r~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~ 238 (244)
+++++|++||++||||||| ||++|+.+|+||+||+|.+|||++|+++++|....
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~ 125 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALR 125 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBH
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHH
Confidence 9999999999999999999 79999999999999999999999999999986653
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.2e-45 Score=308.14 Aligned_cols=115 Identities=30% Similarity=0.391 Sum_probs=111.0
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHH
Q 026067 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~ 184 (244)
.++||||||+||+||||||.||++|+ |||+|||||||+|++||+|+.+|.||+|++|||| ++++
T Consensus 6 ~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~ 69 (145)
T 1vq8_J 6 FDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGY 69 (145)
T ss_dssp CCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCC
T ss_pred cccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHH
Confidence 67899999999999999999999999 9999999999999999999999999999999998 7899
Q ss_pred HhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 026067 185 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 238 (244)
Q Consensus 185 l~~r~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~ 238 (244)
+++++|++||++||||||| ||++|+++|+|||||+|.+|| |++++++....
T Consensus 70 ~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~ 121 (145)
T 1vq8_J 70 FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL 121 (145)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC
T ss_pred HhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh
Confidence 9999999999999999999 999999999999999999999 89999997653
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=8.8e-44 Score=309.66 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=115.8
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHH
Q 026067 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~ 184 (244)
.++||||||+|++||||||.||++|+ |||+|||||||+|.|||+||.+|.||+|+.++++.+..++++
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~ 69 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGV 69 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCcccc
Confidence 46899999999999999999999999 999999999999999999999999999999999988878899
Q ss_pred HhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067 185 LQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 237 (244)
Q Consensus 185 l~~r~P~~Ilk~AVrGMLPK-n~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~ 237 (244)
+++++|++||++||+||||+ |.+||.+|+|||||+|.+|||++|+.+++|-..
T Consensus 70 ~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al 123 (198)
T 4a17_I 70 QHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDAL 123 (198)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGB
T ss_pred ccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHh
Confidence 99999999999999999995 999999999999999999999999999998665
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=1.2e-42 Score=304.09 Aligned_cols=119 Identities=29% Similarity=0.428 Sum_probs=108.3
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCccc--C
Q 026067 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE--T 181 (244)
Q Consensus 104 ~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~--t 181 (244)
++|+||||||+||+||||||.||++|+ |||+|||||||+|.+||+||++|.||+| |.+..... +
T Consensus 7 f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np~ 72 (206)
T 3iz5_K 7 VCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPS 72 (206)
T ss_dssp CCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSS
T ss_pred cceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCCc
Confidence 689999999999999999999999999 9999999999999999999999999987 44433222 4
Q ss_pred HHHHhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeeccc
Q 026067 182 FDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIR 236 (244)
Q Consensus 182 ~~~l~~r~P~~Ilk~AVrGMLPK-n~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~ 236 (244)
++++++++|++||++||+||||| |.+||++|+|||||+|.+|||++|+.+++|-.
T Consensus 73 ~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~a 128 (206)
T 3iz5_K 73 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 128 (206)
T ss_dssp SCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTB
T ss_pred ccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchH
Confidence 68999999999999999999997 89999999999999999999999997777644
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5e-42 Score=299.63 Aligned_cols=113 Identities=30% Similarity=0.481 Sum_probs=102.0
Q ss_pred ccceEEEEeCCCCCchhhHHHHHH-HHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeee-ecc-------CCC
Q 026067 104 SDKTWYVVDATDKILGRLASTIAI-HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHS-------GRP 174 (244)
Q Consensus 104 ~~r~W~IIDA~gqiLGRLAS~IAk-~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~-~Ht-------gyp 174 (244)
.+++||||||+|++||||||.||+ +|+ ||+|||||||+|.|||+||.+|.|| +|+ +||
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 478999999999999999999999 776 5799999999999999999999999 998 788
Q ss_pred CCCcccCHHHHhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067 175 GGMKEETFDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 237 (244)
Q Consensus 175 Gglk~~t~~~l~~r~P~~Ilk~AVrGMLPK-n~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~ 237 (244)
|+ +++++|++||++||+||||| |.+|+.+|+||+||+|.+|||++|+|+++|-..
T Consensus 69 G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~ 124 (203)
T 2zkr_j 69 GP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124 (203)
T ss_dssp CC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBC
T ss_pred Cc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhh
Confidence 87 68899999999999999998 899999999999999999999999999998554
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1e-41 Score=292.49 Aligned_cols=117 Identities=29% Similarity=0.446 Sum_probs=106.1
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhhc
Q 026067 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 188 (244)
Q Consensus 109 ~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~r 188 (244)
+||||+||+||||||.||++|+ |||+|||||||+|.|||+||++|.||+|..+.+.....+++++++|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999999 9999999999999999999999999999433333333457899999
Q ss_pred ChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067 189 IPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 237 (244)
Q Consensus 189 ~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~ 237 (244)
+|++||++||||||| ||++||.+|+|||||+|.+|||++|++++++-..
T Consensus 69 ~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Al 118 (178)
T 3jyw_M 69 APSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQAL 118 (178)
T ss_dssp STTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSC
T ss_pred CHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHh
Confidence 999999999999999 5999999999999999999999999999998543
No 14
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=47.65 E-value=3.9 Score=36.82 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=0.0
Q ss_pred CccccCCceeeecCCCC
Q 026067 1 MATLCTPTCVIFSSLQS 17 (244)
Q Consensus 1 ma~~~~~~~~~~~s~~~ 17 (244)
||+.|+++++.-.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (269)
T 2wsc_2 1 MASACASSAIAAVAIST 17 (269)
T ss_dssp -----------------
T ss_pred CchhHhhHHHHHhhcCc
Confidence 89999999988555433
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=41.24 E-value=14 Score=28.58 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.|+=|-| -|++|..++++|. .||.|+|-
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~Ve 80 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLE 80 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEE
Confidence 45877766 4789999999998 99998874
No 16
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=34.42 E-value=44 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.3
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 104 ~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
....|+-|=+-| |.||..|.++|. .|+.|+|.
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVe 114 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVT 114 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEE
Confidence 367899999888 999999999998 99998875
No 17
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.16 E-value=9 Score=31.96 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=0.0
Q ss_pred ceEEEecccc
Q 026067 59 SFKVRCCQNL 68 (244)
Q Consensus 59 ~~~v~c~~~~ 68 (244)
+++|+|++..
T Consensus 86 gl~Vr~Gkr~ 95 (152)
T 3bbo_4 86 RFVVRAGKAA 95 (152)
T ss_dssp ----------
T ss_pred ceEEEccCcc
Confidence 6888887753
No 18
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=30.18 E-value=21 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=8.8
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEec-ceeee
Q 026067 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA-EKVAV 157 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINA-ekI~v 157 (244)
+..|.|+|..|+++|...-..+..-.| .++. +-.|+|+|. .+|.+
T Consensus 3 ~E~~~v~d~~~~~~g~~~r~~~~~~~~----~~~~----~v~~~i~~~~g~vLl 48 (190)
T 1hzt_A 3 TEHVILLNAQGVPTGTLEKYAAHTADT----RLHL----AFSSWLFNAKGQLLV 48 (190)
T ss_dssp --------------------------------CEE----CEEEEEECTTCCEEE
T ss_pred ceEEEEECCCCCEeeeEEHhhhcccCC----ceEE----EEEEEEEcCCCEEEE
Confidence 356899999999999765554442222 1222 345777774 34554
No 19
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=28.20 E-value=31 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.|+=|-|- |++|..++++|. .||.|+|.
T Consensus 62 t~w~~v~~w----g~~Ae~~~~~l~------------KG~~V~Ve 90 (128)
T 4dam_A 62 TNFFTVWAN----RQLATNASGSLA------------VGDPVVVQ 90 (128)
T ss_dssp EEEEEEEEE----HHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEEE----cHHHHHHHHhcC------------CCCEEEEE
Confidence 357777664 789999999998 99999886
No 20
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.22 E-value=14 Score=32.19 Aligned_cols=26 Identities=35% Similarity=0.591 Sum_probs=0.0
Q ss_pred cccCCceeeecC---------CCCCCCCCCccccc
Q 026067 3 TLCTPTCVIFSS---------LQSSSSSSSFKTLN 28 (244)
Q Consensus 3 ~~~~~~~~~~~s---------~~~~~~~~sf~~~~ 28 (244)
..|.++|+++|| .++|+|++||++-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (202)
T 3bbn_T 5 VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNRR 39 (202)
T ss_dssp -----------------------------------
T ss_pred hhhhhhhhcCchhhheeeecccccCCcccccCCcc
Confidence 457888988886 34556666766655
No 21
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=26.53 E-value=35 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.|+=|-| -|++|..++++|. .||.|.|.
T Consensus 49 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 77 (116)
T 3vdy_A 49 ADYVNCTL----WRKTAENTALYCQ------------KGSLVGVS 77 (116)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ECHHHHHHHHhCC------------CCCEEEEE
Confidence 35755544 4789999999988 88888775
No 22
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=24.07 E-value=38 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCch-hhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLG-RLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.|+=|-|- | ++|..++++|. .||.|.|.
T Consensus 53 t~~~~v~~w----g~~~Ae~~~~~l~------------KG~~V~V~ 82 (124)
T 3ulp_A 53 TDWHRIVVY----DQNIVDLIDKYLR------------KGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEC----CHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEEE----EchHHHHHHhhcC------------CCCEEEEE
Confidence 357766664 5 79999999998 99998875
No 23
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=23.31 E-value=43 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
.|+=|-| -|++|..++++|. .||.|.|.
T Consensus 49 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 76 (134)
T 2vw9_A 49 CFIDARL----FGRTAEIANQYLS------------KGSSVLIE 76 (134)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhCC------------CCCEEEEE
Confidence 4666655 4789999999987 77776664
No 24
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.39 E-value=44 Score=27.35 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.||=|-+- |++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~w----g~~Ae~~~~~l~------------KG~~V~Ve 80 (168)
T 3afp_A 52 ALFLRCNIW----REAAENVAESLT------------RGARVIVT 80 (168)
T ss_dssp CEEEEEEEE----HHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEEe----hHHHHHHHHhCC------------CCCEEEEE
Confidence 357766554 789999999998 88888876
No 25
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=22.36 E-value=49 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
.|+=|-| -|++|..++++|. .|+.|+|.
T Consensus 63 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 90 (153)
T 1z9f_A 63 DFFRIVT----FGRLAEFARTYLT------------KGRLVLVE 90 (153)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----ECHHHHHHHhhCC------------CCCEEEEE
Confidence 4766655 4789999999998 89998875
No 26
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=22.13 E-value=56 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=20.7
Q ss_pred cceEEEEeCCCCCchh---------hHHHHHHHHhc
Q 026067 105 DKTWYVVDATDKILGR---------LASTIAIHIRG 131 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGR---------LAS~IAk~LrG 131 (244)
-..++|||.+|+++.+ |...|.++|..
T Consensus 121 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 121 TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 4668999999999877 66667776653
No 27
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=21.82 E-value=40 Score=25.98 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.5
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026067 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (244)
Q Consensus 105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAe-kI~v 157 (244)
...|-|+|..|+.+|.+-...++... .++ .+-.|+|+|.+ +|.+
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~-----~~~----~~~~v~i~~~~~~vLl 53 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQC-----LRH----RATYIVVHDGMGKILV 53 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHT-----CCE----EEEEEEEECSSSCEEE
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccC-----cee----eEEEEEEECCCCEEEE
Confidence 45799999999999998766554321 121 23356777754 4554
No 28
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=20.81 E-value=49 Score=27.40 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.||=|-+ .|++|..++++|. .||.|+|.
T Consensus 53 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 81 (178)
T 1eqq_A 53 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 81 (178)
T ss_dssp EEEEEEEE----CHHHHHHHHHHCC------------TTCEEEEC
T ss_pred cEEEEEEE----ccHHHHHHHHhcC------------CCCEEEEE
Confidence 35776665 4689999999987 78777764
No 29
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=20.75 E-value=56 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCchh---------hHHHHHHHHhc
Q 026067 107 TWYVVDATDKILGR---------LASTIAIHIRG 131 (244)
Q Consensus 107 ~W~IIDA~gqiLGR---------LAS~IAk~LrG 131 (244)
..+|||.+|+++++ |...|.++|.+
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 168 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK 168 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 68999999999876 44555555543
No 30
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=20.71 E-value=51 Score=26.18 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (244)
Q Consensus 106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI 150 (244)
-.||=|-|- |++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~w----g~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 52 TEWHRVVLF----GKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp CEEEEEEEE----THHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEEe----hHHHHHHHHhcC------------CCCEEEEE
Confidence 457777664 579999999987 78777764
Done!