RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026067
(244 letters)
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 168 bits (427), Expect = 6e-54
Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PK ++ W VVDA+ LGRLA+ IA IRGK+ +TP++ G +V+V+NA
Sbjct: 2 TYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINA 56
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
+VA++GKK K+Y R++G GG+K ET + + PER+IEHAV GMLPKGR GR +
Sbjct: 57 AQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMH 116
Query: 213 THLKVYKGPNHPHEAQQPIELPIRD 237
T LKVY G HPH AQ+P L +
Sbjct: 117 TRLKVYAGETHPHSAQKPQVLKTQP 141
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 158 bits (400), Expect = 5e-50
Identities = 78/141 (55%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ K + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA
Sbjct: 3 TFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNA 59
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F
Sbjct: 60 DKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMF 119
Query: 213 THLKVYKGPNHPHEAQQPIEL 233
LKVY G H H AQQP L
Sbjct: 120 RKLKVYAGNEHNHAAQQPQVL 140
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 157 bits (398), Expect = 1e-49
Identities = 74/141 (52%), Positives = 101/141 (71%), Gaps = 5/141 (3%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PK + W ++DA K LGRLA+ IA +RGK+ +TP+V MG +V+VVNA
Sbjct: 3 TYVPKQVE-----PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNA 57
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
+K+ V+GKK QKIY R+SG PGG+K+ +++ PER++EHAV+GMLPKG LGR LF
Sbjct: 58 DKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLF 117
Query: 213 THLKVYKGPNHPHEAQQPIEL 233
LKVY GP+HPH+AQ+P +L
Sbjct: 118 KRLKVYAGPDHPHQAQRPEKL 138
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 117 bits (294), Expect = 6e-34
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+VDA D I+GR+AS +A G V VVNAE+ ++G++
Sbjct: 2 EFDADVIVDARDCIMGRVASQVAEQ------------ALDGETVAVVNAERAVITGREEQ 49
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPN 222
G + + P+ I + +RGMLP K + GRE F ++VY G
Sbjct: 50 IVEKYEKRVDIGNDNGYFYPKR----PDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 105
Query: 223 HPHEAQQPIELPIRDKRIQK 242
+ + + + K
Sbjct: 106 YDEDGEVLDGTSLDRLSNIK 125
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 109 bits (273), Expect = 8e-31
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 110 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 169
+++A ILGRLAS +A + G V++VNAEK ++G + +
Sbjct: 3 IINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKYK 50
Query: 170 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 228
+ + + I+ +RGMLP K GR+ F LKVY G + +
Sbjct: 51 QRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDK 110
Query: 229 QPIELPIRD-KRIQKQR 244
Q + R+ + +
Sbjct: 111 QLETIVEAHVSRLSRPK 127
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 73
Score = 28.2 bits (63), Expect = 0.19
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 210
++ + R+ RPG +EE + R+P R+ + + +GRL
Sbjct: 15 EEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 61
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
subtilis [TaxId: 1423]}
Length = 98
Score = 28.2 bits (63), Expect = 0.31
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 177 MKEETFDQLQHRIPERIIEHAVRGMLPKGRLGR------ELFTHLKVYKGPNHPHEAQQP 230
M ++T +Q + I + P + R EL + G +
Sbjct: 1 MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDD 60
Query: 231 IEL 233
+
Sbjct: 61 KSM 63
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 24.6 bits (54), Expect = 5.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 204 KGRLGRELFTHLKVYKGPNHPHEAQQPIEL 233
K R G + HLKV+K P + + + L
Sbjct: 56 KVRAGDNKYMHLKVFKS--LPGQ-NEDLVL 82
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 24.7 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 204 KGRLGRELFTHLKVYKGPNHPHEAQQPIEL 233
K +G E F HL+V++ PHE +P+ L
Sbjct: 56 KVHVGDEDFVHLRVFQS--LPHE-NKPLTL 82
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 25.5 bits (55), Expect = 6.1
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 62 VRCCQNLSLVPDNQRWMFEQSEVNGPDIWNN---TWYPKAADHRHSDKTWYVVDATDKIL 118
V N P+ + + + PDI N + ++ +D L
Sbjct: 133 VVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNAL 192
Query: 119 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKR 162
++ + K Y + AY++ + ++VA + KKR
Sbjct: 193 EKMMKGAFNDVM-KVKEKYNVDMRTAAYILAI--DRVAYATKKR 233
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 25.7 bits (55), Expect = 6.4
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 5 CTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGF 43
P + Q SS+ ++ L G + + + G
Sbjct: 44 AAPHPFLHRYYQRQLSST-YRDLRKGVYVPYTQGKWEGE 81
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 25.0 bits (54), Expect = 9.2
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 174 PGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGR 209
P + + R+ E A + KG L R
Sbjct: 187 PYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLR 222
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,213
Number of extensions: 40036
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 14
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)