Query 026068
Match_columns 244
No_of_seqs 145 out of 188
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.3 0.0083 2.8E-07 41.5 2.3 37 29-69 10-48 (64)
2 3ddt_A E3 ubiquitin-protein li 95.2 0.011 3.7E-07 39.2 2.5 39 27-69 6-46 (48)
3 2yvr_A Transcription intermedi 95.1 0.0081 2.8E-07 39.9 1.8 37 29-69 8-45 (50)
4 1fre_A Nuclear factor XNF7; zi 93.9 0.035 1.2E-06 35.4 2.5 35 29-68 5-41 (42)
5 2did_A Tripartite motif protei 93.6 0.037 1.3E-06 37.1 2.4 36 29-69 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.2 0.078 2.7E-06 36.7 2.4 36 29-69 16-53 (59)
7 2dja_A Midline-2; tripartite m 91.9 0.054 1.8E-06 39.2 1.4 38 29-70 20-59 (84)
8 2csv_A Tripartite motif protei 91.8 0.068 2.3E-06 37.9 1.8 36 29-69 20-56 (72)
9 2jun_A Midline-1; B-BOX, TRIM, 90.3 0.093 3.2E-06 38.8 1.4 38 28-69 60-99 (101)
10 2egm_A Tripartite motif-contai 89.8 0.05 1.7E-06 37.5 -0.5 35 29-68 20-56 (57)
11 2w0t_A Lethal(3)malignant brai 84.7 0.17 5.9E-06 34.4 -0.1 25 116-140 4-34 (43)
12 2das_A Zinc finger MYM-type pr 82.1 0.73 2.5E-05 33.5 2.3 31 111-141 13-53 (62)
13 2l8e_A Polyhomeotic-like prote 65.5 0.79 2.7E-05 31.6 -1.1 24 118-141 18-46 (49)
14 1lv3_A Hypothetical protein YA 62.3 1.6 5.6E-05 32.1 0.1 29 118-146 9-42 (68)
15 3ny3_A E3 ubiquitin-protein li 48.4 9.3 0.00032 28.1 2.2 30 37-66 12-46 (75)
16 3nis_A E3 ubiquitin-protein li 45.3 11 0.00039 28.2 2.2 30 37-66 16-50 (82)
17 2hiy_A Hypothetical protein; C 43.9 7.6 0.00026 32.5 1.2 33 75-108 19-54 (183)
18 2jun_A Midline-1; B-BOX, TRIM, 41.4 11 0.00038 27.4 1.7 25 38-63 14-39 (101)
19 1tot_A CREB-binding protein; z 33.0 20 0.00069 24.3 1.8 27 43-70 20-48 (52)
20 2fc7_A ZZZ3 protein; structure 26.9 30 0.001 25.5 2.0 30 43-72 37-76 (82)
21 2yqq_A Zinc finger HIT domain- 24.9 26 0.00089 24.6 1.2 23 118-141 12-40 (56)
22 2dip_A Zinc finger SWIM domain 23.0 17 0.00059 27.8 -0.0 29 43-71 47-77 (98)
23 2yqp_A Probable ATP-dependent 21.7 39 0.0013 24.3 1.6 28 118-145 19-51 (60)
24 2ffw_A Midline-1; B-BOX, ring 21.7 37 0.0013 24.3 1.5 24 39-63 42-66 (78)
25 2nrr_A Uvrabc system protein C 21.3 15 0.00051 30.8 -0.8 27 85-111 21-47 (159)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.30 E-value=0.0083 Score=41.49 Aligned_cols=37 Identities=35% Similarity=0.758 Sum_probs=29.5
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 69 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 69 (244)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 10 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred cCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence 5999954 247899999997 89999963 7999976654
No 2
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.19 E-value=0.011 Score=39.15 Aligned_cols=39 Identities=33% Similarity=0.679 Sum_probs=30.5
Q ss_pred CCCCccCCCCCCCCcceecccCCCCcCCcchh-c-CCCCCceeEE
Q 026068 27 FIPCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQI 69 (244)
Q Consensus 27 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQI 69 (244)
...|..|.. -..++||.+|.. .+|..|. . .|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence 346999963 236799999987 8999996 3 7999988764
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.14 E-value=0.0081 Score=39.88 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=29.2
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc-CCCCCceeEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 69 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 69 (244)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++.|
T Consensus 8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 5999954 347899999987 89999964 7889877654
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=93.86 E-value=0.035 Score=35.45 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.3
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 68 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 68 (244)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 588895 247799999987 89999965 799998754
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.64 E-value=0.037 Score=37.12 Aligned_cols=36 Identities=33% Similarity=0.729 Sum_probs=29.4
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 69 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 69 (244)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 599995 347799999987 89999964 7999987655
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.17 E-value=0.078 Score=36.73 Aligned_cols=36 Identities=25% Similarity=0.614 Sum_probs=29.7
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 69 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 69 (244)
.|..|.. ...+||.+|.. .+|..|.. .|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5999953 47799999987 89999964 7999988765
No 7
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=91.89 E-value=0.054 Score=39.25 Aligned_cols=38 Identities=29% Similarity=0.804 Sum_probs=30.0
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeEEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR 70 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 70 (244)
.|..|.. -..++||.+|.. .+|..|.. .|++|+++-|-
T Consensus 20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHH
Confidence 5999953 237899999987 89999964 79999876653
No 8
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.83 E-value=0.068 Score=37.94 Aligned_cols=36 Identities=33% Similarity=0.838 Sum_probs=28.9
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc-CCCCCceeEE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 69 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 69 (244)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence 699994 347799999987 89999965 7888876654
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.30 E-value=0.093 Score=38.83 Aligned_cols=38 Identities=32% Similarity=0.763 Sum_probs=29.7
Q ss_pred CCCccCCCCCCCCcceecccCCCCcCCcchh--cCCCCCceeEE
Q 026068 28 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI 69 (244)
Q Consensus 28 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI 69 (244)
..|..|.. ...++||.+|.. .+|..|. ..|++|+++.|
T Consensus 60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence 36999953 237899999987 8999996 47999987543
No 10
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.76 E-value=0.05 Score=37.55 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCccCCCCCCCCcceecccCCCCcCCcchhc--CCCCCceeE
Q 026068 29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 68 (244)
Q Consensus 29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 68 (244)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 599994 347799999987 89999964 799998764
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=84.69 E-value=0.17 Score=34.37 Aligned_cols=25 Identities=32% Similarity=0.781 Sum_probs=18.4
Q ss_pred CCCCcccccccc-cCC-----CCeeeeeccc
Q 026068 116 GVTNTCEICCRS-LLD-----SFRFCSLGCK 140 (244)
Q Consensus 116 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK 140 (244)
+....||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 333 4599999994
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=82.10 E-value=0.73 Score=33.51 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.0
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeecccc
Q 026068 111 PRPGKGVTNTCEICCRSLLD----------SFRFCSLGCKL 141 (244)
Q Consensus 111 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv 141 (244)
.++.+...-+|+.|.+.|+. +-.|||..|-.
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 55667788899999999973 35899999953
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=65.47 E-value=0.79 Score=31.60 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=19.1
Q ss_pred CCcccccccccCC-----CCeeeeecccc
Q 026068 118 TNTCEICCRSLLD-----SFRFCSLGCKL 141 (244)
Q Consensus 118 ~~~Ce~C~R~L~D-----~~rFCSL~CKv 141 (244)
..+|+.|++.+.. +-+|||..|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3479999999863 25999999963
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=62.31 E-value=1.6 Score=32.07 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=22.3
Q ss_pred CCcccccccccC-----CCCeeeeeccccCeeec
Q 026068 118 TNTCEICCRSLL-----DSFRFCSLGCKLGAMKR 146 (244)
Q Consensus 118 ~~~Ce~C~R~L~-----D~~rFCSL~CKv~~~~~ 146 (244)
...|-+|++... .-..|||-.||...+.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 347999999984 23599999999766553
No 15
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=48.41 E-value=9.3 Score=28.11 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=22.7
Q ss_pred CCCCcceecccCCCC---cCCcchhc--CCCCCce
Q 026068 37 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 66 (244)
Q Consensus 37 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 66 (244)
+++|-...|.+|..+ ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 468888899999865 46667744 6999865
No 16
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=45.27 E-value=11 Score=28.17 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCCCcceecccCCCC---cCCcchhc--CCCCCce
Q 026068 37 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 66 (244)
Q Consensus 37 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 66 (244)
.++|--..|.+|..+ +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 467888889999875 46677744 6999865
No 17
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=43.91 E-value=7.6 Score=32.48 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.3
Q ss_pred cceeeecchhhh---hcccceeeEEECCceEEEeeCC
Q 026068 75 HNVVRVNEIQKF---IDISCVQTYIINSAKIVFLNER 108 (244)
Q Consensus 75 hdVVRv~DIqkl---lD~S~IQtYvINsakVVFLn~R 108 (244)
++-|.+.|+..+ +-..+|+|| |||.-|||--..
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 345667777775 678999999 899999996443
No 18
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=41.38 E-value=11 Score=27.37 Aligned_cols=25 Identities=24% Similarity=0.705 Sum_probs=21.0
Q ss_pred CCCcceecccCCCCcCCcchhcC-CCC
Q 026068 38 KSECNMFCLDCMGNAFCSYCLIN-HKD 63 (244)
Q Consensus 38 knE~N~FCldC~~~~~C~~Cl~~-H~~ 63 (244)
+.+...+|++|.. .||..|+.. |..
T Consensus 14 ~~~av~~C~~C~~-~~C~~Cl~~~h~~ 39 (101)
T 2jun_A 14 AQDAVKTCVTCEV-SYCDECLKATHPN 39 (101)
T ss_dssp CCBCCEEETTTTE-EECHHHHHHHSCS
T ss_pred CCCceEECCcCCh-HHhHHHCHHHhcc
Confidence 4567899999987 899999996 874
No 19
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.98 E-value=20 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.647 Sum_probs=21.6
Q ss_pred eecccCCCCcCCcchhc--CCCCCceeEEE
Q 026068 43 MFCLDCMGNAFCSYCLI--NHKDHRVVQIR 70 (244)
Q Consensus 43 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 70 (244)
+-|..|..--||..|.. .| .|+.++|.
T Consensus 20 ~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 20 WHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred EEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 56999987679999965 56 79888874
No 20
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.94 E-value=30 Score=25.51 Aligned_cols=30 Identities=40% Similarity=0.731 Sum_probs=22.0
Q ss_pred eecccCCC---CcCCcchhc------CC-CCCceeEEEec
Q 026068 43 MFCLDCMG---NAFCSYCLI------NH-KDHRVVQIRRS 72 (244)
Q Consensus 43 ~FCldC~~---~~~C~~Cl~------~H-~~HrvlQIRRs 72 (244)
+-|+.|.. --||..|.. .| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 45999986 569999953 46 57888887653
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.88 E-value=26 Score=24.60 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.5
Q ss_pred CCcccccccccCC------CCeeeeecccc
Q 026068 118 TNTCEICCRSLLD------SFRFCSLGCKL 141 (244)
Q Consensus 118 ~~~Ce~C~R~L~D------~~rFCSL~CKv 141 (244)
...|.+|+. ..- ..+||||.|--
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k 40 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCFR 40 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHHH
Confidence 346989988 321 47999999953
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.97 E-value=17 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.7
Q ss_pred eecccCCCCcCCcchhc--CCCCCceeEEEe
Q 026068 43 MFCLDCMGNAFCSYCLI--NHKDHRVVQIRR 71 (244)
Q Consensus 43 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR 71 (244)
+-|+.|..--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 34888877679999955 577888777654
No 23
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.73 E-value=39 Score=24.28 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCccccccccc---CC--CCeeeeeccccCeee
Q 026068 118 TNTCEICCRSL---LD--SFRFCSLGCKLGAMK 145 (244)
Q Consensus 118 ~~~Ce~C~R~L---~D--~~rFCSL~CKv~~~~ 145 (244)
.+.|-+|+|-= -| .-+-|||.||-..+.
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l~ 51 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHLL 51 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHHH
Confidence 45699999854 23 479999999976653
No 24
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.65 E-value=37 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=20.4
Q ss_pred CCcceecccCCCCcCCcchhcC-CCC
Q 026068 39 SECNMFCLDCMGNAFCSYCLIN-HKD 63 (244)
Q Consensus 39 nE~N~FCldC~~~~~C~~Cl~~-H~~ 63 (244)
.+-...|+.|.. .+|..|+.. |..
T Consensus 42 ~~A~ksCl~C~~-s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 42 QDAVKTCVTCEV-SYCDECLKATHPN 66 (78)
T ss_dssp CBCCEEETTTTE-EECHHHHHHHSCC
T ss_pred CCCeeEccCccc-hhhhhhhHhhcCC
Confidence 567789999997 899999996 854
No 25
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=21.35 E-value=15 Score=30.79 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=21.2
Q ss_pred hhhcccceeeEEECCceEEEeeCCCCC
Q 026068 85 KFIDISCVQTYIINSAKIVFLNERPQP 111 (244)
Q Consensus 85 kllD~S~IQtYvINsakVVFLn~RPq~ 111 (244)
+.||+|.||.--.-++-|||-+..|..
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 459999999999999999999998874
Done!