Query 026069
Match_columns 244
No_of_seqs 113 out of 403
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 1.1E-52 2.4E-57 366.9 14.7 202 5-214 8-209 (220)
2 PF03227 GILT: Gamma interfero 100.0 3.6E-37 7.7E-42 242.5 8.0 107 42-151 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 99.0 3.2E-09 7E-14 85.0 11.9 149 37-206 2-152 (154)
4 PF13462 Thioredoxin_4: Thiore 98.8 1.7E-08 3.7E-13 82.1 8.6 153 32-207 4-160 (162)
5 cd03019 DsbA_DsbA DsbA family, 98.8 4.7E-08 1E-12 80.8 10.2 136 39-196 14-154 (178)
6 PRK10954 periplasmic protein d 98.4 2.6E-06 5.7E-11 73.7 11.5 141 38-196 35-178 (207)
7 cd03024 DsbA_FrnE DsbA family, 97.9 0.00017 3.6E-09 61.0 12.1 159 44-207 1-200 (201)
8 cd03025 DsbA_FrnE_like DsbA fa 97.6 0.00034 7.3E-09 58.6 9.0 148 42-194 1-178 (193)
9 PF01323 DSBA: DSBA-like thior 97.6 0.00021 4.5E-09 59.7 7.4 157 43-206 1-191 (193)
10 PF13743 Thioredoxin_5: Thiore 97.5 0.00058 1.3E-08 57.9 8.9 143 46-193 2-155 (176)
11 cd03022 DsbA_HCCA_Iso DsbA fam 97.5 0.0015 3.3E-08 54.5 10.8 73 122-196 101-178 (192)
12 COG1651 DsbG Protein-disulfide 97.3 0.0024 5.2E-08 55.9 10.3 157 32-207 76-239 (244)
13 COG2761 FrnE Predicted dithiol 96.7 0.0095 2.1E-07 52.8 8.7 170 38-212 2-214 (225)
14 cd02972 DsbA_family DsbA famil 96.2 0.013 2.9E-07 42.2 5.7 41 44-87 1-41 (98)
15 PRK10877 protein disulfide iso 95.6 0.11 2.4E-06 46.0 10.0 46 35-86 102-147 (232)
16 PRK11657 dsbG disulfide isomer 93.2 0.18 4E-06 45.1 5.6 47 35-86 112-158 (251)
17 PF14595 Thioredoxin_9: Thiore 88.2 0.66 1.4E-05 37.5 3.9 43 37-84 38-81 (129)
18 cd03020 DsbA_DsbC_DsbG DsbA fa 87.1 1.1 2.5E-05 37.9 4.9 45 35-86 72-116 (197)
19 cd03021 DsbA_GSTK DsbA family, 84.9 1.5 3.2E-05 37.6 4.5 49 143-193 136-187 (209)
20 cd02973 TRX_GRX_like Thioredox 82.7 2.6 5.6E-05 28.9 4.2 17 42-58 1-17 (67)
21 TIGR00411 redox_disulf_1 small 82.4 2.8 6.1E-05 29.6 4.4 26 42-68 1-26 (82)
22 KOG2501 Thioredoxin, nucleored 76.6 1.4 2.9E-05 37.2 1.4 61 39-102 32-94 (157)
23 TIGR02189 GlrX-like_plant Glut 74.8 9.2 0.0002 29.2 5.5 50 142-197 24-73 (99)
24 PF13905 Thioredoxin_8: Thiore 73.1 11 0.00024 27.3 5.5 41 40-83 1-43 (95)
25 cd03026 AhpF_NTD_C TRX-GRX-lik 71.6 8.6 0.00019 28.8 4.6 42 37-82 9-50 (89)
26 PF13098 Thioredoxin_2: Thiore 67.1 8.8 0.00019 28.8 3.9 28 38-66 3-30 (112)
27 KOG1752 Glutaredoxin and relat 65.3 11 0.00023 29.6 4.0 31 162-197 49-79 (104)
28 cd03027 GRX_DEP Glutaredoxin ( 65.0 15 0.00032 25.8 4.5 47 142-197 17-63 (73)
29 TIGR02190 GlrX-dom Glutaredoxi 62.7 9.2 0.0002 27.5 3.1 22 37-58 3-24 (79)
30 TIGR02180 GRX_euk Glutaredoxin 61.8 8.6 0.00019 27.1 2.8 16 44-59 1-16 (84)
31 PRK11200 grxA glutaredoxin 1; 61.6 9.6 0.00021 27.7 3.0 15 183-197 56-70 (85)
32 PF00462 Glutaredoxin: Glutare 61.3 7.9 0.00017 26.1 2.4 15 44-58 1-15 (60)
33 cd02949 TRX_NTR TRX domain, no 60.5 26 0.00056 25.8 5.3 33 39-74 12-44 (97)
34 PF13728 TraF: F plasmid trans 60.4 7.9 0.00017 33.9 2.8 41 37-84 117-157 (215)
35 TIGR02200 GlrX_actino Glutared 58.9 8.9 0.00019 26.5 2.4 16 43-58 1-16 (77)
36 cd02066 GRX_family Glutaredoxi 58.7 9.3 0.0002 25.5 2.4 17 43-59 1-17 (72)
37 PRK13728 conjugal transfer pro 56.8 9.2 0.0002 32.9 2.5 34 44-84 73-106 (181)
38 cd03419 GRX_GRXh_1_2_like Glut 56.6 11 0.00023 26.6 2.5 17 43-59 1-17 (82)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 56.1 26 0.00057 25.4 4.7 38 40-80 18-55 (104)
40 PHA03050 glutaredoxin; Provisi 55.0 23 0.0005 27.5 4.3 28 165-197 54-81 (108)
41 cd03418 GRX_GRXb_1_3_like Glut 54.5 12 0.00025 26.1 2.4 16 43-58 1-16 (75)
42 PRK13703 conjugal pilus assemb 53.5 9.6 0.00021 34.4 2.2 38 40-84 143-180 (248)
43 COG4545 Glutaredoxin-related p 52.9 9.2 0.0002 28.7 1.6 15 45-59 5-19 (85)
44 TIGR02739 TraF type-F conjugat 52.0 11 0.00023 34.3 2.2 39 39-84 149-187 (256)
45 PRK11200 grxA glutaredoxin 1; 50.8 28 0.0006 25.2 4.0 22 43-65 2-23 (85)
46 cd03028 GRX_PICOT_like Glutare 50.1 53 0.0011 24.2 5.5 47 142-197 29-75 (90)
47 TIGR02189 GlrX-like_plant Glut 47.9 16 0.00035 27.8 2.4 16 43-58 9-24 (99)
48 cd01659 TRX_superfamily Thiore 47.7 37 0.00079 20.7 3.8 35 44-82 1-35 (69)
49 TIGR01295 PedC_BrcD bacterioci 47.6 15 0.00032 29.0 2.2 20 40-59 23-42 (122)
50 KOG3425 Uncharacterized conser 47.6 27 0.00058 28.4 3.6 36 49-87 42-77 (128)
51 PHA03050 glutaredoxin; Provisi 46.8 17 0.00037 28.3 2.4 16 43-58 14-29 (108)
52 cd03027 GRX_DEP Glutaredoxin ( 46.5 16 0.00034 25.6 2.0 16 43-58 2-17 (73)
53 TIGR01126 pdi_dom protein disu 46.1 41 0.00088 24.2 4.3 27 39-66 12-38 (102)
54 cd02962 TMX2 TMX2 family; comp 45.8 41 0.0009 27.8 4.7 21 39-59 46-66 (152)
55 PRK10824 glutaredoxin-4; Provi 45.5 86 0.0019 24.9 6.3 47 142-197 36-82 (115)
56 COG0695 GrxC Glutaredoxin and 45.4 20 0.00044 26.2 2.5 16 182-197 50-65 (80)
57 TIGR02181 GRX_bact Glutaredoxi 45.2 18 0.00038 25.6 2.1 15 44-58 1-15 (79)
58 cd02961 PDI_a_family Protein D 45.0 61 0.0013 22.7 5.0 28 41-69 16-43 (101)
59 PRK15317 alkyl hydroperoxide r 44.3 36 0.00079 33.2 4.8 60 18-81 91-153 (517)
60 PF11287 DUF3088: Protein of u 44.0 13 0.00029 29.6 1.4 34 50-87 22-55 (112)
61 cd03001 PDI_a_P5 PDIa family, 43.9 62 0.0013 23.4 5.0 28 40-68 18-45 (103)
62 cd02976 NrdH NrdH-redoxin (Nrd 43.4 22 0.00048 23.8 2.3 16 43-58 1-16 (73)
63 cd03029 GRX_hybridPRX5 Glutare 43.2 26 0.00057 24.3 2.7 16 43-58 2-17 (72)
64 PRK03147 thiol-disulfide oxido 42.8 92 0.002 25.0 6.3 30 39-69 60-89 (173)
65 PRK09381 trxA thioredoxin; Pro 42.2 71 0.0015 23.7 5.2 29 40-69 21-49 (109)
66 TIGR02196 GlrX_YruB Glutaredox 42.1 15 0.00033 24.7 1.3 15 44-58 2-16 (74)
67 PF00085 Thioredoxin: Thioredo 42.0 81 0.0018 22.5 5.4 32 40-74 17-48 (103)
68 cd03002 PDI_a_MPD1_like PDI fa 41.5 57 0.0012 24.0 4.5 29 39-68 17-45 (109)
69 TIGR02183 GRXA Glutaredoxin, G 40.7 28 0.00061 25.5 2.7 15 44-58 2-16 (86)
70 cd02950 TxlA TRX-like protein 40.2 66 0.0014 25.9 5.0 30 38-68 18-47 (142)
71 PRK10638 glutaredoxin 3; Provi 40.2 28 0.00061 25.0 2.6 16 43-58 3-18 (83)
72 TIGR00365 monothiol glutaredox 40.2 52 0.0011 24.8 4.1 47 142-197 33-79 (97)
73 cd02998 PDI_a_ERp38 PDIa famil 38.7 61 0.0013 23.3 4.3 29 40-69 18-46 (105)
74 TIGR01068 thioredoxin thioredo 38.4 71 0.0015 22.7 4.5 28 40-68 14-41 (101)
75 cd03003 PDI_a_ERdj5_N PDIa fam 38.2 98 0.0021 22.6 5.4 20 40-59 18-37 (101)
76 cd02993 PDI_a_APS_reductase PD 38.1 74 0.0016 23.9 4.8 30 38-68 19-48 (109)
77 PF13192 Thioredoxin_3: Thiore 37.8 94 0.002 22.0 5.0 26 42-69 1-26 (76)
78 cd03004 PDI_a_ERdj5_C PDIa fam 37.6 98 0.0021 22.6 5.3 21 39-59 18-38 (104)
79 cd03012 TlpA_like_DipZ_like Tl 36.3 89 0.0019 24.0 5.1 42 37-82 20-61 (126)
80 TIGR03140 AhpF alkyl hydropero 36.0 64 0.0014 31.6 5.1 41 18-58 92-135 (515)
81 cd03021 DsbA_GSTK DsbA family, 35.4 75 0.0016 27.0 4.9 36 43-83 2-37 (209)
82 cd02956 ybbN ybbN protein fami 34.7 92 0.002 22.4 4.7 29 39-68 11-39 (96)
83 PRK10329 glutaredoxin-like pro 34.6 42 0.00091 24.5 2.8 16 43-58 2-17 (81)
84 PTZ00051 thioredoxin; Provisio 33.9 1.1E+02 0.0025 21.9 5.1 29 39-68 17-45 (98)
85 cd02964 TryX_like_family Trypa 32.6 96 0.0021 24.1 4.7 32 37-69 14-45 (132)
86 PRK12759 bifunctional gluaredo 31.8 64 0.0014 30.9 4.2 55 142-197 18-72 (410)
87 cd03009 TryX_like_TryX_NRX Try 31.7 1E+02 0.0022 23.7 4.7 31 38-69 16-46 (131)
88 cd02997 PDI_a_PDIR PDIa family 30.6 79 0.0017 22.8 3.7 28 40-68 17-44 (104)
89 TIGR02194 GlrX_NrdH Glutaredox 30.0 42 0.00092 23.4 2.0 15 44-58 1-15 (72)
90 cd02969 PRX_like1 Peroxiredoxi 29.8 1E+02 0.0022 25.0 4.6 41 39-83 24-64 (171)
91 TIGR02738 TrbB type-F conjugat 29.5 48 0.001 27.4 2.6 20 40-59 50-69 (153)
92 cd02948 TRX_NDPK TRX domain, T 29.5 1.7E+02 0.0036 21.7 5.4 30 39-69 16-45 (102)
93 PRK10996 thioredoxin 2; Provis 29.1 1.2E+02 0.0025 24.2 4.7 30 39-69 51-80 (139)
94 cd02996 PDI_a_ERp44 PDIa famil 28.8 68 0.0015 23.9 3.2 20 40-59 18-37 (108)
95 PF06110 DUF953: Eukaryotic pr 28.3 99 0.0022 24.7 4.1 33 50-85 36-68 (119)
96 KOG1752 Glutaredoxin and relat 28.1 47 0.001 26.0 2.1 39 43-85 15-53 (104)
97 cd03010 TlpA_like_DsbE TlpA-li 27.4 72 0.0016 24.3 3.1 27 39-66 24-50 (127)
98 cd02965 HyaE HyaE family; HyaE 27.3 1.1E+02 0.0025 24.1 4.2 19 40-58 27-47 (111)
99 TIGR02740 TraF-like TraF-like 27.2 58 0.0012 29.5 2.9 39 39-84 165-203 (271)
100 PF07511 DUF1525: Protein of u 27.1 66 0.0014 25.7 2.9 25 172-196 70-94 (114)
101 TIGR02187 GlrX_arch Glutaredox 27.0 1.1E+02 0.0024 26.2 4.5 22 37-58 130-151 (215)
102 cd03006 PDI_a_EFP1_N PDIa fami 27.0 1.4E+02 0.0031 23.2 4.8 22 38-59 27-48 (113)
103 TIGR00412 redox_disulf_2 small 26.7 1.5E+02 0.0032 21.0 4.5 25 43-69 2-26 (76)
104 PF07172 GRP: Glycine rich pro 26.6 40 0.00086 26.0 1.5 25 9-33 4-28 (95)
105 cd03008 TryX_like_RdCVF Trypar 26.3 1.1E+02 0.0024 25.2 4.1 34 35-69 20-53 (146)
106 cd02966 TlpA_like_family TlpA- 25.9 2E+02 0.0043 20.2 5.2 30 39-69 18-47 (116)
107 cd02999 PDI_a_ERp44_like PDIa 25.8 1.6E+02 0.0035 21.9 4.7 22 38-59 16-37 (100)
108 COG2143 Thioredoxin-related pr 25.5 77 0.0017 27.1 3.1 56 10-66 4-67 (182)
109 cd02975 PfPDO_like_N Pyrococcu 25.1 1.4E+02 0.003 22.9 4.4 19 40-58 21-40 (113)
110 cd03031 GRX_GRX_like Glutaredo 24.6 85 0.0018 25.9 3.2 14 184-197 59-72 (147)
111 cd02951 SoxW SoxW family; SoxW 24.6 1.2E+02 0.0027 23.1 4.0 19 41-59 15-33 (125)
112 PHA00407 phage lambda Rz1-like 23.3 72 0.0016 23.9 2.2 34 14-47 34-67 (84)
113 cd03040 GST_N_mPGES2 GST_N fam 22.6 61 0.0013 22.5 1.7 15 44-58 2-16 (77)
114 cd02994 PDI_a_TMX PDIa family, 22.5 74 0.0016 23.2 2.3 17 43-59 19-35 (101)
115 PRK15412 thiol:disulfide inter 22.4 88 0.0019 26.1 3.0 21 39-59 67-87 (185)
116 PF04134 DUF393: Protein of un 22.3 93 0.002 23.5 2.9 32 46-84 1-32 (114)
117 TIGR03143 AhpF_homolog putativ 21.9 1.5E+02 0.0032 29.4 4.9 40 19-58 452-494 (555)
118 cd03032 ArsC_Spx Arsenate Redu 20.7 1.5E+02 0.0033 22.8 3.8 33 44-85 2-34 (115)
119 cd02947 TRX_family TRX family; 20.4 1.4E+02 0.0031 20.1 3.3 19 41-59 11-29 (93)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=366.88 Aligned_cols=202 Identities=45% Similarity=0.856 Sum_probs=174.7
Q ss_pred ccchhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 5 SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
.|.+...+++|+.+.+++..-+-+.+ .+.+.+||+|++|||||||||++||++||.|+|+. .+.+++||++||||
T Consensus 8 ~~~~~~~~~~F~c~~~~~~~~~~~~~----~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~-~~~~~idl~lvPfG 82 (220)
T KOG3160|consen 8 KYPSLAILSFFVCLLLFSFLLGILVA----KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDN-LLPSILDLTLVPFG 82 (220)
T ss_pred hcccchhhheeeecchHhhhhhheee----ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhh-cccceeEEEEEccC
Confidence 44555555555544444443222222 34555699999999999999999999999999997 47999999999999
Q ss_pred cceecCCCCceeecCChhhhccchhhhhhcccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCch
Q 026069 85 NAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGY 164 (244)
Q Consensus 85 ~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~ 164 (244)
||+..+++++|+||||+.||.+|++|+|+|++++++..+++||.||++. .....+.+|++..+.++..|++|++|++
T Consensus 83 na~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~ 159 (220)
T KOG3160|consen 83 NAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRL 159 (220)
T ss_pred CceeecCceEEEecCCHHHHhhhHHHHHHHHhhhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCch
Confidence 9998876699999999999999999999999999999999999999983 2345577899999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCceeeEEEECCeechhhHhHHHHHHHHhhcCC
Q 026069 165 GTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGN 214 (244)
Q Consensus 165 G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~~a~~nL~~~IC~~y~g~ 214 (244)
|.+|+.+++.+|..+.|+|.|||||+|||++..++..||.+.+|..|.+.
T Consensus 160 g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~~~~~l~~~~C~~~~~~ 209 (220)
T KOG3160|consen 160 GAKLLLKYAQETAALAPPHPWVPWILVNGQPLQDAEQDLVTLLCEAYKGK 209 (220)
T ss_pred HHHHHHHHHHhhcccCCCCCCcCeEEECCcchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999888888999999999876
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=3.6e-37 Score=242.46 Aligned_cols=107 Identities=40% Similarity=0.767 Sum_probs=94.4
Q ss_pred eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcccccccc
Q 026069 42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELN 121 (244)
Q Consensus 42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~~~~ 121 (244)
|+|+|||||+||||++||++||.|+|..+++.++|||+|||||||+...++.+|+|||||.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 78999999999999999999999988555699999999999999998765457999999999999999999999999888
Q ss_pred cccchhhhhhhhcccCchhhHHHHHHhcCC
Q 026069 122 KHFPFIYCIESLVYEHKYSQWETCFDKLEL 151 (244)
Q Consensus 122 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gl 151 (244)
.+|+||.||++.... ...+. |+++.++
T Consensus 81 ~~~~~i~Cm~~~~~~--~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQDF--PKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCCCC--chhhh-hHHhcCC
Confidence 889999999988532 22333 9998875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.05 E-value=3.2e-09 Score=85.04 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=98.4
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~ 116 (244)
..+.+++|.+|+.-.||+|++| ...|.+.+.. ..+ +++.++||.-.... . -..-..-.|+...
T Consensus 2 ~~~a~~~i~~f~D~~Cp~C~~~-~~~l~~~~~~--~~~-~~~~~~~~p~~~~~---~----------~~~~~~~~~~~~~ 64 (154)
T cd03023 2 NPNGDVTIVEFFDYNCGYCKKL-APELEKLLKE--DPD-VRVVFKEFPILGES---S----------VLAARVALAVWKN 64 (154)
T ss_pred CCCCCEEEEEEECCCChhHHHh-hHHHHHHHHH--CCC-ceEEEEeCCccCcc---h----------HHHHHHHHHHHHh
Confidence 4568999999999999999999 4667666654 443 66777666321100 0 0111122233221
Q ss_pred ccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec
Q 026069 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (244)
Q Consensus 117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~ 196 (244)
.+..+++|..=+.........+.....+...|++.+.+.+|.++.+....+.+..+....+. +..+||++|||+..
T Consensus 65 --~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~gtPt~~v~g~~~ 140 (154)
T cd03023 65 --GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALG--ITGTPAFIIGDTVI 140 (154)
T ss_pred --ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcC--CCcCCeEEECCEEe
Confidence 33456777655544332122234667889999999999999999888888888888777664 89999999999875
Q ss_pred h--hhHhHHHHH
Q 026069 197 Y--EDYENFISY 206 (244)
Q Consensus 197 ~--~a~~nL~~~ 206 (244)
. ...+.|.+.
T Consensus 141 ~G~~~~~~l~~~ 152 (154)
T cd03023 141 PGAVPADTLKEA 152 (154)
T ss_pred cCCCCHHHHHHH
Confidence 3 234555544
No 4
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.83 E-value=1.7e-08 Score=82.10 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=99.4
Q ss_pred CCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccchh
Q 026069 32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV 109 (244)
Q Consensus 32 ~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~l 109 (244)
+...|..+.++.|++|..-.||+|++|. ..|.+++++ + .+.+.|.++|+--.... ...+-.+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~-~~~~~~~~~--~i~~~~v~~~~~~~~~~~~~-------------~~~a~~~ 67 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFH-EELEKLLKK--YIDPGKVKFVFRPVPLDKHS-------------SLRAAMA 67 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEESSSSHHH-------------HHHHHHH
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHH-HHHhhhhhh--ccCCCceEEEEEEccccchh-------------HHHHHHH
Confidence 3346788999999999999999999994 556687776 6 67889999888322211 3345666
Q ss_pred hhhhcccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEE
Q 026069 110 EACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWV 189 (244)
Q Consensus 110 qaCai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I 189 (244)
..|+.+. + +.++.+..-+......... .+.=+...+.+.+.+.+|+++..-...+.+..+.+... +++.+|+|
T Consensus 68 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~ 140 (162)
T PF13462_consen 68 AECVADQ--G-KYFWFFHELLFSQQENFEN--KKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTF 140 (162)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHCHSTSS--HHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEE
T ss_pred HHHHHHH--h-HHHHHHHHHHHHhhhccch--hHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEE
Confidence 7777554 2 3444455455444321111 12222344555778999999887677766666666554 48999999
Q ss_pred EECCeech--hhHhHHHHHH
Q 026069 190 VVDGQPLY--EDYENFISYV 207 (244)
Q Consensus 190 ~ING~~~~--~a~~nL~~~I 207 (244)
+|||+.+. ...++|..+|
T Consensus 141 ~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 141 FINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp EETTCEEETTTSHHHHHHHH
T ss_pred EECCEEeCCCCCHHHHHHHH
Confidence 99999874 2566666655
No 5
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.79 E-value=4.7e-08 Score=80.84 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=94.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccccc
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP 118 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~ 118 (244)
+.+|+|.+|+.-.||.|++| ...+.+.+.+ ..+.+.|+++|+........ ...+....+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-------------~aa~a~~aa~~--- 74 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNF-EPILEAWVKK--LPKDVKFEKVPVVFGGGEGE-------------PLARAFYAAEA--- 74 (178)
T ss_pred CCCcEEEEEECCCCcchhhh-hHHHHHHHHh--CCCCceEEEcCCccccccch-------------HHHHHHHHHHH---
Confidence 78999999999999999999 5778888887 67889999999864321100 01122222211
Q ss_pred ccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069 119 ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (244)
Q Consensus 119 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING 193 (244)
...++.|..=+..... ....+.+...+...|++.+.+.+|.++++-...+.+..+....+ ++..+||++|||
T Consensus 75 -~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG 151 (178)
T cd03019 75 -LGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNG 151 (178)
T ss_pred -cCcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECC
Confidence 1223344333332211 11234578999999999999999999888777777777776655 489999999999
Q ss_pred eec
Q 026069 194 QPL 196 (244)
Q Consensus 194 ~~~ 196 (244)
+..
T Consensus 152 ~~~ 154 (178)
T cd03019 152 KYV 154 (178)
T ss_pred EEE
Confidence 865
No 6
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.44 E-value=2.6e-06 Score=73.67 Aligned_cols=141 Identities=12% Similarity=0.045 Sum_probs=83.6
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcc
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID 115 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~ 115 (244)
...+++|..|+.=.||+|.+|- ..| .+.|.+ .+.+-+.|..+|+.-...... .--.......|+-.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~-~~l~~~~~~~~-~~~~~v~~~~~~~~f~~~~~~----------~~~~a~~~a~~~~~ 102 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFE-EVYHVSDNVKK-KLPEGTKMTKYHVEFLGPLGK----------ELTQAWAVAMALGV 102 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhc-ccccchHHHHH-hCCCCCeEEEecccccchhhH----------HHHHHHHHHHHhCc
Confidence 3567889999999999999993 333 356655 466666666655421110000 00001111111100
Q ss_pred ccccccccc-chhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCe
Q 026069 116 SWPELNKHF-PFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQ 194 (244)
Q Consensus 116 ~~~~~~~~~-~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~ 194 (244)
..+.+ .+..=++..........+...+...|+|.+.+.+|.++..-...+.+..+.+..+ +++.||+++|||+
T Consensus 103 ----~~k~~~~lf~~i~~~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGk 176 (207)
T PRK10954 103 ----EDKVTPPLFEGVQKTQTIQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGK 176 (207)
T ss_pred ----HHHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCE
Confidence 01111 1111122221112334566788899999999999999988777777777776665 4899999999999
Q ss_pred ec
Q 026069 195 PL 196 (244)
Q Consensus 195 ~~ 196 (244)
+.
T Consensus 177 y~ 178 (207)
T PRK10954 177 YM 178 (207)
T ss_pred EE
Confidence 74
No 7
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.94 E-value=0.00017 Score=60.96 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=99.3
Q ss_pred EEEEEEeCChhhHHHHHHHHHHHHhhccCC--cceeEEEEeeecceecCCCC----c-eeecCCh---------------
Q 026069 44 LGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNS----T-FDCQHGP--------------- 101 (244)
Q Consensus 44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~~~~----~-f~CQHG~--------------- 101 (244)
|++|+.-.||.|--. ..+|..+.+. +. .-++|+++||+-.......+ . +.=+||.
T Consensus 1 I~~~~D~~cP~cyl~-~~~l~~~~~~--~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a 77 (201)
T cd03024 1 IDIWSDVVCPWCYIG-KRRLEKALAE--LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAA 77 (201)
T ss_pred CeEEecCcCccHHHH-HHHHHHHHHh--CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 579999999999877 5778777765 43 35999999996332211000 0 0001110
Q ss_pred ----------hhhccchhhhhhcccc-cccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchh
Q 026069 102 ----------SECLLNTVEACAIDSW-PELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYG 165 (244)
Q Consensus 102 ----------~EC~gN~lqaCai~~~-~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G 165 (244)
..-..|...+|.+-.. .....+++|..-+..... ....+.....+...|+|.+.+.++.++.+.
T Consensus 78 ~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 157 (201)
T cd03024 78 AAEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY 157 (201)
T ss_pred HHcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence 0001244444432211 122356677766664422 122345678899999999999999999988
Q ss_pred hHHHHHHHHHhhcCCCCCceeeEEEECCeec--h-hhHhHHHHHH
Q 026069 166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL--Y-EDYENFISYV 207 (244)
Q Consensus 166 ~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~--~-~a~~nL~~~I 207 (244)
++.+.+..+...++ ++..+||++|||+.. + ...+.|.++|
T Consensus 158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 158 ADEVRADEARARQL--GISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred chHHHHHHHHHHHC--CCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 88888888777665 489999999999753 1 2345555543
No 8
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.64 E-value=0.00034 Score=58.61 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=92.4
Q ss_pred eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCC-------------------CceeecCChh
Q 026069 42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS 102 (244)
Q Consensus 42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-------------------~~f~CQHG~~ 102 (244)
++|.+|+.-+||.|-.. ..+|..+.+. +...++|++++++=....... .+..-..++.
T Consensus 1 ~~i~~~~D~~cp~c~~~-~~~l~~l~~~--~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (193)
T cd03025 1 LELYYFIDPLCGWCYGF-EPLLEKLKEE--YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYL 77 (193)
T ss_pred CeEEEEECCCCchhhCc-hHHHHHHHHH--hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhH
Confidence 47899999999999877 4566666665 544588888877643321110 0011111111
Q ss_pred h---hccchhhhhhccc---ccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHH
Q 026069 103 E---CLLNTVEACAIDS---WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK 171 (244)
Q Consensus 103 E---C~gN~lqaCai~~---~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~ 171 (244)
+ --.|...++..-. .........|+.-++.... .+..+.....+.+.|+|.+.+.++.++.+.+..+.+
T Consensus 78 ~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~ 157 (193)
T cd03025 78 ELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE 157 (193)
T ss_pred hcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence 0 0012222221111 1122356677777655321 223345778999999999999999999999999888
Q ss_pred HHHHhhcCCCCCceeeEEEECCe
Q 026069 172 YAAETNSLVPPHQYVPWVVVDGQ 194 (244)
Q Consensus 172 ~~~~T~~l~P~~~~vP~I~ING~ 194 (244)
..+...++. +..+||++|++.
T Consensus 158 ~~~~a~~~g--v~g~Ptfvv~~~ 178 (193)
T cd03025 158 DQKLARELG--INGFPTLVLEDD 178 (193)
T ss_pred HHHHHHHcC--CCccCEEEEEeC
Confidence 888877664 899999999764
No 9
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.62 E-value=0.00021 Score=59.72 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=89.8
Q ss_pred EEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeeccee---cCCC--Cc--------------------eee
Q 026069 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI---RANN--ST--------------------FDC 97 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~---~~~~--~~--------------------f~C 97 (244)
+|++|+.-.||.|-.+ ...|..+... ..+ ++|++.||.-... ..+. .. +.-
T Consensus 1 ~i~~~~D~~Cp~cy~~-~~~l~~l~~~--~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~ 76 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLA-SPRLRKLRAE--YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPF 76 (193)
T ss_dssp EEEEEEBTTBHHHHHH-HHHHHHHHHH--HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--T
T ss_pred CEEEEEeCCCHHHHHH-HHHHHHHHHH--hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcc
Confidence 5899999999999988 4566666664 323 9999999963222 1110 01 000
Q ss_pred cCChhhhccchhhhhhc-ccccccccccchhhhhhhh-----cccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHH
Q 026069 98 QHGPSECLLNTVEACAI-DSWPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK 171 (244)
Q Consensus 98 QHG~~EC~gN~lqaCai-~~~~~~~~~~~fI~C~~~~-----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~ 171 (244)
...+.. .+|...+..+ ...........+..=+... .+.+..+.+...+...|+|.+.+.+-.++..++..+.+
T Consensus 77 ~~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~ 155 (193)
T PF01323_consen 77 NFPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEE 155 (193)
T ss_dssp BTSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHH
T ss_pred cCCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHH
Confidence 000000 0122222211 1111111222222222211 11233345778999999999999999999899999988
Q ss_pred HHHHhhcCCCCCceeeEEEECCe-ec-h-hhHhHHHHH
Q 026069 172 YAAETNSLVPPHQYVPWVVVDGQ-PL-Y-EDYENFISY 206 (244)
Q Consensus 172 ~~~~T~~l~P~~~~vP~I~ING~-~~-~-~a~~nL~~~ 206 (244)
..++..++. +..|||++|||+ .. + +.+..|.+.
T Consensus 156 ~~~~a~~~g--v~GvP~~vv~g~~~~~G~~~~~~l~~~ 191 (193)
T PF01323_consen 156 DTAEARQLG--VFGVPTFVVNGKYRFFGADRLDELEDA 191 (193)
T ss_dssp HHHHHHHTT--CSSSSEEEETTTEEEESCSSHHHHHHH
T ss_pred HHHHHHHcC--CcccCEEEECCEEEEECCCCHHHHHHH
Confidence 888877765 899999999998 33 2 344555544
No 10
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.52 E-value=0.00058 Score=57.92 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=86.2
Q ss_pred EEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCC-CceeecCChh--hhccchhhhh---hcccccc
Q 026069 46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-STFDCQHGPS--ECLLNTVEAC---AIDSWPE 119 (244)
Q Consensus 46 vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-~~f~CQHG~~--EC~gN~lqaC---ai~~~~~ 119 (244)
+|+.-+|+.|-.+ ...|..+... +...+++++||.|++...... ....+.+..- +=......+| -...+..
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~~--~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg 78 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKEE--YGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG 78 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHHH--S-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred eeeCCCChHHHHh-HHHHHHHHHH--cCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence 4677899999998 4556666665 899999999999998743220 1111112111 1113334444 1122334
Q ss_pred cccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069 120 LNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (244)
Q Consensus 120 ~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING 193 (244)
.++...|+.-|+.... ....+....||++.|+|.+.+.+=.+|+..++.+.+--..+..+. ++..|+++|-+
T Consensus 79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~ 155 (176)
T PF13743_consen 79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN 155 (176)
T ss_dssp -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence 5677788888876542 123356789999999999999888899999999999888888876 89999999865
No 11
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=97.48 E-value=0.0015 Score=54.46 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=55.0
Q ss_pred cccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec
Q 026069 122 KHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (244)
Q Consensus 122 ~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~ 196 (244)
...+|+.=+..... .+..+.+..++...|+|.+.+.++.++.+.+..+.+..+...++ ++..||+++|||+..
T Consensus 101 ~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 101 AAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 44555555543221 12334567899999999999999999998888888888777665 599999999999875
No 12
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0024 Score=55.92 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=93.9
Q ss_pred CCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhh
Q 026069 32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEA 111 (244)
Q Consensus 32 ~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqa 111 (244)
+...+....+|.|.+|.+-.||+|.+.+ ..|...+-. .. .+++.+++|--..... -.|++ +-..-.
T Consensus 76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~-~~l~~~~i~--~~-~~~~~~~~~~f~~~~~----~~~~~------a~~~~~ 141 (244)
T COG1651 76 DVVLGNPYAPVTVVEFFDYTCPYCKEAF-PELKKKYID--DG-KVRLVLREFPFLDPAC----PYCRR------AAQAAR 141 (244)
T ss_pred cccccCCCCCceEEEEecCcCccHHHHH-HHHHHHhhh--cC-CCceEEEEeecCCCCc----HHHHH------HHHHHH
Confidence 3336666779999999999999996664 344443332 22 2244444443222111 11444 667777
Q ss_pred hhcccccccccccchhhhhhhhcccCchhhHHHHHHhc-CCC--h--hhhhhcccCchhhHHHHHHHHHhhcCCCCCcee
Q 026069 112 CAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL-ELD--P--KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYV 186 (244)
Q Consensus 112 Cai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~-gld--~--~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~v 186 (244)
|+.+.-. .++|.|..=+.+.... ....+..|+... +.. . ..+..|.+......+..++......+. ++.+
T Consensus 142 ~~~~~~~--~~y~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~g--v~gT 216 (244)
T COG1651 142 CAADQGI--VRYWAFHDALFGSQAE-AWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQLG--VNGT 216 (244)
T ss_pred Hhccccc--hhHHHHHHHHhhcccc-chhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhcC--CCcC
Confidence 8855432 4689998888766532 223345565543 211 1 456777764556677777777766654 9999
Q ss_pred eEEEECCeech-h-hHhHHHHHH
Q 026069 187 PWVVVDGQPLY-E-DYENFISYV 207 (244)
Q Consensus 187 P~I~ING~~~~-~-a~~nL~~~I 207 (244)
|+++|||+.+. . ..+.|.+.|
T Consensus 217 Pt~~v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 217 PTFIVNGKLVPGLPDLDELKAII 239 (244)
T ss_pred CeEEECCeeecCCCCHHHHHHHH
Confidence 99999997543 2 345666555
No 13
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.72 E-value=0.0095 Score=52.84 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=107.6
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCccee--EEEEeeecceec-CC----------CCce----eecCC
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVD--LHLSPWGNAKIR-AN----------NSTF----DCQHG 100 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~id--l~lvP~G~a~~~-~~----------~~~f----~CQHG 100 (244)
...+|+|++|..-.||.|--. ...|-.+... +.++++ +...||=-...- .. .++. .=.|.
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~--~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~ 78 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE--YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHA 78 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh--cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHH
Confidence 457899999999999999655 5556666665 555544 555566322110 00 0000 00000
Q ss_pred -----hhh-----------hccchhhhhhccccc-ccc-cccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhh
Q 026069 101 -----PSE-----------CLLNTVEACAIDSWP-ELN-KHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIV 157 (244)
Q Consensus 101 -----~~E-----------C~gN~lqaCai~~~~-~~~-~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~ 157 (244)
-.| =..|.+.+|-+-++- ... .+..|+.=+.+.-+ .++.+.+-.||.++|||.+.+.
T Consensus 79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~ 158 (225)
T COG2761 79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK 158 (225)
T ss_pred HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence 111 124556666554442 122 47788877765543 3556677899999999999999
Q ss_pred hcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec--h-hhHhHHHHHHHHhhc
Q 026069 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL--Y-EDYENFISYVCKAYK 212 (244)
Q Consensus 158 ~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~--~-~a~~nL~~~IC~~y~ 212 (244)
+=..++...+-+..-.+.+..+. ++.||+++|+|+.- + +..+-|..+|=+...
T Consensus 159 ~~L~s~~~~~avr~d~~~A~e~g--I~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 159 ADLASDAAKDAVRQDEAAAQEMG--IRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHhChHHHHHHHHHHHHHHHCC--CccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence 99998888887777777766654 99999999977653 2 345566666666553
No 14
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.22 E-value=0.013 Score=42.25 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=33.3
Q ss_pred EEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecce
Q 026069 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87 (244)
Q Consensus 44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~ 87 (244)
|.+|+.-.||.|..+ ..+|.+.... ..+.++|+++|++-..
T Consensus 1 i~~f~d~~Cp~C~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLF-EPELEKLLYA--DDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhh-hHHHHHHHhh--cCCcEEEEEeccccCC
Confidence 578999999999999 5778877643 6788999999987554
No 15
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.64 E-value=0.11 Score=45.97 Aligned_cols=46 Identities=7% Similarity=0.114 Sum_probs=32.5
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA 86 (244)
Q Consensus 35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a 86 (244)
.+..+.++.|.+|..-.||+|+++ ..+|.+..+ .-+.+++++|...
T Consensus 102 ~g~~~~k~~I~vFtDp~CpyCkkl-~~~l~~~~~-----~~v~v~~~~~P~~ 147 (232)
T PRK10877 102 YKAPQEKHVITVFTDITCGYCHKL-HEQMKDYNA-----LGITVRYLAFPRQ 147 (232)
T ss_pred ecCCCCCEEEEEEECCCChHHHHH-HHHHHHHhc-----CCeEEEEEeccCC
Confidence 344568889999999999999999 455544332 2367777766643
No 16
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.21 E-value=0.18 Score=45.08 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=37.6
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA 86 (244)
Q Consensus 35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a 86 (244)
.+..+.+..|.+|..-.||+|++| ...+.|..+. ..|.++++|++-.
T Consensus 112 ~g~~~ak~~I~vFtDp~CpyC~kl-~~~l~~~~~~----g~V~v~~ip~~~l 158 (251)
T PRK11657 112 DGKADAPRIVYVFADPNCPYCKQF-WQQARPWVDS----GKVQLRHILVGII 158 (251)
T ss_pred ccCCCCCeEEEEEECCCChhHHHH-HHHHHHHhhc----CceEEEEEecccc
Confidence 345678899999999999999999 5677776664 4588999998753
No 17
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=88.21 E-value=0.66 Score=37.47 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhh-ccCCcceeEEEEeee
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED-VDLLSIVDLHLSPWG 84 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~-~~l~~~idl~lvP~G 84 (244)
.-..++++.++.|.-||||++++ |++.+ -+....|+++++.-.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~v-----P~l~kiae~~p~i~~~~i~rd 81 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNV-----PVLAKIAEANPNIEVRIILRD 81 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHH-----HHHHHHHHH-TTEEEEEE-HH
T ss_pred hcCCCcEEEEEECCCchhHHHHH-----HHHHHHHHhCCCCeEEEEEec
Confidence 45678999999999999999996 55444 113446788887664
No 18
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.10 E-value=1.1 Score=37.94 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA 86 (244)
Q Consensus 35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a 86 (244)
.+..+.++.|.+|..-.||+|+++ ...|.+ ..+-+.|+++||+-.
T Consensus 72 ~g~~~~~~~i~~f~D~~Cp~C~~~-~~~l~~------~~~~v~v~~~~~p~~ 116 (197)
T cd03020 72 YGKGNGKRVVYVFTDPDCPYCRKL-EKELKP------NADGVTVRIFPVPIL 116 (197)
T ss_pred EcCCCCCEEEEEEECCCCccHHHH-HHHHhh------ccCceEEEEEEcCcC
Confidence 445568999999999999999999 455655 234578888888644
No 19
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=84.85 E-value=1.5 Score=37.64 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHHhcCCChhhhh---hcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069 143 ETCFDKLELDPKPIV---DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (244)
Q Consensus 143 ~~Ca~~~gld~~~I~---~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING 193 (244)
..++...|+|++... .-+.++++++.+.+..++..++ ++..||+++||+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~--Gv~GVP~fvv~~ 187 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY--GAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence 589999999865444 4446677777777777665554 699999999964
No 20
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=82.66 E-value=2.6 Score=28.94 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=15.7
Q ss_pred eEEEEEEEeCChhhHHH
Q 026069 42 VKLGLYYESLCPYSANF 58 (244)
Q Consensus 42 V~V~vYyESlCPds~~F 58 (244)
|+|.+|+.+-||.|.+.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 68999999999999877
No 21
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=82.36 E-value=2.8 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 42 VKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 42 V~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
|+|++|+-+-||.|+.. ...|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~-~~~l~~l~~ 26 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAA-KRVVEEVAK 26 (82)
T ss_pred CEEEEEECCCCcchHHH-HHHHHHHHH
Confidence 78999999999999987 344554444
No 22
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=76.63 E-value=1.4 Score=37.23 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcc-eeEEEEeeecceecCC-CCceeecCChh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSI-VDLHLSPWGNAKIRAN-NSTFDCQHGPS 102 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~-idl~lvP~G~a~~~~~-~~~f~CQHG~~ 102 (244)
..||-+-.|.-.-||.||.| +-.|.++|+. +.+- -.|++|....-+...+ ..-+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~--l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYEE--LKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHHH--HHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 34766666667789999999 7889999887 5443 1344444332221111 13456666653
No 23
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=74.84 E-value=9.2 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
.++-..+.|++.. +..--..+.+.++..+..+.|. ...||.|+|||++++
T Consensus 24 ak~~L~~~~i~~~-~vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 24 VKRLLLTLGVNPA-VHEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHHcCCCCE-EEEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence 3455667777654 2222245677888777776652 579999999999984
No 24
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=73.08 E-value=11 Score=27.31 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=30.1
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCC--cceeEEEEee
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPW 83 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~--~~idl~lvP~ 83 (244)
.|+.+-.|+.+-||.|++++ ..|...+++ +. +.++|-.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~~--~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYKK--YKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHHH--hCCCCCEEEEEEEe
Confidence 47889999999999999994 778888877 65 5555555554
No 25
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=71.64 E-value=8.6 Score=28.77 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEe
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (244)
.=..+|+|.+|+..-||+|... .++..-+.. ..+.+++..+=
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~~--~~~~i~~~~vd 50 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDV--VQALNLMAV--LNPNIEHEMID 50 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHH--HHHHHHHHH--HCCCceEEEEE
Confidence 3468999999999999999965 344444433 33345555543
No 26
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=67.12 E-value=8.8 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=20.5
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHHHHH
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYLVKI 66 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~ 66 (244)
...|..|-+|+.--||+|+.+ ..++.+.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~-~~~~~~~ 30 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKL-EKELFPD 30 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHH-HHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHH-HHHHHHH
Confidence 456778899999999999998 5666653
No 27
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=65.27 E-value=11 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred CchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 162 SGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 162 ~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
.++|.++...-.+.|. -+.||.|+|||++++
T Consensus 49 ~~~g~eiq~~l~~~tg-----~~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 49 DEDGSEIQKALKKLTG-----QRTVPNVFIGGKFIG 79 (104)
T ss_pred CCCcHHHHHHHHHhcC-----CCCCCEEEECCEEEc
Confidence 3677788877776664 258999999999985
No 28
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=65.03 E-value=15 Score=25.79 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=28.5
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
+++.+++.|+++..+ ...... ....+..+.+ + ...+|.|+|||++++
T Consensus 17 a~~~L~~~gi~~~~~-di~~~~---~~~~el~~~~----g-~~~vP~v~i~~~~iG 63 (73)
T cd03027 17 VRLFLREKGLPYVEI-NIDIFP---ERKAELEERT----G-SSVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHHCCCceEEE-ECCCCH---HHHHHHHHHh----C-CCCcCEEEECCEEEe
Confidence 467778888887644 222222 2222222222 2 367899999999985
No 29
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=62.73 E-value=9.2 Score=27.51 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=18.0
Q ss_pred CCCCceEEEEEEEeCChhhHHH
Q 026069 37 DVNSKVKLGLYYESLCPYSANF 58 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~F 58 (244)
+...+-+|+||..+-||+|.+-
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKA 24 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHH
Confidence 3445567999999999999987
No 30
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=61.76 E-value=8.6 Score=27.14 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=14.3
Q ss_pred EEEEEEeCChhhHHHH
Q 026069 44 LGLYYESLCPYSANFI 59 (244)
Q Consensus 44 V~vYyESlCPds~~Fi 59 (244)
|.+|+...||+|++..
T Consensus 1 V~~f~~~~Cp~C~~~~ 16 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAK 16 (84)
T ss_pred CEEEECCCChhHHHHH
Confidence 6799999999999884
No 31
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=61.56 E-value=9.6 Score=27.68 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.2
Q ss_pred CceeeEEEECCeech
Q 026069 183 HQYVPWVVVDGQPLY 197 (244)
Q Consensus 183 ~~~vP~I~ING~~~~ 197 (244)
...||.|+|||++++
T Consensus 56 ~~~vP~ifi~g~~ig 70 (85)
T PRK11200 56 VETVPQIFVDQKHIG 70 (85)
T ss_pred CCcCCEEEECCEEEc
Confidence 468999999999985
No 32
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=61.34 E-value=7.9 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.4
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
|++|....||+|++.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 678888888888877
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=60.54 E-value=26 Score=25.78 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCc
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS 74 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~ 74 (244)
+.++-+.+|+.+-||.|+.+. ..|.++.+. +.+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~-~~l~~l~~~--~~~ 44 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLK-PILNKVIDE--FDG 44 (97)
T ss_pred CCCeEEEEEECCCChhHHHHH-HHHHHHHHH--hCC
Confidence 677889999999999999984 556555554 544
No 34
>PF13728 TraF: F plasmid transfer operon protein
Probab=60.40 E-value=7.9 Score=33.90 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=32.5
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
.-..+.-+-+||++.||.|+.|. |++.. +.+.-.|+++|+-
T Consensus 117 ~la~~~gL~~F~~~~C~~C~~~~-----pil~~--~~~~yg~~v~~vs 157 (215)
T PF13728_consen 117 QLAQKYGLFFFYRSDCPYCQQQA-----PILQQ--FADKYGFSVIPVS 157 (215)
T ss_pred HHhhCeEEEEEEcCCCchhHHHH-----HHHHH--HHHHhCCEEEEEe
Confidence 34477889999999999999885 66665 6666788888875
No 35
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=58.94 E-value=8.9 Score=26.50 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=14.4
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|++|+.+.||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 4789999999999986
No 36
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=58.66 E-value=9.3 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.3
Q ss_pred EEEEEEEeCChhhHHHH
Q 026069 43 KLGLYYESLCPYSANFI 59 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi 59 (244)
+|.+|....||+|++..
T Consensus 1 ~v~ly~~~~Cp~C~~~~ 17 (72)
T cd02066 1 KVVVFSKSTCPYCKRAK 17 (72)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 47899999999998773
No 37
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=56.84 E-value=9.2 Score=32.89 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=24.3
Q ss_pred EEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
|-+|+.+-||.|++++ -.|..++++ ..|.++++.
T Consensus 73 lV~FwaswCp~C~~e~-P~L~~l~~~------~g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD-PVLKQLAQQ------YGFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHH-HHHHHHHHH------cCCEEEEEE
Confidence 7789999999999996 344444443 357777765
No 38
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=56.61 E-value=11 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHHH
Q 026069 43 KLGLYYESLCPYSANFI 59 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi 59 (244)
+|.+|+...||+|.+..
T Consensus 1 ~v~~y~~~~Cp~C~~~~ 17 (82)
T cd03419 1 PVVVFSKSYCPYCKRAK 17 (82)
T ss_pred CEEEEEcCCCHHHHHHH
Confidence 47899999999999873
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=56.07 E-value=26 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.4
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEE
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHL 80 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~l 80 (244)
.+.-+..||.+-|+.|+.+. .++..+.+. +.+..+|.+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~-~~~~~~~~~--~~~~~~~~~ 55 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALA-PIYEELAEK--LKGDDNVVI 55 (104)
T ss_pred CCcEEEEEECCCCHHHHHHh-hHHHHHHHH--hcCCCCEEE
Confidence 36677889999999999984 555555554 444334444
No 40
>PHA03050 glutaredoxin; Provisional
Probab=55.00 E-value=23 Score=27.53 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 165 GTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 165 G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
+.++..+..+.|. .+.||.|+|||++++
T Consensus 54 ~~~~~~~l~~~tG-----~~tVP~IfI~g~~iG 81 (108)
T PHA03050 54 ENELRDYFEQITG-----GRTVPRIFFGKTSIG 81 (108)
T ss_pred CHHHHHHHHHHcC-----CCCcCEEEECCEEEe
Confidence 3445555555553 478999999999984
No 41
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=54.54 E-value=12 Score=26.08 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=13.9
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|.||..+.||+|.+.
T Consensus 1 ~i~ly~~~~Cp~C~~a 16 (75)
T cd03418 1 KVEIYTKPNCPYCVRA 16 (75)
T ss_pred CEEEEeCCCChHHHHH
Confidence 3789999999999887
No 42
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=53.47 E-value=9.6 Score=34.38 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=30.8
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
.+--+-+||+|-||+|..|. |++.. +.+.-.|.++|+-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~a-----Pil~~--fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLA-----QVIND--FRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHHH-----HHHHH--HHHHhCCeEEEEe
Confidence 44678899999999999885 77776 7777778888875
No 43
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.94 E-value=9.2 Score=28.66 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.8
Q ss_pred EEEEEeCChhhHHHH
Q 026069 45 GLYYESLCPYSANFI 59 (244)
Q Consensus 45 ~vYyESlCPds~~Fi 59 (244)
.+|+.-+||||.-|+
T Consensus 5 ~lfgsn~Cpdca~a~ 19 (85)
T COG4545 5 KLFGSNLCPDCAPAV 19 (85)
T ss_pred eeeccccCcchHHHH
Confidence 789999999999995
No 44
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=51.95 E-value=11 Score=34.25 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
..+--+-+||++.||+|+.|. |++.. +.+.-.|.++|+-
T Consensus 149 a~~~gL~fFy~~~C~~C~~~a-----pil~~--fa~~ygi~v~~VS 187 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMA-----PVIQA--FAKEYGISVIPIS 187 (256)
T ss_pred HhceeEEEEECCCCchhHHHH-----HHHHH--HHHHhCCeEEEEe
Confidence 355778999999999999885 77765 6677778888875
No 45
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=50.79 E-value=28 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.6
Q ss_pred EEEEEEEeCChhhHHHHHHHHHH
Q 026069 43 KLGLYYESLCPYSANFIINYLVK 65 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi~~qL~P 65 (244)
+|++|+.+-||.|.+. .+.|..
T Consensus 2 ~v~iy~~~~C~~C~~a-~~~L~~ 23 (85)
T PRK11200 2 FVVIFGRPGCPYCVRA-KELAEK 23 (85)
T ss_pred EEEEEeCCCChhHHHH-HHHHHh
Confidence 7999999999999987 344443
No 46
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=50.13 E-value=53 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=30.1
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
.++.++..|++...+.- . ...++..+..+.|. ...+|.|+|||++++
T Consensus 29 ak~~L~~~~i~y~~idv--~--~~~~~~~~l~~~~g-----~~tvP~vfi~g~~iG 75 (90)
T cd03028 29 VVQILNQLGVDFGTFDI--L--EDEEVRQGLKEYSN-----WPTFPQLYVNGELVG 75 (90)
T ss_pred HHHHHHHcCCCeEEEEc--C--CCHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 45667778887765542 1 12344444444442 468999999999885
No 47
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=47.94 E-value=16 Score=27.77 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=14.9
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|+||..+.||+|.+.
T Consensus 9 ~Vvvysk~~Cp~C~~a 24 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVV 24 (99)
T ss_pred CEEEEECCCCHHHHHH
Confidence 5899999999999987
No 48
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=47.71 E-value=37 Score=20.69 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=21.5
Q ss_pred EEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEe
Q 026069 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (244)
Q Consensus 44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (244)
|.+|+.+.||+|+++. ..+... .. ....+++..+.
T Consensus 1 l~~~~~~~c~~c~~~~-~~~~~~-~~--~~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALR-PVLAEL-AL--LNKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhh-hHHHHH-Hh--hCCCcEEEEEE
Confidence 4678999999999983 444443 22 33444444443
No 49
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=47.56 E-value=15 Score=29.05 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.3
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 026069 40 SKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi 59 (244)
.+.-|..|+.+-||+|+.|.
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~ 42 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFS 42 (122)
T ss_pred CCcEEEEEECCCChhHHHHh
Confidence 44467889999999999984
No 50
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=27 Score=28.44 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=25.4
Q ss_pred EeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecce
Q 026069 49 ESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87 (244)
Q Consensus 49 ESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~ 87 (244)
+|-||||++. .-.+..+++. ....+.|--+.-|+-.
T Consensus 42 qSWCPdCV~A-EPvi~~alk~--ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 42 QSWCPDCVAA-EPVINEALKH--APEDVHFVHVYVGNRP 77 (128)
T ss_pred CcCCchHHHh-hHHHHHHHHh--CCCceEEEEEEecCCC
Confidence 4569999998 3455566664 7777777777777653
No 51
>PHA03050 glutaredoxin; Provisional
Probab=46.84 E-value=17 Score=28.27 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=14.8
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|.||.-+-||+|.+.
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5899999999999987
No 52
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.52 E-value=16 Score=25.63 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.7
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|+||.-+.||+|++.
T Consensus 2 ~v~ly~~~~C~~C~ka 17 (73)
T cd03027 2 RVTIYSRLGCEDCTAV 17 (73)
T ss_pred EEEEEecCCChhHHHH
Confidence 5889999999999987
No 53
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=46.11 E-value=41 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHH
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKI 66 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~ 66 (244)
..++.|..|+.+-||.|+.+. .++..+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~-~~~~~~ 38 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA-PEYEKL 38 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC-hHHHHH
Confidence 577899999999999999984 444433
No 54
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=45.84 E-value=41 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.2
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 026069 39 NSKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi 59 (244)
..++-|-.||.+-||.|+.+.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~ 66 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFA 66 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHH
Confidence 346778889999999999874
No 55
>PRK10824 glutaredoxin-4; Provisional
Probab=45.52 E-value=86 Score=24.86 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=28.9
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
+.+-.+..|+++..+.-= +..++.....+.| +...||-|+|||++++
T Consensus 36 ak~lL~~~~i~~~~idi~----~d~~~~~~l~~~s-----g~~TVPQIFI~G~~IG 82 (115)
T PRK10824 36 AVQALSACGERFAYVDIL----QNPDIRAELPKYA-----NWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHcCCCceEEEec----CCHHHHHHHHHHh-----CCCCCCeEEECCEEEc
Confidence 445566677776544321 1224555554444 2469999999999985
No 56
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=45.35 E-value=20 Score=26.19 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.6
Q ss_pred CCceeeEEEECCeech
Q 026069 182 PHQYVPWVVVDGQPLY 197 (244)
Q Consensus 182 ~~~~vP~I~ING~~~~ 197 (244)
+.+.||.|+|||++.+
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 3578999999998764
No 57
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=45.19 E-value=18 Score=25.61 Aligned_cols=15 Identities=27% Similarity=0.813 Sum_probs=13.0
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
|++|....||+|.+.
T Consensus 1 v~ly~~~~Cp~C~~a 15 (79)
T TIGR02181 1 VTIYTKPYCPYCTRA 15 (79)
T ss_pred CEEEecCCChhHHHH
Confidence 578999999999876
No 58
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=44.98 E-value=61 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 41 KVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 41 kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
+.-|..|+..-||.|+.+. ..+..+.+.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~-~~~~~~~~~ 43 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALA-PEYEKLAKE 43 (101)
T ss_pred CcEEEEEECCCCHHHHhhh-HHHHHHHHH
Confidence 3778888899999999994 455554443
No 59
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=44.33 E-value=36 Score=33.25 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHhhhccCCCCCCCCC---CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEE
Q 026069 18 ITLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS 81 (244)
Q Consensus 18 ~~~~~~~~~~~~~~~~~---~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lv 81 (244)
++|.-...+....++.+ ...-+.+++|.+|+...||+|.+.+ ..+..+-. ....|..+++
T Consensus 91 ~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v-~~~~~~a~---~~~~i~~~~i 153 (517)
T PRK15317 91 LALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVV-QALNLMAV---LNPNITHTMI 153 (517)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHH-HHHHHHHH---hCCCceEEEE
Confidence 33433333334444433 3344689999999999999998763 33333322 2345555554
No 60
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=44.02 E-value=13 Score=29.63 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.3
Q ss_pred eCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecce
Q 026069 50 SLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87 (244)
Q Consensus 50 SlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~ 87 (244)
-.||||... +-|+-.+-. +.+.+|++.|+|-+-+
T Consensus 22 f~Cp~c~~i--EGlLa~~P~--l~~~ldV~rV~f~RPR 55 (112)
T PF11287_consen 22 FYCPHCAAI--EGLLASFPD--LRERLDVRRVDFPRPR 55 (112)
T ss_pred EECCchHHH--HhHHhhChh--hhhcccEEEeCCCCch
Confidence 469999976 556666665 8899999999998776
No 61
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=43.93 E-value=62 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.2
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
.++-|-.+|..-|+.|+++. ..+..+.+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~-~~~~~~~~ 45 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLA-PEWKKAAK 45 (103)
T ss_pred CCcEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 45566677889999999994 33444443
No 62
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=43.40 E-value=22 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.9
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|++|+..-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 4789999999999985
No 63
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=43.17 E-value=26 Score=24.34 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=14.4
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|++|..+-||+|.+-
T Consensus 2 ~v~lys~~~Cp~C~~a 17 (72)
T cd03029 2 SVSLFTKPGCPFCARA 17 (72)
T ss_pred eEEEEECCCCHHHHHH
Confidence 5889999999999887
No 64
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=42.80 E-value=92 Score=24.96 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
..|+.|-.|+-+-||.|+... ..|....+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~-~~l~~~~~~ 89 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEM-PYMNELYPK 89 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHH-HHHHHHHHH
Confidence 467788888899999999874 667666664
No 65
>PRK09381 trxA thioredoxin; Provisional
Probab=42.22 E-value=71 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=20.9
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
.+.-|-.||.+-||.|+.+. ..|..+.+.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~-p~~~~l~~~ 49 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIA-PILDEIADE 49 (109)
T ss_pred CCeEEEEEECCCCHHHHHHh-HHHHHHHHH
Confidence 55678888899999999984 444444444
No 66
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=42.11 E-value=15 Score=24.67 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.4
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
|++|+-+.||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999975
No 67
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=42.03 E-value=81 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=23.0
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCc
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS 74 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~ 74 (244)
.+.-|..||...||.|+++ ...|..+... +.+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~-~~~~~~~~~~--~~~ 48 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAF-KPILEKLAKE--YKD 48 (103)
T ss_dssp SSEEEEEEESTTSHHHHHH-HHHHHHHHHH--TTT
T ss_pred CCCEEEEEeCCCCCccccc-cceecccccc--ccc
Confidence 4667788888999999998 4555555554 444
No 68
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=41.53 E-value=57 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
..+.-|..||-.-||.|+++. ..+..+.+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~-~~~~~~a~ 45 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLK-PEYAKAAK 45 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhC-hHHHHHHH
Confidence 356678888999999999884 34444444
No 69
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=40.73 E-value=28 Score=25.47 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=13.6
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
|+||..+-||+|.+.
T Consensus 2 V~vys~~~Cp~C~~a 16 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA 16 (86)
T ss_pred EEEEeCCCCccHHHH
Confidence 789999999999877
No 70
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=40.22 E-value=66 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
...++-|..||-.-||.|+.+. ..|..+.+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~-p~l~~l~~ 47 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMA-PDVAKLKQ 47 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhH-HHHHHHHH
Confidence 4567788889999999999884 33444433
No 71
>PRK10638 glutaredoxin 3; Provisional
Probab=40.19 E-value=28 Score=25.05 Aligned_cols=16 Identities=19% Similarity=0.688 Sum_probs=14.3
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|++|..+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 5889999999999987
No 72
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=40.17 E-value=52 Score=24.85 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=28.7
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
.++-.+..|++...+.- .+ ..++..+..+.|. ...||.|+|||++++
T Consensus 33 ak~lL~~~~i~~~~~di-~~---~~~~~~~l~~~tg-----~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 33 AVQILKACGVPFAYVNV-LE---DPEIRQGIKEYSN-----WPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHcCCCEEEEEC-CC---CHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 34556677887654432 11 2344444444442 469999999999874
No 73
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=38.66 E-value=61 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=20.7
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
.+.-|..||.+-||.|+++. ..+..+.+.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~-~~~~~~~~~ 46 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLA-PEYEKLAAV 46 (105)
T ss_pred CCcEEEEEECCCCHHHHhhC-hHHHHHHHH
Confidence 45678889999999999983 444444443
No 74
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=38.39 E-value=71 Score=22.67 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=19.9
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
.+.-|-.||..-||.|+.+. ..|..+.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~-~~l~~~~~ 41 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIA-PILEELAK 41 (101)
T ss_pred CCcEEEEEECCCCHHHHHhC-HHHHHHHH
Confidence 45678888899999999984 44444443
No 75
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=38.24 E-value=98 Score=22.62 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=16.9
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 026069 40 SKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi 59 (244)
.++-|-.||..-||.|+.+.
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~ 37 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLA 37 (101)
T ss_pred CCeEEEEEECCCChHHHHhH
Confidence 47788889999999999873
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=38.07 E-value=74 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
...++.+..||..-||.|+++. ..+..+.+
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~-~~~~~la~ 48 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAME-ASYEELAE 48 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 3467888999999999999983 33444433
No 77
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=37.84 E-value=94 Score=22.00 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=15.0
Q ss_pred eEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 42 VKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 42 V~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
|+|.+ +.+-||.|... ..-+..+...
T Consensus 1 m~I~v-~~~~C~~C~~~-~~~~~~~~~~ 26 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPEL-VQLLKEAAEE 26 (76)
T ss_dssp EEEEE-ECSSCTTHHHH-HHHHHHHHHH
T ss_pred CEEEE-eCCCCCCcHHH-HHHHHHHHHh
Confidence 46677 45558888865 3344444443
No 78
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=37.57 E-value=98 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.1
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 026069 39 NSKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi 59 (244)
..++-|-.||-.-||.|+++.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~ 38 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALL 38 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 344778889999999999983
No 79
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=36.32 E-value=89 Score=23.99 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEe
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (244)
.-..|+.|-.|+-+-||.|++.+ ..|...+++ +.+ -++.++.
T Consensus 20 ~~~gk~vvl~F~a~~C~~C~~~~-p~l~~l~~~--~~~-~~~~vi~ 61 (126)
T cd03012 20 QLRGKVVLLDFWTYCCINCLHTL-PYLTDLEQK--YKD-DGLVVIG 61 (126)
T ss_pred HhCCCEEEEEEECCCCccHHHHH-HHHHHHHHH--cCc-CCeEEEE
Confidence 33568889999999999999885 567777776 554 2445443
No 80
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.04 E-value=64 Score=31.57 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=27.1
Q ss_pred HHHhhhccCCCCCCCCC---CCCCCCceEEEEEEEeCChhhHHH
Q 026069 18 ITLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANF 58 (244)
Q Consensus 18 ~~~~~~~~~~~~~~~~~---~~~~~~kV~V~vYyESlCPds~~F 58 (244)
++|.-...+....++.+ ...-+.+++|++|+...||+|..-
T Consensus 92 ~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~ 135 (515)
T TIGR03140 92 LAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDV 135 (515)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHH
Confidence 34433344444444443 334468999999999999999865
No 81
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.44 E-value=75 Score=26.99 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=26.7
Q ss_pred EEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee
Q 026069 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (244)
+|++|+.-.||.|--- .++|..+... .-++|++.||
T Consensus 2 ~Id~~~D~vcPwcylg-~~~l~~~~~~----~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLA-FEVLCRYQTA----WNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHH-HHHHHHHHHH----hCCeEEEEee
Confidence 5889999999999644 3555555543 3488999998
No 82
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=34.73 E-value=92 Score=22.37 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
..++-|-.||-+-||.|+.+. ..|..+.+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~-~~~~~~~~ 39 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELL-PLLERLAE 39 (96)
T ss_pred CCCeEEEEEECCCChHHHHHH-HHHHHHHH
Confidence 466788889999999999883 33444443
No 83
>PRK10329 glutaredoxin-like protein; Provisional
Probab=34.63 E-value=42 Score=24.50 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=14.3
Q ss_pred EEEEEEEeCChhhHHH
Q 026069 43 KLGLYYESLCPYSANF 58 (244)
Q Consensus 43 ~V~vYyESlCPds~~F 58 (244)
+|++|...-||+|.+-
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 6889999999999875
No 84
>PTZ00051 thioredoxin; Provisional
Probab=33.87 E-value=1.1e+02 Score=21.87 Aligned_cols=29 Identities=7% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
..++-|-.||.+-||.|+.+. ..|....+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~-~~l~~l~~ 45 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIA-PFYEECSK 45 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 356788889999999999994 44444443
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=32.58 E-value=96 Score=24.06 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
.-..|+-|-.|+-+-||.|+..+ ..|...+++
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~-p~l~~l~~~ 45 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFT-PKLVEFYEK 45 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHH-HHHHHHHHH
Confidence 33568888889999999999985 456665554
No 86
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=31.76 E-value=64 Score=30.95 Aligned_cols=55 Identities=9% Similarity=-0.028 Sum_probs=32.8
Q ss_pred HHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech
Q 026069 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (244)
Q Consensus 142 ~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~ 197 (244)
+++.++..|++...|.- -+...+.+++.+..+.--...-+...||.|+|||++++
T Consensus 18 aK~~L~~~gi~~~~idi-~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 18 AKSWFGANDIPFTQISL-DDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHCCCCeEEEEC-CCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 56778888988764332 24444555555433210011124678999999999874
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=31.73 E-value=1e+02 Score=23.72 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
-..|+-|-.++-+-||.|++.+ ..|...+++
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~-p~l~~~~~~ 46 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFT-PKLVEFYEK 46 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHh-HHHHHHHHH
Confidence 3467778888889999999874 455555554
No 88
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=30.59 E-value=79 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.1
Q ss_pred CceEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~ 68 (244)
.+..+-.||.+-||.|+.+. ..+..+.+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~-~~~~~~~~ 44 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMK-PEFTKAAT 44 (104)
T ss_pred CCCEEEEEECCCCHHHHHhC-HHHHHHHH
Confidence 34668889999999999994 44444444
No 89
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=30.00 E-value=42 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=12.4
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
|+||.-.-||+|++-
T Consensus 1 v~ly~~~~Cp~C~~a 15 (72)
T TIGR02194 1 ITVYSKNNCVQCKMT 15 (72)
T ss_pred CEEEeCCCCHHHHHH
Confidence 578888899999876
No 90
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=29.78 E-value=1e+02 Score=25.02 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (244)
..++.|-.|+-+-||.|++-+ ..|....++ +.+ -+++++-+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~~--~~~-~~v~~v~i 64 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAKE--YGA-KGVAVVAI 64 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHH--Hhh-CCeEEEEE
Confidence 668899999999999998774 567776665 442 24554444
No 91
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=29.52 E-value=48 Score=27.40 Aligned_cols=20 Identities=35% Similarity=0.846 Sum_probs=17.0
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 026069 40 SKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi 59 (244)
....|-.||-+-||.|++.+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~ 69 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFA 69 (153)
T ss_pred CCCEEEEEECCCChhHHHHH
Confidence 44568899999999999985
No 92
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=29.46 E-value=1.7e+02 Score=21.69 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
..++-|-.||-+-||.|+.+. ..|.++.+.
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~-p~l~~~~~~ 45 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVV-SLFKKIKNE 45 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHh-HHHHHHHHH
Confidence 466788899999999999884 345444443
No 93
>PRK10996 thioredoxin 2; Provisional
Probab=29.09 E-value=1.2e+02 Score=24.25 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
..++-|-.||-.-||.|+.+. ..|..+.+.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~-~~l~~l~~~ 80 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFA-PIFEDVAAE 80 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHH-HHHHHHHHH
Confidence 367788899999999999984 445555543
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=28.79 E-value=68 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.9
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 026069 40 SKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 40 ~kV~V~vYyESlCPds~~Fi 59 (244)
.+.-|..||-.-||+|+++.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred CCEEEEEEECCCCHHHHhhH
Confidence 45678889999999999984
No 95
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=28.34 E-value=99 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=18.0
Q ss_pred eCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeec
Q 026069 50 SLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (244)
Q Consensus 50 SlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (244)
|=||||++- .-.+..++.. ..+-..|-.+..|.
T Consensus 36 sWCPDC~~a-ep~v~~~f~~--~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 36 SWCPDCVAA-EPVVEKAFKK--APENARLVYVEVGD 68 (119)
T ss_dssp BSSHHHHHH-HHHHHHHHHH---STTEEEEEEE---
T ss_pred cccHHHHHH-HHHHHHHHHh--CCCCceEEEEEcCC
Confidence 569999988 3455555654 44444444445553
No 96
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.13 E-value=47 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=25.6
Q ss_pred EEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeec
Q 026069 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (244)
+|.+|.-|.||+|.+. .+.|.- +.- -...++|.-.|-|.
T Consensus 15 ~VVifSKs~C~~c~~~-k~ll~~-~~v--~~~vvELD~~~~g~ 53 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRA-KELLSD-LGV--NPKVVELDEDEDGS 53 (104)
T ss_pred CEEEEECCcCchHHHH-HHHHHh-CCC--CCEEEEccCCCCcH
Confidence 6889999999999994 444433 332 23566666665554
No 97
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=27.40 E-value=72 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=20.0
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHH
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKI 66 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~ 66 (244)
..++.|-.|+-+-||.|++.+ ..|...
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~-~~l~~l 50 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEH-PVLMAL 50 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHH-HHHHHH
Confidence 357778888899999999875 344433
No 98
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=27.27 E-value=1.1e+02 Score=24.05 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=13.4
Q ss_pred CceEEEEEEEe--CChhhHHH
Q 026069 40 SKVKLGLYYES--LCPYSANF 58 (244)
Q Consensus 40 ~kV~V~vYyES--lCPds~~F 58 (244)
..+.|-.|+.. .||+|+.+
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred CCCEEEEecCCcccCcchhhh
Confidence 34455666666 79999977
No 99
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=27.20 E-value=58 Score=29.46 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
..++-|-.||.+-||.|+.+. |++.. +.+...+++++..
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~-----P~L~~--la~~yg~~Vi~Vs 203 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQA-----PILQA--FEDRYGIEVLPVS 203 (271)
T ss_pred cCCeEEEEEECCCCccHHHHh-----HHHHH--HHHHcCcEEEEEe
Confidence 456788899999999999874 44443 3333345555553
No 100
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.11 E-value=66 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHhhcCCCCCceeeEEEECCeec
Q 026069 172 YAAETNSLVPPHQYVPWVVVDGQPL 196 (244)
Q Consensus 172 ~~~~T~~l~P~~~~vP~I~ING~~~ 196 (244)
+..-+.+.+-+++.+|-|+||++.+
T Consensus 70 yqgv~~Aw~lgi~k~PAVVfD~~~V 94 (114)
T PF07511_consen 70 YQGVVDAWSLGITKYPAVVFDDRYV 94 (114)
T ss_pred HHHHHHHHHhCccccCEEEEcCCeE
Confidence 3333444455699999999999765
No 101
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=27.01 E-value=1.1e+02 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.615 Sum_probs=19.2
Q ss_pred CCCCceEEEEEEEeCChhhHHH
Q 026069 37 DVNSKVKLGLYYESLCPYSANF 58 (244)
Q Consensus 37 ~~~~kV~V~vYyESlCPds~~F 58 (244)
....+|.|.+|+-.-||+|...
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHH
Confidence 4578899999999999999965
No 102
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=27.00 E-value=1.4e+02 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.2
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 026069 38 VNSKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi 59 (244)
...++-|..||-.-|++|+.+.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~ 48 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAAR 48 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHH
Confidence 5678889999999999999874
No 103
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=26.66 E-value=1.5e+02 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=16.7
Q ss_pred EEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 43 KLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
+|++|. +-||.|... ...+..+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~-~~~~~~~~~e 26 (76)
T TIGR00412 2 KIQIYG-TGCANCQMT-EKNVKKAVEE 26 (76)
T ss_pred EEEEEC-CCCcCHHHH-HHHHHHHHHH
Confidence 467776 999999977 3444444443
No 104
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.57 E-value=40 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCC
Q 026069 9 TKALSLVFYITLFCFLSGSVSASRT 33 (244)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (244)
-..|-|.++|+++.++|+-+++-|.
T Consensus 4 K~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 3455555666777777877777543
No 105
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=26.34 E-value=1.1e+02 Score=25.17 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
++.-..|+-+--|+-|-||.|++++ -.|..++++
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~-P~L~~ly~~ 53 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFA-PKLKDFFVR 53 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHH-HHHHHHHHH
Confidence 3344568888899999999999996 345555543
No 106
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=25.87 E-value=2e+02 Score=20.24 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHHHHHHHhh
Q 026069 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~ 69 (244)
..|..|-.|+-+-||.|++++ ..|....++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~-~~l~~~~~~ 47 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEM-PELEALAKE 47 (116)
T ss_pred CCCEEEEEeecccChhHHHHh-HHHHHHHHH
Confidence 467888889999999999874 455555544
No 107
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=25.80 E-value=1.6e+02 Score=21.93 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=18.9
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 026069 38 VNSKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 38 ~~~kV~V~vYyESlCPds~~Fi 59 (244)
...++-|..||-+-||.|+++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~ 37 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFR 37 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHh
Confidence 4578889999999999999884
No 108
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=77 Score=27.13 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhccCCCCC--------CCCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHH
Q 026069 10 KALSLVFYITLFCFLSGSVSA--------SRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKI 66 (244)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~ 66 (244)
+.+.+++.+++|.++-+|+-+ .|.......+|--+-++-.--||+|.+| ...+.|.
T Consensus 4 vl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~-KKd~~~~ 67 (182)
T COG2143 4 VLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSISPNDKYLLLMFESNGCSYCERF-KKDLKNV 67 (182)
T ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHH-HHhhcch
Confidence 345555566666655555411 1222445567878888888899999999 6666554
No 109
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=25.06 E-value=1.4e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.2
Q ss_pred CceEEEEE-EEeCChhhHHH
Q 026069 40 SKVKLGLY-YESLCPYSANF 58 (244)
Q Consensus 40 ~kV~V~vY-yESlCPds~~F 58 (244)
.++.|.|+ +-.-||.|+.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH
Confidence 45667676 56799999876
No 110
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=24.63 E-value=85 Score=25.94 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.5
Q ss_pred ceeeEEEECCeech
Q 026069 184 QYVPWVVVDGQPLY 197 (244)
Q Consensus 184 ~~vP~I~ING~~~~ 197 (244)
..||-|+|||++++
T Consensus 59 ~tvPqVFI~G~~IG 72 (147)
T cd03031 59 VSLPRVFVDGRYLG 72 (147)
T ss_pred CCCCEEEECCEEEe
Confidence 68999999999984
No 111
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=24.63 E-value=1.2e+02 Score=23.07 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.9
Q ss_pred ceEEEEEEEeCChhhHHHH
Q 026069 41 KVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 41 kV~V~vYyESlCPds~~Fi 59 (244)
|+.|..|+.+-||.|+++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred CcEEEEEeCCCCHHHHHHH
Confidence 7788889999999999985
No 112
>PHA00407 phage lambda Rz1-like protein
Probab=23.32 E-value=72 Score=23.88 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCCCceEEEEE
Q 026069 14 LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLY 47 (244)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~V~vY 47 (244)
++|=+-+.|..--||++|+.-+..+.+||+|+.-
T Consensus 34 aLIGlllicv~tISGCaSes~lp~ep~k~TVDaS 67 (84)
T PHA00407 34 ALIGLLLICVATISGCASESNLPVEPQKVTVDAS 67 (84)
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcccceeeee
Confidence 4455555666777888887667667788877643
No 113
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=22.56 E-value=61 Score=22.52 Aligned_cols=15 Identities=27% Similarity=0.746 Sum_probs=8.0
Q ss_pred EEEEEEeCChhhHHH
Q 026069 44 LGLYYESLCPYSANF 58 (244)
Q Consensus 44 V~vYyESlCPds~~F 58 (244)
++||+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 455555555555544
No 114
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=22.50 E-value=74 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHHH
Q 026069 43 KLGLYYESLCPYSANFI 59 (244)
Q Consensus 43 ~V~vYyESlCPds~~Fi 59 (244)
.|-.||-+-||.|+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~ 35 (101)
T cd02994 19 WMIEFYAPWCPACQQLQ 35 (101)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 47888999999999874
No 115
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=22.43 E-value=88 Score=26.12 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.4
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 026069 39 NSKVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 39 ~~kV~V~vYyESlCPds~~Fi 59 (244)
..|+.|-.|+-+-||.|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~ 87 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEH 87 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHH
Confidence 468888889999999999886
No 116
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.31 E-value=93 Score=23.51 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=22.1
Q ss_pred EEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069 46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (244)
Q Consensus 46 vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (244)
|+|..-||-|.+++. .+ .+ ....=.|+++|+.
T Consensus 1 v~YDg~C~lC~~~~~-~l----~~--~d~~~~l~~~~~~ 32 (114)
T PF04134_consen 1 VFYDGDCPLCRREVR-FL----RR--RDRGGRLRFVDIQ 32 (114)
T ss_pred CEECCCCHhHHHHHH-HH----Hh--cCCCCCEEEEECC
Confidence 689999999999963 22 22 3334557888884
No 117
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=21.93 E-value=1.5e+02 Score=29.41 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHhhhccCCCCCCCCC---CCCCCCceEEEEEEEeCChhhHHH
Q 026069 19 TLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANF 58 (244)
Q Consensus 19 ~~~~~~~~~~~~~~~~---~~~~~~kV~V~vYyESlCPds~~F 58 (244)
+|.-.-.+....++.. ...-+.+++|.+|+..-||+|...
T Consensus 452 ~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~ 494 (555)
T TIGR03143 452 ALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDV 494 (555)
T ss_pred HHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHH
Confidence 3333334444444433 234468999999999999999876
No 118
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=20.68 E-value=1.5e+02 Score=22.78 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=22.8
Q ss_pred EEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeec
Q 026069 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (244)
Q Consensus 44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (244)
|++|+-..||.|++-. + .++. .-++++++-+..
T Consensus 2 i~iY~~~~C~~c~ka~-~----~L~~----~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAK-Q----WLEE----HQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHH-H----HHHH----CCCceEEEecCC
Confidence 7899999999999873 2 2222 235777776643
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=20.44 E-value=1.4e+02 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.0
Q ss_pred ceEEEEEEEeCChhhHHHH
Q 026069 41 KVKLGLYYESLCPYSANFI 59 (244)
Q Consensus 41 kV~V~vYyESlCPds~~Fi 59 (244)
++-+-+|+..-||.|+.+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~ 29 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIA 29 (93)
T ss_pred CcEEEEEECCCChhHHHhh
Confidence 6678888999999999873
Done!