Query 026072
Match_columns 244
No_of_seqs 116 out of 440
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 3.9E-91 8.4E-96 584.5 16.2 235 1-239 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.2E-88 2.6E-93 597.3 25.1 234 6-241 1-238 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.6E-84 5.7E-89 569.3 23.7 232 6-240 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 9.5E-80 2.1E-84 529.7 20.2 234 5-241 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 95.4 0.042 9.1E-07 38.9 5.3 51 150-202 21-71 (78)
6 KOG1840 Kinesin light chain [C 94.7 4.8 0.0001 39.6 18.9 201 7-223 200-413 (508)
7 TIGR00990 3a0801s09 mitochondr 90.8 9.5 0.00021 37.7 15.0 51 150-202 483-533 (615)
8 PF12862 Apc5: Anaphase-promot 89.9 2.4 5.3E-05 31.5 7.8 73 134-213 3-76 (94)
9 PF04781 DUF627: Protein of un 86.1 2.5 5.3E-05 33.2 5.8 41 124-164 33-74 (111)
10 PF13374 TPR_10: Tetratricopep 81.8 1.5 3.1E-05 26.6 2.4 24 150-173 18-41 (42)
11 PF13414 TPR_11: TPR repeat; P 78.8 11 0.00024 25.4 6.4 47 150-206 19-66 (69)
12 PF13431 TPR_17: Tetratricopep 72.3 3.7 8.1E-05 24.8 2.2 34 156-198 1-34 (34)
13 PF13174 TPR_6: Tetratricopept 69.8 11 0.00023 21.4 3.8 27 8-34 2-28 (33)
14 PF13424 TPR_12: Tetratricopep 69.2 28 0.00061 24.0 6.6 52 172-226 1-52 (78)
15 PF07719 TPR_2: Tetratricopept 68.9 11 0.00024 21.5 3.8 26 9-34 4-29 (34)
16 PF12569 NARP1: NMDA receptor- 66.1 1.4E+02 0.0031 29.5 17.7 63 144-208 156-224 (517)
17 PF13181 TPR_8: Tetratricopept 61.4 20 0.00043 20.6 3.9 27 8-34 3-29 (34)
18 PF13428 TPR_14: Tetratricopep 60.9 20 0.00042 22.5 4.1 27 8-34 3-29 (44)
19 KOG4162 Predicted calmodulin-b 60.5 2.2E+02 0.0047 29.7 14.7 162 18-202 335-503 (799)
20 PF13176 TPR_7: Tetratricopept 57.6 21 0.00045 21.4 3.6 25 9-33 2-26 (36)
21 PF00515 TPR_1: Tetratricopept 55.6 24 0.00051 20.3 3.6 26 9-34 4-29 (34)
22 PF01765 RRF: Ribosome recycli 54.1 56 0.0012 27.0 6.7 72 40-112 85-156 (165)
23 CHL00033 ycf3 photosystem I as 53.1 1.1E+02 0.0024 24.4 8.4 68 150-225 88-163 (168)
24 PF14559 TPR_19: Tetratricopep 52.6 56 0.0012 21.6 5.6 43 151-202 8-50 (68)
25 TIGR00990 3a0801s09 mitochondr 52.3 2.4E+02 0.0053 27.8 16.5 70 150-229 524-597 (615)
26 COG0233 Frr Ribosome recycling 52.0 62 0.0014 27.7 6.7 74 39-113 104-177 (187)
27 KOG4759 Ribosome recycling fac 51.9 69 0.0015 28.9 7.2 71 40-113 183-253 (263)
28 PF13371 TPR_9: Tetratricopept 50.5 75 0.0016 21.3 7.2 61 151-226 12-72 (73)
29 PRK09782 bacteriophage N4 rece 49.0 3.7E+02 0.008 28.9 15.2 26 9-34 512-537 (987)
30 KOG1840 Kinesin light chain [C 48.7 2.8E+02 0.0061 27.4 18.6 171 9-202 286-475 (508)
31 TIGR02917 PEP_TPR_lipo putativ 47.4 2.9E+02 0.0063 27.2 16.1 27 8-34 705-731 (899)
32 COG3947 Response regulator con 44.1 45 0.00097 31.0 4.9 50 183-235 286-335 (361)
33 cd00520 RRF Ribosome recycling 43.8 75 0.0016 26.7 6.1 74 39-113 98-171 (179)
34 TIGR00496 frr ribosome recycli 43.8 87 0.0019 26.4 6.4 74 39-113 93-166 (176)
35 PRK00083 frr ribosome recyclin 42.3 94 0.002 26.4 6.4 74 39-113 102-175 (185)
36 PRK14720 transcript cleavage f 41.1 88 0.0019 33.1 7.2 77 120-207 99-178 (906)
37 PF13414 TPR_11: TPR repeat; P 39.1 1.1E+02 0.0025 20.1 6.7 46 7-56 4-49 (69)
38 PF12895 Apc3: Anaphase-promot 38.4 44 0.00096 23.5 3.4 44 152-202 7-50 (84)
39 PF13429 TPR_15: Tetratricopep 36.9 79 0.0017 27.5 5.4 24 11-34 49-72 (280)
40 PRK11447 cellulose synthase su 36.9 5.7E+02 0.012 27.6 13.4 143 9-173 606-748 (1157)
41 TIGR02521 type_IV_pilW type IV 36.5 2.1E+02 0.0046 22.6 18.3 162 7-202 32-194 (234)
42 PF05010 TACC: Transforming ac 35.6 2.8E+02 0.006 24.1 8.4 84 11-110 123-206 (207)
43 PF10083 DUF2321: Uncharacteri 34.4 2.7E+02 0.0059 23.2 7.7 34 24-60 83-116 (158)
44 smart00028 TPR Tetratricopepti 33.5 71 0.0015 16.2 3.8 26 9-34 4-29 (34)
45 PF10516 SHNi-TPR: SHNi-TPR; 32.2 59 0.0013 20.4 2.7 37 132-171 2-38 (38)
46 PRK02603 photosystem I assembl 32.2 2.7E+02 0.0058 22.4 7.6 67 151-225 89-163 (172)
47 PF13432 TPR_16: Tetratricopep 32.1 1.5E+02 0.0032 19.4 6.7 54 11-69 2-55 (65)
48 PF14559 TPR_19: Tetratricopep 31.4 69 0.0015 21.2 3.3 53 18-75 3-55 (68)
49 PF12895 Apc3: Anaphase-promot 30.4 89 0.0019 21.9 3.9 22 10-31 62-83 (84)
50 PRK15326 type III secretion sy 29.4 1.3E+02 0.0027 22.3 4.4 36 150-187 20-59 (80)
51 PRK15363 pathogenicity island 28.8 3.4E+02 0.0074 22.5 8.4 74 145-228 80-155 (157)
52 PF13371 TPR_9: Tetratricopept 28.8 1.1E+02 0.0024 20.4 4.0 57 13-74 2-58 (73)
53 TIGR02917 PEP_TPR_lipo putativ 28.3 5.8E+02 0.013 25.1 17.4 26 9-34 468-493 (899)
54 PF14490 HHH_4: Helix-hairpin- 27.8 90 0.002 23.1 3.6 48 127-186 38-86 (94)
55 TIGR03504 FimV_Cterm FimV C-te 27.6 1E+02 0.0023 19.9 3.4 40 10-51 3-42 (44)
56 CHL00033 ycf3 photosystem I as 26.6 3.3E+02 0.0071 21.6 8.7 50 150-206 51-100 (168)
57 PRK02603 photosystem I assembl 26.3 2.8E+02 0.0061 22.2 6.7 49 151-206 52-100 (172)
58 PRK10049 pgaA outer membrane p 24.9 7.6E+02 0.016 25.3 14.8 55 9-69 86-140 (765)
59 PF08631 SPO22: Meiosis protei 24.9 4.8E+02 0.01 23.0 8.7 85 150-235 9-99 (278)
60 PF09324 DUF1981: Domain of un 24.2 2.9E+02 0.0062 20.1 6.1 36 40-75 28-67 (86)
61 KOG0570 Transcriptional coacti 24.0 3.9E+02 0.0086 23.3 7.1 26 45-70 109-139 (223)
62 PF08424 NRDE-2: NRDE-2, neces 23.8 4.6E+02 0.01 23.8 8.2 86 150-239 118-213 (321)
63 KOG1156 N-terminal acetyltrans 23.6 6.5E+02 0.014 25.9 9.5 159 42-223 3-189 (700)
64 KOG1107 Membrane coat complex 23.1 2E+02 0.0044 29.6 5.9 43 150-192 656-699 (760)
65 PF00244 14-3-3: 14-3-3 protei 22.8 2.4E+02 0.0052 24.7 5.9 58 94-164 141-203 (236)
66 PF14689 SPOB_a: Sensor_kinase 22.0 1.7E+02 0.0038 20.0 3.9 22 13-34 30-51 (62)
67 PF11568 Med29: Mediator compl 21.9 2.5E+02 0.0054 23.2 5.4 49 54-106 10-69 (148)
68 PRK10049 pgaA outer membrane p 21.2 9E+02 0.019 24.8 15.4 27 8-34 51-77 (765)
69 PRK10370 formate-dependent nit 21.1 2.9E+02 0.0063 23.2 5.9 61 6-71 107-170 (198)
70 cd05493 Bromo_ALL-1 Bromodomai 20.7 1E+02 0.0023 24.8 2.9 37 96-132 75-118 (131)
71 cd05804 StaR_like StaR_like; a 20.7 5.9E+02 0.013 22.5 12.4 27 175-202 185-211 (355)
72 TIGR02105 III_needle type III 20.5 2.6E+02 0.0057 20.1 4.7 36 148-186 12-51 (72)
73 PLN03088 SGT1, suppressor of 20.1 2.7E+02 0.0058 25.7 5.9 46 151-206 19-64 (356)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-91 Score=584.54 Aligned_cols=235 Identities=71% Similarity=1.089 Sum_probs=228.4
Q ss_pred CCCCcHHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCc
Q 026072 1 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKN 80 (244)
Q Consensus 1 ~~~~~re~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~ 80 (244)
|.+ .||+.+|+|+|++||+||+||++-||.++. .+ .+|+.+|||||||||||+||+||+|||++++++||++++++
T Consensus 1 Ms~-~rE~svylAkLaeqAERYe~MvenMk~vas--~~-~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~ 76 (268)
T COG5040 1 MST-SREDSVYLAKLAEQAERYEEMVENMKLVAS--SG-QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGN 76 (268)
T ss_pred CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCC
Confidence 554 599999999999999999999999999997 54 99999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHH
Q 026072 81 EEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAA 160 (244)
Q Consensus 81 ~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 160 (244)
..++.+|+.|+++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.++++.+.+.++|+.|
T Consensus 77 ~~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~A 156 (268)
T COG5040 77 THQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAA 156 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH---HHHHhhhhcCCcchHhHHHHHHHHHhhHhhhhhcc
Q 026072 161 QDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ---EAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDM 237 (244)
Q Consensus 161 ~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~---~Ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~ 237 (244)
.++|...||||||||||||||||||||||+|++++||.+||+ +||++||+|+|++|+|+|+||||||||||+|+++.
T Consensus 157 seiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~ 236 (268)
T COG5040 157 SEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDA 236 (268)
T ss_pred HHHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccc
Confidence 999999999999999999999999999999999999999999 99999999999999999999999999999999875
Q ss_pred cc
Q 026072 238 QE 239 (244)
Q Consensus 238 ~~ 239 (244)
+.
T Consensus 237 e~ 238 (268)
T COG5040 237 EY 238 (268)
T ss_pred cc
Confidence 43
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.2e-88 Score=597.29 Aligned_cols=234 Identities=77% Similarity=1.161 Sum_probs=224.7
Q ss_pred HHhHHHHHHHHHHhcChHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhH
Q 026072 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (244)
Q Consensus 6 re~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~-~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~ 84 (244)
|++++|+|||++|||||+||+.+||++++ . ++.+||.||||||||||||+||++|+|||+|++++++++.+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 68999999999999999999999999998 4 32599999999999999999999999999999999998878887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 026072 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (244)
Q Consensus 85 ~~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (244)
+.++.||++|++||..+|++|+++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH---HHHHhhhhcCCcchHhHHHHHHHHHhhHhhhhhcccccc
Q 026072 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ---EAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQI 241 (244)
Q Consensus 165 ~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~---~Ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~~ 241 (244)
+++||||||+||||+||||||||||+|++++||++|++ +|++++|+++|++|+|+++|||||||||++|++++++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 98999999999999999999999999999999999999 999999999999999999999999999999999855443
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.6e-84 Score=569.28 Aligned_cols=232 Identities=69% Similarity=1.068 Sum_probs=219.6
Q ss_pred HHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHH
Q 026072 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (244)
Q Consensus 6 re~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~ 85 (244)
|++++|+|||++|||||+||+++||++++ ++ ++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--MN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--TS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--cC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999999 65 9999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 026072 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (244)
Q Consensus 86 ~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (244)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH---HHHHhhhhcCCcchHhHHHHHHHHHhhHhhhhhccccc
Q 026072 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ---EAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQ 240 (244)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~---~Ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~ 240 (244)
++|||+||+||||+||||||||||+|++++||+||++ +|++++|++++++|+|+++|||||||||++|+++.+++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-80 Score=529.66 Aligned_cols=234 Identities=74% Similarity=1.097 Sum_probs=227.9
Q ss_pred cHHhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhH
Q 026072 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (244)
Q Consensus 5 ~re~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~ 84 (244)
+|++++++|++++|++||+||+.+||.+++ .+ .+||.+|||||||+|||+|+++|++||+|++|+||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~--~~-~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE--LD-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc--cc-hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 65 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 026072 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (244)
Q Consensus 85 ~~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (244)
..+..||++|+.||..+|++++.++|.+|+|+++. .+++|||+|||||||||++||.+|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH---HHHHhhhhcCCcchHhHHHHHHHHHhhHhhhhhccccc
Q 026072 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ---EAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQ 240 (244)
Q Consensus 164 a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~---~Ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~ 240 (244)
++..|+||||+||||+||||||||||++.|++||.|||+ +||.++|++++++|+|||+||||||||+|+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999999987765
Q ss_pred c
Q 026072 241 I 241 (244)
Q Consensus 241 ~ 241 (244)
.
T Consensus 238 ~ 238 (247)
T KOG0841|consen 238 E 238 (247)
T ss_pred c
Confidence 3
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.41 E-value=0.042 Score=38.92 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
-++|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|++..++
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 46699999999999 567899988888888888888887 7999999999887
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.71 E-value=4.8 Score=39.60 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=127.9
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhcc--C-CCCCCCHH-HHHHHHHHHHhhhhhhhhHHHHHHH-HhhhhhccCc-
Q 026072 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSS--T-PATELTVE-ERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKN- 80 (244)
Q Consensus 7 e~~i~~Aklaeq~ery~Dm~~~mk~ii~~~--~-~~~~L~~e-ERnLls~ayKn~i~~~R~s~r~l~~-ie~k~~~~~~- 80 (244)
..+.++|.+..+.|+|+.++...|+.+++- . +...+-.. -.+-|++.|-+. +..+.|..+... +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345678888889999999999999887531 0 10122222 334466666543 445666666642 3333433443
Q ss_pred -hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHH
Q 026072 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (244)
Q Consensus 81 -~~~~~~i~~-----yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (244)
+.....+.+ ++.-=-.|-...|..+++|..+.+. +..++-..- +.++..-..-..-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333333332 2223336888999999999988333 222322211 222222222233367899
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCC-cchHhHHHHH
Q 026072 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGE-ESYKDSTLIM 223 (244)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~e-e~~~ds~~il 223 (244)
..|+.|+++....+++.||.-=|.--|+++.|+- +|..++|.++.++ |++....... ..+-....|-
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~-ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKK-AIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHH-HHHHHHhcccCcChhhhHHHH
Confidence 9999999999888999999999999999999886 7999999999998 8888766544 2343344333
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.76 E-value=9.5 Score=37.72 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
.+.|...|++|+.+... .++.++..++ .++.+..+|+-.|+.++|+.+.++
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45677888888766532 3333332222 345555566666788888777766
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.93 E-value=2.4 Score=31.53 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=50.9
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcC
Q 026072 134 YRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQEAIAELDTLG 212 (244)
Q Consensus 134 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~-LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ 212 (244)
.+|+--+..++ -..|.+...+.++.+..+..+.++..+..+ ||.+.+++. +|++++|+...++ |+.-....+
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~e-Ai~~Are~~ 75 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEE-AIRLARENG 75 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH-HHHHHHHHC
Confidence 45555555543 345788888888888877777754555544 788887776 6999999998887 766655544
Q ss_pred C
Q 026072 213 E 213 (244)
Q Consensus 213 e 213 (244)
+
T Consensus 76 D 76 (94)
T PF12862_consen 76 D 76 (94)
T ss_pred C
Confidence 4
No 9
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.08 E-value=2.5 Score=33.23 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=33.5
Q ss_pred hHHhhhccccchhhhhhcc-chhHHHHHHHHHHHHHHHHHHH
Q 026072 124 VFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIA 164 (244)
Q Consensus 124 vfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a 164 (244)
.|-+...|+.+..+|.... .+.+....-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3777899999999999776 4556778899999999997544
No 10
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.80 E-value=1.5 Score=26.59 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHP 173 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p 173 (244)
.+.|...|++|+.+.++-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 366899999999999988999998
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=78.83 E-value=11 Score=25.41 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQEAIA 206 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~-~~~~A~~iak~~Ai~ 206 (244)
-+.|...|++|+++ +|-.-.+..|.++-++. +| +.++|+...++ |++
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~-al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEK-ALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHH-HHH
Confidence 46689999999976 24445578888888776 57 79999998887 443
No 12
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.34 E-value=3.7 Score=24.80 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHH
Q 026072 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (244)
Q Consensus 156 aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~ 198 (244)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 4677765 345554 456788898886 699999863
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.76 E-value=11 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 8 ~~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999996
No 14
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=69.16 E-value=28 Score=24.00 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred CchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCCcchHhHHHHHHHH
Q 026072 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGEESYKDSTLIMQLL 226 (244)
Q Consensus 172 ~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ee~~~ds~~ilqlL 226 (244)
||.......|.+..|++ +|+.++|+...++ |+.-...++++ ..+....+.-|
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~-al~~~~~~~~~-~~~~a~~~~~l 52 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEK-ALDIEEQLGDD-HPDTANTLNNL 52 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-HHHHHHHTTTH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHHHHHHHCCC-CHHHHHHHHHH
Confidence 78888888999998886 7999999999998 66655555542 34444444333
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.93 E-value=11 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987
No 16
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=66.13 E-value=1.4e+02 Score=29.46 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Q 026072 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAEL 208 (244)
Q Consensus 144 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~l 208 (244)
..+..+++.-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+ ||..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~-aI~ht 224 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK-AIEHT 224 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcC
Confidence 3455666666666666554432 233 345777888888888899999999999998886 55543
No 17
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.41 E-value=20 Score=20.57 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 8 ~~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 18
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=60.86 E-value=20 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 8 ~~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
-...+|+...+.|+++++++.+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 19
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=60.51 E-value=2.2e+02 Score=29.68 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=90.1
Q ss_pred HhcChHHHHHHHHHHhhccCCCCCCCHHHH-HHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHH----
Q 026072 18 QAERYEEMVKFMDSLVTSSTPATELTVEER-NLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRS---- 92 (244)
Q Consensus 18 q~ery~Dm~~~mk~ii~~~~~~~~L~~eER-nLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~---- 92 (244)
.+|+|....+++.+.+. ..+..-|| +.++.+|-. .++--.+.+.+..--.+.+. . +...-++-.++.
T Consensus 335 ~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~~-p-s~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSEQ-P-SDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhcccccC-C-CcchHHHHHHHHHHhc
Confidence 35777777877777653 33333333 344444432 23344455555322222210 1 111122222221
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhcc-chhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026072 93 -KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAP 170 (244)
Q Consensus 93 -ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~p 170 (244)
+.-+|..++...++++.... . ..-+---+++-|=-|-..|-..+ .++|.....++.++|++|.+ +.|
T Consensus 407 l~~~eegldYA~kai~~~~~~----~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~ 475 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQ----R--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDP 475 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhh----h--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 23356666666666543110 1 11122234667777777766554 67788899999999999974 678
Q ss_pred CCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 171 THPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 171 t~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
+|| -...+.|++|-+ .++.+.|...++.
T Consensus 476 ~dp---~~if~lalq~A~-~R~l~sAl~~~~e 503 (799)
T KOG4162|consen 476 TDP---LVIFYLALQYAE-QRQLTSALDYARE 503 (799)
T ss_pred CCc---hHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence 999 334556666665 6888888888887
No 20
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.56 E-value=21 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLV 33 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii 33 (244)
+..+|.+..+.|.|+.++++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999999855
No 21
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=55.65 E-value=24 Score=20.35 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45688889999999999999999997
No 22
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=54.09 E-value=56 Score=26.99 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026072 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (244)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 112 (244)
|.+|.|-|.-+....|......|.+.|.+..-..+.-.+ .......-++-.++++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999986432221100 000000234555566777777777777666654
No 23
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.07 E-value=1.1e+02 Score=24.42 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHH------HHhCCHHHHHHHHHH--HHHHhhhhcCCcchHhHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQ--EAIAELDTLGEESYKDSTL 221 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~y------Ei~~~~~~A~~iak~--~Ai~~ld~l~ee~~~ds~~ 221 (244)
.+.|..+|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|....++ ......-.++.+.+.++..
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 35688889988865 3333 233445555555 246888888877776 3333333455566666655
Q ss_pred HHHH
Q 026072 222 IMQL 225 (244)
Q Consensus 222 ilql 225 (244)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 24
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=52.63 E-value=56 Score=21.60 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+.++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 4577777777653 34455556667777777 6999999998876
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=52.27 E-value=2.4e+02 Score=27.77 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCC----cchHhHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGE----ESYKDSTLIMQL 225 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~e----e~~~ds~~ilql 225 (244)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+ |+.-..+..+ -++.+++.+-..
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~-A~~l~~~~~e~~~a~~~~~a~~~~~~ 593 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFER-AAELARTEGELVQAISYAEATRTQIQ 593 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765 3555553 22334444444 7999999998887 4332221111 246666666444
Q ss_pred HHhh
Q 026072 226 LRDN 229 (244)
Q Consensus 226 LrdN 229 (244)
++.+
T Consensus 594 ~~~~ 597 (615)
T TIGR00990 594 VQED 597 (615)
T ss_pred HHHH
Confidence 4444
No 26
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=52.02 E-value=62 Score=27.72 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026072 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (244)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 113 (244)
.|+||.|-|.=|..-.|...-..|-|.|.+.-=.... .+....-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999885211110 0000000112355666777888888888888887654
No 27
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=51.91 E-value=69 Score=28.89 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026072 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (244)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 113 (244)
|+.|.|-|.-|+...+......|.|+|-+..=.-+...+... ..-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999986432222111110 02234455777888888888888877654
No 28
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=50.54 E-value=75 Score=21.31 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCCcchHhHHHHHHHH
Q 026072 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGEESYKDSTLIMQLL 226 (244)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ee~~~ds~~ilqlL 226 (244)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....+ ++.. ++ ...+...+.++|
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~-~l~~----~p-~~~~~~~~~a~l 72 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLER-ALEL----SP-DDPDARALRAML 72 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHH-HHHH----CC-CcHHHHHHHHhc
Confidence 4456666666543 45556677778888887 7999999998887 5432 11 234555555544
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=49.00 E-value=3.7e+02 Score=28.87 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34556666667777777777766553
No 30
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=48.72 E-value=2.8e+02 Score=27.43 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhhccC-CCCCCCHHHHHHHHH---------HHHhhhhhhhhHHHHHHHHhhhhhcc
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSV---------AYKNVIGSLRAAWRIISSIEQKEEGR 78 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~~~~-~~~~L~~eERnLls~---------ayKn~i~~~R~s~r~l~~ie~k~~~~ 78 (244)
+.-+|.+.-..|+|+++-.+++..+++.. .-+...++--..|+. .|-..+.=.+.+.+++. ...+ .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g-~ 361 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG-E 361 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-c
Confidence 45677788888999999999999887541 002233332222221 12223333333333332 2111 1
Q ss_pred CchhhHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHH
Q 026072 79 KNEEHVSLVKDYRSKV---------ESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAA 149 (244)
Q Consensus 79 ~~~~~~~~i~~yk~ki---------~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~ 149 (244)
.+ ..+..++..+ -+|=..+-..+|.+.....=. .+...-.+++.|-.+|+|- .-
T Consensus 362 ~~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~-----------k~ 424 (508)
T KOG1840|consen 362 DN----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEEL-----------KK 424 (508)
T ss_pred cc----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHh-----------cc
Confidence 11 0111122222 134455556666655443322 1233456777776666432 12
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
.+.|.+.|.+|..+. +...|.||--++..+|.++- |+-+|+.++|++++..
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEK 475 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHH
Confidence 345889999999999 78999999999999999876 5668999999999998
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=47.42 E-value=2.9e+02 Score=27.20 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 8 ~~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
-...++.+....|+|++++..+++.+.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677888888888888888888876
No 32
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.07 E-value=45 Score=30.96 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=40.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhcCCcchHhHHHHHHHHHhhHhhhhh
Q 026072 183 SVFYYEILNSSEKACTMAKQEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 235 (244)
Q Consensus 183 SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 235 (244)
+-.|-+ .|.+.+|+++.+. ++ -+|.|+|++++.-+.++-.++||+..=.+
T Consensus 286 a~~yle-~g~~neAi~l~qr-~l-tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 286 ARAYLE-AGKPNEAIQLHQR-AL-TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHH-cCChHHHHHHHHH-Hh-hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 334444 6999999999997 43 36789999999999999999999986554
No 33
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=43.83 E-value=75 Score=26.74 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026072 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (244)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 113 (244)
.|++|.|-|.=|....|...-..|.+.|.+..--.+.-.+ .......-++-.++.++++..+.++.+.-||..+
T Consensus 98 iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk-~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 98 LPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKK-LEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999988885311111000 0000001233444556666666666666666543
No 34
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=43.81 E-value=87 Score=26.37 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026072 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (244)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 113 (244)
.|+||.|-|.=|....|...-..|.+.|.+..--.+.-.+ .......-++-.++++++|..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKK-LEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999998885311110000 0000001234455666666666666666666543
No 35
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=42.35 E-value=94 Score=26.39 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026072 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (244)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 113 (244)
.|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 102 iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 102 IPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999998885321111000 0000001234445566666666666666666543
No 36
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=41.09 E-value=88 Score=33.14 Aligned_cols=77 Identities=16% Similarity=-0.010 Sum_probs=46.2
Q ss_pred CchHhHHhhhccccchhh-hhhccch--hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHH
Q 026072 120 GESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (244)
Q Consensus 120 ~eskvfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A 196 (244)
.....||++..|||+.-. |-+.-+. ++-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.++|
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hHHHH
Confidence 345556666777765432 1111111 1112356688899988854 477764 555544555545 99999
Q ss_pred HHHHHHHHHHh
Q 026072 197 CTMAKQEAIAE 207 (244)
Q Consensus 197 ~~iak~~Ai~~ 207 (244)
.+++++ |+.-
T Consensus 169 ~~m~~K-AV~~ 178 (906)
T PRK14720 169 ITYLKK-AIYR 178 (906)
T ss_pred HHHHHH-HHHH
Confidence 999999 5443
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=39.10 E-value=1.1e+02 Score=20.15 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHh
Q 026072 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKN 56 (244)
Q Consensus 7 e~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn 56 (244)
+.+..+|.++-+.|+|++++.++++.++ .+ |. +..=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~-p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LD-PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CC-CHHHHHHHHHHHHH
Confidence 3566789999999999999999999998 43 33 34444444444443
No 38
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.40 E-value=44 Score=23.51 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 152 NTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 152 ~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
.|...|+++++.. |++| .-...++.+.-||. .|+.++|+.+.++
T Consensus 7 ~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~-~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 7 NAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQ-QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHH-TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 3444455544433 2233 33344444555554 4667777666654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=36.93 E-value=79 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhh
Q 026072 11 YLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
.+|.|+...+++++++.+..+++.
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 577788888888888888888876
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=36.87 E-value=5.7e+02 Score=27.60 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHH
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVK 88 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~ 88 (244)
++.+|.+..+.|+|++++.+++++++ .. |+ +.+=+.-+..+|... +....+...+..+.+......+....-..-
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~--~~-P~-~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLT--RE-PG-NADARLGLIEVDIAQ-GDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCChHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHhhcC
Q 026072 89 DYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDL 168 (244)
Q Consensus 89 ~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 168 (244)
.....=-++-....+.++... |.....-.....+.-.|+.++=.-+ .++|.+.|++|+.-. .+
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~----------~~~A~~~y~~Al~~~--~~ 743 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQ----------PQQALETYKDAMVAS--GI 743 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhc--CC
Q ss_pred CCCCc
Q 026072 169 APTHP 173 (244)
Q Consensus 169 ~pt~p 173 (244)
.|..|
T Consensus 744 ~~~~p 748 (1157)
T PRK11447 744 TPTRP 748 (1157)
T ss_pred CCCCC
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=36.51 E-value=2.1e+02 Score=22.57 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHH
Q 026072 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSL 86 (244)
Q Consensus 7 e~~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~ 86 (244)
.-...++...-..|+|+.++..+.+.+. . .+-+..-...++..|-.. +....+...+........... ......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~--~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~-~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--H--DPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG-DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 3456778888888999999999999987 3 233444555555555433 444444444433222111110 011111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 026072 87 VKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (244)
Q Consensus 87 i~~y-k~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (244)
..-| ...=-++-...+..++.. |.. .....+ +.. .|..|. ..++ .+.|...|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~-~~~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARS-LEN-AGLCAL-----KAGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHH-HHH-HHHHHH-----HcCC-----HHHHHHHHHHHHHh--
Confidence 1111 111112333344444321 110 011111 111 233321 1111 35578888887753
Q ss_pred hcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
.|.+| ....+.+..++. .|+.++|+...++
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~ 194 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLER 194 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 33343 344456666665 7999999998887
No 42
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.60 E-value=2.8e+02 Score=24.10 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=44.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccCchhhHHHHHHH
Q 026072 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDY 90 (244)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~y 90 (244)
|+++|..+-.||.-+-.....-+ +...+|-.-+-..++.-+...+..+|.-.. +-.+ .-..++ -
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~S-Le~~Le-Q 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQS-LEESLE-Q 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHH-HHHHHH-H
Confidence 66777777777766544333222 233455555556666666666666665421 0000 000111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026072 91 RSKVESELSDVCGSILKLLD 110 (244)
Q Consensus 91 k~ki~~EL~~~c~eii~lid 110 (244)
+.+=..||..||+|+|.=++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22233799999999987543
No 43
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.44 E-value=2.7e+02 Score=23.19 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhh
Q 026072 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS 60 (244)
Q Consensus 24 Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~ 60 (244)
..++..+++++ .. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~e--e~-eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIE--ED-EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHH--Hh-hcCCHHHHHHHHhhhHHHhhc
Confidence 45667778887 33 899999999999999988753
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=33.49 E-value=71 Score=16.16 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
+..+|.+..+.++|++++.++.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998886
No 45
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.20 E-value=59 Score=20.38 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=26.7
Q ss_pred ccchhhhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 026072 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (244)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 171 (244)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 455556777665443 4568888999999998888874
No 46
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=32.15 E-value=2.7e+02 Score=22.36 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHH------hCCHHHHHHHHHH--HHHHhhhhcCCcchHhHHHH
Q 026072 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEI------LNSSEKACTMAKQ--EAIAELDTLGEESYKDSTLI 222 (244)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi------~~~~~~A~~iak~--~Ai~~ld~l~ee~~~ds~~i 222 (244)
+.|..+|++|+.+ .|.++ ....+.+..++.. .++.+.|....++ +.....-.++.+.|.++...
T Consensus 89 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 160 (172)
T PRK02603 89 DKALEYYHQALEL-----NPKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160 (172)
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHH
Confidence 5578888888864 23332 2233444444432 2445556555555 22222223445555555544
Q ss_pred HHH
Q 026072 223 MQL 225 (244)
Q Consensus 223 lql 225 (244)
+..
T Consensus 161 ~~~ 163 (172)
T PRK02603 161 LKT 163 (172)
T ss_pred HHh
Confidence 433
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=32.08 E-value=1.5e+02 Score=19.39 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 026072 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (244)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~ 69 (244)
-+|...-+.|+|++++..+++++. . .+-+.+=+..+..++- ..+....|...+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--Q--DPDNPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--C--STTHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--H--CCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 467888899999999999999997 3 3336666666666655 3344444444443
No 48
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.39 E-value=69 Score=21.16 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=33.8
Q ss_pred HhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh
Q 026072 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE 75 (244)
Q Consensus 18 q~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k~ 75 (244)
+.|+|++++..+++++. .. |. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RN-PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HT-TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HC-CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 45778888888888776 22 33 666666666666554 66667777777665554
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.43 E-value=89 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcChHHHHHHHHH
Q 026072 10 VYLAKLAEQAERYEEMVKFMDS 31 (244)
Q Consensus 10 i~~Aklaeq~ery~Dm~~~mk~ 31 (244)
..+|+..-+.|+|+++++++.+
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 3446666666666666666543
No 50
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=29.39 E-value=1.3e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH----HHhHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYY 187 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg----L~LN~SVF~y 187 (244)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665433 58999999998 5667777643
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=28.81 E-value=3.4e+02 Score=22.52 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCCc--chHhHHHH
Q 026072 145 ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGEE--SYKDSTLI 222 (244)
Q Consensus 145 ~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ee--~~~ds~~i 222 (244)
....--+.|.++|..|.. |.|.||. ...|.++-+.- +|+.+.|.+-=+. ||.--...++. -...+...
T Consensus 80 Q~~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~~aF~~-Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 80 QAQKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAIKALKA-VVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred HHHhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHHHHHHH-HHHHhccChhHHHHHHHHHHH
Confidence 334446778999999875 4455553 24555555554 7999988876665 55544333332 23336666
Q ss_pred HHHHHh
Q 026072 223 MQLLRD 228 (244)
Q Consensus 223 lqlLrd 228 (244)
+..|.|
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 666655
No 52
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=28.79 E-value=1.1e+02 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 026072 13 AKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK 74 (244)
Q Consensus 13 Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~ie~k 74 (244)
+.++-+.++|+.+++++..++. .+ |+ +..-+.....+|-. .+..-.|.+.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LD-PD-DPELWLQRARCLFQ-LGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hC-cc-cchhhHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 4566677888888888888876 43 43 55555444444432 34445555555544333
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=28.29 E-value=5.8e+02 Score=25.06 Aligned_cols=26 Identities=4% Similarity=-0.012 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
...++.+..+.|+|++++.++.+.++
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34555666666666666666666554
No 54
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=27.79 E-value=90 Score=23.12 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=32.1
Q ss_pred hhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHHhHHHHHH
Q 026072 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFY 186 (244)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~p~rLgL~LN~SVF~ 186 (244)
.+++.|-|+-+.++..- .|+.|-.+|.+ .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 46788888888776432 35666677755 79999999999999887765
No 55
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=27.57 E-value=1e+02 Score=19.86 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 026072 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (244)
Q Consensus 10 i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls 51 (244)
+-+|+..-..|.++.+-+.+.+++. .+.++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 4689999999999999999999996 332334455555553
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.57 E-value=3.3e+02 Score=21.62 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIA 206 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~ 206 (244)
.+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...++ |+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~-Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQ-ALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHH
Confidence 356888899888763 2333333455666666554 7999999999988 543
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=26.35 E-value=2.8e+02 Score=22.22 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 026072 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIA 206 (244)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~ 206 (244)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++ |+.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~-al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQ-ALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHH
Confidence 468889999887642 222223355666666665 7999999998887 443
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=24.94 E-value=7.6e+02 Score=25.28 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 026072 9 YVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (244)
Q Consensus 9 ~i~~Aklaeq~ery~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~ 69 (244)
...+|.+.-..|++++++..+++++. .. |+ +.+ ...+..++.. .+....+...+.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~--~~-P~-~~~-~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVS--GA-PD-KAN-LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHH-HHHHHHHHHH-CCCHHHHHHHHH
Confidence 34445555555555555555555554 21 22 222 4444444442 244444444443
No 59
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.90 E-value=4.8e+02 Score=22.98 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH-HHhHHHHHHHHHhCCHHHHHHHHHH--HHH---HhhhhcCCcchHhHHHHH
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEILNSSEKACTMAKQ--EAI---AELDTLGEESYKDSTLIM 223 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg-L~LN~SVF~yEi~~~~~~A~~iak~--~Ai---~~ld~l~ee~~~ds~~il 223 (244)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+++-.+.--++.+.|+..-++ +.+ ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3557778888877765 78888888887 7789999999853389999998888 333 233333333323345667
Q ss_pred HHHHhhHhhhhh
Q 026072 224 QLLRDNLTLWTS 235 (244)
Q Consensus 224 qlLrdNl~~W~~ 235 (244)
++|-...-.|..
T Consensus 88 ~~La~~~l~~~~ 99 (278)
T PF08631_consen 88 RLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHcCCC
Confidence 777777666654
No 60
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.22 E-value=2.9e+02 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.463 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHhhhh----hhhhHHHHHHHHhhhh
Q 026072 40 TELTVEERNLLSVAYKNVIG----SLRAAWRIISSIEQKE 75 (244)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~----~~R~s~r~l~~ie~k~ 75 (244)
..-+.+-|.+...+..+++. ..|++|+++-.+-...
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 44677888888889888887 6699999997765543
No 61
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=23.96 E-value=3.9e+02 Score=23.27 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhh-----hhHHHHHHH
Q 026072 45 EERNLLSVAYKNVIGSL-----RAAWRIISS 70 (244)
Q Consensus 45 eERnLls~ayKn~i~~~-----R~s~r~l~~ 70 (244)
++...+-+-..++|+.+ |.|+|+|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888999976 577888753
No 62
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.84 E-value=4.6e+02 Score=23.79 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhcCCcchHhH
Q 026072 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIAELDTLGEESYKDS 219 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~~ld~l~ee~~~ds 219 (244)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|. +=++.-...+....+
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa--~lE~n~~~P~~~~~~ 194 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQA--LLEFNFFRPESLSSS 194 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHH--HHHHHcCCccccccc
Confidence 344566666666555432 333456889999999999998 6999999999984 444433333222222
Q ss_pred HHHHHHHHhhHhhhhhcccc
Q 026072 220 TLIMQLLRDNLTLWTSDMQE 239 (244)
Q Consensus 220 ~~ilqlLrdNl~~W~~e~~~ 239 (244)
..- +.++.=-.=|.++.+-
T Consensus 195 ~~~-~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 195 SFS-ERLESFEEFWESEVPR 213 (321)
T ss_pred cHH-HHHHHHHHHhCcCCCC
Confidence 100 3444444678876553
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=23.56 E-value=6.5e+02 Score=25.88 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhhh-hhhhhHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 026072 42 LTVEERNLLSVAYKNVI-GSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAG 120 (244)
Q Consensus 42 L~~eERnLls~ayKn~i-~~~R~s~r~l~~ie~k~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~ 120 (244)
|++.|--||-.+.|..= .+++++++.+.+|..+-...|.+-..+-+.-+.--=.+|-...|.-.+. .+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----------~d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----------NDL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----------cCc
Confidence 88899999999998875 4579999999998876555554432222222211112333333333322 122
Q ss_pred chHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHhhcCC--------------------------CCCch
Q 026072 121 ESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLA--------------------------PTHPI 174 (244)
Q Consensus 121 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~--------------------------pt~p~ 174 (244)
.| -++|+.-|=+||=--+ -..|..||+.|+.+.+.+++ .-.|-
T Consensus 73 ~S-~vCwHv~gl~~R~dK~----------Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKK----------YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhh----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3577877777763222 23467777777755433221 11122
Q ss_pred hHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHhhhhcCCcchHhHHHHH
Q 026072 175 RLGLALNFSVFYYEILNSSEKACTMAKQ-EAIAELDTLGEESYKDSTLIM 223 (244)
Q Consensus 175 rLgL~LN~SVF~yEi~~~~~~A~~iak~-~Ai~~ld~l~ee~~~ds~~il 223 (244)
+..--+-|+|=++. .|+...|..|..+ .-..+ ..++.+.|.-+..+|
T Consensus 142 ~ra~w~~~Avs~~L-~g~y~~A~~il~ef~~t~~-~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 142 QRASWIGFAVAQHL-LGEYKMALEILEEFEKTQN-TSPSKEDYEHSELLL 189 (700)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHH
Confidence 22222223333443 5889999999888 22222 456666666666654
No 64
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=2e+02 Score=29.59 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhH-HHHhHHHHHHHHHhCC
Q 026072 150 AENTMLSYKAAQDIALTDLAPTHPIRL-GLALNFSVFYYEILNS 192 (244)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rL-gL~LN~SVF~yEi~~~ 192 (244)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--++
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 356789999999999999999988777 4578988888885443
No 65
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.84 E-value=2.4e+02 Score=24.67 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCC-----CchHhHHhhhccccchhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 026072 94 VESELSDVCGSILKLLDSHLVPSATA-----GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (244)
Q Consensus 94 i~~EL~~~c~eii~lid~~Lip~~~~-----~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (244)
..+.-...-++.+.+....|-|.... ..-.|||+.+.||. ..+++-|.++|..|..-.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~-------------~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDP-------------EKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-H-------------HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHHHHhhh
Confidence 44444555567777888776554311 14557887766554 457888888888887654
No 66
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.01 E-value=1.7e+02 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHhcChHHHHHHHHHHhh
Q 026072 13 AKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 13 Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
..=.=|.|+|+++.+|+++++.
T Consensus 30 I~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334477999999999999985
No 67
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=21.94 E-value=2.5e+02 Score=23.17 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=28.8
Q ss_pred HHhhhhhhhhHHHHHHH-----Hhhh------hhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026072 54 YKNVIGSLRAAWRIISS-----IEQK------EEGRKNEEHVSLVKDYRSKVESELSDVCGSIL 106 (244)
Q Consensus 54 yKn~i~~~R~s~r~l~~-----ie~k------~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii 106 (244)
+|++|++.|.||..+.. +.|+ ...++.+. -..+|.+.+ +|...+|+.|-
T Consensus 10 vK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~---~~~RFdK~l-EeFysiCDQIE 69 (148)
T PF11568_consen 10 VKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDE---PVPRFDKNL-EEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC---cHHHHHHHH-HHHHHHHHHHH
Confidence 68888888888877642 3343 11122222 234565555 57888888764
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=21.20 E-value=9e+02 Score=24.76 Aligned_cols=27 Identities=7% Similarity=0.220 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHhh
Q 026072 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (244)
Q Consensus 8 ~~i~~Aklaeq~ery~Dm~~~mk~ii~ 34 (244)
-+..+|.++...|++++++.++++++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777778888888888888888776
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=21.09 E-value=2.9e+02 Score=23.16 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHhHHHHHHH-HHHhcC--hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 026072 6 REQYVYLAKL-AEQAER--YEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (244)
Q Consensus 6 re~~i~~Akl-aeq~er--y~Dm~~~mk~ii~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~r~l~~i 71 (244)
-+-+..+|.+ ..+.|+ ++++...+.+++. .+ |. +.+=+.+|..++-. .+....|......+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~d-P~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~a 170 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALA--LD-AN-EVTALMLLASDAFM-QADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hC-CC-ChhHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3455666775 467777 5888888888886 43 33 45566677666643 45555555555443
No 70
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.73 E-value=1e+02 Score=24.85 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCc-------hHhHHhhhccc
Q 026072 96 SELSDVCGSILKLLDSHLVPSATAGE-------SKVFYLKMKGD 132 (244)
Q Consensus 96 ~EL~~~c~eii~lid~~Lip~~~~~e-------skvfy~KmkgD 132 (244)
+=+.++|+||+.+|...+......++ .|-||+|+.-+
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 45678899999999888854433332 56688885433
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=20.72 E-value=5.9e+02 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=17.1
Q ss_pred hHHHHhHHHHHHHHHhCCHHHHHHHHHH
Q 026072 175 RLGLALNFSVFYYEILNSSEKACTMAKQ 202 (244)
Q Consensus 175 rLgL~LN~SVF~yEi~~~~~~A~~iak~ 202 (244)
+.....+.+.++.. .|+.++|+.+.++
T Consensus 185 ~~~~~~~la~~~~~-~G~~~~A~~~~~~ 211 (355)
T cd05804 185 RGHNWWHLALFYLE-RGDYEAALAIYDT 211 (355)
T ss_pred hHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 33444556665554 6888888877776
No 72
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=20.45 E-value=2.6e+02 Score=20.08 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhHH----HHhHHHHHH
Q 026072 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFY 186 (244)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~p~rLg----L~LN~SVF~ 186 (244)
..+..+-+..+.|++-. ..|.||..|. ..-+||+|+
T Consensus 12 ~~~~~~~~~l~~a~~~l---~~~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 12 KPADDANQAVNDSLAAL---DLPNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred HHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566777777777543 6778998876 445677764
No 73
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=20.06 E-value=2.7e+02 Score=25.75 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 026072 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEAIA 206 (244)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yEi~~~~~~A~~iak~~Ai~ 206 (244)
+.|.+.|.+|+.+. |-...+.+|.+..|.. +|+.+.|+..+++ |+.
T Consensus 19 ~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~-Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDLD--------PNNAELYADRAQANIK-LGNFTEAVADANK-AIE 64 (356)
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHH
Done!