BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026073
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
          Length = 1204

 Score = 36.6 bits (83), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 22/255 (8%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGL---NNGIPPIEQSGHFNRVDVLFLKDLDAFASKSM 57
            +EE+L+R LTRE+  L++    S     ++  PP +        + +   ++   A   +
Sbjct: 957  LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDD-----EEMMATEVTPSAMAEL 1011

Query: 58   VGF---LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVS 114
                  L+KH+D+    L  +  +  W D  +  + +S     +L  + S  + L   V+
Sbjct: 1012 TDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAVT 1070

Query: 115  KDLFSAIIRGLALES-NAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAF 173
              LF+++++GL +   +    A LV L  +I+  +  R    R V+  +P I    L  F
Sbjct: 1071 W-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQF 1129

Query: 174  E-----DALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSTRPRSSDNAP 228
            +      +L K A  R + Q  R  L++G          +K V+ I N+ +  + +    
Sbjct: 1130 DCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPML 1186

Query: 229  ENRTEEGESIGLAAI 243
            E    + +  GLA I
Sbjct: 1187 ETEVLDNDGGGLATI 1201


>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
           Aquifex Aeolicus Vf5
 pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
           Aquifex Aeolicus Vf5
          Length = 195

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 17/62 (27%)

Query: 1   MEEKLLRDLTREICSLL-----STMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASK 55
           +EEK++ DL R+   +L     ST+A  G   G+            DV F+K+L+ FA++
Sbjct: 72  IEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGL------------DVEFIKNLNEFATR 119

Query: 56  SM 57
            +
Sbjct: 120 GV 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,032,581
Number of Sequences: 62578
Number of extensions: 206637
Number of successful extensions: 529
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 7
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)