Query 026073
Match_columns 244
No_of_seqs 118 out of 141
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a6p_A Exportin-5; exportin-5, 100.0 4.7E-34 1.6E-38 297.9 12.3 204 1-207 957-1167(1204)
2 3m1i_C Exportin-1; heat repeat 95.7 0.17 5.8E-06 51.6 14.8 136 65-200 844-1007(1049)
3 2x1g_F Cadmus; transport prote 95.1 0.12 4E-06 51.9 10.8 131 68-200 827-966 (971)
4 2x19_B Importin-13; nuclear tr 94.7 0.07 2.4E-06 53.2 7.9 131 68-200 815-954 (963)
5 3ibv_A Exportin-T; karyopherin 77.6 4.3 0.00015 41.6 7.2 132 65-201 835-979 (980)
6 4hat_C Exportin-1; heat repeat 66.9 72 0.0025 32.8 13.3 38 161-198 967-1005(1023)
7 2lr2_A Immunoglobulin G-bindin 61.9 1 3.5E-05 32.8 -1.1 53 160-212 30-82 (88)
8 1x3l_A Hypothetical protein PH 57.6 10 0.00035 35.8 4.6 67 158-224 135-204 (440)
9 2b8n_A Glycerate kinase, putat 56.2 15 0.0005 34.6 5.4 68 157-224 138-209 (429)
10 3gjx_A Exportin-1; transport, 53.0 39 0.0013 35.1 8.5 38 160-197 986-1024(1073)
11 1z00_B DNA repair endonuclease 50.3 11 0.00037 27.3 2.8 29 151-179 12-40 (84)
12 1w9c_A CRM1 protein, exportin 36.7 1.9E+02 0.0066 25.8 9.4 39 160-198 278-317 (321)
13 2a1j_A DNA repair endonuclease 35.8 16 0.00055 24.7 1.7 25 155-179 2-26 (63)
14 4htp_A DNA ligase 4; helical d 35.7 55 0.0019 27.8 5.4 61 136-206 124-187 (240)
15 3lys_A Prophage PI2 protein 01 33.4 1.2E+02 0.0042 21.1 7.2 39 161-199 47-88 (112)
16 1irz_A ARR10-B; helix-turn-hel 33.3 93 0.0032 21.4 5.3 38 135-172 12-51 (64)
17 2q0z_X Protein Pro2281; SEC63, 28.2 1E+02 0.0034 27.2 6.1 58 114-175 122-179 (339)
18 2abk_A Endonuclease III; DNA-r 23.5 2.4E+02 0.0083 22.9 7.3 62 114-177 68-129 (211)
19 3im1_A Protein SNU246, PRE-mRN 22.7 1.3E+02 0.0045 26.2 5.7 57 114-175 119-175 (328)
20 2rcc_A Ribonucleoside-diphosph 22.5 1.6E+02 0.0056 26.0 6.4 72 105-179 218-290 (346)
21 3ee4_A Probable ribonucleoside 20.5 1.9E+02 0.0064 25.6 6.3 70 105-179 209-280 (323)
22 2jtt_C Calcyclin-binding prote 20.4 95 0.0033 18.8 3.0 28 169-196 7-34 (35)
No 1
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=297.94 Aligned_cols=204 Identities=21% Similarity=0.283 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCccchhhhh-hcchhhhhhhhHHHHHhcCcccHHHHHHHHhhhh
Q 026073 1 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLF-LKDLDAFASKSMVGFLLKHKDLALPALQISLEAF 79 (244)
Q Consensus 1 leE~lLRqLTr~vv~ll~~~~~p~~~~~~~s~~~~~~~~~~~~s~-~~~~~~~~~~~L~~~iL~~~~i~~plL~~~~~~l 79 (244)
|||+|||||||++|+++..++.++.+..+.+..+.+.+++.++++ ..+......++||+|+|+|+++++|+|.+|+|+|
T Consensus 957 ~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l 1036 (1204)
T 3a6p_A 957 LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSL 1036 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBC------------------------------CBCHHHHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHh
Confidence 589999999999999999988877433333322222233333333 2333344558999999999999999999999999
Q ss_pred ccccCc-chhhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHHHhc-ccchHhhHHHHHHHHHHHHHHhcCCCccHHH
Q 026073 80 TWTDGE-AVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLA-LESNAVISADLVGLCREIFIYMCDRDPAPRQ 157 (244)
Q Consensus 80 ~wkDt~-~~~~~~sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L~-~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~ 157 (244)
+|+||+ ||.+++.||..++ +.+.. +..+.++ +.++|+++|+||. ...+.++|+|+++|++.||+.|+|++++||+
T Consensus 1037 ~~~D~~~~~~~~~~~~~~~v-~~~~~-~~~~~~~-~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~ 1113 (1204)
T 3a6p_A 1037 AWKDTLSCQRTTSQLCWPLL-KQVLS-GTLLADA-VTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRA 1113 (1204)
T ss_dssp TSSCHHHHHHHHHHTHHHHH-TTSCS-SCCCHHH-HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHH
T ss_pred cccCcHHHHHHHHHHHHHHH-HHHhc-ccCchHH-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHH
Confidence 999999 7788888887774 44332 2223333 5555555555554 3333449999999999999999999999999
Q ss_pred HHHhCCCCCHHhHHHHHHHHhcCC----ChHHHHHHHHHHHhccCCCchHHHhh
Q 026073 158 VLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSLLVSGTGNNLKALAA 207 (244)
Q Consensus 158 vL~sLP~I~~~~l~~f~~~L~~~~----s~K~QR~l~~~LL~~~~g~~l~a~~~ 207 (244)
||++||||+++++++|+++|.++. ++|+||++|+|||.+++|+++..+..
T Consensus 1114 vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~~~~~~~~ 1167 (1204)
T 3a6p_A 1114 VMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFR 1167 (1204)
T ss_dssp HHTTSSSCCHHHHHHHHHHSSCC-------------------------------
T ss_pred HHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCcHHHhhc
Confidence 999999999999999999998755 49999999999999999999777743
No 2
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.74 E-value=0.17 Score=51.64 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=84.9
Q ss_pred cccHHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhccCc-hhHHHHH---HHHHHHHHHHHhcccchHhhHHHHHHH
Q 026073 65 KDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNN-IELQQFV---SKDLFSAIIRGLALESNAVISADLVGL 140 (244)
Q Consensus 65 ~~i~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~-~~l~efi---~~ev~~a~L~~L~~~~f~d~q~eL~~L 140 (244)
+.....++..+..++.-+|...+..++.|..-++...-...+ .....|+ ...+++.++.+|.+..+.........+
T Consensus 844 ~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~ 923 (1049)
T 3m1i_C 844 PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL 923 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHH
Confidence 333455666677777767766666666776666554432112 2233333 245556666666666655555555556
Q ss_pred HHHHHHHh------cCCCc------------cHHH----HH-HhCCCCCHHhHHHHHHHHhcCCChHHH-HHHHHHHHhc
Q 026073 141 CREIFIYM------CDRDP------------APRQ----VL-LSLPCITPQDLLAFEDALTKTASPREQ-KQHMRSLLVS 196 (244)
Q Consensus 141 ~~~Iy~~l------~p~~~------------~pr~----vL-~sLP~I~~~~l~~f~~~L~~~~s~K~Q-R~l~~~LL~~ 196 (244)
++.++... .|.|+ ..++ +| .+.|++++++++.|-+.|.+...++.. |+++++|+..
T Consensus 924 l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~ 1003 (1049)
T 3m1i_C 924 LMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQ 1003 (1049)
T ss_dssp HHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHh
Confidence 66655322 22321 1223 33 557999999999999999887778876 9999999999
Q ss_pred cCCC
Q 026073 197 GTGN 200 (244)
Q Consensus 197 ~~g~ 200 (244)
++|-
T Consensus 1004 ~~~~ 1007 (1049)
T 3m1i_C 1004 IKEV 1007 (1049)
T ss_dssp HTSS
T ss_pred hhhh
Confidence 9654
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.06 E-value=0.12 Score=51.92 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhccCchhHHHHHH---HHHHHHHHHHhcccchHhhHHHHHHHHHHH
Q 026073 68 ALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVS---KDLFSAIIRGLALESNAVISADLVGLCREI 144 (244)
Q Consensus 68 ~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~efi~---~ev~~a~L~~L~~~~f~d~q~eL~~L~~~I 144 (244)
+.+++.+...++.-.|...+.-++.|.+.++.... ..+.+++|+. ..+...++.++....-.....+++.++..+
T Consensus 827 l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l 904 (971)
T 2x1g_F 827 YDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR--NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAM 904 (971)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence 57788888888887777666666678777655421 2344555443 455555555553332233444555555555
Q ss_pred HHHhcCCC-ccHHHHHH--hCC--CCCHHhHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCC
Q 026073 145 FIYMCDRD-PAPRQVLL--SLP--CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVSGTGN 200 (244)
Q Consensus 145 y~~l~p~~-~~pr~vL~--sLP--~I~~~~l~~f~~~L~~~~-s~K~QR~l~~~LL~~~~g~ 200 (244)
+..+...+ +...++|. .+| ++++++.++|-++|.+.+ +.|.=|.++++|...++|-
T Consensus 905 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~ 966 (971)
T 2x1g_F 905 NRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGL 966 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCc
Confidence 54432111 12334443 577 489999999999996654 7888899999999998764
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.65 E-value=0.07 Score=53.25 Aligned_cols=131 Identities=10% Similarity=0.151 Sum_probs=83.6
Q ss_pred HHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhccCchhHHHH---HHHHHHHHHHHHhcccchHhhHHHHHHHHHHH
Q 026073 68 ALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQF---VSKDLFSAIIRGLALESNAVISADLVGLCREI 144 (244)
Q Consensus 68 ~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~ef---i~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~I 144 (244)
+.+++..+..++.-.|...+..++.|..-++.... ....+.+| .+..++..++.++.+........++..++..+
T Consensus 815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l 892 (963)
T 2x19_B 815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG--EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFAL 892 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT--SSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence 77788888888886776666666666666543211 12233333 25677777777776543333445556555666
Q ss_pred HHHhcCCCc-cHHHHHH--hCC--CCCHHhHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCC
Q 026073 145 FIYMCDRDP-APRQVLL--SLP--CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVSGTGN 200 (244)
Q Consensus 145 y~~l~p~~~-~pr~vL~--sLP--~I~~~~l~~f~~~L~~~~-s~K~QR~l~~~LL~~~~g~ 200 (244)
+..+...+. ...++|. .+| +++++..++|-++|.+.+ ..|.=|..+++|+..++|-
T Consensus 893 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 893 NKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp HHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCc
Confidence 554221111 1233442 588 899999999999997665 7888899999999998763
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.62 E-value=4.3 Score=41.59 Aligned_cols=132 Identities=15% Similarity=0.111 Sum_probs=71.2
Q ss_pred cccHHHHHHHHhhh-hccccCcchhhhhhhhhHHHHHHhccC-chhHHHHHHHHHHHHHHHHhcccch--Hh-----hHH
Q 026073 65 KDLALPALQISLEA-FTWTDGEAVTKVSSFCSAVVLLAIQSN-NIELQQFVSKDLFSAIIRGLALESN--AV-----ISA 135 (244)
Q Consensus 65 ~~i~~plL~~~~~~-l~wkDt~~~~~~~sf~~~lv~~~i~~~-~~~l~efi~~ev~~a~L~~L~~~~f--~d-----~q~ 135 (244)
...++.++..+.|. ....|+-+...++.|.+-++..-..++ -+-+.+|+-+ +.+.|......|.| .| .-.
T Consensus 835 ~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~ 913 (980)
T 3ibv_A 835 QVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLG 913 (980)
T ss_dssp HTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHH
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHH
Confidence 34556666666643 346888866666677666655432111 2349999999 99999999977776 35 446
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHh--CC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCc
Q 026073 136 DLVGLCREIFIYMCDRDPAPRQVLLS--LP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNN 201 (244)
Q Consensus 136 eL~~L~~~Iy~~l~p~~~~pr~vL~s--LP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~ 201 (244)
|++.+...||...++ .--+.|.+ +| |+.++-.+.|-++|.+ ...|.=|.-|+.|+...+|.+
T Consensus 914 e~~~~~k~~~~~~g~---~~~~~l~~~~lp~~~~~~~~~~~~~~~l~~-~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 914 ELAGLQKIILEKLGD---IYKSYLVTVYFPTVNFPDVMASEYLQALSN-LDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHTTTTC----CCHHHHHHHC-----------------CHHHHC--
T ss_pred HHHHHHHHHHHhcCH---HHHHHHHHhcCCcCCCCHHHHHHHHHHHhc-cchhhHHHHHHHHHHHhhcCC
Confidence 999999999999874 45667754 67 6778888999999954 335666777777777776654
No 6
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=66.88 E-value=72 Score=32.78 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=33.4
Q ss_pred hCCCCCHHhHHHHHHHHhcC-CChHHHHHHHHHHHhccC
Q 026073 161 SLPCITPQDLLAFEDALTKT-ASPREQKQHMRSLLVSGT 198 (244)
Q Consensus 161 sLP~I~~~~l~~f~~~L~~~-~s~K~QR~l~~~LL~~~~ 198 (244)
+.|+++++.+..|-..|-+. ...+.=|.+++|||...+
T Consensus 967 ~fp~~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~k 1005 (1023)
T 4hat_C 967 AFPHLTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIK 1005 (1023)
T ss_dssp HCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhH
Confidence 67999999999999999765 668888999999998874
No 7
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=61.91 E-value=1 Score=32.78 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred HhCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHhhhcccc
Q 026073 160 LSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVN 212 (244)
Q Consensus 160 ~sLP~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~~~k~~~ 212 (244)
+-|||++++.-..|...|....+..+||+=|..=++.-..++-.-|+++|..|
T Consensus 30 l~lPNLneeQrnafiqSLkDDp~veeq~ngfiqslkddpSqSanlLaEAKKLN 82 (88)
T 2lr2_A 30 LHLPNLNEEQRNAFIQSLKDDSYIDTNNDGAYEGDELSGSQSANLLAEAKKLN 82 (88)
T ss_dssp HTCSSCCHHHHHHHHHHHHHTSCCCTTCSSSCCGGGSCCSCHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhccCcchhhhcccchhccccccchhHHHHHHHHHcc
Confidence 46999999999999999988777778887777666666677766777777655
No 8
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=57.56 E-value=10 Score=35.78 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=55.6
Q ss_pred HHHhCC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHhhhcccc-cccccCCCCCCC
Q 026073 158 VLLSLP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVN-VITNVSTRPRSS 224 (244)
Q Consensus 158 vL~sLP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~~~k~~~-~i~~v~~~~~~~ 224 (244)
=|+.+| ||+-+|.++..+.|.++..+-++=+.++|-|..+||-.|-+.+..+-.+ +|.||---+...
T Consensus 135 ALl~~P~~gitL~dk~~~~~~LL~sGA~I~EiN~VRKhLS~iKGGrLA~~apA~vvtLiiSDV~GDdl~~ 204 (440)
T 1x3l_A 135 ALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLAKMIKGTGIVLIISDVVGDNLEA 204 (440)
T ss_dssp HHSCCBCTTCCHHHHHHHHHHHHHTCCCHHHHHHHHHTTBSSTTTHHHHTCSSEEEEEEECCSTTCCTTT
T ss_pred HhhhcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccchHHHHhCCCcEEEEEEecCCCCChhh
Confidence 456666 8999999999999999999999999999999999999987765333233 888888777665
No 9
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=56.22 E-value=15 Score=34.60 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred HHHHhCC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHhh-hccc-ccccccCCCCCCC
Q 026073 157 QVLLSLP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAA-QKSV-NVITNVSTRPRSS 224 (244)
Q Consensus 157 ~vL~sLP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~~-~k~~-~~i~~v~~~~~~~ 224 (244)
.=|+.+| ||+-+|.++..+.|.++..+-++=+.++|-|..+||-.|-+.+. .+-. -+|.||---+...
T Consensus 138 SALl~~P~~gitL~dk~~i~~~LL~sGA~I~EiN~VRKhLS~iKGGrLA~~a~pA~vvtLiiSDV~GDdl~~ 209 (429)
T 2b8n_A 138 SSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDV 209 (429)
T ss_dssp HHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHTTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTT
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccHHHHHhcCCCeEEEEEEecCCCCChhh
Confidence 3566777 89999999999999999999999999999999999999877652 3333 3888998777665
No 10
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=53.02 E-value=39 Score=35.12 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=33.3
Q ss_pred HhCCCCCHHhHHHHHHHHhcC-CChHHHHHHHHHHHhcc
Q 026073 160 LSLPCITPQDLLAFEDALTKT-ASPREQKQHMRSLLVSG 197 (244)
Q Consensus 160 ~sLP~I~~~~l~~f~~~L~~~-~s~K~QR~l~~~LL~~~ 197 (244)
.+.|+++++.+..|-..|-+. .....=|.+++|||..+
T Consensus 986 ~~fp~~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ 1024 (1073)
T 3gjx_A 986 SAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQI 1024 (1073)
T ss_dssp HHCTTSCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 567999999999999999765 56788899999999887
No 11
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=50.28 E-value=11 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=23.6
Q ss_pred CCccHHHHHHhCCCCCHHhHHHHHHHHhc
Q 026073 151 RDPAPRQVLLSLPCITPQDLLAFEDALTK 179 (244)
Q Consensus 151 ~~~~pr~vL~sLP~I~~~~l~~f~~~L~~ 179 (244)
-++.|..+|.+||||.+....++-..+.+
T Consensus 12 ~N~~~~s~L~~IpGIG~kr~~~LL~~FgS 40 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVNAKNCRSLMHHVKN 40 (84)
T ss_dssp SCHHHHHHHHTCSSCCHHHHHHHHHHSSC
T ss_pred ccccHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 46789999999999999988777666544
No 12
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=36.66 E-value=1.9e+02 Score=25.80 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.0
Q ss_pred HhCCCCCHHhHHHHHHHHhcC-CChHHHHHHHHHHHhccC
Q 026073 160 LSLPCITPQDLLAFEDALTKT-ASPREQKQHMRSLLVSGT 198 (244)
Q Consensus 160 ~sLP~I~~~~l~~f~~~L~~~-~s~K~QR~l~~~LL~~~~ 198 (244)
.+-|+++++.+..|-.-|-+. .....=|.+++|||-.++
T Consensus 278 ~~Fp~l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqiK 317 (321)
T 1w9c_A 278 SAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 317 (321)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 346999999999999999765 456677899999997654
No 13
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=35.82 E-value=16 Score=24.67 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCHHhHHHHHHHHhc
Q 026073 155 PRQVLLSLPCITPQDLLAFEDALTK 179 (244)
Q Consensus 155 pr~vL~sLP~I~~~~l~~f~~~L~~ 179 (244)
|..+|.++|||.+....++-..+.+
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~~Fgs 26 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHHHCSS
T ss_pred HHhHHHcCCCCCHHHHHHHHHHcCC
Confidence 5578999999999988777766544
No 14
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=35.74 E-value=55 Score=27.81 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHHhcC---CChHHHHHHHHHHHhccCCCchHHHh
Q 026073 136 DLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT---ASPREQKQHMRSLLVSGTGNNLKALA 206 (244)
Q Consensus 136 eL~~L~~~Iy~~l~p~~~~pr~vL~sLP~I~~~~l~~f~~~L~~~---~s~K~QR~l~~~LL~~~~g~~l~a~~ 206 (244)
|+...+..+ +..+.+.+ +.+|-++|+.+-.+|++. ++...++.++++|+..+.+.+.|=|.
T Consensus 124 Dlg~va~~~---~~~r~~~~-------~~LTv~~V~~~L~~IA~~~g~~s~~~k~~~l~~Ll~~~t~~E~k~li 187 (240)
T 4htp_A 124 DFAMIAYFV---LKPRCLQK-------GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLI 187 (240)
T ss_dssp CHHHHHHHH---HTTSSCCS-------CCCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHH---HHccCCCC-------CCcCHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 555555554 34444432 679999999999999764 33334458999999999998887764
No 15
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=33.41 E-value=1.2e+02 Score=21.13 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=28.8
Q ss_pred hCCCCCHHhHHHHHHHHhcCCC---hHHHHHHHHHHHhccCC
Q 026073 161 SLPCITPQDLLAFEDALTKTAS---PREQKQHMRSLLVSGTG 199 (244)
Q Consensus 161 sLP~I~~~~l~~f~~~L~~~~s---~K~QR~l~~~LL~~~~g 199 (244)
.+-.|++.++++|...+.+..+ -+.-+..++.++..+..
T Consensus 47 ~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~Av~ 88 (112)
T 3lys_A 47 LISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQCLIE 88 (112)
T ss_dssp BTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999976544 34556667777766643
No 16
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=33.29 E-value=93 Score=21.37 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHH--HhCCCCCHHhHHH
Q 026073 135 ADLVGLCREIFIYMCDRDPAPRQVL--LSLPCITPQDLLA 172 (244)
Q Consensus 135 ~eL~~L~~~Iy~~l~p~~~~pr~vL--~sLP~I~~~~l~~ 172 (244)
.||-.-+...+..|++.-.+|..|| +..||+|.+.|..
T Consensus 12 ~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkS 51 (64)
T 1irz_A 12 HELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVAS 51 (64)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHH
Confidence 4666677788888998888999985 4588999986543
No 17
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=28.24 E-value=1e+02 Score=27.17 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHH
Q 026073 114 SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFED 175 (244)
Q Consensus 114 ~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~vL~sLP~I~~~~l~~f~~ 175 (244)
+..++.|++...........-.-++.|+.-|--.+-+.. +| |.|||+|+++.+.++++
T Consensus 122 a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~-~p---L~Qlp~i~~~~~~~l~~ 179 (339)
T 2q0z_X 122 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKD-SY---LKQLPHFTSEHIKRCTD 179 (339)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTS-CG---GGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC-Cc---eecCCCCCHHHHHHHHh
Confidence 445666666443322222223446667666666665543 33 78999999998888764
No 18
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.52 E-value=2.4e+02 Score=22.91 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHHHH
Q 026073 114 SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL 177 (244)
Q Consensus 114 ~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~vL~sLP~I~~~~l~~f~~~L 177 (244)
..+-+..+|+++. |+..--.-|..++..+...+....+..++-|++||||-+...+-+--.-
T Consensus 68 ~~~~l~~~i~~~G--~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 68 GVEGVKTYIKTIG--LYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHTTST--THHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 3344556666553 2211222344555555555666678889999999999999877776654
No 19
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=22.75 E-value=1.3e+02 Score=26.23 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHHHhCCCCCHHhHHHHHH
Q 026073 114 SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFED 175 (244)
Q Consensus 114 ~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~vL~sLP~I~~~~l~~f~~ 175 (244)
+..++.|++.......... -..++.|+.-|--..-+.. +| |.|||+|+++.+.++++
T Consensus 119 a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~-~p---L~Qlp~i~~~~~~~l~~ 175 (328)
T 3im1_A 119 VVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVD-NP---LRQIPHFNNKILEKCKE 175 (328)
T ss_dssp HHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTS-CG---GGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCC-Cc---eeCCCCCCHHHHHHHHh
Confidence 4566666664432222222 3356677777666666544 34 78999999998877764
No 20
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=22.53 E-value=1.6e+02 Score=26.02 Aligned_cols=72 Identities=10% Similarity=0.164 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHH-HhCCCCCHHhHHHHHHHHhc
Q 026073 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVL-LSLPCITPQDLLAFEDALTK 179 (244)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~vL-~sLP~I~~~~l~~f~~~L~~ 179 (244)
.|..++-.++..+++..++-..+....+.+..+..++...+.. .......++ ..++|++.+++.+|-+..++
T Consensus 218 RDE~~H~~f~~~l~~~l~~e~~~~~~~e~~~~v~~l~~eav~~---E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an 290 (346)
T 2rcc_A 218 RDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADL---EKDWFRYIIGDKIPGINPEDMETYISFIAN 290 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHH---HHHHHHHHTTTCSTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCChhccHHHHHHHHHHHHHHHHH---HHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence 3555666677777777666444443444666667777766653 111122222 26889999999999988876
No 21
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=20.52 E-value=1.9e+02 Score=25.57 Aligned_cols=70 Identities=7% Similarity=-0.054 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccchHhhHHHHHHHHHHHHHHhcCCCccHHHHH-HhCC-CCCHHhHHHHHHHHhc
Q 026073 105 NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVL-LSLP-CITPQDLLAFEDALTK 179 (244)
Q Consensus 105 ~~~~l~efi~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~vL-~sLP-~I~~~~l~~f~~~L~~ 179 (244)
.|..++-.++..+++...+-. ...+.+.+.++..++...+.. ......++ ..+| |++.+++.+|-+..++
T Consensus 209 RDE~~H~~f~~~l~~~l~~e~-p~~~~~~~~~v~el~~eave~----~e~~~~~~~~~~~lGl~~~~~~~Yi~y~An 280 (323)
T 3ee4_A 209 DDERRHMAWGTFTCRRHVAAD-DANWTVFETRMNELIPLALRL----IEEGFALYGDQPPFDLSKDDFLQYSTDKGM 280 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-THHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTCCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHhhHHHHHHHHHHHHHHHHH----HHHHHHHcCCCccCCCCHHHHHHHHHHHHH
Confidence 455677777777777766543 222333555555555555544 01111222 4678 9999999999998876
No 22
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=20.44 E-value=95 Score=18.83 Aligned_cols=28 Identities=7% Similarity=0.111 Sum_probs=23.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 026073 169 DLLAFEDALTKTASPREQKQHMRSLLVS 196 (244)
Q Consensus 169 ~l~~f~~~L~~~~s~K~QR~l~~~LL~~ 196 (244)
.|.+|-.++-+...+..+|++.|.+.+.
T Consensus 7 ~l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 7 GLMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp SHHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 5888888998888899999999987653
Done!