Query 026074
Match_columns 244
No_of_seqs 143 out of 1116
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05697 Trigger_N: Bacterial 99.9 1.5E-25 3.3E-30 184.1 15.1 112 91-217 1-112 (145)
2 COG0544 Tig FKBP-type peptidyl 99.9 1.5E-23 3.2E-28 201.9 14.9 130 91-235 1-136 (441)
3 PRK01490 tig trigger factor; P 99.9 1.2E-22 2.6E-27 192.5 14.4 113 91-218 1-113 (435)
4 TIGR00115 tig trigger factor. 99.8 4.4E-20 9.6E-25 173.5 12.7 101 103-218 1-101 (408)
5 PHA00440 host protein H-NS-int 71.5 45 0.00097 26.9 8.7 62 112-181 19-82 (98)
6 PF11247 DUF2675: Protein of u 63.9 76 0.0017 25.6 8.7 70 103-181 11-82 (98)
7 cd04920 ACT_AKiii-DAPDC_2 ACT 43.1 45 0.00097 23.5 3.9 58 68-125 3-61 (63)
8 PF06857 ACP: Malonate decarbo 42.9 91 0.002 24.3 5.9 60 90-155 15-78 (87)
9 cd04915 ACT_AK-Ectoine_2 ACT d 35.3 48 0.001 23.6 3.1 59 67-125 4-64 (66)
10 PF05698 Trigger_C: Bacterial 34.9 1.6E+02 0.0034 23.5 6.4 71 105-186 37-113 (162)
11 cd04917 ACT_AKiii-LysC-EC_2 AC 34.1 79 0.0017 21.8 4.0 58 68-125 4-62 (64)
12 COG0199 RpsN Ribosomal protein 33.4 25 0.00055 25.9 1.4 18 119-137 41-58 (61)
13 cd04937 ACT_AKi-DapG-BS_2 ACT 31.1 49 0.0011 23.1 2.5 58 68-125 4-62 (64)
14 KOG3018 Malonyl-CoA decarboxyl 30.5 28 0.0006 33.2 1.4 21 117-137 183-212 (362)
15 PF10458 Val_tRNA-synt_C: Valy 29.8 38 0.00082 24.5 1.8 33 117-157 15-47 (66)
16 PRK13253 citrate lyase subunit 28.8 2.2E+02 0.0047 22.5 6.0 60 90-155 16-79 (92)
17 COG2036 HHT1 Histones H3 and H 24.0 1.8E+02 0.0038 23.0 4.7 33 145-178 22-54 (91)
18 PRK02103 malonate decarboxylas 22.6 2.3E+02 0.0051 23.1 5.2 46 90-136 30-76 (105)
19 PF11000 DUF2840: Protein of u 22.6 94 0.002 26.8 3.1 43 132-190 75-117 (149)
20 PF10691 DUF2497: Protein of u 21.3 3E+02 0.0065 20.8 5.3 60 112-180 7-66 (73)
21 cd04890 ACT_AK-like_1 ACT doma 20.8 89 0.0019 21.2 2.2 41 85-125 21-61 (62)
22 PRK01220 malonate decarboxylas 20.8 2.6E+02 0.0056 22.6 5.1 46 90-136 27-72 (99)
23 cd04911 ACT_AKiii-YclM-BS_1 AC 20.6 70 0.0015 24.3 1.8 44 87-130 24-68 (76)
24 TIGR03130 malonate_delta malon 20.6 2.8E+02 0.0061 22.3 5.3 46 90-136 28-74 (98)
No 1
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.93 E-value=1.5e-25 Score=184.12 Aligned_cols=112 Identities=26% Similarity=0.562 Sum_probs=101.5
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|+++++..+++.+.++|+|++++++++++++|++++++++ |||||| | |||+++|+++||.+ |++++++++++
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~ 72 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ 72 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 99999999999996 99999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~ 217 (244)
.+|.+|+++++|+|+| .|.+. ...+++|++|+|+++|++.
T Consensus 73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~ 112 (145)
T PF05697_consen 73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVF 112 (145)
T ss_dssp HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEec
Confidence 9999999999999999 99885 3578899999999999997
No 2
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=201.90 Aligned_cols=130 Identities=29% Similarity=0.493 Sum_probs=118.7
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|++++++++++++.++|+||++.+++.++++|++++++++ |||||| | |||+.||+++|| +.|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~ 72 (441)
T COG0544 1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP 72 (441)
T ss_pred CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 999999 9 999999999999 5799999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD 235 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~------~~E~~e~~~~~~~~~~~~ 235 (244)
++|.+|+++++|+|++ +|.+. ...+++|++|.|+|.|+|+ ++.+.+++..+.+.++.|
T Consensus 73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~d 136 (441)
T COG0544 73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDED 136 (441)
T ss_pred HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHHH
Confidence 9999999999999999 99765 3578999999999999998 446667777777776433
No 3
>PRK01490 tig trigger factor; Provisional
Probab=99.89 E-value=1.2e-22 Score=192.47 Aligned_cols=113 Identities=25% Similarity=0.460 Sum_probs=107.7
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|+++++..+++++.|+|+||+++++..+++++++++++++ |||||| | |||++||+++||++ |++++++++|+
T Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~ 72 (435)
T PRK01490 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP 72 (435)
T ss_pred CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 99999999999985 99999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 218 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~ 218 (244)
.+|.+|+++++|+|++ +|.+.. ..++++++|+|+++|+|.+
T Consensus 73 ~~~~~~i~~~~~~~~~-~p~i~~------~~~~~~~~~~~~~~~~v~P 113 (435)
T PRK01490 73 EAYEEAIKEEGIRPAG-QPEIEP------TEEEKGKDLEFTAEVEVYP 113 (435)
T ss_pred HHHHHHHHHcCCCcCC-CCcccc------cccCCCCcEEEEEEeeecC
Confidence 9999999999999999 999872 4577889999999999983
No 4
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.83 E-value=4.4e-20 Score=173.52 Aligned_cols=101 Identities=26% Similarity=0.482 Sum_probs=94.8
Q ss_pred EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026074 103 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGL 182 (244)
Q Consensus 103 i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvkee~L 182 (244)
+.|+|+||+++++..++++|++++++++ |||||| | |||+++|+++||+ .|+.++++++|+++|.+|+++++|
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~ 72 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKI 72 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999999 999999 9 9999999999998 499999999999999999999999
Q ss_pred ccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074 183 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 218 (244)
Q Consensus 183 ~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~ 218 (244)
+|+| +|.+.. ..+.+|++|+|+++|+|.+
T Consensus 73 ~~~~-~p~~~~------~~~~~~~~~~~~~~~~v~P 101 (408)
T TIGR00115 73 RPIG-QPEIEV------KEIEDGKDLEFTAEFEVYP 101 (408)
T ss_pred CcCC-CCcccc------ccccCCCCEEEEEEEEecC
Confidence 9999 999862 4678899999999999984
No 5
>PHA00440 host protein H-NS-interacting protein
Probab=71.55 E-value=45 Score=26.91 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026074 112 DATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKEG 181 (244)
Q Consensus 112 eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~y--G~e~I~~eaieeLI~~t~~eAvkee~ 181 (244)
.+.++.+.+.|..|++++. - |-+...--+.+|.+-+ |.+.+...+++.=|.+.+.+.+.+..
T Consensus 19 se~e~~~~e~l~~Lak~v~------~--GE~~~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E~~ 82 (98)
T PHA00440 19 SETEAILEEDILDLAKQAG------A--GEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEEST 82 (98)
T ss_pred hHHHHHHHHHHHHHHhhcC------C--cccCChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 5678899999999999996 3 5434334567888865 88877777777777777666666543
No 6
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=63.94 E-value=76 Score=25.60 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=46.7
Q ss_pred EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHc
Q 026074 103 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKE 180 (244)
Q Consensus 103 i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~y--G~e~I~~eaieeLI~~t~~eAvkee 180 (244)
..++..++.+.. +.+.+.+-.+++++- . |-+.+.--+.+|.+-+ |++.+...++..=+.+.+.+.+.+.
T Consensus 11 F~vtav~~se~e-~~~~e~ll~Lak~v~------~--GE~~~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~ 81 (98)
T PF11247_consen 11 FDVTAVIDSEQE-EEFEEDLLELAKKVG------A--GEKVSGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEY 81 (98)
T ss_pred EEEEEEeCHHHH-HHHHHHHHHHHhhcC------C--ccccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555665554 667777888999885 1 3222224456777764 8888888888877777777777766
Q ss_pred C
Q 026074 181 G 181 (244)
Q Consensus 181 ~ 181 (244)
+
T Consensus 82 s 82 (98)
T PF11247_consen 82 S 82 (98)
T ss_pred c
Confidence 5
No 7
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.06 E-value=45 Score=23.49 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=40.7
Q ss_pred eeeecCCCccccC-CccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 026074 68 VSAVDSGVEVSIT-EPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 125 (244)
Q Consensus 68 ~~a~~sg~~~~~~-~~~~~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~kl 125 (244)
||.||.|.....- -.+-+..|.+.++.+-....+...+++-|+.++.++++...-.++
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 6788888754311 112222355667888888999999999999999988877655443
No 8
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=42.90 E-value=91 Score=24.33 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=39.7
Q ss_pred CcEEEEEecCCceEEEEEEeC-HHHHHHHHHHHHHHHhhcCCCCCCCcC---CCCCCCCCCcHHHHHHHh
Q 026074 90 DAKIVVESQDEDKIQVRVDLT-GDATQRVFDKVLTNLARSAPPIPGFRR---EKGGKTTKVPRDFLIQIL 155 (244)
Q Consensus 90 ~MkVtve~le~~~i~L~VeVp-~eevq~~~dkal~klaK~akpIPGFRK---~kGgk~~KVP~~VIek~y 155 (244)
|+.|++++.+...+.+.++-+ ...+...+++++.+.-+... |++=+= -|| +=.-+|..|+
T Consensus 15 D~~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~-i~~~~v~i~D~G-----Ald~vi~aRl 78 (87)
T PF06857_consen 15 DLEVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELG-IEDAKVEINDKG-----ALDCVIRARL 78 (87)
T ss_pred cEEEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcC-CCceEEEEEeCC-----CCHHHHHHHH
Confidence 567999999888888888888 66666666666666666666 555321 126 3345665555
No 9
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=35.31 E-value=48 Score=23.60 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=39.6
Q ss_pred eeeeecCCCccccCCccccccccC--cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 026074 67 TVSAVDSGVEVSITEPEDLITVKD--AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 125 (244)
Q Consensus 67 p~~a~~sg~~~~~~~~~~~s~~~~--MkVtve~le~~~i~L~VeVp~eevq~~~dkal~kl 125 (244)
=||.||.|....-.-.+-++.+.+ .++..-....++..+.+-|+.++.++++....+.+
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 378888888422112233333443 34444777788999999999999999888776654
No 10
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=34.89 E-value=1.6e+02 Score=23.54 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=39.2
Q ss_pred EEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCC-----CCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHH
Q 026074 105 VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK-----GGKTTKVPRDFLIQILGEERVTKFVVQEIVRST-LTDYTK 178 (244)
Q Consensus 105 L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~k-----Ggk~~KVP~~VIek~yG~e~I~~eaieeLI~~t-~~eAvk 178 (244)
..|++|...++..++..+..+...+. -.|-.... | .-+ ..|-. .+..++.+.+-... +.++.+
T Consensus 37 ~~~~lP~~lv~~~~~~~~~~~~~~~~-~~g~~~e~~~~~~~----~~~-----~~~~~-~~~~~a~~~lk~~lil~~Ia~ 105 (162)
T PF05698_consen 37 SEVELPESLVEEEIERLIEQMEQQLK-QQGMSLEQYLQMSG----KTE-----EEFRE-EFREEAEKRLKQQLILDAIAK 105 (162)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHHHTT----TSSCCCHHHHHC----TCC-----CSHCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHhcC----CCH-----HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999996 44443310 2 111 11222 35555555554443 445567
Q ss_pred HcCCccCC
Q 026074 179 KEGLNVKD 186 (244)
Q Consensus 179 ee~L~pig 186 (244)
.++|.|-.
T Consensus 106 ~e~I~v~~ 113 (162)
T PF05698_consen 106 KEKIEVSD 113 (162)
T ss_dssp HTT----H
T ss_pred HcCCCCCH
Confidence 78887644
No 11
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.11 E-value=79 Score=21.82 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=39.3
Q ss_pred eeeecCCCccc-cCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 026074 68 VSAVDSGVEVS-ITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 125 (244)
Q Consensus 68 ~~a~~sg~~~~-~~~~~~~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~kl 125 (244)
||.||.|.... -.-.+-++.+.+.++..-....+...+.+-|+.++.++++....+.+
T Consensus 4 IsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 4 VALIGNDISETAGVEKRIFDALEDINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHhCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHH
Confidence 56777776432 11123333445566777778889999999999999888877765554
No 12
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=25 Score=25.94 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCCCCcC
Q 026074 119 DKVLTNLARSAPPIPGFRR 137 (244)
Q Consensus 119 dkal~klaK~akpIPGFRK 137 (244)
-..++++|-+=+ ||||+|
T Consensus 41 R~cfRE~A~~g~-ipGv~K 58 (61)
T COG0199 41 RICFRELAHKGE-IPGVKK 58 (61)
T ss_pred HHHHHHHhhccC-CCCeEe
Confidence 457899999999 999998
No 13
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=31.06 E-value=49 Score=23.09 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=37.3
Q ss_pred eeeecCCCcccc-CCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 026074 68 VSAVDSGVEVSI-TEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 125 (244)
Q Consensus 68 ~~a~~sg~~~~~-~~~~~~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~kl 125 (244)
||-+|+|..... .-.+-++.+.+..+.+.....++..+.+-|+.++.++++....+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 677787764331 1223333445545555555558999999999999988877665554
No 14
>KOG3018 consensus Malonyl-CoA decarboxylase [Carbohydrate transport and metabolism]
Probab=30.55 E-value=28 Score=33.21 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhc---------CCCCCCCcC
Q 026074 117 VFDKVLTNLARS---------APPIPGFRR 137 (244)
Q Consensus 117 ~~dkal~klaK~---------akpIPGFRK 137 (244)
.+.++++.+.|. +.||||||+
T Consensus 183 LIKrV~t~lqkd~Phv~tfstLSPIPGF~~ 212 (362)
T KOG3018|consen 183 LIKRVITLLQKDMPHVSTFSTLSPIPGFMQ 212 (362)
T ss_pred HHHHHHHHHHhcCCccccccccCCCccHHH
Confidence 456677777765 458999986
No 15
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.85 E-value=38 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCH
Q 026074 117 VFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGE 157 (244)
Q Consensus 117 ~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~ 157 (244)
.+.+-+..+.+++. -|||.. |||..|+++--.+
T Consensus 15 kl~~~i~~~~~kL~-n~~F~~-------kAP~eVve~er~k 47 (66)
T PF10458_consen 15 KLEKEIERLEKKLS-NENFVE-------KAPEEVVEKEREK 47 (66)
T ss_dssp HHHHHHHHHHHHHC-STTHHH-------HS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-Cccccc-------cCCHHHHHHHHHH
Confidence 34556677777888 899999 8999999886643
No 16
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=28.83 E-value=2.2e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=35.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHH-HHHHHHHHHHHHHhhcCCCCCCCcC---CCCCCCCCCcHHHHHHHh
Q 026074 90 DAKIVVESQDEDKIQVRVDLTGD-ATQRVFDKVLTNLARSAPPIPGFRR---EKGGKTTKVPRDFLIQIL 155 (244)
Q Consensus 90 ~MkVtve~le~~~i~L~VeVp~e-evq~~~dkal~klaK~akpIPGFRK---~kGgk~~KVP~~VIek~y 155 (244)
|+.|.+++.++..+.+.|+-+.+ .+...+++++.+...... +++=+= -|| +=..+|+.|+
T Consensus 16 Dl~V~veP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~~-v~~~~i~i~D~G-----Ald~vI~aRl 79 (92)
T PRK13253 16 DVMIRIAPADTQGIDIQLESSVEKQFGDQIRAVILETLAKLG-VENAQVKVDDKG-----ALDCVIRARL 79 (92)
T ss_pred CEEEEEEeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhcC-CCceEEEEEcCC-----CCHHHHHHHH
Confidence 57899999755567777766666 555555555555555554 444321 126 4446666555
No 17
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=24.00 E-value=1.8e+02 Score=23.04 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 026074 145 KVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTK 178 (244)
Q Consensus 145 KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvk 178 (244)
++|..=|.+..|.++|..+|++.+ ++.+.+++.
T Consensus 22 ~apv~Ri~r~~~~~Rvs~~A~~~l-~~~~e~~~~ 54 (91)
T COG2036 22 KAPVRRILRKAGAERVSSSAIEEL-QEALEEYLE 54 (91)
T ss_pred chHHHHHHHHHhHHHhhHHHHHHH-HHHHHHHHH
Confidence 678888888888888877766554 444444443
No 18
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=22.60 E-value=2.3e+02 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=39.1
Q ss_pred CcEEEEEecC-CceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 026074 90 DAKIVVESQD-EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 136 (244)
Q Consensus 90 ~MkVtve~le-~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFR 136 (244)
||+|-++... +.+..+.|.-+.+=+....+.++.++..... .+|=|
T Consensus 30 dLEVL~ep~~~~~~~~v~I~Tsv~Gf~~~WqaVl~~f~~r~~-~~~~~ 76 (105)
T PRK02103 30 NLEVLVERVLPGGECEVEIRTAAVGFGAVWQAVVADFVERRS-PGGLR 76 (105)
T ss_pred ceEEEEeccCCCCeEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 6788889887 7999999999999888999999999888886 77655
No 19
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=22.58 E-value=94 Score=26.84 Aligned_cols=43 Identities=30% Similarity=0.449 Sum_probs=32.1
Q ss_pred CCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCce
Q 026074 132 IPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVT 190 (244)
Q Consensus 132 IPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvkee~L~pig~~P~ 190 (244)
|||-|| || .+|.+.-|-.+|. .+++. -+|++..||.|..-.|.
T Consensus 75 vP~V~P--G~-------eiLLr~~Gw~kV~-~VL~~------IDaiEalGidp~dvaPd 117 (149)
T PF11000_consen 75 VPFVRP--GG-------EILLRIEGWPKVE-RVLQA------IDAIEALGIDPADVAPD 117 (149)
T ss_pred CCCcCc--ch-------hhhccccCcHHHH-HHHHH------HhHHHHcCCChhhcChH
Confidence 999999 95 8999999986554 33332 28899999999774443
No 20
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=21.30 E-value=3e+02 Score=20.82 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHc
Q 026074 112 DATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKE 180 (244)
Q Consensus 112 eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvkee 180 (244)
.....+...++.+++..+. ...... | .-=-++++.++-+ ..++++++=++..+++++++|
T Consensus 7 ~~~~~~~~~~f~~L~~~~~-~~~~~~--~----~TlE~lvremLRP--mLkeWLD~nLP~lVErlVr~E 66 (73)
T PF10691_consen 7 PETAEAVASAFAKLASAIR-QISPSS--G----RTLEDLVREMLRP--MLKEWLDENLPGLVERLVREE 66 (73)
T ss_pred hhHHHHHHHHHHHHHHHHH-hccccc--c----ccHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHH
Confidence 3455666677777777665 222222 3 3346777777755 677888888888887777764
No 21
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=20.83 E-value=89 Score=21.20 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=28.5
Q ss_pred cccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 026074 85 LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 125 (244)
Q Consensus 85 ~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~kl 125 (244)
|+.+++..+.+.-...+...+.+.++....++.+++.+++|
T Consensus 21 f~~l~~~~i~v~~i~t~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 21 FEILEKHGISVDLIPTSENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred HHHHHHcCCeEEEEecCCCEEEEEEehhhhhHHHHHHHHhh
Confidence 33455545555555556688999999988888877777665
No 22
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=20.80 E-value=2.6e+02 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=38.1
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 026074 90 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 136 (244)
Q Consensus 90 ~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFR 136 (244)
||+|-++...+.+..+.|.-+.+=+....+.++.++..... .+|=|
T Consensus 27 dLEVL~ep~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~~-~~~~~ 72 (99)
T PRK01220 27 DLEVLLEPGDAGKLSIQVVTSVNGSAARWKALFERFFTAQT-PPAAN 72 (99)
T ss_pred ceEEEEEcCCCCcEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 67888888888999999999988888888888888888876 66544
No 23
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.64 E-value=70 Score=24.34 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=38.1
Q ss_pred cccCcEEEEEecCCceEEEEEEeCHHHHHH-HHHHHHHHHhhcCC
Q 026074 87 TVKDAKIVVESQDEDKIQVRVDLTGDATQR-VFDKVLTNLARSAP 130 (244)
Q Consensus 87 ~~~~MkVtve~le~~~i~L~VeVp~eevq~-~~dkal~klaK~ak 130 (244)
.+++-.+.++..+...-.++|.+..++++. ..++.+.++.+.++
T Consensus 24 I~E~~~is~Eh~PSGID~~Siii~~~~~~~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 24 ILEDNGISYEHMPSGIDDISIIIRDNQLTDEKEQKILAEIKEELH 68 (76)
T ss_pred HHHHcCCCEeeecCCCccEEEEEEccccchhhHHHHHHHHHHhcC
Confidence 455566778889999999999999999999 99999999999877
No 24
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=20.61 E-value=2.8e+02 Score=22.34 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=37.9
Q ss_pred CcEEEEEecC-CceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 026074 90 DAKIVVESQD-EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 136 (244)
Q Consensus 90 ~MkVtve~le-~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFR 136 (244)
||+|-++... +.+..+.|.-+.+=+....+.++.++..... .+|=|
T Consensus 28 dLEVL~ep~~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~~-~~~~~ 74 (98)
T TIGR03130 28 DLEVLVEPGAEGGKTEVRITTSVDGFGAVWQAVIERFFARYP-LAGLQ 74 (98)
T ss_pred ceEEEEEcCCCCCeEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 6788888854 8899999999988888888888888888876 77644
Done!