Query 026074
Match_columns 244
No_of_seqs 143 out of 1116
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p9y_A Trigger factor, TF; alp 100.0 2.6E-29 9E-34 201.8 15.3 114 90-218 3-116 (121)
2 2d3o_1 Trigger factor, TF; rib 100.0 9.2E-30 3.2E-34 201.8 6.8 112 91-218 1-112 (112)
3 2nsc_A Trigger factor, TF; cha 99.9 2.4E-28 8.1E-33 192.9 8.1 109 91-218 1-109 (109)
4 1t11_A Trigger factor, TF; hel 99.9 2.2E-25 7.5E-30 209.0 17.2 132 89-235 2-139 (392)
5 1w26_A Trigger factor, TF; cha 99.9 5.2E-25 1.8E-29 208.5 12.0 129 91-234 1-135 (432)
6 3gty_X Trigger factor, TF; cha 99.8 1E-20 3.5E-25 179.4 7.1 108 91-217 1-108 (433)
7 4a20_A Ubiquitin-like protein 40.6 30 0.001 25.9 4.0 41 82-122 11-51 (98)
8 4dbg_A Ranbp-type and C3HC4-ty 26.3 62 0.0021 24.8 3.7 33 90-122 24-56 (105)
9 1wx7_A Ubiquilin 3; ubiquitin- 23.0 1.2E+02 0.004 22.2 4.6 45 70-123 3-47 (106)
10 2kl8_A OR15; structural genomi 22.5 1.2E+02 0.0041 22.1 4.4 37 95-132 34-70 (85)
11 2p06_A Hypothetical protein AF 20.9 2E+02 0.007 21.9 5.6 54 118-186 32-85 (114)
12 3kg0_A Snoab; polyketide, anth 20.2 51 0.0017 25.5 2.2 35 101-137 24-58 (128)
No 1
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.96 E-value=2.6e-29 Score=201.83 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=108.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 026074 90 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 169 (244)
Q Consensus 90 ~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI 169 (244)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||+ .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i 74 (121)
T 1p9y_A 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM 74 (121)
T ss_dssp -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999997 59999999999
Q ss_pred HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074 170 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 218 (244)
Q Consensus 170 ~~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~ 218 (244)
+++|.+|+++++|+|++ +|.++. ..+++|++|.|+++|+|++
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P 116 (121)
T 1p9y_A 75 SRNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP 116 (121)
T ss_dssp HHHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred HHHHHHHHHHcCCCCCC-CCcccc------cccCCCCCEEEEEEEEEcC
Confidence 99999999999999999 999862 4578899999999999983
No 2
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.96 E-value=9.2e-30 Score=201.83 Aligned_cols=112 Identities=25% Similarity=0.458 Sum_probs=95.8
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|++++++ ++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||++.|++++++++|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~ 72 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE 72 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8899999 99999999999999999999999999999999 999999 9 99999999999955799999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 218 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~ 218 (244)
++|.+|+++++|+|++ +|.++. . +++|++|.|+++|+|++
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~-~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 73 THYSQGLRELGLNLVD-ATVDPQ------D-VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHHHHHHHHSCCCCCC-EECCCC------C-CCSSSCCCEEEEEC---
T ss_pred HHHHHHHHHcCCCCCC-CCcccc------c-ccCCCCEEEEEEEEecC
Confidence 9999999999999999 999862 4 78899999999999874
No 3
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.95 E-value=2.4e-28 Score=192.90 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=103.2
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~ 72 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 218 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~ 218 (244)
+ |.+|+++++| ++ +|.++. ..++ |++|.|+++|+|++
T Consensus 73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P 109 (109)
T 2nsc_A 73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP 109 (109)
T ss_dssp T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence 9 9999999999 99 999862 4577 99999999999864
No 4
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.93 E-value=2.2e-25 Score=208.98 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=116.9
Q ss_pred cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHH
Q 026074 89 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEI 168 (244)
Q Consensus 89 ~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeL 168 (244)
..|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||. .|++++++++
T Consensus 2 ~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~ 73 (392)
T 1t11_A 2 SHMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEV 73 (392)
T ss_dssp -CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHH
T ss_pred CcceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHH
Confidence 359999999999999999999999999999999999999999 999999 9 9999999999996 6999999999
Q ss_pred HHHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCCc
Q 026074 169 VRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSSD 235 (244)
Q Consensus 169 I~~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~------~E~~e~~~~~~~~~~~~ 235 (244)
|+.+|.+|+++++|+|+| +|.++. ..+++|++|.|+++|+|++ +.+.+.+....+.++.|
T Consensus 74 ~~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~ 139 (392)
T 1t11_A 74 MQRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD 139 (392)
T ss_dssp HHHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred HHHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence 999999999999999999 999862 3578899999999999973 45666666666666654
No 5
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.92 E-value=5.2e-25 Score=208.54 Aligned_cols=129 Identities=24% Similarity=0.367 Sum_probs=116.4
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||. .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~ 72 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS 72 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCC
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSS 234 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~------~E~~e~~~~~~~~~~~ 234 (244)
++|.+|+++++|+|+| +|.++. ..+++|++|.|+++|+|++ +.+.+.+....+.++.
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde 135 (432)
T 1w26_A 73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA 135 (432)
T ss_dssp HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence 9999999999999999 999862 3578899999999999973 3555565555555544
No 6
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=99.81 E-value=1e-20 Score=179.36 Aligned_cols=108 Identities=18% Similarity=0.315 Sum_probs=95.6
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074 91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 170 (244)
Q Consensus 91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~ 170 (244)
|++++++.+++.+.|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ .++.++++.+++
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~ 72 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999998 599999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee
Q 026074 171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217 (244)
Q Consensus 171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~ 217 (244)
.++ +++.++ +|++ +|.++. ..+ .|++|.|+++|+|+
T Consensus 73 ~~~-~~~~~e--~~~~-~P~i~~------~~~-~~~~~~f~~~vev~ 108 (433)
T 3gty_X 73 LIP-DTLKDR--KLIL-SPIVTE------REL-KDVTARVVVEVHEE 108 (433)
T ss_dssp TST-TTSSSS--CBSS-CCEEEE------EEE-CSSCEEEEEEEEBC
T ss_pred HHH-HHHHhc--CCCC-CCCcCc------ccc-cCCCEEEEEEEEec
Confidence 987 555555 6899 999863 234 36689999999997
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=40.59 E-value=30 Score=25.91 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=27.9
Q ss_pred ccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 026074 82 PEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 122 (244)
Q Consensus 82 ~~~~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal 122 (244)
.+|.+....|+|+++.+.+....+.|+|+..++=..+.+.+
T Consensus 11 ~~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 51 (98)
T 4a20_A 11 DDDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 51 (98)
T ss_dssp -------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHH
T ss_pred CcccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHH
Confidence 35556667799999999999889998988877666665555
No 8
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=26.28 E-value=62 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=25.6
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 026074 90 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 122 (244)
Q Consensus 90 ~MkVtve~le~~~i~L~VeVp~eevq~~~dkal 122 (244)
+|+|++++.......++++|.+..+=..+.+.+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I 56 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV 56 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHH
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHH
Confidence 399999999998899999998866555444443
No 9
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.04 E-value=1.2e+02 Score=22.17 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=26.5
Q ss_pred eecCCCccccCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHH
Q 026074 70 AVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLT 123 (244)
Q Consensus 70 a~~sg~~~~~~~~~~~s~~~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~ 123 (244)
.-.||.+++.++. ..|+|.|+...+ + +.++|+...+=..+.+.+.
T Consensus 3 ~~~~~~~~~~~~~------~~m~I~Vk~~~g-~--~~l~v~~~~TV~~LK~~I~ 47 (106)
T 1wx7_A 3 SGSSGSPAPVQDP------HLIKVTVKTPKD-K--EDFSVTDTCTIQQLKEEIS 47 (106)
T ss_dssp CCCCCCCSCCCCS------SEEEEEEECSSC-E--EEEEEETTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCC------ceEEEEEEeCCC-c--EEEEECCCCcHHHHHHHHH
Confidence 3457777776542 238899988776 3 4666666544344444333
No 10
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=22.53 E-value=1.2e+02 Score=22.14 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.2
Q ss_pred EEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCC
Q 026074 95 VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI 132 (244)
Q Consensus 95 ve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpI 132 (244)
.-.++++..+++|+=-++++.+.+.+....++|..+ |
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerlakefn-i 70 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN-I 70 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC-C
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC-e
Confidence 356889999999999999999999999999999887 5
No 11
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=20.87 E-value=2e+02 Score=21.87 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Q 026074 118 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKD 186 (244)
Q Consensus 118 ~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvkee~L~pig 186 (244)
+.+.-.++.|.+. || | ..|+.-+ -|..+++.....+++ +-+.+|+++++..-+-
T Consensus 32 lremhakymkrvs-----rp--g----ntprpwf--dfseerllsrlfeem--delreavekedwenlr 85 (114)
T 2p06_A 32 LREMHAKYMKRVS-----RP--G----NTPRPWF--DFSEERLLSRLFEEM--DELREAVEKEDWENLR 85 (114)
T ss_dssp HHHHHHHHHHHHT-----ST--T----CCSCHHH--HSCHHHHHHHHHHHH--HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcc-----CC--C----CCCCCcc--cccHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344456777787 88 8 7888877 477777777766665 3477889888766544
No 12
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=20.17 E-value=51 Score=25.47 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcC
Q 026074 101 DKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 137 (244)
Q Consensus 101 ~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK 137 (244)
..+..+++|.++ +..|.+++.++...+.-.|||+-
T Consensus 24 i~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~ 58 (128)
T 3kg0_A 24 VTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVR 58 (128)
T ss_dssp EEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEE
T ss_pred EEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccE
Confidence 445677888887 88999999998887644999964
Done!