BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026075
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 110/148 (74%), Gaps = 2/148 (1%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAFEFI GGI TE +YPY+A DG+CD ++NA V+ID +E+VP NDE AL KAVA
Sbjct: 70 MDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVA 129
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSW 119
NQPVSVAI+ GG FQ Y G+FTG CGT LDHGV VGYGT +G YW VKNSWG W
Sbjct: 130 NQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEW 189
Query: 120 GEAGYIRMERNVAGTLTGKCGIAMEASY 147
GE GYIRMER ++ G CGIAMEASY
Sbjct: 190 GEKGYIRMERGISDK-EGLCGIAMEASY 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 2/147 (1%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M F+FII+NGGI+TE +YPY A +G C+ + K V+ID YE+VP N+E ALQ AVA
Sbjct: 70 MTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA 129
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWG 120
QPVSVA+E G FQ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSWG++WG
Sbjct: 130 YQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWG 189
Query: 121 EAGYIRMERNVAGTLTGKCGIAMEASY 147
E GY+R++RNV G G+CGIA +ASY
Sbjct: 190 EEGYMRIQRNVGG--VGQCGIAKKASY 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 2/147 (1%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M F+FII+NGGI+TE +YPY A +G C+ + K V+ID YE+VP N+E ALQ AVA
Sbjct: 70 MTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA 129
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWG 120
QPVSVA+E G FQ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSWG++WG
Sbjct: 130 YQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWG 189
Query: 121 EAGYIRMERNVAGTLTGKCGIAMEASY 147
E GY+R++RNV G G+CGIA +ASY
Sbjct: 190 EEGYMRIQRNVGG--VGQCGIAKKASY 214
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 112/147 (76%), Gaps = 2/147 (1%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M+ AF+FI++NGGI++EE YPY+ DG C++ NA VV+ID YE+VP ++E++LQKAVA
Sbjct: 70 MNPAFQFIVNNGGINSEETYPYRGQDGICNS-TVNAPVVSIDSYENVPSHNEQSLQKAVA 128
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWG 120
NQPVSV ++ G FQLY SGIFTG C S +H +T VGYGTEN D+WIVKNSWG +WG
Sbjct: 129 NQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWG 188
Query: 121 EAGYIRMERNVAGTLTGKCGIAMEASY 147
E+GYIR ERN+ GKCGI ASY
Sbjct: 189 ESGYIRAERNIENP-DGKCGITRFASY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQP 63
F+FII+NGGI+TEE+YPY A DG C+ +N K VTID YE+VP N+E ALQ AV QP
Sbjct: 73 GFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQP 132
Query: 64 VSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAG 123
VSVA++ G AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE G
Sbjct: 133 VSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEG 192
Query: 124 YIRMERNVAGTLTGKCGIAMEASY 147
Y+R+ RNV G G CGIA SY
Sbjct: 193 YMRILRNVGG--AGTCGIATMPSY 214
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 109/147 (74%), Gaps = 3/147 (2%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M+ AF++II NGGIDT+++YPY A+ GSC YR +VV+I+ ++ V N+E ALQ AVA
Sbjct: 68 MNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNESALQSAVA 125
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWG 120
+QPVSV +E G FQ Y SGIFTG CGT+ +HGV VGYGT++G +YWIV+NSWG +WG
Sbjct: 126 SQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWG 185
Query: 121 EAGYIRMERNVAGTLTGKCGIAMEASY 147
GYI MERNVA + G CGIA SY
Sbjct: 186 NQGYIWMERNVASS-AGLCGIAQLPSY 211
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/144 (61%), Positives = 107/144 (74%), Gaps = 2/144 (1%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQP 63
F+FII++GGI+TEE+YPY A DG CD ++ K VTID YE+VP N+E ALQ AV QP
Sbjct: 73 GFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNNEWALQTAVTYQP 132
Query: 64 VSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAG 123
VSVA++ G AF+ Y SGIFTG CGT++DH + VGYGTE G DYWIVKNSW ++WGE G
Sbjct: 133 VSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEG 192
Query: 124 YIRMERNVAGTLTGKCGIAMEASY 147
Y+R+ RNV G G CGIA SY
Sbjct: 193 YMRILRNVGG--AGTCGIATMPSY 214
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 109/151 (72%), Gaps = 5/151 (3%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR--KNAKVVT-IDDYEDVPLNDEKALQK 57
MD AFE+I +NGG+ TE YPY+A G+C+ R +N+ VV ID ++DVP N E+ L +
Sbjct: 72 MDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLAR 131
Query: 58 AVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT-ENGADYWIVKNSWG 116
AVANQPVSVA+E G AF Y G+FTG CGT LDHGV VGYG E+G YW VKNSWG
Sbjct: 132 AVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWG 191
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWGE GYIR+E++ +G G CGIAMEASY
Sbjct: 192 PSWGEQGYIRVEKD-SGASGGLCGIAMEASY 221
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 99/145 (68%), Gaps = 10/145 (6%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
YA+++IIDNGGIDTE +YPYKA+ G C R KVV ID Y+ VP +E AL+KAVA+Q
Sbjct: 70 YAYQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCNENALKKAVASQ 126
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
P VAI+ FQ Y+SGIF+G CGT L+HGV VGY DYWIV+NSWG WGE
Sbjct: 127 PSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVRNSWGRYWGEQ 182
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIRM+R V G G CGIA Y
Sbjct: 183 GYIRMKR-VGG--CGLCGIARLPYY 204
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 100/145 (68%), Gaps = 10/145 (6%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
+A+++II+NGGIDT+ +YPYKA+ G C + +KVV+ID Y VP +E AL++AVA Q
Sbjct: 70 FAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEXALKQAVAVQ 126
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
P +VAI+ FQ Y SGIF+G CGT L+HGVT VGY A+YWIV+NSWG WGE
Sbjct: 127 PSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVRNSWGRYWGEK 182
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIRM R V G G CGIA Y
Sbjct: 183 GYIRMLR-VGG--CGLCGIARLPYY 204
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 94/147 (63%), Gaps = 10/147 (6%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
D A+++II NGGIDTE +YPYKA G C R KVV ID + VP +E AL+ AVA
Sbjct: 68 FDRAYQYIIANGGIDTEANYPYKAFQGPC---RAAKKVVRIDGCKGVPQCNENALKNAVA 124
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWG 120
+QP VAI+ FQ Y+ GIFTG CGT L+HGV VGYG DYWIV+NSWG WG
Sbjct: 125 SQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVRNSWGRHWG 180
Query: 121 EAGYIRMERNVAGTLTGKCGIAMEASY 147
E GY RM+R V G G CGIA Y
Sbjct: 181 EQGYTRMKR-VGG--CGLCGIARLPFY 204
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Query: 9 IDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 68
+ N G+ T + YPY+A C K V I Y+ VP N E + A+ANQP+SV +
Sbjct: 75 VANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQPLSVLV 134
Query: 69 EGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRME 128
E GG FQLY+SG+F G CGT LDH VTAVGYGT +G +Y I+KNSWG +WGE GY+R++
Sbjct: 135 EAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLK 194
Query: 129 RNVAGTLTGKCGIAMEASY 147
R +G G CG+ + Y
Sbjct: 195 RQ-SGNSQGTCGVYKSSYY 212
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M+ AF++++D+GGI +E+ YPY A D C + KVV I ++DVP E A++ A+A
Sbjct: 76 MNDAFQYVLDSGGICSEDAYPYLARDEECRA-QSCEKVVKILGFKDVPRRSEAAMKAALA 134
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSS 118
PVS+AIE M FQ Y G+F CGT LDHGV VGYGT E+ D+WI+KNSWG+
Sbjct: 135 KSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTG 194
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
WG GY+ M + G+CG+ ++AS+
Sbjct: 195 WGRDGYMYMAMHKGE--EGQCGLLLDASF 221
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 88/138 (63%), Gaps = 6/138 (4%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQP 63
+ ++++DNG + TE +YPY+ G C K V I Y+ VP NDE +L +A+ANQP
Sbjct: 71 SLQYVVDNG-VHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQP 129
Query: 64 VSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAG 123
VSV + G FQ Y+ GI+ G CGT+ DH VTAVGY G Y ++KNSWG +WGE G
Sbjct: 130 VSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKG 185
Query: 124 YIRMERNVAGTLTGKCGI 141
YIR++R +G G CG+
Sbjct: 186 YIRIKR-ASGRSKGTCGV 202
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEEGYIRMARNKG----NHCGIASFPSY 214
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 169 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 227
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 228 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 287
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 288 FGEEGYIRMARNKG----NHCGIASFPSY 312
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 74 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 132
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 133 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 192
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 193 FGEEGYIRMARNKG----NHCGIASFPSY 217
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 73 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 131
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 132 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 191
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 192 FGEEGYIRMARNKG----NHCGIASFPSY 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEEGYIRMARNKG----NHCGIASFPSY 214
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEEGYIRMARNKG----NHCGIASFPSY 214
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEEGYIRMARNKG----NHCGIASFPSY 214
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCRKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEKGYIRMARNKG----NHCGIASFPSY 214
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 130
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 131 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 191 FGEEGYIRMARNKG----NHCGIASFPSY 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 130
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 131 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 191 FGEEGYIRMARNKG----NHCGIASFPSY 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 130
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 131 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 191 FGEEGYIRMARNKG----NHCGIASFPSY 215
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDLKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEEGYIRMARNKG----NHCGIASFPSY 214
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF++IIDN GID++ YPYKA+D C Y + T Y ++P E L++AVA
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSAYRAATCRKYTELPYGREDVLKEAVA 129
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
N+ PVSV ++ +F LY SG++ C +++HGV VGYG NG +YW+VKNSWG +
Sbjct: 130 NKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+GE GYIRM RN CGIA SY
Sbjct: 190 FGEKGYIRMARNKG----NHCGIASFPSY 214
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
YA +++ N GI + YPY+ + C + V D VP N+E+AL + +A Q
Sbjct: 70 YALQYVA-NSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQ 128
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
PVS+ +E G AFQ Y GIF G CGTS+DH V AVGYG DY ++KNSWG+ WGE
Sbjct: 129 PVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN----DYILIKNSWGTGWGEG 184
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIR++R +G G CG+ ++ +
Sbjct: 185 GYIRIKRG-SGNPQGACGVLSDSVF 208
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 93/154 (60%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 162 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVA 219
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E +G YW+VKN
Sbjct: 220 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKN 279
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 280 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 309
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 166 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVA 223
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 224 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 283
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 284 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 313
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 187
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 188 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 217
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 71 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 128
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 129 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 188
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 189 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 218
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 187
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 188 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 217
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 108 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVA 165
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 166 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 225
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 226 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 255
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 187
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 188 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 217
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 71 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 128
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 129 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 188
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 189 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 187
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 188 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 217
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
YA E++ NG I YPYKA G+C + +V V N+E L A+A Q
Sbjct: 70 YALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ 128
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
PVSV +E G FQLY+ GIF G CGT +DH VTAVGYG G Y ++KNSWG++WGE
Sbjct: 129 PVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEK 188
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIR++R G G CG+ + Y
Sbjct: 189 GYIRIKR-APGNSPGVCGLYKSSYY 212
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKN 113
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E + YW+VKN
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKN 187
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY++M ++ CGIA ASY
Sbjct: 188 SWGEEWGMGGYVKMAKD----RRNHCGIASAASY 217
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY D SC Y K Y ++P +EKAL++AVA
Sbjct: 68 MTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 126
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGR--CGTSLDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ +L+H V AVGYG + G +WI+KNSWG
Sbjct: 127 RVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 186
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG GYI M RN CGIA AS+
Sbjct: 187 SWGNKGYILMARN----KNNACGIANLASF 212
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
YA E++ NG I YPYKA G+C + +V V N+E L A+A Q
Sbjct: 70 YALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ 128
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
PVSV +E G FQLY+ GIF G CGT ++H VTAVGYG G Y ++KNSWG++WGE
Sbjct: 129 PVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIKNSWGTAWGEK 188
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIR++R G G CG+ + Y
Sbjct: 189 GYIRIKR-APGNSPGVCGLYKSSYY 212
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 12/154 (7%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ +NGG+D+EE YPY A+D C YR V + V EKAL KAVA
Sbjct: 70 MARAFQYVKENGGLDSEESYPYVAVDEIC-KYRPENSVAQDTGFTVVAPGKEKALMKAVA 128
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKN 113
P+SVA++ G +FQ Y+SGI F C + +LDHGV VGYG E + + YW+VKN
Sbjct: 129 TVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKN 188
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY+++ ++ CGIA ASY
Sbjct: 189 SWGPEWGSNGYVKIAKD----KNNHCGIATAASY 218
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 12/154 (7%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ +NGG+D+EE YPY A+D C YR V + V EKAL KAVA
Sbjct: 70 MARAFQYVKENGGLDSEESYPYVAVDEIC-KYRPENSVAQDTGFTVVAPGKEKALMKAVA 128
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKN 113
P+SVA++ G +FQ Y+SGI F C + +LDHGV VGYG E + + YW+VKN
Sbjct: 129 TVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKN 188
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GY+++ ++ CGIA ASY
Sbjct: 189 SWGPEWGSNGYVKIAKD----KNNHCGIATAASY 218
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY D SC Y K Y ++P +E AL++AVA
Sbjct: 68 MTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEAALKRAVA 126
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGR--CGTSLDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y +G++ +L+H V AVGYG + G +WI+KNSWG
Sbjct: 127 AVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGE 186
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG AGYI M RN CGIA AS+
Sbjct: 187 SWGNAGYILMARN----KNNACGIANLASF 212
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 91/151 (60%), Gaps = 10/151 (6%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDVGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGIF--TGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWG 116
P+SVAI+ G +F Y+ GI+ + +SL+H + VGYG N YW+VKNSWG
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLVKNSWG 187
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
WG GY++M ++ CGIA ASY
Sbjct: 188 EEWGMGGYVKMAKD----RRNHCGIASAASY 214
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 167 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 225
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ +L+H V AVGYG + G +WI+KNSWG
Sbjct: 226 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 285
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI M RN CGIA AS+
Sbjct: 286 NWGNKGYILMARNK----NNACGIANLASF 311
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 126
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ S L+H V AVGYG + G +WI+KNSWG
Sbjct: 127 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 186
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI M RN CGIA AS+
Sbjct: 187 NWGNKGYILMARN----KNNACGIANLASF 212
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 67 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 125
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ S L+H V AVGYG + G +WI+KNSWG
Sbjct: 126 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 185
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI M RN CGIA AS+
Sbjct: 186 NWGNKGYILMARN----KNNACGIANLASF 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 66 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 124
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ S L+H V AVGYG + G +WI+KNSWG
Sbjct: 125 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 184
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI M RN CGIA AS+
Sbjct: 185 NWGNKGYILMARN----KNNACGIANLASF 210
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 126
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ S L+H V AVGYG G +WI+KNSWG
Sbjct: 127 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGE 186
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI+M RN CGIA AS+
Sbjct: 187 NWGMGGYIKMARN----KNNACGIANLASF 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M AF+++ N GID+E+ YPY + SC Y K Y ++P +EKAL++AVA
Sbjct: 70 MTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVA 128
Query: 61 N-QPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGS 117
PVSVAI+ +FQ Y G++ S L+H V AVGYG + G +WI+KNSWG
Sbjct: 129 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 188
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
+WG GYI M RN CGIA AS+
Sbjct: 189 NWGNKGYILMARN----KNNACGIANLASF 214
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 3 YAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
YA E++ NG I YPYKA G+C + +V V N+E L A+A Q
Sbjct: 176 YALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ 234
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEA 122
PVSV +E G FQLY+ GIF G CGT +D VTAVGYG G Y ++KNSWG++WGE
Sbjct: 235 PVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294
Query: 123 GYIRMERNVAGTLTGKCGIAMEASY 147
GYIR++R G G CG+ + Y
Sbjct: 295 GYIRIKR-APGNSPGVCGLYKSSYY 318
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN 61
D AF ++I NGGI ++ +YPY +DG+CD + A ID Y +VP N AL AVA
Sbjct: 69 DDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIA--ARIDGYTNVP-NSSSALLDAVAK 125
Query: 62 QPVSVAIEGGGMAFQLYES-GIFTGRC----GTSLDHGVTAVGYGTE-NGADYWIVKNSW 115
QPVSV I +FQLY GIF G ++DH V VGYG+ ADYWIVKNSW
Sbjct: 126 QPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSW 185
Query: 116 GSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
G+ WG GYI + RN G C I SY
Sbjct: 186 GTEWGIDGYILIRRNT-NRPDGVCAIDAWGSY 216
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKA-------LQ 56
+FE+++ +GGI +E DYPYKA DG C KV TID+Y L++E LQ
Sbjct: 72 SFEWVVKHGGIASEADYPYKARDGKCKANEIQDKV-TIDNYGVQILSNESTESEAESSLQ 130
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGT--SLDHGVTAVGYGTENGADYWIVKN 113
V QP+SV+I+ F Y GI+ G C + ++H V VGYG+E+G DYWI KN
Sbjct: 131 SFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKN 188
Query: 114 SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
SWG WG GYIR++RN G L G CG+ ASY
Sbjct: 189 SWGEDWGIDGYIRIQRNT-GNLLGVCGMNYFASY 221
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V +E AL ++ANQPVSV +E G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 86/150 (57%), Gaps = 10/150 (6%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MD AF +I D G I +E YPY+A C + + V T+ Y D+P DE +L AV
Sbjct: 184 MDSAFSYIHDYG-IMSESAYPYEAQGDYC-RFDSSQSVTTLSGYYDLPSGDENSLADAVG 241
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGS 117
PV+VAI+ Q Y G+F + + L+HGV VGYG++NG DYWI+KNSWGS
Sbjct: 242 QAGPVAVAIDATD-ELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGS 300
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
WGE+GY R RN CGIA ASY
Sbjct: 301 GWGESGYWRQVRNYGNN----CGIATAASY 326
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V +E AL ++ANQPVSV +E G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V +E AL ++ANQPVSV +E G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V ++ AL ++ANQPVSV ++ G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V ++ AL ++ANQPVSV ++ G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V ++ AL ++ANQPVSV ++ G
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAG 138
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRGT- 193
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 194 GNSYGVCGLYTSSFY 208
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 13 GIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 72
GI YPY+ + C + K D V +E AL ++ANQPVSV +E G
Sbjct: 230 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 289
Query: 73 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 132
FQLY GIF G CG +DH V AVGY G +Y +++NSWG+ WGE GYIR++R
Sbjct: 290 KDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIRNSWGTGWGENGYIRIKRGT- 344
Query: 133 GTLTGKCGIAMEASY 147
G G CG+ + Y
Sbjct: 345 GNSYGVCGLYTSSFY 359
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQP 63
+ +++ NG I YPY A +C + V + V N+E +L A+A+QP
Sbjct: 71 SLQYVAQNG-IHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQP 129
Query: 64 VSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAG 123
VSV +E G FQ Y+ GIF G CGT +DH VTAVGYG G Y ++KNSWG WGE G
Sbjct: 130 VSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENG 189
Query: 124 YIRMERNVAGTLTGKCGIAMEASY 147
YIR+ R +G G CG+ + Y
Sbjct: 190 YIRIRR-ASGNSPGVCGVYRSSYY 212
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV- 59
M+ A++++ G++TE YPY A++G C Y K V + + V E L+ V
Sbjct: 161 MENAYQYL-KQFGLETESSYPYTAVEGQC-RYNKQLGVAKVTGFYTVHSGSEVELKNLVG 218
Query: 60 ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGS 117
A P +VA++ F +Y SGI+ + + L +H V AVGYGT+ G DYWIVKNSWG
Sbjct: 219 AEGPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGL 277
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
SWGE GYIRM RN CGIA AS
Sbjct: 278 SWGERGYIRMVRNRGNM----CGIASLAS 302
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 83/149 (55%), Gaps = 12/149 (8%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQ 62
AFE+I N GI E+ YPYK D C ++ + + + D ++ +NDE+A+ +AVA
Sbjct: 74 AFEYIRYNKGIMGEDTYPYKGQDDHCK-FQPDKAIAFVKDVANITMNDEEAMVEAVALYN 132
Query: 63 PVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSS 118
PVS A E F +Y GI++ + ++H V AVGYG ENG YWIVKNSWG
Sbjct: 133 PVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQ 191
Query: 119 WGEAGYIRMERNVAGTLTGKCGIAMEASY 147
WG GY +ER CG+A ASY
Sbjct: 192 WGMNGYFLIERG-----KNMCGLAACASY 215
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 9/149 (6%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
M+ AF ++ NGGID+E YPY+ DG+C Y N + Y + DE L VA
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYEMADGNCH-YDPNQVAARLSGYVYLSGPDENMLADMVA 243
Query: 61 NQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGS 117
+ PV+VA + F Y G++ C T+ H V VGYG ENG DYW+VKNSWG
Sbjct: 244 TKGPVAVAFDADD-PFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGD 302
Query: 118 SWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
WG GY ++ RN CGIA AS
Sbjct: 303 GWGLDGYFKIARNA----NNHCGIAGVAS 327
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 1 MDYAFEFIID-NGG-IDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQ 56
MD AF +I++ NGG + TE YPY + +G + N + I D+ D+P +++
Sbjct: 68 MDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAA 127
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116
N P+++A++ +F Y GI T LDHGV VGY + YWI+KNSW
Sbjct: 128 YLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYWIIKNSWS 185
Query: 117 SSWGEAGYIRMER 129
+ WGE GYIR+E+
Sbjct: 186 NMWGEDGYIRIEK 198
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 1 MDYAFEFII--DNGGIDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQ 56
M+ AFE+I+ +NG + TE+ YPY + +G + V TI + ++P ++ +
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAA 127
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116
N PV+VA++ ++ Y G+ T +LDHGV VGY YWI+KNSW
Sbjct: 128 WLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWIIKNSWT 185
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
+ WGE GYIR+ + + +C + EAS
Sbjct: 186 TQWGEEGYIRIAKG-----SNQCLVKEEAS 210
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 1 MDYAFEFII--DNGGIDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQ 56
M+ AFE+I+ +NG + TE+ YPY + +G + V TI + ++P ++ +
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAA 127
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116
N PV+VA++ ++ Y G+ T LDHGV VGY YWI+KNSW
Sbjct: 128 WLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWT 185
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
+ WGE GYIR+ + + +C + EAS
Sbjct: 186 TQWGEEGYIRIAKG-----SNQCLVKEEAS 210
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 1 MDYAFEFII--DNGGIDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQ 56
M+ AFE+I+ +NG + TE+ YPY + +G + V TI + ++P ++ +
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAA 127
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116
N PV+VA++ ++ Y G+ T LDHGV VGY YWI+KNSW
Sbjct: 128 WLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWT 185
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
+ WGE GYIR+ + + +C + EAS
Sbjct: 186 TQWGEEGYIRIAKG-----SNQCLVKEEAS 210
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 1 MDYAFEFII--DNGGIDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQ 56
M+ AFE+I+ +NG + TE+ YPY + +G + V TI + ++P ++ +
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAA 127
Query: 57 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116
N PV+VA++ ++ Y G+ T LDHGV VGY YWI+KNSW
Sbjct: 128 WLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWT 185
Query: 117 SSWGEAGYIRMERNVAGTLTGKCGIAMEAS 146
+ WGE GYIR+ + + +C + EAS
Sbjct: 186 TQWGEEGYIRIAKG-----SNQCLVKEEAS 210
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTEN 104
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E+
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
MDYAF+++ DNGG+D+EE YPY+A + SC Y V + D+P EKAL KAVA
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQEKALMKAVA 127
Query: 61 N-QPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTEN 104
P+SVAI+ G +F Y+ GI F C + +DHGV VGYG E+
Sbjct: 128 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 4 AFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQP 63
A+ I + GG++TE+DY Y+ SC + AKV I D ++ N++K P
Sbjct: 71 AYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVY-IQDSVELSQNEQKLAAWLAKRGP 129
Query: 64 VSVAIEGGGMAFQLYESGI---FTGRCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSW 119
+SVAI GM Q Y GI C L DH V VGYG + +W +KNSWG+ W
Sbjct: 130 ISVAINAFGM--QFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDW 187
Query: 120 GEAGYIRMERNVAGTLTGKCGIAMEAS 146
GE GY + R +G CG+ AS
Sbjct: 188 GEKGYYYLHRG-----SGACGVNTMAS 209
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
++ AFE +I+ GGI + DYPY + + + + I +Y VP N K + +
Sbjct: 85 INNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLG 144
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG--------TENGAD--YWI 110
+SVA+ F Y+ GIF G CG L+H V VG+G T+ G Y+I
Sbjct: 145 PISISVAVSDD---FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYI 201
Query: 111 VKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEA 145
+KNSWG WGE G+I +E + +G L KCG+ +A
Sbjct: 202 IKNSWGQQWGERGFINIETDESG-LMRKCGLGTDA 235
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA 60
++ AFE +I+ GGI + DYPY + + + + I +Y VP N K + +
Sbjct: 84 INNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLG 143
Query: 61 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG--------TENGAD--YWI 110
+SVA+ F Y+ GIF G CG L+H V VG+G T+ G Y+I
Sbjct: 144 PISISVAVSDD---FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYI 200
Query: 111 VKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEA 145
+KNSWG WGE G+I +E + +G L KCG+ +A
Sbjct: 201 IKNSWGQQWGERGFINIETDESG-LMRKCGLGTDA 234
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 4 AFEFIIDNGGIDTEEDYPYKA-IDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ 62
AF+ +ID GG+ +++DYPY + + +C+ R N + TI Y +P D+K +
Sbjct: 90 AFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERY-TIKSYVSIP--DDKFKEALRYLG 146
Query: 63 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD----------YWIVK 112
P+S++I F Y G + G CG + +H V VGYG ++ + Y+I+K
Sbjct: 147 PISISIAASD-DFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIK 205
Query: 113 NSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEA 145
NSWGS WGE GYI +E + G C I EA
Sbjct: 206 NSWGSDWGEGGYINLETDENG-YKKTCSIGTEA 237
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 5 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPV 64
E+I NG ++ E YPY A + C R N++ I +Y + D K +++A+
Sbjct: 81 IEYIQQNGVVE-ERSYPYVAREQRCR--RPNSQHYGISNYCQIYPPDVKQIREALTQTHT 137
Query: 65 SVAIEGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGS 117
++A+ G + ++ + GR D H V VGYG+ G DYWIV+NSW +
Sbjct: 138 AIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDT 195
Query: 118 SWGEAGY 124
+WG++GY
Sbjct: 196 TWGDSGY 202
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 13 GIDTEEDYPYKAIDGSCDT----YRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 68
G+ E +PY A D C R + N+ + V + P++VA
Sbjct: 290 GVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAF 349
Query: 69 EGGGMAFQLYESGIFTGRCGTS--------LDHGVTAVGYGTE--NGADYWIVKNSWGSS 118
E F Y SGI+ G S +H V VGYG + G DYWIVKNSWGS
Sbjct: 350 EVHD-DFLHYHSGIYH-HTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQ 407
Query: 119 WGEAGYIRMER 129
WGE+GY R+ R
Sbjct: 408 WGESGYFRIRR 418
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 50 NDEKALQKAVANQPVSVAIEGGGMA---FQLYESGIFTGRCGTSLD-HGVTAVGYGTENG 105
NDEKA+QK + +E G F Y+SGI+ G +L H + +G+G EN
Sbjct: 157 NDEKAIQKEIMKYG---PVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENK 213
Query: 106 ADYWIVKNSWGSSWGEAGYIRMER 129
A YW++ NSW WGE GY R+ R
Sbjct: 214 APYWLIANSWNEDWGENGYFRIVR 237
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 28/144 (19%)
Query: 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR--------------KNAKVVTIDDYEDV 47
DYA + GI E Y+A D CD + +N + + DY +
Sbjct: 116 DYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL 170
Query: 48 PLNDEKALQKAVANQPVSVAIEGGGMAFQL---YESGIFTGRCGTS-LDHGVTAVGYGTE 103
EK + + AN P+S I MA + Y GI+ T+ ++H V+ G+G
Sbjct: 171 S-GREKMMAEIYANGPISCGI----MATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS 225
Query: 104 NGADYWIVKNSWGSSWGEAGYIRM 127
+G +YWIV+NSWG WGE G++R+
Sbjct: 226 DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 28/144 (19%)
Query: 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR--------------KNAKVVTIDDYEDV 47
DYA + GI E Y+A D CD + +N + + DY +
Sbjct: 81 DYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL 135
Query: 48 PLNDEKALQKAVANQPVSVAIEGGGMAFQL---YESGIFTGRCGTS-LDHGVTAVGYGTE 103
EK + + AN P+S I MA + Y GI+ T+ ++H V+ G+G
Sbjct: 136 S-GREKMMAEIYANGPISCGI----MATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS 190
Query: 104 NGADYWIVKNSWGSSWGEAGYIRM 127
+G +YWIV+NSWG WGE G++R+
Sbjct: 191 DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 9 IDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 68
I + G+ E Y Y A + SC R NA+ I +Y + + +++A+A ++A+
Sbjct: 83 IQHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAV 140
Query: 69 EGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWGE 121
G + + GR D H V VGY G DYWIV+NSW ++WG+
Sbjct: 141 IIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGD 198
Query: 122 AGY 124
GY
Sbjct: 199 NGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 9 IDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 68
I + G+ E Y Y A + SC R NA+ I +Y + + +++A+A ++A+
Sbjct: 83 IQHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAV 140
Query: 69 EGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWGE 121
G + + GR D H V VGY G DYWIV+NSW ++WG+
Sbjct: 141 IIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGD 198
Query: 122 AGY 124
GY
Sbjct: 199 NGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 9 IDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 68
I + G+ E Y Y A + SC R NA+ I +Y + + +++A+A ++A+
Sbjct: 83 IQHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAV 140
Query: 69 EGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWGE 121
G + + GR D H V VGY G DYWIV+NSW ++WG+
Sbjct: 141 IIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGD 198
Query: 122 AGY 124
GY
Sbjct: 199 NGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 9 IDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDY-EDVPLNDEKALQKAVANQPVSVA 67
I + G+ E Y Y A + SC R NA+ I +Y + P N K +++A+A ++A
Sbjct: 163 IQHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPNANK-IREALAQTHSAIA 219
Query: 68 IEGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWG 120
+ G + + GR D H V VGY G DYWIV+NSW ++WG
Sbjct: 220 VIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWG 277
Query: 121 EAGY 124
+ GY
Sbjct: 278 DNGY 281
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 92 DHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMER 129
+H V VGYGT++ G DYWIVKNSWG+ WGE GY R+ R
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 419
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 92 DHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMER 129
+H V VGYGT++ G DYWIVKNSWG+ WGE GY R+ R
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 49
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 50 NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADY 108
N+++ + + N PV A F LY+SG++ G + H + +G+G ENG Y
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 214
Query: 109 WIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144
W+V NSW + WG+ G+ ++ R CGI E
Sbjct: 215 WLVANSWNTDWGDNGFFKILRG-----QDHCGIESE 245
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 50 NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADY 108
N+++ + + N PV A F LY+SG++ G + H + +G+G ENG Y
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 214
Query: 109 WIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144
W+V NSW + WG+ G+ ++ R CGI E
Sbjct: 215 WLVGNSWNTDWGDNGFFKILRG-----QDHCGIESE 245
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 243 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 299
Query: 134 TLTGKCGIAMEA 145
CGI E
Sbjct: 300 --QDHCGIESEV 309
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 50 NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADY 108
N+++ + + N PV A F LY+SG++ G + H + +G+G ENG Y
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 166
Query: 109 WIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144
W+V NSW + WG+ G+ ++ R CGI E
Sbjct: 167 WLVGNSWNTDWGDNGFFKILRG-----QDHCGIESE 197
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 242
Query: 134 TLTGKCGIAME 144
CGI E
Sbjct: 243 --QDHCGIESE 251
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 238
Query: 134 TLTGKCGIAMEA 145
CGI E
Sbjct: 239 --QDHCGIESEV 248
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 236
Query: 134 TLTGKCGIAMEA 145
CGI E
Sbjct: 237 --QDHCGIESEV 246
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 237
Query: 134 TLTGKCGIAMEA 145
CGI E
Sbjct: 238 --QDHCGIESEV 247
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 187
Query: 134 TLTGKCGIAMEA 145
CGI E
Sbjct: 188 --QDHCGIESEV 197
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 242 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 298
Query: 134 TLTGKCGIAME 144
CGI E
Sbjct: 299 --ENHCGIESE 307
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 186 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 242
Query: 134 TLTGKCGIAME 144
CGI E
Sbjct: 243 --ENHCGIESE 251
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 236
Query: 134 TLTGKCGIAME 144
CGI E
Sbjct: 237 --ENHCGIESE 245
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 241 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 297
Query: 134 TLTGKCGI 141
+ +CGI
Sbjct: 298 --SSECGI 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 263 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 319
Query: 134 TLTGKCGI 141
+ +CGI
Sbjct: 320 --SSECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 75 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 133
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 240 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 296
Query: 134 TLTGKCGI 141
+ +CGI
Sbjct: 297 --SSECGI 302
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 172 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDY 219
CDN SCP S+TCC G WGCCP+ A CC DH CCP Y
Sbjct: 5 CDNVSSCPSSDTCC-QLTSGE----WGCCPIPEAVCCSDHQHCCPQGY 47
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 172 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 229
CD SCP+ TCC + G AWGCCP A CC+DH CCP + C+ + GTC
Sbjct: 6 CDMEVSCPDGYTCC-RLQSG----AWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTC 57
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 173 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPH 217
D+ + CP+ +TCC V G+ WGCCP+ A+CC+D CCPH
Sbjct: 8 DSQFECPDFSTCC-VMVDGS----WGCCPMPQASCCEDRVHCCPH 47
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 53 KALQKAVANQPVSVA-IEGGGMAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGAD--- 107
K ++ V N+ +A I+ + + CG + DH V VGYG ++
Sbjct: 157 KIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEK 216
Query: 108 --YWIVKNSWGSSWGEAGYIRME 128
YWIV+NSWG WG+ GY +++
Sbjct: 217 KSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 53 KALQKAVANQPVSVA-IEGGGMAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGAD--- 107
K ++ V N+ +A I+ + + CG + DH V VGYG ++
Sbjct: 158 KIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEK 217
Query: 108 --YWIVKNSWGSSWGEAGYIRME 128
YWIV+NSWG WG+ GY +++
Sbjct: 218 KSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 107 DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 147
YW+VKNSWG WG GY++M ++ CGIA ASY
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKD----RRNHCGIASAASY 39
>pdb|1FWO|A Chain A, The Solution Structure Of A 35-Residue Fragment From The
GranulinEPITHELIN-Like Subdomain Of Rice Oryzain Beta
(Rob 382-416 (C398s,C399s,C407s,C413s))
Length = 35
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 171 VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLE 203
VCD+ +SCP +TC F + N WGC P+E
Sbjct: 3 VCDDNFSCPAGSTCSSAFGFRNLSLVWGCSPVE 35
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 93 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 127
H V VGY E ++ ++NSWG++ GE GY M
Sbjct: 237 HAVLCVGYDDE--IRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 218 NPCKAAGVCLMLLATCCED--DIVPHVLP 244
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 192 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 220
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 89 TSLDHGVTAVGYGT-ENGADYWIVKNSWGSS 118
T+ DHG G + G +Y+ VKNSWG++
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWGTN 344
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 91 LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYI 125
+ H +T ++ D W V+NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 91 LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYI 125
+ H +T ++ D W V+NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,509,843
Number of Sequences: 62578
Number of extensions: 304905
Number of successful extensions: 1171
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 126
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)