Query 026075
Match_columns 244
No_of_seqs 293 out of 1564
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.1E-39 4.6E-44 291.7 12.2 141 1-150 224-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 1.4E-36 3E-41 280.1 15.7 145 1-156 193-344 (348)
3 cd02698 Peptidase_C1A_Cathepsi 100.0 4.1E-36 8.9E-41 263.7 15.8 144 2-149 77-237 (239)
4 PTZ00021 falcipain-2; Provisio 100.0 2.5E-36 5.4E-41 287.6 13.8 144 1-150 333-488 (489)
5 KOG1543 Cysteine proteinase Ca 100.0 3.8E-36 8.3E-41 275.1 14.5 141 1-149 179-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 3.8E-36 8.1E-41 264.2 13.7 140 2-148 79-240 (243)
7 PTZ00200 cysteine proteinase; 100.0 5.6E-36 1.2E-40 283.5 14.6 143 1-151 302-446 (448)
8 cd02248 Peptidase_C1A Peptidas 100.0 2.2E-35 4.8E-40 251.8 15.5 139 2-148 69-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 2.3E-35 5E-40 258.6 14.5 137 2-146 75-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1.5E-34 3.3E-39 246.4 11.1 144 2-149 72-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 2E-32 4.4E-37 267.1 14.7 143 2-151 463-677 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 3.4E-32 7.3E-37 262.1 15.6 141 1-150 284-459 (548)
13 cd02619 Peptidase_C1 C1 Peptid 100.0 2.2E-28 4.8E-33 208.6 13.2 128 2-131 72-213 (223)
14 PTZ00462 Serine-repeat antigen 100.0 1.7E-28 3.7E-33 245.9 14.4 143 3-151 604-782 (1004)
15 smart00645 Pept_C1 Papain fami 99.9 1.6E-27 3.5E-32 200.1 10.8 97 2-144 70-169 (174)
16 KOG4296 Epithelin/granulin [Si 99.9 1.2E-26 2.5E-31 169.3 4.9 69 172-240 1-69 (90)
17 KOG1544 Predicted cysteine pro 99.9 9.4E-25 2E-29 195.7 8.3 139 1-146 281-456 (470)
18 smart00277 GRAN Granulin. 99.9 3.5E-24 7.7E-29 144.0 3.4 51 173-229 1-51 (51)
19 PF00396 Granulin: Granulin; 99.8 6.1E-20 1.3E-24 119.8 2.1 43 183-231 1-43 (43)
20 cd00585 Peptidase_C1B Peptidas 99.7 2.3E-17 4.9E-22 156.2 8.1 88 41-130 286-399 (437)
21 COG4870 Cysteine protease [Pos 99.6 2.1E-15 4.6E-20 137.8 7.3 76 55-132 227-315 (372)
22 PF03051 Peptidase_C1_2: Pepti 99.1 4.3E-10 9.4E-15 106.9 9.7 85 43-129 289-399 (438)
23 COG3579 PepC Aminopeptidase C 97.5 6.8E-05 1.5E-09 68.9 3.0 75 52-128 297-400 (444)
24 PF13529 Peptidase_C39_2: Pept 96.2 0.024 5.2E-07 44.0 7.4 58 49-115 86-144 (144)
25 PF14399 Transpep_BrtH: NlpC/p 91.7 0.43 9.4E-06 42.9 6.0 55 52-113 78-133 (317)
26 COG4990 Uncharacterized protei 89.7 0.75 1.6E-05 39.1 5.2 52 45-116 116-168 (195)
27 PF05543 Peptidase_C47: Stapho 83.3 4.7 0.0001 34.1 6.7 55 51-117 90-146 (175)
28 KOG4128 Bleomycin hydrolases a 82.9 0.14 2.9E-06 47.6 -2.9 76 51-128 305-412 (457)
29 cd02549 Peptidase_C39A A sub-f 77.7 7.1 0.00015 30.3 5.8 44 55-115 70-114 (141)
30 cd00044 CysPc Calpains, domain 77.3 10 0.00023 34.4 7.5 26 92-117 236-263 (315)
31 PF09778 Guanylate_cyc_2: Guan 76.0 9.8 0.00021 33.2 6.5 59 51-113 112-180 (212)
32 PF07829 Toxin_14: Alpha-A con 63.6 2.7 5.9E-05 23.8 0.3 10 198-207 1-11 (26)
33 PF14625 Lustrin_cystein: Lust 59.6 6 0.00013 25.3 1.4 19 167-185 14-32 (45)
34 PF01640 Peptidase_C10: Peptid 56.7 55 0.0012 27.6 7.3 30 92-126 163-192 (192)
35 PF12385 Peptidase_C70: Papain 54.1 31 0.00067 28.9 5.1 38 51-103 97-135 (166)
36 smart00230 CysPc Calpain-like 30.7 91 0.002 28.5 4.9 26 92-117 228-255 (318)
37 smart00289 WR1 Worm-specific r 29.2 33 0.00071 20.7 1.2 21 167-187 11-31 (38)
38 KOG2675 Adenylate cyclase-asso 25.1 51 0.0011 31.9 2.2 9 94-102 143-151 (480)
39 cd00206 snake_toxin Snake toxi 23.3 1.1E+02 0.0024 21.0 3.2 45 172-219 11-62 (64)
40 PF00648 Peptidase_C2: Calpain 22.5 76 0.0017 28.3 2.8 27 91-117 213-243 (298)
41 PF12662 cEGF: Complement Clr- 20.8 66 0.0014 18.2 1.3 18 213-231 3-21 (24)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=291.71 Aligned_cols=141 Identities=39% Similarity=0.775 Sum_probs=123.6
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCC-cccCCcCCceEEEeeeeEecCCChHHHHHHHH-HcCCeEEEEecccccceec
Q 026075 1 MDYAFEFIIDNGGIDTEEDYPYKAIDG-SCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSVAIEGGGMAFQLY 78 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l-~~GPV~v~i~a~~~~f~~Y 78 (244)
|.+||+|+++.+||..|++|||+++.+ .|...+ ...++.|.+|..++. +|++|++.| .+|||+|+|++. .+|+|
T Consensus 224 ~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa~--~mQ~Y 299 (372)
T KOG1542|consen 224 MDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINAK--PMQFY 299 (372)
T ss_pred hhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEchH--HHHHh
Confidence 679999988888999999999999988 899865 566799999999987 556666655 569999999974 79999
Q ss_pred cCceEec---cCCCC-CCeeEEEEEeeccC-CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccceee
Q 026075 79 ESGIFTG---RCGTS-LDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 150 (244)
Q Consensus 79 ~sGIy~~---~c~~~-~nHaVliVGYg~~~-g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~ 150 (244)
++||+.+ .|+.. +||||||||||..+ .++|||||||||++|||+||+||.|| .|.|||++.++-+++
T Consensus 300 rgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG-----~N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 300 RGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRG-----SNACGIADMVSSAAV 371 (372)
T ss_pred cccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecc-----ccccccccchhhhhc
Confidence 9999987 68765 79999999999987 89999999999999999999999999 468999988876543
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.4e-36 Score=280.14 Aligned_cols=145 Identities=36% Similarity=0.714 Sum_probs=116.9
Q ss_pred ChHHHHHHHHc--CCCCCCCCCCcccCCC---cccCCcCCceEEEeeeeEecCCChHHHHHHHHH-cCCeEEEEeccccc
Q 026075 1 MDYAFEFIIDN--GGIDTEEDYPYKAIDG---SCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMA 74 (244)
Q Consensus 1 ~~~A~~yl~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~-~GPV~v~i~a~~~~ 74 (244)
+..||+|++++ +||.+|++|||++.++ .|.........+++++|..+.. ++++|+++|+ +|||+|+|++. +
T Consensus 193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~ 269 (348)
T PTZ00203 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--S 269 (348)
T ss_pred HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--h
Confidence 35799999864 6799999999998876 5864322223467889988876 6777888876 59999999984 7
Q ss_pred ceeccCceEeccCC-CCCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccceeecCC
Q 026075 75 FQLYESGIFTGRCG-TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQ 153 (244)
Q Consensus 75 f~~Y~sGIy~~~c~-~~~nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~~~~ 153 (244)
|++|++|||+. |. ..+||||+|||||+++|++|||||||||++|||+|||||+||. |.|||++.+... +.+
T Consensus 270 f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~-----n~Cgi~~~~~~~--~~~ 341 (348)
T PTZ00203 270 FMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV-----NACLLTGYPVSV--HVS 341 (348)
T ss_pred hcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC-----CcccccceEEEE--ecC
Confidence 99999999985 64 3579999999999988999999999999999999999999984 579998655443 444
Q ss_pred CCC
Q 026075 154 NPP 156 (244)
Q Consensus 154 ~~~ 156 (244)
+.+
T Consensus 342 ~~~ 344 (348)
T PTZ00203 342 QSP 344 (348)
T ss_pred CCC
Confidence 433
No 3
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=4.1e-36 Score=263.74 Aligned_cols=144 Identities=28% Similarity=0.616 Sum_probs=116.4
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCcccCCc--------------CCceEEEeeeeEecCCChHHHHHHHH-HcCCeEE
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR--------------KNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSV 66 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~~l~~~l-~~GPV~v 66 (244)
..||+|++++ ||++|++|||++.++.|.... +....+++++|..+. +++.|+++| ++|||+|
T Consensus 77 ~~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v 153 (239)
T cd02698 77 GGVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISC 153 (239)
T ss_pred HHHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEE
Confidence 5799999886 999999999998777675210 112356788887775 355666665 5699999
Q ss_pred EEecccccceeccCceEecc-CCCCCCeeEEEEEeeccC-CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeec
Q 026075 67 AIEGGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144 (244)
Q Consensus 67 ~i~a~~~~f~~Y~sGIy~~~-c~~~~nHaVliVGYg~~~-g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~ 144 (244)
+|++. .+|+.|++|||+.. |...++|||+|||||+++ +++|||||||||++|||+|||||+|+......+.|||+++
T Consensus 154 ~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 154 GIMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EEEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 99997 48999999999874 455679999999999876 9999999999999999999999999963222478999999
Q ss_pred cccee
Q 026075 145 ASYPI 149 (244)
Q Consensus 145 ~~yp~ 149 (244)
+.|+.
T Consensus 233 ~~~~~ 237 (239)
T cd02698 233 CAWAD 237 (239)
T ss_pred eEEEe
Confidence 88864
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2.5e-36 Score=287.60 Aligned_cols=144 Identities=40% Similarity=0.783 Sum_probs=122.1
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCC-CcccCCcCCceEEEeeeeEecCCChHHHHHHHHHc-CCeEEEEecccccceec
Q 026075 1 MDYAFEFIIDNGGIDTEEDYPYKAID-GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLY 78 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y 78 (244)
+..||+|+++++||++|++|||++.. +.|.... ....++|.+|..++ +++|+++|+. |||+|+|++. .+|++|
T Consensus 333 ~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i~a~-~~f~~Y 407 (489)
T PTZ00021 333 IPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRFLGPISVSIAVS-DDFAFY 407 (489)
T ss_pred hHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHhcCCeEEEEEee-cccccC
Confidence 35799999888899999999999974 7897532 23457899998885 4578888875 9999999996 589999
Q ss_pred cCceEeccCCCCCCeeEEEEEeeccC----------CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccce
Q 026075 79 ESGIFTGRCGTSLDHGVTAVGYGTEN----------GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 148 (244)
Q Consensus 79 ~sGIy~~~c~~~~nHaVliVGYg~~~----------g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp 148 (244)
++|||+..|+..++|||+|||||+++ +.+|||||||||++|||+|||||+|+.+.. .|+|||.+.++||
T Consensus 408 kgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~-~n~CGI~t~a~yP 486 (489)
T PTZ00021 408 KGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL-MKTCSLGTEAYVP 486 (489)
T ss_pred CCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC-CCCCCCcccceeE
Confidence 99999988887789999999999763 257999999999999999999999986432 5789999999999
Q ss_pred ee
Q 026075 149 IK 150 (244)
Q Consensus 149 ~~ 150 (244)
++
T Consensus 487 ~~ 488 (489)
T PTZ00021 487 LI 488 (489)
T ss_pred ec
Confidence 75
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-36 Score=275.06 Aligned_cols=141 Identities=53% Similarity=0.987 Sum_probs=122.1
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCCcccCCcCCceEEEeeeeEecCCChHHHHHHHHHc-CCeEEEEecccccceecc
Q 026075 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYE 79 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y~ 79 (244)
|..||+|++++|++.+|++|||.+.++.|..... ...+.+.++..++.+ +++|+++|++ |||+|+|++.. +|++|+
T Consensus 179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~ 255 (325)
T KOG1543|consen 179 PKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYK 255 (325)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhcc
Confidence 5689999999955555999999999999987655 567788899989876 7788888875 89999999985 999999
Q ss_pred CceEeccCC-C-CCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccc-ee
Q 026075 80 SGIFTGRCG-T-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY-PI 149 (244)
Q Consensus 80 sGIy~~~c~-~-~~nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~y-p~ 149 (244)
+|||.+.+. . .++|||+|||||+.++.+|||||||||++|||+|||||.|+. +.|+|++.++| |+
T Consensus 256 ~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~-----~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 256 GGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGV-----NKCGIASEASYGPI 323 (325)
T ss_pred CceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCC-----CchhhhcccccCCC
Confidence 999988644 4 589999999999966789999999999999999999999996 45889998888 54
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=3.8e-36 Score=264.21 Aligned_cols=140 Identities=36% Similarity=0.693 Sum_probs=111.9
Q ss_pred hHHHHHHHHcCCCCCCCCCCccc-CCCcccCCcCCceEEEeeeeEecC----CChHHHHHHHHH-cCCeEEEEecccccc
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKA-IDGSCDTYRKNAKVVTIDDYEDVP----LNDEKALQKAVA-NQPVSVAIEGGGMAF 75 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~v~----~~~~~~l~~~l~-~GPV~v~i~a~~~~f 75 (244)
..||+|++++ ||++|++|||++ ..+.|.........+++..|..+. ..++++||++|. +|||+|+|++. ++|
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F 156 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDF 156 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccc
Confidence 4789999877 999999999998 778897543122334444454442 236778888776 59999999997 689
Q ss_pred eeccCceEecc-----CCC---------CCCeeEEEEEeeccC--CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCce
Q 026075 76 QLYESGIFTGR-----CGT---------SLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKC 139 (244)
Q Consensus 76 ~~Y~sGIy~~~-----c~~---------~~nHaVliVGYg~~~--g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~C 139 (244)
++|++|||+.. |.. .++|||+|||||+++ |++|||||||||++|||+|||||+|+. |.|
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-----~~c 231 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-----NEC 231 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-----ccc
Confidence 99999999864 532 368999999999876 899999999999999999999999984 579
Q ss_pred eeeecccce
Q 026075 140 GIAMEASYP 148 (244)
Q Consensus 140 gI~~~~~yp 148 (244)
||++.+.+.
T Consensus 232 gi~~~~~~~ 240 (243)
T cd02621 232 GIESQAVFA 240 (243)
T ss_pred CcccceEee
Confidence 999887553
No 7
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.6e-36 Score=283.55 Aligned_cols=143 Identities=39% Similarity=0.727 Sum_probs=122.1
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCCcccCCcCCceEEEeeeeEecCCChHHHHHHHHHcCCeEEEEecccccceeccC
Q 026075 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYES 80 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~GPV~v~i~a~~~~f~~Y~s 80 (244)
+..||+|++++ ||++|++|||++.++.|.... ...+.|.+|..+. ..++|++++++|||+|+|++. .+|++|++
T Consensus 302 ~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~ 375 (448)
T PTZ00200 302 PDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDVLNKSLVISPTVVYIAVS-RELLKYKS 375 (448)
T ss_pred HHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHHHHHHHhcCCEEEEeecc-cccccCCC
Confidence 35799999776 999999999999999997543 3346788887664 356788888889999999997 68999999
Q ss_pred ceEeccCCCCCCeeEEEEEeec--cCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccceeec
Q 026075 81 GIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 151 (244)
Q Consensus 81 GIy~~~c~~~~nHaVliVGYg~--~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~~ 151 (244)
|||+..|+..++|||+|||||. ++|++|||||||||++|||+|||||+|+.. +.|.|||++.+.||++.
T Consensus 376 GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~--g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 376 GVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE--GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC--CCCcCCccccceeeEEe
Confidence 9999888877899999999984 468899999999999999999999999742 25789999999999863
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.2e-35 Score=251.84 Aligned_cols=139 Identities=55% Similarity=1.032 Sum_probs=119.9
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCcccCCcCCceEEEeeeeEecCCChHHHHHHHHHc-CCeEEEEecccccceeccC
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYES 80 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y~s 80 (244)
..||+|++++ ||++|++|||.+....|.... ..+.++|.+|..+...+++.||++|.+ |||+++|.+. ++|+.|++
T Consensus 69 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~ 145 (210)
T cd02248 69 DNAFEYVKNG-GLASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKG 145 (210)
T ss_pred HHhHHHHHHC-CcCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCC
Confidence 4789988766 999999999999888897643 356789999999987668889988876 8999999986 58999999
Q ss_pred ceEeccCC--CCCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccce
Q 026075 81 GIFTGRCG--TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 148 (244)
Q Consensus 81 GIy~~~c~--~~~nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp 148 (244)
|||+.... ...+|||+|||||++.+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 146 Giy~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~~ 210 (210)
T cd02248 146 GIYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS-----NLCGIASYASYP 210 (210)
T ss_pred CceeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC-----CccCceeeeecC
Confidence 99987433 4568999999999988999999999999999999999999984 579999887765
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.3e-35 Score=258.57 Aligned_cols=137 Identities=33% Similarity=0.631 Sum_probs=109.7
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCc------------------ccCCcC---CceEEEeeeeEecCCChHHHHHHHHH
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAIDGS------------------CDTYRK---NAKVVTIDDYEDVPLNDEKALQKAVA 60 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~~l~~~l~ 60 (244)
..||+||+++ ||++|++|||++.+.. |..... ....+++..+..+.. ++++||++|.
T Consensus 75 ~~a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~ 152 (236)
T cd02620 75 DAAWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPS-DETDIMKEIM 152 (236)
T ss_pred HHHHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCC-HHHHHHHHHH
Confidence 5799999877 9999999999986543 432211 122345556666653 6778887775
Q ss_pred -cCCeEEEEecccccceeccCceEeccCCC-CCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCc
Q 026075 61 -NQPVSVAIEGGGMAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGK 138 (244)
Q Consensus 61 -~GPV~v~i~a~~~~f~~Y~sGIy~~~c~~-~~nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~ 138 (244)
+|||+|+|++. ++|+.|++|||+..+.. ..+|||+|||||+++|++|||||||||++|||+|||||+|+. +.
T Consensus 153 ~~GPv~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~-----~~ 226 (236)
T cd02620 153 TNGPVQAAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS-----NE 226 (236)
T ss_pred HCCCeEEEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC-----cc
Confidence 59999999995 68999999999875554 358999999999989999999999999999999999999983 57
Q ss_pred eeeeeccc
Q 026075 139 CGIAMEAS 146 (244)
Q Consensus 139 CgI~~~~~ 146 (244)
|||+++++
T Consensus 227 cgi~~~~~ 234 (236)
T cd02620 227 CGIESEVV 234 (236)
T ss_pred ccccccee
Confidence 99998764
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.5e-34 Score=246.40 Aligned_cols=144 Identities=43% Similarity=0.812 Sum_probs=121.2
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCC-CcccCCcCCceEEEeeeeEecCCChHHHHHHHHHc-CCeEEEEecccccceecc
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAID-GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYE 79 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y~ 79 (244)
.+||+|++++.||++|++|||.... ..|.........+++.+|..+...++++||++|.+ |||+++|.+...+|+.|+
T Consensus 72 ~~a~~~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~ 151 (219)
T PF00112_consen 72 FDALKYIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYK 151 (219)
T ss_dssp HHHHHHHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEE
T ss_pred cccceeecccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeecccccccccc
Confidence 5799999984599999999999887 68876533333578999999987778889988876 999999999854699999
Q ss_pred CceEecc-CCC-CCCeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeeccccee
Q 026075 80 SGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 149 (244)
Q Consensus 80 sGIy~~~-c~~-~~nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~ 149 (244)
+|||+.. +.. ..+|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+.+++||+
T Consensus 152 ~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~----~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 152 SGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN----NECGIESQAVYPI 219 (219)
T ss_dssp SSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS----SGGGTTSSEEEEE
T ss_pred ceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC----CcCccCceeeecC
Confidence 9999874 553 5699999999999999999999999999999999999999853 4799999999986
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.98 E-value=2e-32 Score=267.12 Aligned_cols=143 Identities=28% Similarity=0.586 Sum_probs=111.3
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCcccCCcCC--------------------------------------ceEEEeee
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKN--------------------------------------AKVVTIDD 43 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~~~~i~~ 43 (244)
..||+|++++ ||++|++|||++..+.|...... ..++.+++
T Consensus 463 ~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~ 541 (693)
T PTZ00049 463 YLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKD 541 (693)
T ss_pred HHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeee
Confidence 5799999776 99999999999988888542110 11234566
Q ss_pred eEecC-------CChHHHHHHHHH-cCCeEEEEecccccceeccCceEec-------cCCC---------------CCCe
Q 026075 44 YEDVP-------LNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG-------RCGT---------------SLDH 93 (244)
Q Consensus 44 y~~v~-------~~~~~~l~~~l~-~GPV~v~i~a~~~~f~~Y~sGIy~~-------~c~~---------------~~nH 93 (244)
|..|. .++++.|+++|. +|||+|+|++. .+|++|++|||+. .|.. .++|
T Consensus 542 y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NH 620 (693)
T PTZ00049 542 YNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNH 620 (693)
T ss_pred eEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccccccCce
Confidence 66653 134666666665 69999999996 5899999999974 2532 3699
Q ss_pred eEEEEEeecc--CCe--eEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeecccceeec
Q 026075 94 GVTAVGYGTE--NGA--DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 151 (244)
Q Consensus 94 aVliVGYg~~--~g~--~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~~ 151 (244)
||+|||||++ +|. +|||||||||++||++|||||+||. |.|||++++.|+...
T Consensus 621 AVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~-----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 621 AIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK-----NFSGIESQSLFIEPD 677 (693)
T ss_pred EEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC-----CccCCccceeEEeee
Confidence 9999999975 463 8999999999999999999999994 579999999887644
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.98 E-value=3.4e-32 Score=262.09 Aligned_cols=141 Identities=27% Similarity=0.498 Sum_probs=107.9
Q ss_pred ChHHHHHHHHcCCCCCCCCC--CcccCCC---cccCCcCCceEEE------eeeeEecCCChHHHHHHHHH-cCCeEEEE
Q 026075 1 MDYAFEFIIDNGGIDTEEDY--PYKAIDG---SCDTYRKNAKVVT------IDDYEDVPLNDEKALQKAVA-NQPVSVAI 68 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~~------i~~y~~v~~~~~~~l~~~l~-~GPV~v~i 68 (244)
+..||+|++++ ||++|++| ||++.++ .|+.... ...++ |.+|..+.. ++++|+++|. +|||+|+|
T Consensus 284 p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~~-~e~~I~~eI~~~GPVsVaI 360 (548)
T PTZ00364 284 PEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAVT-DPDEIIWEIYRHGPVPASV 360 (548)
T ss_pred HHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecCC-cHHHHHHHHHHcCCeEEEE
Confidence 35799999776 99999999 9998766 4865332 22333 344444443 5566666665 69999999
Q ss_pred ecccccceeccCceEec---------cC-----------CCCCCeeEEEEEeec-cCCeeEEEEEcCCCC--CCCCCceE
Q 026075 69 EGGGMAFQLYESGIFTG---------RC-----------GTSLDHGVTAVGYGT-ENGADYWIVKNSWGS--SWGEAGYI 125 (244)
Q Consensus 69 ~a~~~~f~~Y~sGIy~~---------~c-----------~~~~nHaVliVGYg~-~~g~~YWIikNSWG~--~WGe~GY~ 125 (244)
++. .+|+.|++|||.. .| ...+||||+|||||+ ++|.+|||||||||+ +|||+|||
T Consensus 361 da~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYf 439 (548)
T PTZ00364 361 YAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR 439 (548)
T ss_pred Eec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeE
Confidence 997 5788999999852 11 134699999999997 478999999999999 99999999
Q ss_pred EEEecCCCCCCCceeeeecccceee
Q 026075 126 RMERNVAGTLTGKCGIAMEASYPIK 150 (244)
Q Consensus 126 rI~rg~~~~~~g~CgI~~~~~yp~~ 150 (244)
||+||. |.|||++++.....
T Consensus 440 RI~RG~-----N~CGIes~~v~~~~ 459 (548)
T PTZ00364 440 KIARGV-----NAYNIESEVVVMYW 459 (548)
T ss_pred EEEcCC-----Ccccccceeeeeee
Confidence 999984 57999998774433
No 13
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.96 E-value=2.2e-28 Score=208.60 Aligned_cols=128 Identities=33% Similarity=0.503 Sum_probs=105.2
Q ss_pred hHHHH-HHHHcCCCCCCCCCCcccCCCcccCC---cCCceEEEeeeeEecCCChHHHHHHHHHc-CCeEEEEecccccce
Q 026075 2 DYAFE-FIIDNGGIDTEEDYPYKAIDGSCDTY---RKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQ 76 (244)
Q Consensus 2 ~~A~~-yl~~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~v~~~~~~~l~~~l~~-GPV~v~i~a~~~~f~ 76 (244)
..|+. +++++ ||++|++|||......|... ......+++..|..+...++++||++|.+ |||+++|.+. ..|.
T Consensus 72 ~~~~~~~~~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~ 149 (223)
T cd02619 72 LSALLKLVALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFD 149 (223)
T ss_pred HHHHHHHHHHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchh
Confidence 35676 66555 99999999999987776532 23345688999999987778899999976 8999999987 6899
Q ss_pred eccCceEe-----c-cCC-CCCCeeEEEEEeeccC--CeeEEEEEcCCCCCCCCCceEEEEecC
Q 026075 77 LYESGIFT-----G-RCG-TSLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNV 131 (244)
Q Consensus 77 ~Y~sGIy~-----~-~c~-~~~nHaVliVGYg~~~--g~~YWIikNSWG~~WGe~GY~rI~rg~ 131 (244)
.|++|+|. . .+. ...+|||+|||||++. +++|||||||||++||++||+||.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 150 RLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred cccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 99999862 1 222 3468999999999886 899999999999999999999999974
No 14
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=245.94 Aligned_cols=143 Identities=27% Similarity=0.507 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCCCCCCCCccc--CCCcccCCcC-----------------CceEEEeeeeEecCCC----h----HHHH
Q 026075 3 YAFEFIIDNGGIDTEEDYPYKA--IDGSCDTYRK-----------------NAKVVTIDDYEDVPLN----D----EKAL 55 (244)
Q Consensus 3 ~A~~yl~~~~Gi~~e~~yPY~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~l 55 (244)
.+++|+++++||++|++|||.+ ..+.|..... ....+.+.+|..+... + +++|
T Consensus 604 efl~yI~e~GgLptESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~I 683 (1004)
T PTZ00462 604 EFLQIIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKII 683 (1004)
T ss_pred HHHHHHHHcCCCcccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHH
Confidence 3568888887899999999985 5567864211 0113345667666432 1 3577
Q ss_pred HHHHHc-CCeEEEEecccccceec-cCceEe-ccCCC-CCCeeEEEEEeecc-----CCeeEEEEEcCCCCCCCCCceEE
Q 026075 56 QKAVAN-QPVSVAIEGGGMAFQLY-ESGIFT-GRCGT-SLDHGVTAVGYGTE-----NGADYWIVKNSWGSSWGEAGYIR 126 (244)
Q Consensus 56 ~~~l~~-GPV~v~i~a~~~~f~~Y-~sGIy~-~~c~~-~~nHaVliVGYg~~-----~g~~YWIikNSWG~~WGe~GY~r 126 (244)
+++|++ |||+|+|++. +|+.| ++|||. ..|+. .++|||+|||||++ ++++|||||||||++|||+||||
T Consensus 684 K~eI~~kGPVaV~IdAs--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFK 761 (1004)
T PTZ00462 684 KDEIMNKGSVIAYIKAE--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFK 761 (1004)
T ss_pred HHHHHhcCCEEEEEEee--hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEE
Confidence 887775 9999999985 58888 589864 46874 57999999999964 25799999999999999999999
Q ss_pred EEecCCCCCCCceeeeecccceeec
Q 026075 127 MERNVAGTLTGKCGIAMEASYPIKK 151 (244)
Q Consensus 127 I~rg~~~~~~g~CgI~~~~~yp~~~ 151 (244)
|.|+. .+.|||.....+++..
T Consensus 762 I~r~g----~n~CGin~i~t~~~fn 782 (1004)
T PTZ00462 762 VDMYG----PSHCEDNFIHSVVIFN 782 (1004)
T ss_pred EEeCC----CCCCccchheeeeeEe
Confidence 99843 4679998777777655
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.95 E-value=1.6e-27 Score=200.07 Aligned_cols=97 Identities=59% Similarity=1.172 Sum_probs=83.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCcccCCcCCceEEEeeeeEecCCChHHHHHHHHHcCCeEEEEecccccceeccCc
Q 026075 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESG 81 (244)
Q Consensus 2 ~~A~~yl~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~~l~~GPV~v~i~a~~~~f~~Y~sG 81 (244)
..||+|+++++||++|++|||++ ++.+.+. +|++|++|
T Consensus 70 ~~a~~~~~~~~Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~G 107 (174)
T smart00645 70 DNAFEYIKKNGGLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSG 107 (174)
T ss_pred HHHHHHHHHcCCcccccccCccc----------------------------------------EEEEEcc--cccCCcCe
Confidence 57999998766899999999976 5666664 59999999
Q ss_pred eEec-cCCCC-CCeeEEEEEeecc-CCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCceeeeec
Q 026075 82 IFTG-RCGTS-LDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144 (244)
Q Consensus 82 Iy~~-~c~~~-~nHaVliVGYg~~-~g~~YWIikNSWG~~WGe~GY~rI~rg~~~~~~g~CgI~~~ 144 (244)
||+. .|... .+|+|+|||||++ +|++|||||||||++||++|||||.|+. .+.|+|+..
T Consensus 108 i~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~----~~~c~i~~~ 169 (174)
T smart00645 108 IYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK----NNECGIEAS 169 (174)
T ss_pred EECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC----CCccCceee
Confidence 9987 47643 6999999999987 8999999999999999999999999984 257999654
No 16
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-26 Score=169.34 Aligned_cols=69 Identities=54% Similarity=1.489 Sum_probs=65.6
Q ss_pred CCCceecCCCCcccccccCCCccceeccccCCCceecCCCCCcCCCCCCcccCCCCeeeccCCCcccce
Q 026075 172 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMVRYAKFCWY 240 (244)
Q Consensus 172 C~~~~~c~~~~tCc~~~~~~~~~~~~~ccp~~~avcc~d~~hCcp~~~~~c~~~~~~c~~~~~~~~~~~ 240 (244)
||.+++||+++||||+.+.+++|.+|||||+++||||.|+.||||||||+||+.+++|++..+++++..
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sik 69 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIK 69 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccch
Confidence 789999999999999999999999999999999999999999999999999999999999998876544
No 17
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.91 E-value=9.4e-25 Score=195.69 Aligned_cols=139 Identities=27% Similarity=0.555 Sum_probs=108.8
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCC----CcccC------------------CcC-CceEEEeeeeEecCCChHHHHHH
Q 026075 1 MDYAFEFIIDNGGIDTEEDYPYKAID----GSCDT------------------YRK-NAKVVTIDDYEDVPLNDEKALQK 57 (244)
Q Consensus 1 ~~~A~~yl~~~~Gi~~e~~yPY~~~~----~~C~~------------------~~~-~~~~~~i~~y~~v~~~~~~~l~~ 57 (244)
+++|+=||.+. |++.+.+|||.+.+ +.|.. ... +.++++.+--.+|.++++++|++
T Consensus 281 lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkE 359 (470)
T KOG1544|consen 281 LDRAWWYLRKR-GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKE 359 (470)
T ss_pred ccchheeeecc-cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHH
Confidence 47899998776 99999999998633 22321 111 12456666666777888889999
Q ss_pred HHHcCCeEEEEecccccceeccCceEeccCC---------CCCCeeEEEEEeeccC-----CeeEEEEEcCCCCCCCCCc
Q 026075 58 AVANQPVSVAIEGGGMAFQLYESGIFTGRCG---------TSLDHGVTAVGYGTEN-----GADYWIVKNSWGSSWGEAG 123 (244)
Q Consensus 58 ~l~~GPV~v~i~a~~~~f~~Y~sGIy~~~c~---------~~~nHaVliVGYg~~~-----g~~YWIikNSWG~~WGe~G 123 (244)
++.+|||.+.|.+- ++|..|++|||.+.-. ....|+|.|.|||++. ..+|||..||||+.|||+|
T Consensus 360 lM~NGPVQA~m~VH-EDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~G 438 (470)
T KOG1544|consen 360 LMENGPVQALMEVH-EDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG 438 (470)
T ss_pred HHhCCChhhhhhhh-hhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCc
Confidence 99999999999885 7899999999976321 1247999999999873 3689999999999999999
Q ss_pred eEEEEecCCCCCCCceeeeeccc
Q 026075 124 YIRMERNVAGTLTGKCGIAMEAS 146 (244)
Q Consensus 124 Y~rI~rg~~~~~~g~CgI~~~~~ 146 (244)
||||.||. |.|-|++.+.
T Consensus 439 YFriLRGv-----NecdIEsfvI 456 (470)
T KOG1544|consen 439 YFRILRGV-----NECDIESFVI 456 (470)
T ss_pred eEEEeccc-----cchhhhHhhh
Confidence 99999996 5699987653
No 18
>smart00277 GRAN Granulin.
Probab=99.89 E-value=3.5e-24 Score=143.99 Aligned_cols=51 Identities=51% Similarity=1.357 Sum_probs=48.7
Q ss_pred CCceecCCCCcccccccCCCccceeccccCCCceecCCCCCcCCCCCCcccCCCCee
Q 026075 173 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 229 (244)
Q Consensus 173 ~~~~~c~~~~tCc~~~~~~~~~~~~~ccp~~~avcc~d~~hCcp~~~~~c~~~~~~c 229 (244)
|++++||+++|||++.+ ++||||||++||||+|+.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56899999999999999 8999999999999999999999999 999999887
No 19
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.78 E-value=6.1e-20 Score=119.82 Aligned_cols=43 Identities=44% Similarity=1.229 Sum_probs=40.3
Q ss_pred cccccccCCCccceeccccCCCceecCCCCCcCCCCCCcccCCCCeeec
Q 026075 183 TCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLM 231 (244)
Q Consensus 183 tCc~~~~~~~~~~~~~ccp~~~avcc~d~~hCcp~~~~~c~~~~~~c~~ 231 (244)
|||++.+ +.|||||+++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 8999888 7899999999999999999999999 99999999986
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.70 E-value=2.3e-17 Score=156.20 Aligned_cols=88 Identities=27% Similarity=0.488 Sum_probs=67.3
Q ss_pred eeeeEecCCChHHHHH-HHHHc-CCeEEEEecccccceeccCceEecc---------------------C-CCCCCeeEE
Q 026075 41 IDDYEDVPLNDEKALQ-KAVAN-QPVSVAIEGGGMAFQLYESGIFTGR---------------------C-GTSLDHGVT 96 (244)
Q Consensus 41 i~~y~~v~~~~~~~l~-~~l~~-GPV~v~i~a~~~~f~~Y~sGIy~~~---------------------c-~~~~nHaVl 96 (244)
...|.+++.++...+. ++|+. +||.+++++. .|+.|++||++.. + .+..+|||+
T Consensus 286 ~~~y~Nvp~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ 363 (437)
T cd00585 286 PILYLNVPMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMV 363 (437)
T ss_pred cceEEecCHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEE
Confidence 3467777643333222 46666 4999999996 4779999999653 1 234689999
Q ss_pred EEEeecc-CCe-eEEEEEcCCCCCCCCCceEEEEec
Q 026075 97 AVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRMERN 130 (244)
Q Consensus 97 iVGYg~~-~g~-~YWIikNSWG~~WGe~GY~rI~rg 130 (244)
|||||.+ +|+ .||+||||||+.||++||++|+++
T Consensus 364 ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 364 LTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 9999975 476 699999999999999999999875
No 21
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.1e-15 Score=137.78 Aligned_cols=76 Identities=29% Similarity=0.476 Sum_probs=51.7
Q ss_pred HHHHHHc-CCeE--EEEecccccceeccCceEeccCCCCCCeeEEEEEeecc----------CCeeEEEEEcCCCCCCCC
Q 026075 55 LQKAVAN-QPVS--VAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE----------NGADYWIVKNSWGSSWGE 121 (244)
Q Consensus 55 l~~~l~~-GPV~--v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~----------~g~~YWIikNSWG~~WGe 121 (244)
+++++.. |-++ +.|++. .++ ...-+.|........+|||+||||++. .|...||||||||++||+
T Consensus 227 i~~~~~~yg~~s~~~~id~~-~~~-~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~ 304 (372)
T COG4870 227 IKAMFGFYGAVSSSMYIDAT-NSL-GICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGE 304 (372)
T ss_pred hHHHHhhhccccceeEEecc-ccc-ccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECcccccccc
Confidence 5555543 5433 345554 222 222334443333556999999999975 245699999999999999
Q ss_pred CceEEEEecCC
Q 026075 122 AGYIRMERNVA 132 (244)
Q Consensus 122 ~GY~rI~rg~~ 132 (244)
+|||||.+...
T Consensus 305 ~GYfwisY~ya 315 (372)
T COG4870 305 NGYFWISYYYA 315 (372)
T ss_pred CceEEEEeeec
Confidence 99999998754
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.09 E-value=4.3e-10 Score=106.90 Aligned_cols=85 Identities=31% Similarity=0.599 Sum_probs=58.3
Q ss_pred eeEecCCCh-HHHHHHHHHcC-CeEEEEecccccceeccCceEeccC-------C---------------CCCCeeEEEE
Q 026075 43 DYEDVPLND-EKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRC-------G---------------TSLDHGVTAV 98 (244)
Q Consensus 43 ~y~~v~~~~-~~~l~~~l~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c-------~---------------~~~nHaVliV 98 (244)
.|.+++..+ .+++.++|..| ||..+-++. . +...+.||++... + +..+|||+||
T Consensus 289 ~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~it 366 (438)
T PF03051_consen 289 RYLNVPIDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVIT 366 (438)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEE
T ss_pred eEeccCHHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEE
Confidence 466665322 22334455677 999999996 3 4567889986432 0 1248999999
Q ss_pred Eeec-cCCe-eEEEEEcCCCCCCCCCceEEEEe
Q 026075 99 GYGT-ENGA-DYWIVKNSWGSSWGEAGYIRMER 129 (244)
Q Consensus 99 GYg~-~~g~-~YWIikNSWG~~WGe~GY~rI~r 129 (244)
|.+. ++|+ .+|+|+||||+..|.+||+.|+.
T Consensus 367 Gv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 367 GVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp EEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred EEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 9996 5676 59999999999999999999984
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=97.49 E-value=6.8e-05 Score=68.85 Aligned_cols=75 Identities=25% Similarity=0.469 Sum_probs=54.9
Q ss_pred HHHHHHHH----HcC-CeEEEEecccccceeccCceEeccC-------C--------C-------CCCeeEEEEEeecc-
Q 026075 52 EKALQKAV----ANQ-PVSVAIEGGGMAFQLYESGIFTGRC-------G--------T-------SLDHGVTAVGYGTE- 103 (244)
Q Consensus 52 ~~~l~~~l----~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c-------~--------~-------~~nHaVliVGYg~~- 103 (244)
.+.++++. +.| +|-.+-++. .|..-+.||.+.+- + . -+.|||+|.|.+.+
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 44555443 346 898898885 57788888864310 0 0 13799999999954
Q ss_pred CCee-EEEEEcCCCCCCCCCceEEEE
Q 026075 104 NGAD-YWIVKNSWGSSWGEAGYIRME 128 (244)
Q Consensus 104 ~g~~-YWIikNSWG~~WGe~GY~rI~ 128 (244)
+|.+ -|.|+||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 5544 699999999999999999886
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.20 E-value=0.024 Score=44.02 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHcC-CeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeeccCCeeEEEEEcCC
Q 026075 49 LNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSW 115 (244)
Q Consensus 49 ~~~~~~l~~~l~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~~g~~YWIikNSW 115 (244)
..+.+.|++.|.+| ||++.+....... .+..+.. ....|.|+|+||+++. +++|..+|
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~---~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDG---TYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE----TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCC---CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 44678889999987 9999997431111 1112211 2357999999999853 77887776
No 25
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.65 E-value=0.43 Score=42.90 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=36.1
Q ss_pred HHHHHHHHHcC-CeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeeccCCeeEEEEEc
Q 026075 52 EKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKN 113 (244)
Q Consensus 52 ~~~l~~~l~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~~g~~YWIikN 113 (244)
.+.+++.|.+| ||.+.++.. +.-|...-|. .....|.|+|+||++++ ..|.|+-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC
Confidence 45677788888 999998875 3344433221 12347999999999753 34666543
No 26
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.66 E-value=0.75 Score=39.13 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=36.6
Q ss_pred EecCCChHHHHHHHHHcC-CeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeeccCCeeEEEEEcCCC
Q 026075 45 EDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116 (244)
Q Consensus 45 ~~v~~~~~~~l~~~l~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~~g~~YWIikNSWG 116 (244)
..+...+...|+.+|.+| ||.+-.-.. -. ..-|+|+|+||++. |+..-+.||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~~----~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTNF----HS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEecc----cc------------cceeeeEeeccccc----ceEeccccc
Confidence 445566788899999886 988766432 11 23599999999964 566666774
No 27
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=83.33 E-value=4.7 Score=34.10 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=33.8
Q ss_pred hHHHHHHHHHc-CCeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeec-cCCeeEEEEEcCCCC
Q 026075 51 DEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT-ENGADYWIVKNSWGS 117 (244)
Q Consensus 51 ~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~-~~g~~YWIikNSWG~ 117 (244)
+-+++++.+.+ -||.+..+.... .-+...+|||+||||-. .+|.++.++=|-|-.
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGya~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGYAKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEEEEETTSEEEEEEE-TT-S
T ss_pred CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEeeeecCCCCeEEEEeCCccC
Confidence 35566776665 477776654310 11234589999999987 467999999898843
No 28
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=82.95 E-value=0.14 Score=47.56 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=51.7
Q ss_pred hHHHHHHHHH---cC--CeEEEEecccccceeccCceEec-----c--------C-C--C-------CCCeeEEEEEeec
Q 026075 51 DEKALQKAVA---NQ--PVSVAIEGGGMAFQLYESGIFTG-----R--------C-G--T-------SLDHGVTAVGYGT 102 (244)
Q Consensus 51 ~~~~l~~~l~---~G--PV~v~i~a~~~~f~~Y~sGIy~~-----~--------c-~--~-------~~nHaVliVGYg~ 102 (244)
+.+.++++++ +| +|-.+-+.. -|..-++|+.+- + . . . ...|||++.|-+.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~--k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIR--KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccH--hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 4566777664 23 787777764 455567775421 1 0 1 0 1379999999983
Q ss_pred c----CCeeEEEEEcCCCCCCCCCceEEEE
Q 026075 103 E----NGADYWIVKNSWGSSWGEAGYIRME 128 (244)
Q Consensus 103 ~----~g~~YWIikNSWG~~WGe~GY~rI~ 128 (244)
. ++-.-|-|.||||++-|.+||..+.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 2 3455799999999999999997664
No 29
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=77.74 E-value=7.1 Score=30.25 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=28.9
Q ss_pred HHHHHHcC-CeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeeccCCeeEEEEEcCC
Q 026075 55 LQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSW 115 (244)
Q Consensus 55 l~~~l~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~~g~~YWIikNSW 115 (244)
+++.+..| ||++.++.. + -....+|.|+|+||+. ....+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 67788776 999887641 0 0123579999999982 1235566665
No 30
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=77.31 E-value=10 Score=34.41 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.4
Q ss_pred CeeEEEEEeeccC--CeeEEEEEcCCCC
Q 026075 92 DHGVTAVGYGTEN--GADYWIVKNSWGS 117 (244)
Q Consensus 92 nHaVliVGYg~~~--g~~YWIikNSWG~ 117 (244)
+||-.|+++.+.+ +.....|||-||.
T Consensus 236 ~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 236 GHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred CcceEEeEEEEEccCceEEEEecCCccC
Confidence 8999999998766 8899999999994
No 31
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=76.04 E-value=9.8 Score=33.21 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=33.6
Q ss_pred hHHHHHHHHHcC-CeEEEEecccccceec--cCceEec---cC----CCCCCeeEEEEEeeccCCeeEEEEEc
Q 026075 51 DEKALQKAVANQ-PVSVAIEGGGMAFQLY--ESGIFTG---RC----GTSLDHGVTAVGYGTENGADYWIVKN 113 (244)
Q Consensus 51 ~~~~l~~~l~~G-PV~v~i~a~~~~f~~Y--~sGIy~~---~c----~~~~nHaVliVGYg~~~g~~YWIikN 113 (244)
+.++|.+.|+.| |+++-+++. .+.-. +.-.... .| ....+|-|+|+||+.+.+ -+++||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 466778888774 777777764 12100 2222211 11 124589999999997633 344554
No 32
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=63.59 E-value=2.7 Score=23.81 Aligned_cols=10 Identities=60% Similarity=1.693 Sum_probs=6.2
Q ss_pred ccc-cCCCcee
Q 026075 198 GCC-PLEAATC 207 (244)
Q Consensus 198 ~cc-p~~~avc 207 (244)
||| |+|||.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 566 8999988
No 33
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=59.59 E-value=6 Score=25.29 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=15.2
Q ss_pred CCCCCCCCceecCCCCccc
Q 026075 167 KPPAVCDNYYSCPESNTCC 185 (244)
Q Consensus 167 ~~~~~C~~~~~c~~~~tCc 185 (244)
..++.|+....||.+.+|=
T Consensus 14 ~~~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 14 GQPVSCSPDNSCPSGYSCH 32 (45)
T ss_pred CCeeECcCCCCCCCcCEee
Confidence 3567898878899999984
No 34
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=56.66 E-value=55 Score=27.64 Aligned_cols=30 Identities=33% Similarity=0.751 Sum_probs=19.7
Q ss_pred CeeEEEEEeeccCCeeEEEEEcCCCCCCCCCceEE
Q 026075 92 DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIR 126 (244)
Q Consensus 92 nHaVliVGYg~~~g~~YWIikNSWG~~WGe~GY~r 126 (244)
.||.+|=||..+ .|+-+-=.||-. .+||++
T Consensus 163 GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 163 GHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp EEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred CeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 799999999643 576555455433 568875
No 35
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=54.09 E-value=31 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=27.0
Q ss_pred hHHHHHHHHHc-CCeEEEEecccccceeccCceEeccCCCCCCeeEEEEEeecc
Q 026075 51 DEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE 103 (244)
Q Consensus 51 ~~~~l~~~l~~-GPV~v~i~a~~~~f~~Y~sGIy~~~c~~~~nHaVliVGYg~~ 103 (244)
+.+.++++|.+ |||-+++.+...+ ...|+++|+|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~~---------------~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGDS---------------WVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCCc---------------ceeeEEEEEeecCC
Confidence 46788888875 9999986653211 23599999988754
No 36
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=30.75 E-value=91 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=21.7
Q ss_pred CeeEEEEEeeccCCee--EEEEEcCCCC
Q 026075 92 DHGVTAVGYGTENGAD--YWIVKNSWGS 117 (244)
Q Consensus 92 nHaVliVGYg~~~g~~--YWIikNSWG~ 117 (244)
+||=.|++..+.++.+ -..|||-||.
T Consensus 228 ~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 228 GHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred CccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 8999999998765555 8999999983
No 37
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=29.15 E-value=33 Score=20.70 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=16.2
Q ss_pred CCCCCCCCceecCCCCccccc
Q 026075 167 KPPAVCDNYYSCPESNTCCCV 187 (244)
Q Consensus 167 ~~~~~C~~~~~c~~~~tCc~~ 187 (244)
..++.|.....||.+.+|=..
T Consensus 11 ~~~~~C~~~~~CP~g~~C~~~ 31 (38)
T smart00289 11 GSPVRCSPNGSCPSGYSCQNS 31 (38)
T ss_pred CCCeECCCCCCCCCCCEEecC
Confidence 345688888999999998644
No 38
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.09 E-value=51 Score=31.88 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=4.5
Q ss_pred eEEEEEeec
Q 026075 94 GVTAVGYGT 102 (244)
Q Consensus 94 aVliVGYg~ 102 (244)
++-+.||=.
T Consensus 143 ~i~algWVa 151 (480)
T KOG2675|consen 143 SIPALGWVA 151 (480)
T ss_pred hcccceeEe
Confidence 344555543
No 39
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=23.28 E-value=1.1e+02 Score=21.03 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=27.2
Q ss_pred CCCceecCCCCcccccccC----CCccceecc---ccCCCceecCCCCCcCCCCC
Q 026075 172 CDNYYSCPESNTCCCVFEY----GNSCFAWGC---CPLEAATCCDDHYSCCPHDY 219 (244)
Q Consensus 172 C~~~~~c~~~~tCc~~~~~----~~~~~~~~c---cp~~~avcc~d~~hCcp~~~ 219 (244)
|.....||++++-|-...+ .+.-..||| ||-.+.- ....||..+.
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD~ 62 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTDK 62 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCCC
Confidence 4456679998888753311 223477888 7777543 3456666553
No 40
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=22.52 E-value=76 Score=28.32 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=19.5
Q ss_pred CCeeEEEEEeeccCC----eeEEEEEcCCCC
Q 026075 91 LDHGVTAVGYGTENG----ADYWIVKNSWGS 117 (244)
Q Consensus 91 ~nHaVliVGYg~~~g----~~YWIikNSWG~ 117 (244)
.+||-.|+++.+.++ ...-.|||-||.
T Consensus 213 ~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 213 PGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred cceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 389999999986533 567789999984
No 41
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=20.84 E-value=66 Score=18.20 Aligned_cols=18 Identities=28% Similarity=0.759 Sum_probs=13.7
Q ss_pred Cc-CCCCCCcccCCCCeeec
Q 026075 213 SC-CPHDYPICNVRAGTCLM 231 (244)
Q Consensus 213 hC-cp~~~~~c~~~~~~c~~ 231 (244)
+| ||.|| +=+....+|+-
T Consensus 3 ~C~C~~Gy-~l~~d~~~C~D 21 (24)
T PF12662_consen 3 TCSCPPGY-QLSPDGRSCED 21 (24)
T ss_pred EeeCCCCC-cCCCCCCcccc
Confidence 45 89999 77777788864
Done!