BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026076
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 314 bits (804), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 148/200 (74%), Positives = 172/200 (86%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 225 GFDQNISRFNMGQKYKYHAV 244
GF + RFN+ QKYK+H V
Sbjct: 193 GFSGSTERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/193 (74%), Positives = 167/193 (86%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 225 GFDQNISRFNMGQ 237
GF + RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 141/194 (72%), Positives = 165/194 (85%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
+EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNT Q K+L+G GSIGEVP+
Sbjct: 1 MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 224
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 180
Query: 225 GFDQNISRFNMGQK 238
GF + RFN+ QK
Sbjct: 181 GFSGSTERFNLVQK 194
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 2/180 (1%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A A +S A + G + ++LA
Sbjct: 4 PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
KP+ YMN SG VGPLA Y VP + I+VI+DE+ + G +RL+ GG G HNGL+SV +
Sbjct: 64 KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L G + F R+ IG+G PPG+ D A++L+ F+ ER ++ +EQ +A L+ G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLE 182
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A +S A + G ++LA
Sbjct: 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
KP+ YMN SG +GPLA Y V +I+VI+D++ L G +RL+ GG G HNGL+SV+
Sbjct: 64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++ EQ +A L+ G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A +S A + G ++LA
Sbjct: 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
KP+ YMN SG +GPLA Y V +I+VI+D++ L G +RL+ GG G HNGL+SV+
Sbjct: 64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++ EQ +A L+ G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 2/180 (1%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A A +S A + G + ++LA
Sbjct: 4 PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
KP+ MN SG VGPLA Y VP + I+VI+DE+ + G +RL+ GG G HNGL+SV +
Sbjct: 64 KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L G + F R+ IG+G PPG+ D A++L+ F+ ER ++ +EQ +A L+ G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLE 182
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN GF ++ +A I + N + + G G+I + L P
Sbjct: 6 LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
YMN SG+SV P + YQ+ IL+ +DE+ + GV+RL+ GGHG HNGL+ ++ H+
Sbjct: 66 MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
F RL IGIG+P K + ++L K E+ +D A++ + V+ LV Q
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 230 ISRFN 234
+++ N
Sbjct: 184 MNQIN 188
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 4/167 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
+I+GLGN G +Y TRHNVG I IAQ Q + N + L + SI ++L
Sbjct: 25 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
P YMN SG +V +A Y++ ILV++DE+ + +G +RL+ GGHG HNGL+S+ H
Sbjct: 84 PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 215
L G ++ RL IGIG+P K + Y+L S +++ ID+A++ G+
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG HNGLK +++
Sbjct: 62 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181
Query: 228 QNISRF 233
+ +R
Sbjct: 182 KATNRL 187
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 8 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG HNGLK +++
Sbjct: 66 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 185
Query: 228 QNISRF 233
+ +R
Sbjct: 186 KATNRL 191
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 25 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG HNGLK +++
Sbjct: 83 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 227
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 202
Query: 228 QNISRF 233
+ +R
Sbjct: 203 KATNRL 208
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 19/189 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
LIVGLGNPG +Y TRHN GF ++D +A R A T++ + + + L
Sbjct: 25 LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
+PQ YMN SG+SV LA +++ ILV +DE+ L G ++L+ GG G HNGLK +
Sbjct: 82 LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 167 NHLDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVE 216
HL +++ RL IGIG+P K D+ ++L+ E++ IDAA+E+ +
Sbjct: 142 AHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL- 199
Query: 217 AVRTLVLNG 225
AV V+ G
Sbjct: 200 AVMPAVVKG 208
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN G ++ +A AQ +++ + L+G S + L P
Sbjct: 6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
YMN SG+SV LA +++ ILV +DE+ + GV +L+ GGHG HNGL+ ++ L
Sbjct: 66 TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 212
F RL +GIG+P + Y+L + E+E +D +++
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 168
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN G ++ +A AQ +++ + L+G S + L P
Sbjct: 12 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
YMN SG+SV LA +++ ILV +DE+ + GV +L+ GGHG HNGL+ ++ L
Sbjct: 72 TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 212
F RL +GIG+P + Y+L + E+E +D +++
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 174
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 137 IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDM 191
I ++ + G+L H N ++ + L G R PR+ IG + G D+
Sbjct: 31 ILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDSIGGSSDL 85
>pdb|1QD6|C Chain C, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1QD6|D Chain D, Outer Membrane Phospholipase A From Escherichia Coli
Length = 240
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 129 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 188
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 189 TGYGGAELGL 198
>pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW3|B Chain B, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW2|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 4.6
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 6.1
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 8.3
Length = 275
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 102 VPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM-----SLMNGVLRLQPKGGH 156
V L+ P Y+ F G L + H +++ DE+ + N +L++ G
Sbjct: 530 VSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTL 586
Query: 157 GHHNGLKS-------VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 208
+NG K+ VM G RE R IG+ + D + + F+P R ++D
Sbjct: 587 TDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 12 ISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEY 47
I+ P PPF + +++ R V SL +NG F++++
Sbjct: 118 INSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDF 153
>pdb|3LAZ|A Chain A, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
pdb|3LAZ|B Chain B, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
Length = 99
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 43 FKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALI 94
KV T + + + + G+K GTR G E+I+HI Q ++A+ I + I
Sbjct: 19 IKVHDTDNVAIIVNDNGLKA-GTRFPDGLELIEHIPQGHKVALLDIPANGEI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,927,028
Number of Sequences: 62578
Number of extensions: 339855
Number of successful extensions: 734
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 24
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)