Query 026076
Match_columns 244
No_of_seqs 129 out of 1102
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02406 CRS2 Chloroplast RNA s 100.0 1.7E-74 3.6E-79 500.6 22.2 190 49-238 2-191 (191)
2 COG0193 Pth Peptidyl-tRNA hydr 100.0 2.2E-74 4.9E-79 497.4 20.5 188 48-236 1-189 (190)
3 TIGR00447 pth peptidyl-tRNA hy 100.0 4.2E-72 9.1E-77 484.6 22.2 186 49-235 1-188 (188)
4 PRK05426 peptidyl-tRNA hydrola 100.0 3.9E-71 8.5E-76 478.8 22.4 187 48-236 1-188 (189)
5 PF01195 Pept_tRNA_hydro: Pept 100.0 2.3E-70 5.1E-75 471.5 18.4 183 51-234 1-184 (184)
6 cd00462 PTH Peptidyl-tRNA hydr 100.0 2.9E-69 6.3E-74 460.8 19.5 171 51-222 1-171 (171)
7 KOG2255 Peptidyl-tRNA hydrolas 100.0 1.2E-62 2.6E-67 425.3 17.8 223 1-237 1-224 (224)
8 PRK11544 hycI hydrogenase 3 ma 92.8 3.1 6.7E-05 34.9 12.0 135 49-225 2-146 (156)
9 COG0680 HyaD Ni,Fe-hydrogenase 89.3 11 0.00025 32.0 12.3 140 48-221 2-154 (160)
10 TIGR00130 frhD coenzyme F420-r 86.4 18 0.00038 30.1 13.0 105 49-183 4-119 (153)
11 cd06070 H2MP_like-2 Putative [ 82.7 25 0.00053 28.7 11.9 84 51-169 1-96 (140)
12 TIGR00142 hycI hydrogenase mat 80.9 30 0.00064 28.4 13.9 134 50-223 1-143 (146)
13 cd06064 H2MP_F420-Reduc Endope 77.0 40 0.00087 27.7 11.7 92 51-170 1-105 (150)
14 cd06062 H2MP_MemB-H2up Endopep 70.1 59 0.0013 26.6 13.5 128 50-213 1-141 (146)
15 PF11775 CobT_C: Cobalamin bio 69.8 11 0.00023 34.2 5.4 90 113-209 115-207 (219)
16 PRK12362 germination protease; 67.0 77 0.0017 30.2 10.7 164 48-230 99-312 (318)
17 PRK10466 hybD hydrogenase 2 ma 65.3 8.8 0.00019 32.3 3.8 136 48-223 1-150 (164)
18 PF06154 YagB_YeeU_YfjZ: YagB/ 52.8 25 0.00054 28.2 4.1 31 195-225 35-65 (103)
19 PRK10264 hydrogenase 1 maturat 49.3 1.8E+02 0.0039 25.4 15.6 137 48-221 4-156 (195)
20 TIGR01651 CobT cobaltochelatas 48.3 35 0.00076 35.1 5.4 88 114-208 496-586 (600)
21 TIGR00072 hydrog_prot hydrogen 45.3 21 0.00045 29.2 2.8 103 51-183 1-116 (145)
22 KOG2380 Prephenate dehydrogena 43.5 1.6 3.6E-05 42.3 -4.5 48 37-85 43-97 (480)
23 PF11458 Mistic: Membrane-inte 42.2 50 0.0011 25.4 4.1 25 198-222 2-26 (84)
24 PF03418 Peptidase_A25: Germin 35.5 31 0.00067 33.3 2.6 27 49-79 97-123 (354)
25 cd06067 H2MP_MemB-H2evol Endop 34.9 37 0.00079 27.5 2.7 90 51-170 1-98 (136)
26 cd00518 H2MP Hydrogenase speci 34.8 39 0.00085 27.3 2.9 89 51-170 1-99 (139)
27 cd06063 H2MP_Cyano-H2up This g 34.3 44 0.00096 27.4 3.1 87 51-168 2-99 (146)
28 cd06068 H2MP_like-1 Putative [ 34.2 35 0.00075 27.9 2.5 26 51-80 1-26 (144)
29 cd06066 H2MP_NAD-link-bidir En 32.3 47 0.001 27.0 2.9 27 51-81 1-27 (139)
30 PRK10870 transcriptional repre 30.3 48 0.001 28.1 2.8 39 192-230 136-175 (176)
31 COG4547 CobT Cobalamin biosynt 29.8 79 0.0017 32.1 4.5 71 113-185 516-589 (620)
32 PF12896 Apc4: Anaphase-promot 27.2 78 0.0017 27.1 3.6 49 183-233 85-133 (210)
33 TIGR01441 GPR GPR endopeptidas 26.6 28 0.0006 33.7 0.7 27 48-78 101-127 (358)
34 PRK02858 germination protease; 26.2 29 0.00062 33.7 0.8 27 48-78 111-137 (369)
35 PF08282 Hydrolase_3: haloacid 25.1 63 0.0014 26.9 2.6 26 117-142 188-213 (254)
36 COG2607 Predicted ATPase (AAA+ 24.0 49 0.0011 30.9 1.8 32 120-151 127-158 (287)
37 PRK09256 hypothetical protein; 23.1 37 0.0008 28.4 0.8 26 135-160 2-29 (138)
38 KOG2882 p-Nitrophenyl phosphat 22.8 72 0.0016 30.3 2.7 40 100-145 216-255 (306)
39 KOG1486 GTP-binding protein DR 22.6 3.4E+02 0.0074 25.9 7.0 71 64-136 149-219 (364)
40 cd07018 S49_SppA_67K_type Sign 22.4 3E+02 0.0066 23.9 6.5 64 154-223 114-177 (222)
41 PF02318 FYVE_2: FYVE-type zin 22.0 1.7E+02 0.0036 23.3 4.3 20 197-216 1-20 (118)
42 TIGR00706 SppA_dom signal pept 21.9 3.8E+02 0.0083 23.0 6.9 59 157-223 101-159 (207)
43 PF13873 Myb_DNA-bind_5: Myb/S 21.0 2.1E+02 0.0044 20.5 4.3 40 197-236 3-51 (78)
44 TIGR00161 conserved hypothetic 21.0 1.2E+02 0.0026 27.1 3.7 28 49-84 17-44 (238)
45 PF06466 PCAF_N: PCAF (P300/CB 20.5 64 0.0014 29.8 1.8 56 182-237 136-199 (252)
46 cd00736 bacteriophage_lambda_l 20.1 1.6E+02 0.0034 25.1 4.0 42 194-235 81-122 (151)
No 1
>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).
Probab=100.00 E-value=1.7e-74 Score=500.61 Aligned_cols=190 Identities=78% Similarity=1.266 Sum_probs=182.1
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 128 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 128 (244)
+||||||||||++|++|||||||+++|.||+++++++++.++++.++++.+++++++|+||+||||+||++|++++++|+
T Consensus 2 ~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yk 81 (191)
T cd02406 2 PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK 81 (191)
T ss_pred cEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhC
Confidence 58999999999999999999999999999999998876667788899999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHH
Q 026076 129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 208 (244)
Q Consensus 129 i~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~ 208 (244)
++++++||||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||+...++++|||++|+++|++.|+
T Consensus 82 i~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~ 161 (191)
T cd02406 82 VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQID 161 (191)
T ss_pred CCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999657899999999999987678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026076 209 AALEQGVEAVRTLVLNGFDQNISRFNMGQK 238 (244)
Q Consensus 209 ~~i~~a~~al~~~i~~g~~~~mn~~N~~~~ 238 (244)
++++.|+++++.|+.++++++||+||+.||
T Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~n~~n~~~~ 191 (191)
T cd02406 162 TALEQGVDAVRTLVLKGFNGSAERFNLVQK 191 (191)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 999999999999999999999999998775
No 2
>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-74 Score=497.43 Aligned_cols=188 Identities=43% Similarity=0.719 Sum_probs=181.2
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~-~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 126 (244)
+++|||||||||++|+.|||||||+++|.||+++++++ ...++.+.++++.+++++|+|+||+||||+||++|.++++|
T Consensus 1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f 80 (190)
T COG0193 1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF 80 (190)
T ss_pred CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence 46899999999999999999999999999999999998 45678899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076 127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 206 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~ 206 (244)
|++.++++||||||||+|+|++|+|.+||++||||||||+++| ||++|+|||||||||..++++++|||++|+++|++.
T Consensus 81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~ 159 (190)
T COG0193 81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL 159 (190)
T ss_pred hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 589999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076 207 IDAALEQGVEAVRTLVLNGFDQNISRFNMG 236 (244)
Q Consensus 207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~ 236 (244)
|+++++.|+++++.++..+++++||+||+.
T Consensus 160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~ 189 (190)
T COG0193 160 LDKAIDKAADALELLLEGDFEKAMNKLNAL 189 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 999999999999999999999999999975
No 3
>TIGR00447 pth peptidyl-tRNA hydrolase. The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.
Probab=100.00 E-value=4.2e-72 Score=484.57 Aligned_cols=186 Identities=42% Similarity=0.688 Sum_probs=177.4
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
+||||||||||++|++|||||||+++|.||++++.++.+ .++++.++++.+++.+++|+||+||||+||++|++++++|
T Consensus 1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~ 80 (188)
T TIGR00447 1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY 80 (188)
T ss_pred CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence 489999999999999999999999999999999988763 4566888888899999999999999999999999999999
Q ss_pred CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 207 (244)
Q Consensus 128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l 207 (244)
+++++++||||||||+|+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l 159 (188)
T TIGR00447 81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL 159 (188)
T ss_pred CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 5899999999999998777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC-HHHHHHhhhC
Q 026076 208 DAALEQGVEAVRTLVLNG-FDQNISRFNM 235 (244)
Q Consensus 208 ~~~i~~a~~al~~~i~~g-~~~~mn~~N~ 235 (244)
+++++.++++++.|+.++ ++++||+||+
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~ 188 (188)
T TIGR00447 160 EKALDKAVEALEMSFSEGAFLKAMNRFNS 188 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence 999999999999999999 9999999995
No 4
>PRK05426 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=3.9e-71 Score=478.81 Aligned_cols=187 Identities=44% Similarity=0.753 Sum_probs=177.2
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 126 (244)
++||||||||||++|++|||||||+++|.||++++..+. ..++++.++++.+++.+++|+||+||||+||++|++++++
T Consensus 1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~ 80 (189)
T PRK05426 1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF 80 (189)
T ss_pred CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence 369999999999999999999999999999999887664 3456788999999989999999999999999999999999
Q ss_pred cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076 127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 206 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~ 206 (244)
|++++++++|||||||+|+|++|+|++||++||||||||+++| ++++|+|||||||||+ ..++++|||++|+++|++.
T Consensus 81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~ 158 (189)
T PRK05426 81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL 158 (189)
T ss_pred hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 5789999999999997 5679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076 207 IDAALEQGVEAVRTLVLNGFDQNISRFNMG 236 (244)
Q Consensus 207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~ 236 (244)
|++++++|+++++.|+.++++++||+||+.
T Consensus 159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~ 188 (189)
T PRK05426 159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 999999999999999999999999999964
No 5
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=100.00 E-value=2.3e-70 Score=471.48 Aligned_cols=183 Identities=48% Similarity=0.840 Sum_probs=163.3
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccc-cceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV 129 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~-~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki 129 (244)
|||||||||++|++|||||||+++|.||++++.+|.+.+ +++.++.+.+.+.+++|+||+||||+||++|++++++|++
T Consensus 1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i 80 (184)
T PF01195_consen 1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI 80 (184)
T ss_dssp EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence 799999999999999999999999999999999886654 6788888899999999999999999999999999999999
Q ss_pred CCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHH
Q 026076 130 PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 209 (244)
Q Consensus 130 ~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~ 209 (244)
+++++||||||+|+|+|++|+|++||++||||||||+++| +|++|+|||||||||+...++++|||++|+++|++.|++
T Consensus 81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~ 159 (184)
T PF01195_consen 81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK 159 (184)
T ss_dssp -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 589999999999999987899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHhhh
Q 026076 210 ALEQGVEAVRTLVLNGFDQNISRFN 234 (244)
Q Consensus 210 ~i~~a~~al~~~i~~g~~~~mn~~N 234 (244)
++++|+++++.|++++++++||+||
T Consensus 160 ~~~~a~~~l~~~i~~~~~~~mn~~n 184 (184)
T PF01195_consen 160 VIPQAAEALEQIIEGGFEKAMNKFN 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence 9999999999999999999999998
No 6
>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.
Probab=100.00 E-value=2.9e-69 Score=460.79 Aligned_cols=171 Identities=51% Similarity=0.893 Sum_probs=164.2
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
|||||||||++|++|||||||+++|.||++++.+|++.++++.++++.+++.+++|+||+||||+||++|++++++|+++
T Consensus 1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~ 80 (171)
T cd00462 1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP 80 (171)
T ss_pred CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence 69999999999999999999999999999999988776678999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHH
Q 026076 131 LRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAA 210 (244)
Q Consensus 131 ~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~ 210 (244)
++++||||||||+|+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++
T Consensus 81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~ 159 (171)
T cd00462 81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA 159 (171)
T ss_pred hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5899999999999998878999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026076 211 LEQGVEAVRTLV 222 (244)
Q Consensus 211 i~~a~~al~~~i 222 (244)
+++|+++++.++
T Consensus 160 ~~~~~~~~~~~~ 171 (171)
T cd00462 160 IEKAADALEDIL 171 (171)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 7
>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-62 Score=425.32 Aligned_cols=223 Identities=57% Similarity=0.926 Sum_probs=199.4
Q ss_pred CccccCCCcccccCCCCCCCCCCccccceeEEeecc-CCCCCCcccccCCeEEEeecCCCCCCCcCcchHHHHHHHHHHH
Q 026076 1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASL-PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~ 79 (244)
|+|++++|...-.-|+..-++ +.||+++|++ |...+. ||+|+||||||++|.+|||||||.|+|.||+
T Consensus 1 m~~~~~~~~~~~~~p~~~i~~-----~qr~~~~c~l~~~~~~k------~wli~GLGNPg~~y~gTRHnvG~~Ml~~lar 69 (224)
T KOG2255|consen 1 MTCGGGVPMAYKFLPKKLIAR-----KQRFSVHCDLKPRVSIK------PWLIVGLGNPGSKYVGTRHNVGFEMLDMLAR 69 (224)
T ss_pred CcCCCCCcceeeecccccccc-----ccchheeeecccCCCCC------ceEEEecCCCcccccccchhhHHHHHHHHHH
Confidence 899999988776666654433 5566645544 543332 8999999999999999999999999999999
Q ss_pred HcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCC
Q 026076 80 AQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHH 159 (244)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GH 159 (244)
+++++.++.+.++..+.+.+++.++++++|++|||.||++|.+++..|+++.++++||||||++|+|+++++++||++||
T Consensus 70 rlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgH 149 (224)
T KOG2255|consen 70 RLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDELELPLGKLRLRPGGSHRGH 149 (224)
T ss_pred HhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccccCcCceEEeccCCCcccc
Confidence 99998887777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 160 NGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 160 NGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
||+||++++++++..|+||+||||||++++|+.+|||++|++.|++ +.+++..+..+.++.++++.-+++||..|
T Consensus 150 NGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~k---e~Let~l~~~~~lil~~l~~~is~~~lg~ 224 (224)
T KOG2255|consen 150 NGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQK---ELLETLLEHVKTLILQGLQQSISRFNLGQ 224 (224)
T ss_pred ccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhH---HHHHHHHhhhHHHHHHHHHHhcccCcCCC
Confidence 9999999999888899999999999999999999999999999998 45677777888888889999999999864
No 8
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=92.76 E-value=3.1 Score=34.87 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=72.8
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 128 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 128 (244)
..||+|+|||-.. ===+|..++++|++.. +. . +.++.-.| .|.-+-.++..+
T Consensus 2 ~~lVlGiGN~L~g----DDGvG~~v~~~L~~~~---~~----~------------v~vid~gt----~~~~~~~~i~~~- 53 (156)
T PRK11544 2 TDVVLTVGNSMMG----DDGAGPLLAEKLAAAP---KG----G------------WVVIDGGS----APENDIVAIREL- 53 (156)
T ss_pred cEEEEEeCccccc----cCcHHHHHHHHHhccC---CC----C------------eEEEECCC----CHHHHHHHHHhc-
Confidence 4699999999633 2349999999997642 10 0 11111111 122221122211
Q ss_pred CCCCcEEEEee--ccCCCCceEEEccC-------CCCCCCCchHHHHHhhcCCCCccEEEE-ccCCCCCccccccccccC
Q 026076 129 VPLRHILVIYD--EMSLMNGVLRLQPK-------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQK 198 (244)
Q Consensus 129 i~~~~ilVIhD--Dldl~~G~vrlk~~-------Gs~~GHNGLkSI~~~L~gt~~f~RLrI-GIGrP~~~~~~~~yVLs~ 198 (244)
.+ +.+||-| +.+.++|.++.-.. ..+.+.-||..++..+.+ ..+++.| ||= |. ++ +| =..
T Consensus 54 -~~-d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~ 123 (156)
T PRK11544 54 -RP-ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYP 123 (156)
T ss_pred -CC-CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCC
Confidence 23 5556666 45678999887321 124455589999988853 3455544 443 32 22 22 235
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026076 199 FSPIEREQIDAALEQGVEAVRTLVLNG 225 (244)
Q Consensus 199 Fs~~E~~~l~~~i~~a~~al~~~i~~g 225 (244)
+|++ +.+.++++++.++.|...+
T Consensus 124 LS~~----v~~av~~~~~~l~~~~~~~ 146 (156)
T PRK11544 124 MTQP----VKDAVETVYQRLEGWEGNG 146 (156)
T ss_pred CCHH----HHHHHHHHHHHHHHhhccC
Confidence 5555 4445566777777776544
No 9
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=89.31 E-value=11 Score=31.99 Aligned_cols=140 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeC-CchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP-QAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP-~TyMN~SG~aV~~~~~~ 126 (244)
++.+|+|+|||=. .===+|-.+++.|++.+.-.- .+-++.- +--+|+.+.
T Consensus 2 ~~ilIlG~GN~L~----~DDG~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~~-------- 52 (160)
T COG0680 2 MRILILGVGNILM----GDDGFGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLGL-------- 52 (160)
T ss_pred CeEEEEeeCCccc----ccCcccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHHH--------
Confidence 4689999999853 334689999999998764211 0111111 222333332
Q ss_pred cCCCCCcEEEEeeccCC--CCceEEEccC------CCC----CCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccc
Q 026076 127 YQVPLRHILVIYDEMSL--MNGVLRLQPK------GGH----GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAY 194 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl--~~G~vrlk~~------Gs~----~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~y 194 (244)
+...+-++|-|=++. ..|.+++-+. ..+ .+--++..++..+.-..++...-+|+.-++. ...+
T Consensus 53 --l~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~- 127 (160)
T COG0680 53 --LAGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE- 127 (160)
T ss_pred --hcCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc-
Confidence 222334888886555 4999987432 233 3455788888888544556788888885542 1111
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHH
Q 026076 195 LLQKFSPIEREQIDAALEQGVEAVRTL 221 (244)
Q Consensus 195 VLs~Fs~~E~~~l~~~i~~a~~al~~~ 221 (244)
+...+|++=++.++.+++++.+.++.+
T Consensus 128 ~~~~lS~ev~~a~~~av~~i~~~l~~~ 154 (160)
T COG0680 128 FGGGLSPEVEEAVDKAVERILEELREW 154 (160)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhh
Confidence 335667776666666666666555443
No 10
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=86.41 E-value=18 Score=30.06 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=58.4
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHH-cCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~-~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
+.+|+|+|||-.. ===+|..++++|++. +..+ . .+.++.-.| .| ...+....
T Consensus 4 ~ilVlGiGN~l~g----DDGvG~~v~~~L~~~~~~~~--~---------------~v~vid~gt----~~--~~~l~~~~ 56 (153)
T TIGR00130 4 EILVVGCGNILFG----DDGFGPAVIEYLKENGVEKP--D---------------NVCLIDAGT----GA--PHFVFTLI 56 (153)
T ss_pred eEEEEEeCccccc----cCcHhHHHHHHHHHhCCCCC--C---------------CeEEEECCC----cH--HHHHHHHh
Confidence 4689999998532 234999999999863 2211 0 011111000 01 11111111
Q ss_pred CCCCCcEEEEeec--cCCCCceEEEccC-----C-C-CCCCCchHHHHHhhcCCCCccEEEE-ccC
Q 026076 128 QVPLRHILVIYDE--MSLMNGVLRLQPK-----G-G-HGHHNGLKSVMNHLDGCREFPRLCI-GIG 183 (244)
Q Consensus 128 ki~~~~ilVIhDD--ldl~~G~vrlk~~-----G-s-~~GHNGLkSI~~~L~gt~~f~RLrI-GIG 183 (244)
.+.--+.+||-|= .+.++|.++.... + . +.++-|+..+++.+.. . .++.| ||-
T Consensus 57 ~~~~~d~vIivDA~~~~~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~-~--~~~~iiGi~ 119 (153)
T TIGR00130 57 PQSKWKKIIVVDIADFGAEPGTLRVLNVDELPNGRYMDAHGWSLAYPLHDLEE-R--IDIRVVGCQ 119 (153)
T ss_pred hhcCCCEEEEEEccCCCcCCCEEEEEchHHcCCCCCCCCccCCHHHHHHHhcC-C--CCEEEEEEE
Confidence 2333456777774 5789999887321 2 2 5666799999988842 2 55555 553
No 11
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=82.66 E-value=25 Score=28.69 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=48.9
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
||+|+|||-.. ===+|+.+++.|++ .++ -++.-.| .| -.++..+ .
T Consensus 1 lVlGiGN~l~~----DDg~G~~v~~~L~~-~~v---------------------~vi~~g~----~~---~~ll~~i--~ 45 (140)
T cd06070 1 LIIGVGNRLYG----DDGFGSCLAEALEQ-CGA---------------------PVFDGGL----DG---FGLLSHL--E 45 (140)
T ss_pred CEEEECchhcc----cCcHHHHHHHHHhh-CCC---------------------EEEECCC----cH---HHHHHHH--c
Confidence 69999998632 23499999999986 111 1111111 12 2334433 2
Q ss_pred CCcEEEEeeccC--CCCceEEEccC---------CC-CCCCCchHHHHHhh
Q 026076 131 LRHILVIYDEMS--LMNGVLRLQPK---------GG-HGHHNGLKSVMNHL 169 (244)
Q Consensus 131 ~~~ilVIhDDld--l~~G~vrlk~~---------Gs-~~GHNGLkSI~~~L 169 (244)
..+.+||.|=++ .+.|.+++... .+ +.++-|+..+++-+
T Consensus 46 ~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~ 96 (140)
T cd06070 46 NYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL 96 (140)
T ss_pred CCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence 345566666544 58898887542 12 34445999997776
No 12
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=80.88 E-value=30 Score=28.42 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=70.8
Q ss_pred eEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 026076 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV 129 (244)
Q Consensus 50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki 129 (244)
.||+|+|||-.. ===+|..++++|++.+.- . .+.++.-.| .|.-.-.++..+
T Consensus 1 ~lVlGiGN~l~~----DDG~G~~v~~~L~~~~~~---~---------------~v~v~d~gt----~~~~~~~~~~~~-- 52 (146)
T TIGR00142 1 LVLLCVGNELMG----DDGAGPYLAEKCAAAPKE---E---------------NWVVINAGT----VPENFTVAIREL-- 52 (146)
T ss_pred CEEEEeCccccc----cCcHHHHHHHHHHhccCC---C---------------CEEEEECCC----ChHHHHHHHHhc--
Confidence 479999999633 234999999999865321 0 011222222 122111222221
Q ss_pred CCCcEEEEeecc--CCCCceEEEccC------CCCCCCCchHHHHHhhcCCCCccEEEE-ccCCCCCccccccccccCCC
Q 026076 130 PLRHILVIYDEM--SLMNGVLRLQPK------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKFS 200 (244)
Q Consensus 130 ~~~~ilVIhDDl--dl~~G~vrlk~~------Gs~~GHNGLkSI~~~L~gt~~f~RLrI-GIGrP~~~~~~~~yVLs~Fs 200 (244)
.+ +.++|-|-. +.++|.++.... ..+.+..|+..+++.+.+ .--.++.| ||- |. ++ +|- ...|
T Consensus 53 ~~-d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS 124 (146)
T TIGR00142 53 RP-THILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMS 124 (146)
T ss_pred CC-CEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCC
Confidence 22 556666754 568999887331 124445599999888742 22245555 553 32 22 333 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026076 201 PIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 201 ~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
++=+ +.++++++.+..++.
T Consensus 125 ~~v~----~a~~~~~~~i~~~i~ 143 (146)
T TIGR00142 125 QPVK----DAVETLYQRLIGWEG 143 (146)
T ss_pred HHHH----HHHHHHHHHHHHHHh
Confidence 6544 444555555555443
No 13
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=76.98 E-value=40 Score=27.72 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=53.9
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHH-HHHcC-
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPL-AAHYQ- 128 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~-~~~~k- 128 (244)
||+|+|||-.. ===+|+.++++|++..... . .+.++. .|...-.+ ..+..
T Consensus 1 lViGiGN~l~g----DDgvG~~va~~l~~~~~~~--~---------------~v~vid-------~g~~~~~~~~~~~~~ 52 (150)
T cd06064 1 LVVGCGNILFG----DDGFGPAVIEELEKLELLP--D---------------NVQVID-------AGTGAPHLLFTLLDE 52 (150)
T ss_pred CEEEECCcccc----cCcHHHHHHHHHHhccCCC--C---------------CEEEEE-------CCCcHHHHHHHHHhc
Confidence 68999998632 2349999999998764210 0 011222 22211111 11111
Q ss_pred CCCCcEEEEeecc--CCCCceEEEccC---------CCCCCCCchHHHHHhhc
Q 026076 129 VPLRHILVIYDEM--SLMNGVLRLQPK---------GGHGHHNGLKSVMNHLD 170 (244)
Q Consensus 129 i~~~~ilVIhDDl--dl~~G~vrlk~~---------Gs~~GHNGLkSI~~~L~ 170 (244)
..-.+.+||-|=+ +.+.|.++.... ..+.++-|+..+++.+.
T Consensus 53 ~~~~d~viivDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~ 105 (150)
T cd06064 53 ESKPKKIIIVDAIDFGLEPGTLKKISVDELPPGKYYDFDAHSWPLADPLHELK 105 (150)
T ss_pred cCCCCEEEEEEecCCCCCCCeEEEEehhhcccccCCCcCCCcCCHHHHHHHHH
Confidence 1224667777874 778999877322 13568899999998874
No 14
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=70.12 E-value=59 Score=26.58 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=67.5
Q ss_pred eEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 026076 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV 129 (244)
Q Consensus 50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki 129 (244)
.+|+|+|||-.. ===+|..+++.|++.++.... +.++. .|.....++..+.
T Consensus 1 ilV~GiGN~l~g----DDG~G~~va~~L~~~~~~~~~-----------------v~vi~-------~~~~~~~l~~~l~- 51 (146)
T cd06062 1 ILVLGIGNILLA----DEGIGVHAVERLEENYSFPEN-----------------VELID-------GGTLGLELLPYIE- 51 (146)
T ss_pred CEEEEECccccc----cCcHHHHHHHHHHHhcCCCCC-----------------eEEEE-------CCCCHHHHHHHHh-
Confidence 379999999532 234999999999887542211 11111 0111122233221
Q ss_pred CCCcEEEEeec--cCCCCceEEEcc-C--------CCCCCCCchHHHHHhhcCC-CCccEEEE-ccCCCCCccccccccc
Q 026076 130 PLRHILVIYDE--MSLMNGVLRLQP-K--------GGHGHHNGLKSVMNHLDGC-REFPRLCI-GIGNPPGKMDMKAYLL 196 (244)
Q Consensus 130 ~~~~ilVIhDD--ldl~~G~vrlk~-~--------Gs~~GHNGLkSI~~~L~gt-~~f~RLrI-GIGrP~~~~~~~~yVL 196 (244)
-.+.+||-|= .+.++|.++... . ..+.++-|+..+++.+... ..-+++.| ||= | . ++ +| =
T Consensus 52 -~~d~viiVDA~~~g~~pG~i~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~~~~~~~v~ivgie-~-~--~~-~~-g 124 (146)
T cd06062 52 -EADRLIIVDAVDAGGPPGTVYRFEGEDVPAFLSAKLSAHQVGLLEVLALAELLGDLPPEIVLIGVQ-P-E--SI-EW-G 124 (146)
T ss_pred -cCCEEEEEEcccCCCCCCeEEEEechhccccccCCcCcccCCHHHHHHHHHHcCCCCCeEEEEEEE-E-e--ec-cC-C
Confidence 2366777776 467899987632 1 2356777888888775211 11234444 443 2 1 12 12 2
Q ss_pred cCCCHHHHHHHHHHHHH
Q 026076 197 QKFSPIEREQIDAALEQ 213 (244)
Q Consensus 197 s~Fs~~E~~~l~~~i~~ 213 (244)
..+|++=++.++++++.
T Consensus 125 ~~LS~~v~~av~~~~~~ 141 (146)
T cd06062 125 LELSPEVAAALPTAIEA 141 (146)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 36666655555554443
No 15
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=69.83 E-value=11 Score=34.16 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=51.0
Q ss_pred hhccchhHHHHHHHcCCCCC--c-EEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCcc
Q 026076 113 MNFSGESVGPLAAHYQVPLR--H-ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKM 189 (244)
Q Consensus 113 MN~SG~aV~~~~~~~ki~~~--~-ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~ 189 (244)
=|..|+++..+++.+.-.++ + ++||.|= -|...--+...+++-=.+=||.+++......+.-=+.||||.
T Consensus 115 eniDGeAl~~a~~rL~~r~e~rkiLiViSDG--~P~d~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~----- 187 (219)
T PF11775_consen 115 ENIDGEALRWAAERLLARPEQRKILIVISDG--APADDSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH----- 187 (219)
T ss_pred cCCcHHHHHHHHHHHHcCCccceEEEEEeCC--CcCcccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC-----
Confidence 48999999988887654444 3 4666663 233222222222222234478888888433355568999985
Q ss_pred ccccccccCCCHHHHHHHHH
Q 026076 190 DMKAYLLQKFSPIEREQIDA 209 (244)
Q Consensus 190 ~~~~yVLs~Fs~~E~~~l~~ 209 (244)
|++.|=-....-...+.|..
T Consensus 188 D~~~yY~~~~~i~~~e~l~~ 207 (219)
T PF11775_consen 188 DVSRYYRRAVTIDDVEELGG 207 (219)
T ss_pred CchhhcccceecCCHHHHHH
Confidence 34445444444444455543
No 16
>PRK12362 germination protease; Provisional
Probab=66.99 E-value=77 Score=30.23 Aligned_cols=164 Identities=17% Similarity=0.320 Sum_probs=86.5
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcC-CCccccccceEEEEEEECCeeEEEEeC----CchhhccchhHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQR-IAMNTIQSKALIGIGSIGEVPILLAKP----QAYMNFSGESVGP 122 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~-~~~~~~~~~~~~~~~~~~~~~v~L~KP----~TyMN~SG~aV~~ 122 (244)
.+.|||||||.- -|--..|-.+++.|.-... ........ .-+-.+|.-+-| +|=||.+ +.++.
T Consensus 99 ~~iLVvGLGN~~----vTpDaLGP~Vv~~l~vTrhl~~~~~~~~-------~~~~~pV~AiaPGVmg~TGiet~-Eii~g 166 (318)
T PRK12362 99 MTVLVVGLGNWN----VTPDALGPKVVSKLMVTRHLKEYAPEEI-------DEGIRPVCAIAPGVLGITGIETA-EIIKG 166 (318)
T ss_pred CcEEEEEcCCCC----cCccccchhhhhhhhhhhhhhhhcCchh-------cCCCCcceEecCCcccccchhHH-HHHHH
Confidence 458999999964 5999999999999865422 11110000 011123444444 4555543 34455
Q ss_pred HHHHcCCCCCcEEEEeeccC----CCCc-eEEEccCC---CCCCCCchHHH-HHhhcCCCCccEEEEccCCCCCc----c
Q 026076 123 LAAHYQVPLRHILVIYDEMS----LMNG-VLRLQPKG---GHGHHNGLKSV-MNHLDGCREFPRLCIGIGNPPGK----M 189 (244)
Q Consensus 123 ~~~~~ki~~~~ilVIhDDld----l~~G-~vrlk~~G---s~~GHNGLkSI-~~~L~gt~~f~RLrIGIGrP~~~----~ 189 (244)
+..+++ | +++|.-|-+. --+| .|.+...| |+|=.|==+.| .+.| | .+=+.|||=-=-+- .
T Consensus 167 Iv~k~k--p-d~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~etL-G---VPVIAIGVPTVVdAatI~~ 239 (318)
T PRK12362 167 VVEKIK--P-DLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINEETL-G---VPVIAIGVPTVVDAATIAN 239 (318)
T ss_pred HHHhcC--C-CEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCHHHc-C---CCEEEEcCCeeechHHHHH
Confidence 555443 2 5667778776 2366 77776655 22212211222 1333 2 45566665321110 1
Q ss_pred ccccc-----------------cccCCCHHHHHHH-HHH--------------HHHHHHHHHHHHHhCHHHHH
Q 026076 190 DMKAY-----------------LLQKFSPIEREQI-DAA--------------LEQGVEAVRTLVLNGFDQNI 230 (244)
Q Consensus 190 ~~~~y-----------------VLs~Fs~~E~~~l-~~~--------------i~~a~~al~~~i~~g~~~~m 230 (244)
|.-++ +|..++++|+..+ .++ +|..++-+..++.+|++.+.
T Consensus 240 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ek~~li~evl~p~~~~l~VTPKeID~~i~~~s~iIa~giN~al 312 (318)
T PRK12362 240 DTIDLVLDELINQSEEGSEFYNMLKSLNQEEKQQLIKEVLSPYVGNLIVTPKEIDELIENLSKIIAGGINMAL 312 (318)
T ss_pred HHHHHHHHHHhhhcccccchhhhhhccCHHHHHHHHHHHhCccCCcceECcHhHHHHHHHHHHHHHHHHHHHh
Confidence 22233 4566788887655 333 45555666666677777664
No 17
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=65.29 E-value=8.8 Score=32.28 Aligned_cols=136 Identities=22% Similarity=0.340 Sum_probs=69.7
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
|+.+|+|+|||-. +===+|..++++|++.+..+.. +.++.- |...-.++..+
T Consensus 1 m~ilVlGiGN~l~----gDDGvG~~va~~L~~~~~~~~~-----------------v~vid~-------gt~~~~ll~~l 52 (164)
T PRK10466 1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY-----------------VEILDG-------GTAGMELLGDM 52 (164)
T ss_pred CceEEEEECchhh----ccCcHHHHHHHHHHHhcCCCCC-----------------eEEEec-------cccHHHHHHHH
Confidence 4579999999853 2234999999999876542110 111110 11112233332
Q ss_pred CCCCCcEEEEeecc--CCC-CceEEEccC---------CCCCCCCchHHHHHhhcCCCCcc-EEEE-ccCCCCCcccccc
Q 026076 128 QVPLRHILVIYDEM--SLM-NGVLRLQPK---------GGHGHHNGLKSVMNHLDGCREFP-RLCI-GIGNPPGKMDMKA 193 (244)
Q Consensus 128 ki~~~~ilVIhDDl--dl~-~G~vrlk~~---------Gs~~GHNGLkSI~~~L~gt~~f~-RLrI-GIGrP~~~~~~~~ 193 (244)
.-.+.+||-|=. +.+ +|.|+.-.. +-+.+.-|+..++..+.-....+ ++.| ||- |. . + +
T Consensus 53 --~~~d~vIiVDA~~~g~~~PG~v~~~~~~~~~~~~~~~~s~H~~~l~~~L~~~~~~g~~p~~v~lvgie-p~-~--~-~ 125 (164)
T PRK10466 53 --ANRDHLIIADAIVSKKNAPGTIMVLRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI-PE-S--L-E 125 (164)
T ss_pred --hCCCEEEEEEecCCCCCCCCEEEEEchhhccccccCCCCcccCCHHHHHHHHHHcCCCCCeEEEEEEE-Ee-e--c-c
Confidence 123557777765 434 898876321 11334457777776542112343 4444 665 32 1 1 2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026076 194 YLLQKFSPIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
| -..+|++ +++.++.+++.++.++.
T Consensus 126 ~-g~~LS~~----V~~av~~~~~~i~~~l~ 150 (164)
T PRK10466 126 P-HIGLTPT----VEAMIEPALEQVLAALR 150 (164)
T ss_pred C-CCCCCHH----HHHHHHHHHHHHHHHHH
Confidence 2 1255555 44455555555555443
No 18
>PF06154 YagB_YeeU_YfjZ: YagB/YeeU/YfjZ family; InterPro: IPR009320 This family of proteins includes three proteins from Escherichia coli proteins YagB, YeeU and YfjZ. The function of these proteins is unknown. They are about 120 amino acids in length.; PDB: 2H28_A 2INW_B 2JN7_A 2EA9_A.
Probab=52.82 E-value=25 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026076 195 LLQKFSPIEREQIDAALEQGVEAVRTLVLNG 225 (244)
Q Consensus 195 VLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g 225 (244)
+-+.|+++|...||++++..++-++.++..|
T Consensus 35 i~G~Fs~~~~~~Ld~aFP~~ikqlE~ml~sG 65 (103)
T PF06154_consen 35 ITGTFSEEEAQHLDQAFPLFIKQLELMLTSG 65 (103)
T ss_dssp EES---HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEEcCHHHHHHHHhHhHHHHHHHHHHHhcC
Confidence 5689999999999999999999888877644
No 19
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=49.29 E-value=1.8e+02 Score=25.40 Aligned_cols=137 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
++.+|+|+|||=. .===+|..++++|++.+..+.. +.++.-.| .|. .++.++
T Consensus 4 ~rilVlGiGN~L~----gDDGvG~~va~~L~~~~~~~~~-----------------V~vid~Gt----~g~---~ll~~i 55 (195)
T PRK10264 4 QRVVVMGLGNLLW----ADEGFGVRVAERLYAHYHWPEY-----------------VEIVDGGT----QGL---NLLGYV 55 (195)
T ss_pred CCEEEEEeCcccc----ccCcHHHHHHHHHHhhcCCCCC-----------------eEEEECCC----CHH---HHHHHH
Confidence 4579999999842 2224999999999876542210 11111101 111 233332
Q ss_pred CCCCCcEEEEeecc--CCCCceEEEccC----------CCCCCCCchHHHHHh--hcCCCCcc-EEE-EccCCCCCcccc
Q 026076 128 QVPLRHILVIYDEM--SLMNGVLRLQPK----------GGHGHHNGLKSVMNH--LDGCREFP-RLC-IGIGNPPGKMDM 191 (244)
Q Consensus 128 ki~~~~ilVIhDDl--dl~~G~vrlk~~----------Gs~~GHNGLkSI~~~--L~gt~~f~-RLr-IGIGrP~~~~~~ 191 (244)
. --+.+||-|=+ +.++|.++.-.. +-+-++-|+..++.. +.+ +.+ ++. |||= |.. +
T Consensus 56 ~--~~d~vIiVDAv~~g~~PGtv~~~~~~~~~~~~~~~~~S~H~~~l~~~L~l~~l~g--~~P~~v~iiGie-p~~---~ 127 (195)
T PRK10264 56 E--SASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALADIRG--HLPAHIALVGLQ-PAM---L 127 (195)
T ss_pred c--CCCEEEEEECCccCCCCCeEEEEehhhcccccccCCcCcccCCHHHHHHHHHHcC--CCCCeEEEEEEE-EeE---e
Confidence 2 23566666744 558998887321 113466799999763 322 343 455 4764 321 1
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTL 221 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~ 221 (244)
. ..=-.+|++=++.++++++.+.+.++.|
T Consensus 128 ~-~~g~~LSp~V~~av~~~v~~i~~~l~~~ 156 (195)
T PRK10264 128 D-DYGGSLSELAREQLPAAEQAALAQLAAW 156 (195)
T ss_pred c-CCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 1 1224677776677777666666655554
No 20
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=48.28 E-value=35 Score=35.13 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=53.3
Q ss_pred hccchhHHHHHHHcCCCCCc---EEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccc
Q 026076 114 NFSGESVGPLAAHYQVPLRH---ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMD 190 (244)
Q Consensus 114 N~SG~aV~~~~~~~ki~~~~---ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~ 190 (244)
|..|++|..++..+.-.++. +|||.|=-=.+-+. +.-..++-=++=||.+|+........-=+.||||..
T Consensus 496 N~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~T--lsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D----- 568 (600)
T TIGR01651 496 NIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDST--LSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD----- 568 (600)
T ss_pred CCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccc--cccCchhHHHHHHHHHHHHHhccCCceEEEeecccc-----
Confidence 88899999998877655553 56777743322222 222222223444999999994223566699999963
Q ss_pred cccccccCCCHHHHHHHH
Q 026076 191 MKAYLLQKFSPIEREQID 208 (244)
Q Consensus 191 ~~~yVLs~Fs~~E~~~l~ 208 (244)
|..|--..++-.+.+.|.
T Consensus 569 v~r~Y~~~v~i~~~~eL~ 586 (600)
T TIGR01651 569 VTRYYRRAVTIVDAEELA 586 (600)
T ss_pred HHHHccccceecCHHHHH
Confidence 555554444445555554
No 21
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=45.31 E-value=21 Score=29.19 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
||+|+|||-.. ===+|..++++|++...... . +-++.-.| .|. .++..+. .
T Consensus 1 lViGiGN~l~~----DDg~G~~v~~~L~~~~~~~~------~-----------v~~id~g~----~~~---~l~~~l~-~ 51 (145)
T TIGR00072 1 LVLGIGNILRG----DDGFGPRVAERLEERYEFPP------G-----------VEVLDGGT----LGL---ELLDAIE-G 51 (145)
T ss_pred CEEEECchhcc----cCcHHHHHHHHHHHhcCCCC------C-----------eEEEECCC----CHH---HHHHHHh-C
Confidence 69999999532 23599999999998753210 0 11111000 122 2333332 2
Q ss_pred CCcEEEEeecc--CCCCceEEEccC---------CCCCCCCchHHHHHhhcCCCCcc-EEEE-ccC
Q 026076 131 LRHILVIYDEM--SLMNGVLRLQPK---------GGHGHHNGLKSVMNHLDGCREFP-RLCI-GIG 183 (244)
Q Consensus 131 ~~~ilVIhDDl--dl~~G~vrlk~~---------Gs~~GHNGLkSI~~~L~gt~~f~-RLrI-GIG 183 (244)
-+.+||-|=. +.+.|.++.-.. ..+.++-|+..++..+.-....+ ++.+ ||=
T Consensus 52 -~d~viiVDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~g~~p~~~~lvgi~ 116 (145)
T TIGR00072 52 -ADRVIVVDAVDSGAEPGTVRRLPGEDLPAFLGGKLSTHQLGLSEVLALLELLGALPPEVVLLGIQ 116 (145)
T ss_pred -CCEEEEEEccCCCcCCceEEEEchhhccccccCCCCcCcCCHHHHHHHHHHcCCCCCeEEEEEEE
Confidence 3456666764 558999886321 22455669999888773222344 4444 543
No 22
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=43.54 E-value=1.6 Score=42.32 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCCCCcccccCCeEEEeecCCCCCCCcCcchHHHHHH-------HHHHHHcCCCc
Q 026076 37 PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMI-------DHIAQAQRIAM 85 (244)
Q Consensus 37 ~~~~~~~~~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vl-------d~La~~~~~~~ 85 (244)
|++....|. .-.+-|+|+||-|.-|+.|--.+||.++ +.+|+++|...
T Consensus 43 ~~s~~~~k~-tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ 97 (480)
T KOG2380|consen 43 EDSIEQWKA-TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAK 97 (480)
T ss_pred cchhhhccc-ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccc
Confidence 344444444 3335799999999999999999999876 56888888653
No 23
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=42.20 E-value=50 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 198 KFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 198 ~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
+.+.+|+++|-.+|++.-+.+..||
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD~fI 26 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLDTFI 26 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHH
Confidence 4678999999988888777555444
No 24
>PF03418 Peptidase_A25: Germination protease This family belongs to family A25 of the peptidase classification.; InterPro: IPR005080 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family A25 (gpr protease family, clan AE). These are tetrameric proteases that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species during spore germination. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0009847 spore germination; PDB: 1C8B_A.
Probab=35.53 E-value=31 Score=33.31 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=17.7
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHH
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ 79 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~ 79 (244)
..|||||||.- -|--..|-.+++.+.-
T Consensus 97 ~iLVVGLGN~~----vTPDALGP~vv~~l~V 123 (354)
T PF03418_consen 97 SILVVGLGNWN----VTPDALGPRVVENLLV 123 (354)
T ss_dssp -EEEEE-S-SS----SGGG-HHHHHHHT---
T ss_pred eEEEEeCCCcC----CCccccchhhhhhhhh
Confidence 47999999964 6999999999997643
No 25
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=34.87 E-value=37 Score=27.54 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=51.0
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
+|+|+|||-.. ===+|..++++|++.. .. + +-++.-.| .|..+-..+.. .
T Consensus 1 ~VlGiGN~L~~----DDgvG~~v~~~L~~~~---~~--------------~--v~vid~gt----~~~~~~~~l~~---~ 50 (136)
T cd06067 1 VLLGVGNELRG----DDGAGPLLAEKLEDLP---NP--------------N--WLVIDGGT----VPENFTGKIRE---E 50 (136)
T ss_pred CEEEeCccccc----cCcHHHHHHHHHHhcC---CC--------------C--EEEEECCC----CHHHHHHHHHh---c
Confidence 58999998632 2359999999998753 11 0 11111111 22221111211 1
Q ss_pred CCcEEEEeecc--CCCCceEEEccC----C--CCCCCCchHHHHHhhc
Q 026076 131 LRHILVIYDEM--SLMNGVLRLQPK----G--GHGHHNGLKSVMNHLD 170 (244)
Q Consensus 131 ~~~ilVIhDDl--dl~~G~vrlk~~----G--s~~GHNGLkSI~~~L~ 170 (244)
.-+.+||-|=. +.+.|+++.... . .+.++-|+..+.+.+.
T Consensus 51 ~~d~vIiVDAv~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~~L~~~~ 98 (136)
T cd06067 51 KPDLIVIVDAADMGLEPGEIRIIDPEEIAEYFFSTHTLPLSILIDYLR 98 (136)
T ss_pred CCCEEEEEECCccCcCCCEEEEEchhhcccccCCCCcCCHHHHHHHHH
Confidence 23556666765 458999887321 1 3456669999988874
No 26
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=34.81 E-value=39 Score=27.25 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=51.6
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
+|+|+|||-.. ===+|..++++|+++.. .. .+-++.-.| .|. .++....
T Consensus 1 lViGiGN~l~~----DDGvG~~v~~~L~~~~~--~~----------------~v~~id~gt----~~~---~l~~~l~-- 49 (139)
T cd00518 1 LVLGIGNPLRG----DDGFGPAVAERLEERYL--PP----------------GVEVIDGGT----LGL---ELLDLLE-- 49 (139)
T ss_pred CEEEECCcccc----cCcHHHHHHHHHHhcCC--CC----------------CeEEEECCC----CHH---HHHHHHh--
Confidence 58999998532 23499999999988642 00 011111111 111 2233222
Q ss_pred CCcEEEEeeccC--CCCceEEEcc------CCC--CCCCCchHHHHHhhc
Q 026076 131 LRHILVIYDEMS--LMNGVLRLQP------KGG--HGHHNGLKSVMNHLD 170 (244)
Q Consensus 131 ~~~ilVIhDDld--l~~G~vrlk~------~Gs--~~GHNGLkSI~~~L~ 170 (244)
-.+.+||.|=.+ .+.|.++.-. ... +.++-|+..+++.+.
T Consensus 50 ~~d~viiVDA~~~~~~pG~i~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~ 99 (139)
T cd00518 50 GADRVIIVDAVDSGGEPGTVRRLEPEELPAYLSALSTHQLGLAELLALLR 99 (139)
T ss_pred cCCeEEEEECccCCCCCCeEEEEchhhcccccCCCCCccCCHHHHHHHHH
Confidence 145677777654 6999988732 122 355559999998883
No 27
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=34.32 E-value=44 Score=27.37 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=48.9
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP 130 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~ 130 (244)
||+|+|||-.. ===+|..++++|++.. .+ . . +.++.- |.....++... .
T Consensus 2 lVlGiGN~L~~----DDG~G~~v~~~L~~~~-~~--~----~-----------v~~id~-------gt~~~~l~~~l--~ 50 (146)
T cd06063 2 TIIGCGNLNRG----DDGVGPILIRRLQAYL-LP--P----H-----------VRLVDC-------GTAGMEVMFRA--R 50 (146)
T ss_pred EEEEECCcccc----cCcHHHHHHHHHhhcC-CC--C----C-----------eEEEEC-------CCCHHHHHHHh--c
Confidence 79999998632 2349999999998642 11 0 0 111111 11111222222 1
Q ss_pred CCcEEEEeecc--CCCCceEEEc------c---CCCCCCCCchHHHHHh
Q 026076 131 LRHILVIYDEM--SLMNGVLRLQ------P---KGGHGHHNGLKSVMNH 168 (244)
Q Consensus 131 ~~~ilVIhDDl--dl~~G~vrlk------~---~Gs~~GHNGLkSI~~~ 168 (244)
-.+.+||.|=. +.++|.++.- . ...+.++=|+..+++.
T Consensus 51 ~~d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~ 99 (146)
T cd06063 51 GAKQLIIIDASSTGSEPGAVFEVPGEELEALPEPSYNLHDFRWDHALAA 99 (146)
T ss_pred CCCEEEEEEeCCCCCCCCeEEEEcchhccccccCCcCcccCCHHHHHHH
Confidence 23567777765 5589988752 1 1335677789988764
No 28
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=34.24 E-value=35 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHH
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~ 80 (244)
||+|+|||-.. ===+|..+++.|+++
T Consensus 1 lViGiGN~l~~----DDGvG~~v~~~L~~~ 26 (144)
T cd06068 1 LVAGVGNIFLG----DDGFGVEVARRLRPR 26 (144)
T ss_pred CEEEECccccc----cCcHHHHHHHHHhcc
Confidence 69999998643 224999999999865
No 29
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=32.29 E-value=47 Score=27.00 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEeecCCCCCCCcCcchHHHHHHHHHHHHc
Q 026076 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQ 81 (244)
Q Consensus 51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~ 81 (244)
||+|+|||=.. ===+|..++++|+++.
T Consensus 1 lVlGvGN~l~~----DDGvG~~v~~~L~~~~ 27 (139)
T cd06066 1 LVIGYGNPLRG----DDGLGPAVAERIEEWL 27 (139)
T ss_pred CEEEeCCcccc----ccchhHHHHHHHHhhC
Confidence 68999998532 2349999999998774
No 30
>PRK10870 transcriptional repressor MprA; Provisional
Probab=30.32 E-value=48 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.9
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG-FDQNI 230 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g-~~~~m 230 (244)
.+-+++.|+++|++.+...+.+..+.++.+-.+| +-++|
T Consensus 136 ~~~~~~~ls~~e~~~l~~~L~kl~~~l~~~~~~~~~~~~~ 175 (176)
T PRK10870 136 LHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAM 175 (176)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhCCCchhhhhc
Confidence 3457899999999999999999888888776655 55555
No 31
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=29.81 E-value=79 Score=32.07 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=48.8
Q ss_pred hhccchhHHHHHHHcCCCCCc---EEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCC
Q 026076 113 MNFSGESVGPLAAHYQVPLRH---ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP 185 (244)
Q Consensus 113 MN~SG~aV~~~~~~~ki~~~~---ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP 185 (244)
=|..|+++-++...+--.+++ ++||.|---.+--.+.+ .-|+.=|-=||-+|..+-+....--|.||||+.
T Consensus 516 eNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsv--npGnylerHLRaVieeIEtrSpveLlAIGighD 589 (620)
T COG4547 516 ENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSV--NPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 589 (620)
T ss_pred ccCChHHHHHHHHHHhcChhhceEEEEecCCCccccccccc--CCchHHHHHHHHHHHHHhcCCchhheeeecccc
Confidence 399999998888776555553 57788755444433433 334555666899999985445666699999973
No 32
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=27.23 E-value=78 Score=27.06 Aligned_cols=49 Identities=14% Similarity=0.374 Sum_probs=39.5
Q ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhh
Q 026076 183 GNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRF 233 (244)
Q Consensus 183 GrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~ 233 (244)
|.++ .++.+|....+++.-.+++++.++.+.+.++.++.+.+.-++.++
T Consensus 85 G~~s--~~l~~fL~~~l~erglKr~~k~~~~~y~~i~~l~~~~l~pa~erl 133 (210)
T PF12896_consen 85 GHAS--PALKQFLVNQLGERGLKRWEKAVDSAYSSIRKLLFEHLIPALERL 133 (210)
T ss_pred cCCC--HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 367899999999999999999999999999988877666665543
No 33
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=26.61 E-value=28 Score=33.66 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIA 78 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La 78 (244)
...|||||||- .-|--..|-.+++.|.
T Consensus 101 ~~iLVVGLGN~----~VTPDALGP~vv~~l~ 127 (358)
T TIGR01441 101 MTCLVVGLGNW----NVTPDALGPKVVENLL 127 (358)
T ss_pred CcEEEEeCCCc----CCCccccChheeccee
Confidence 35799999995 3689999999998774
No 34
>PRK02858 germination protease; Provisional
Probab=26.19 E-value=29 Score=33.68 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIA 78 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La 78 (244)
...|||||||- .-|--..|-.+++.|.
T Consensus 111 ~~vLVVGLGN~----~VTPDALGP~vv~~l~ 137 (369)
T PRK02858 111 ASCLIVGLGNW----NVTPDALGPLVVENVL 137 (369)
T ss_pred CcEEEEeCCCc----CCCccccChheeccee
Confidence 34799999995 3699999999998664
No 35
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=25.10 E-value=63 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=23.6
Q ss_pred chhHHHHHHHcCCCCCcEEEEeeccC
Q 026076 117 GESVGPLAAHYQVPLRHILVIYDEMS 142 (244)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVIhDDld 142 (244)
|.+++.+++.+++++++++++=|+.+
T Consensus 188 ~~ai~~l~~~~~i~~~~~~~~GD~~N 213 (254)
T PF08282_consen 188 GSAIKYLLEYLGISPEDIIAFGDSEN 213 (254)
T ss_dssp HHHHHHHHHHHTTSGGGEEEEESSGG
T ss_pred HHHHHHHhhhcccccceeEEeecccc
Confidence 68889999999999999999999764
No 36
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.03 E-value=49 Score=30.94 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCCCcEEEEeeccCCCCceEEEc
Q 026076 120 VGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQ 151 (244)
Q Consensus 120 V~~~~~~~ki~~~~ilVIhDDldl~~G~vrlk 151 (244)
+..++...+..++.+||++|||.++-|.-..|
T Consensus 127 Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK 158 (287)
T COG2607 127 LPDLVELLRARPEKFILFCDDLSFEEGDDAYK 158 (287)
T ss_pred HHHHHHHHhcCCceEEEEecCCCCCCCchHHH
Confidence 35567777888999999999999999976554
No 37
>PRK09256 hypothetical protein; Provisional
Probab=23.11 E-value=37 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEeeccCCCCceEEEc--cCCCCCCCC
Q 026076 135 LVIYDEMSLMNGVLRLQ--PKGGHGHHN 160 (244)
Q Consensus 135 lVIhDDldl~~G~vrlk--~~Gs~~GHN 160 (244)
+-|.+++++|...++++ .++|.||.|
T Consensus 2 ~~~~~~~~i~~~~l~~~~~RSSGPGGQ~ 29 (138)
T PRK09256 2 LRITRRLVIPENELEWRFIRASGPGGQN 29 (138)
T ss_pred cccCccCccCHHHeEEEEEEcCCCCccc
Confidence 34778899988888775 578999976
No 38
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=22.83 E-value=72 Score=30.27 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=33.0
Q ss_pred CCeeEEEEeCCchhhccchhHHHHHHHcCCCCCcEEEEeeccCCCC
Q 026076 100 GEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMN 145 (244)
Q Consensus 100 ~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~~~~ilVIhDDldl~~ 145 (244)
+-+++++=||.++|= ..+.+.|+|.+++.+.|-|-||-+.
T Consensus 216 ~R~P~v~GKP~~~m~------~~l~~~~~i~psRt~mvGDRL~TDI 255 (306)
T KOG2882|consen 216 GRQPIVLGKPSTFMF------EYLLEKFNIDPSRTCMVGDRLDTDI 255 (306)
T ss_pred cCCCeecCCCCHHHH------HHHHHHcCCCcceEEEEcccchhhh
Confidence 345799999999983 3568899999999999999887654
No 39
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=22.56 E-value=3.4e+02 Score=25.87 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=56.5
Q ss_pred cCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCCCCcEEE
Q 026076 64 GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILV 136 (244)
Q Consensus 64 ~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~~~~ilV 136 (244)
.|+|+.--.+++.=.+..|+.+++.+.+-++..-..+|.++-..-|.|-||. +.+..++..|+|...++++
T Consensus 149 atk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~e--k~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 149 ATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDE--KLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred CCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccH--HHHHHHHHHHeeccceEEE
Confidence 4788888888888888899999887776666666677888888889887764 6788999999997766655
No 40
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=22.36 E-value=3e+02 Score=23.95 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026076 154 GGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 154 Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
|=...|--++.+.+.+| -++.-++.| . . +.....|....+|+++++.+++.++...+.....++
T Consensus 114 Gv~~~~~~~~~ll~klG--v~~~~~~~G--~-~-K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va 177 (222)
T cd07018 114 GLSAETLFFKGLLDKLG--VEVQVFRVG--E-Y-KSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVA 177 (222)
T ss_pred ccchhhhhHHHHHHHcC--CcEEEEEEe--c-c-ccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457888999999995 456666664 2 2 234467877899999999999888877776655554
No 41
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.99 E-value=1.7e+02 Score=23.32 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.1
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 026076 197 QKFSPIEREQIDAALEQGVE 216 (244)
Q Consensus 197 s~Fs~~E~~~l~~~i~~a~~ 216 (244)
|.+|++|++.|.+++.++.+
T Consensus 1 s~Lt~eE~~~I~~Vl~R~~~ 20 (118)
T PF02318_consen 1 SHLTEEEREIILQVLQRDEE 20 (118)
T ss_dssp TTS-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhHHH
Confidence 46789999999999988665
No 42
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=21.92 E-value=3.8e+02 Score=23.05 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=41.4
Q ss_pred CCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026076 157 GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 157 ~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
..|..++...+.+| -++.-++.| . . +.....| .++++++++.++..++...+.....++
T Consensus 101 ~~~~~~~~~l~k~G--v~~~~~~~g--~-~-K~~~~~~--~~~s~~~~e~~~~~l~~~~~~f~~~va 159 (207)
T TIGR00706 101 LQGANVEKLYEKLG--IEFEVIKSG--E-Y-KDIGSPT--RELTPEERDILQNLVNESYEQFVQVVA 159 (207)
T ss_pred EecCCHHHHHHhCC--ceEEEEEcC--C-C-cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999995 456666665 2 2 2223445 789999999998888877776655554
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=21.02 E-value=2.1e+02 Score=20.51 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=26.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHH---------HHHhCHHHHHHhhhCC
Q 026076 197 QKFSPIEREQIDAALEQGVEAVRT---------LVLNGFDQNISRFNMG 236 (244)
Q Consensus 197 s~Fs~~E~~~l~~~i~~a~~al~~---------~i~~g~~~~mn~~N~~ 236 (244)
.+||++|.+.|-+.+.+-.+.+.. .-..-++...+.||..
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~ 51 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNAL 51 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999887766665555543 1123466777777763
No 44
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.00 E-value=1.2e+02 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=23.7
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCC
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIA 84 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~ 84 (244)
++||+|+ ||-- |||.+++|+|.+++++.
T Consensus 17 ~ilI~gf--pg~G------~VG~iA~~~Li~~l~~~ 44 (238)
T TIGR00161 17 PIVIEGF--PGVG------LVGNIAGWLLIEDLKLR 44 (238)
T ss_pred CEEEEeC--CCCC------hHHHHHHHHHHHHcCCe
Confidence 6899999 6643 89999999999999864
No 45
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.51 E-value=64 Score=29.82 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=33.5
Q ss_pred cCCCCCc-cc----cccccccCCC---HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 182 IGNPPGK-MD----MKAYLLQKFS---PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 182 IGrP~~~-~~----~~~yVLs~Fs---~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
+|.||.. .+ +.+||+.+|+ +.|.+.+-+......-.+..|--+....-.++.+...
T Consensus 136 lG~PPFE~PsI~k~V~nfv~~kf~~l~~~E~q~m~elakmFL~~lN~W~le~ps~~~~~~~~~d 199 (252)
T PF06466_consen 136 LGKPPFEKPSIEKAVTNFVLYKFSHLPQKEWQTMYELAKMFLHCLNHWKLEAPSQRRQRSNAED 199 (252)
T ss_pred CCCCCCCCccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHhhccCCChHHHHhhcCcch
Confidence 4556543 22 4689999996 5576666554444444555555566666666665543
No 46
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=20.13 E-value=1.6e+02 Score=25.15 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=29.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhC
Q 026076 194 YLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNM 235 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~ 235 (244)
+=|..|+|+.++++--.+-+...++..+..+.++.+|++...
T Consensus 81 ~gl~~F~P~~QD~~A~~Li~~~gal~~i~~G~~~~a~~~La~ 122 (151)
T cd00736 81 YGLYDFSPESQDLVAYQLIRERGALPDILAGRIEQAIAKLSN 122 (151)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHHHh
Confidence 345899999998875433333447788888789999987753
Done!