Query 026076
Match_columns 244
No_of_seqs 129 out of 1102
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 1.1E-75 3.9E-80 507.4 21.1 191 48-238 1-192 (193)
2 1ryb_A CRS2; alpha-beta, hydro 100.0 1.2E-75 4E-80 511.2 20.5 193 45-237 13-205 (205)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 3.2E-75 1.1E-79 503.9 17.5 186 49-235 4-190 (191)
4 4fyj_A PTH, peptidyl-tRNA hydr 100.0 2.2E-74 7.4E-79 501.3 21.1 186 50-236 11-198 (199)
5 3v2i_A PTH, peptidyl-tRNA hydr 100.0 4E-74 1.4E-78 506.6 20.4 190 47-237 21-221 (222)
6 4hoy_A PTH, peptidyl-tRNA hydr 100.0 6.2E-74 2.1E-78 496.5 20.4 187 49-237 4-191 (193)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 4.5E-74 1.6E-78 501.7 16.4 185 48-233 22-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 8.9E-76 3.1E-80 508.4 0.0 189 48-237 3-193 (194)
9 1cfz_A Hydrogenase 2 maturatio 67.5 5.8 0.0002 32.1 4.3 135 48-222 1-149 (162)
10 3pu6_A Uncharacterized protein 56.7 12 0.00041 30.2 4.4 137 48-224 3-147 (157)
11 2e85_A Hydrogenase 3 maturatio 55.1 9.8 0.00033 30.8 3.6 132 48-222 4-146 (159)
12 2ba3_A NIKA; dimer, bacterial 48.0 11 0.00037 24.5 2.3 33 182-214 4-37 (51)
13 2ea9_A JW2626, hypothetical pr 45.6 22 0.00076 27.5 4.0 32 194-225 35-66 (105)
14 2inw_A Putative structural pro 45.2 27 0.00093 28.0 4.5 32 194-225 49-80 (133)
15 3utn_X Thiosulfate sulfurtrans 33.5 36 0.0012 30.6 4.0 36 109-144 90-125 (327)
16 4hbl_A Transcriptional regulat 33.0 40 0.0014 25.4 3.7 31 192-222 117-147 (149)
17 2zet_C Melanophilin; complex, 30.9 68 0.0023 26.0 5.0 21 196-216 14-34 (153)
18 2k9i_A Plasmid PRN1, complete 29.9 56 0.0019 20.7 3.6 49 183-232 1-49 (55)
19 4gib_A Beta-phosphoglucomutase 29.8 82 0.0028 25.6 5.4 70 118-213 174-243 (250)
20 1lj9_A Transcriptional regulat 28.3 68 0.0023 23.5 4.3 32 192-223 108-139 (144)
21 3kp7_A Transcriptional regulat 28.1 74 0.0025 23.8 4.5 31 192-222 118-148 (151)
22 2llk_A Cyclin-D-binding MYB-li 28.0 1.2E+02 0.0041 21.4 5.3 42 196-237 23-67 (73)
23 3deu_A Transcriptional regulat 26.2 43 0.0015 26.0 2.9 32 192-223 133-164 (166)
24 2jva_A Peptidyl-tRNA hydrolase 25.9 25 0.00085 27.1 1.4 41 135-183 2-44 (108)
25 3r4c_A Hydrolase, haloacid deh 23.7 48 0.0017 27.0 2.9 25 117-141 196-220 (268)
26 2cqq_A RSGI RUH-037, DNAJ homo 23.6 1.2E+02 0.0042 21.3 4.7 39 197-235 9-54 (72)
27 2yjz_A Metalloreductase steap4 29.0 17 0.00059 29.9 0.0 37 35-72 8-44 (201)
28 3fzq_A Putative hydrolase; YP_ 23.2 51 0.0017 26.8 2.9 26 116-141 201-226 (274)
29 1x93_A Hypothetical protein HP 22.8 23 0.0008 24.1 0.6 32 199-230 8-39 (55)
30 4dh9_Y YAEJ; ribosome, YAEJ, r 22.6 15 0.00051 29.6 -0.5 41 135-183 2-44 (140)
31 3dnp_A Stress response protein 21.6 56 0.0019 27.0 2.9 25 116-140 203-227 (290)
32 2pq0_A Hypothetical conserved 21.6 50 0.0017 26.9 2.5 24 117-140 185-208 (258)
33 1ygm_A Hypothetical protein BS 21.4 38 0.0013 26.1 1.6 25 198-222 32-56 (118)
34 1c8b_A Spore protease; novel f 21.3 38 0.0013 31.5 1.9 93 47-154 112-214 (371)
35 4dw8_A Haloacid dehalogenase-l 21.3 54 0.0018 26.9 2.7 25 117-141 199-223 (279)
36 3pgv_A Haloacid dehalogenase-l 21.2 57 0.002 27.2 2.9 26 116-141 210-235 (285)
37 3dao_A Putative phosphatse; st 21.0 58 0.002 27.2 2.9 26 116-141 212-237 (283)
38 1am7_A Lysozyme; glycosidase, 20.9 1E+02 0.0035 25.2 4.2 41 194-235 81-122 (158)
39 1g6u_A Domain swapped dimer; d 20.7 1.2E+02 0.004 19.7 3.6 23 197-219 15-40 (48)
40 1zbd_B Rabphilin-3A; G protein 20.5 1E+02 0.0035 24.3 4.0 21 196-216 7-27 (134)
41 3b64_A Macrophage migration in 20.4 74 0.0025 23.3 3.1 22 124-146 85-106 (112)
42 3mpo_A Predicted hydrolase of 20.3 53 0.0018 27.0 2.4 25 116-140 198-222 (279)
43 3bj6_A Transcriptional regulat 20.2 1.2E+02 0.004 22.5 4.2 31 192-222 119-149 (152)
44 3nrv_A Putative transcriptiona 20.1 77 0.0026 23.4 3.2 29 192-220 119-147 (148)
45 3l7y_A Putative uncharacterize 20.1 62 0.0021 27.3 2.9 25 117-141 230-254 (304)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=1.1e-75 Score=507.44 Aligned_cols=191 Identities=32% Similarity=0.540 Sum_probs=180.8
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 126 (244)
|++|||||||||++|++|||||||+++|+||++++++|. +.++++.++++.+++.+++|+||+||||+||++|+++++|
T Consensus 1 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~ 80 (193)
T 2pth_A 1 TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF 80 (193)
T ss_dssp CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred CcEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence 358999999999999999999999999999999999987 5568899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076 127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 206 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~ 206 (244)
|+|++++|||||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||..+.++++|||++|+++|++.
T Consensus 81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 2pth_A 81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999994278999999999999655578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026076 207 IDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 238 (244)
Q Consensus 207 l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~~ 238 (244)
|++++++|++|++.|+.++++++||+||..+.
T Consensus 161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~~ 192 (193)
T 2pth_A 161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA 192 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCccC
Confidence 99999999999999999999999999998643
No 2
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1.2e-75 Score=511.19 Aligned_cols=193 Identities=75% Similarity=1.218 Sum_probs=178.1
Q ss_pred cccCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHH
Q 026076 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLA 124 (244)
Q Consensus 45 ~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~ 124 (244)
+++.+||||||||||++|++|||||||+++|+||++++++|++.++++.++++.+++.+|+|+||+||||+||++|++++
T Consensus 13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 56678999999999999999999999999999999999998877788999999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHH
Q 026076 125 AHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER 204 (244)
Q Consensus 125 ~~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~ 204 (244)
+||+|++++|||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999933789999999999997656799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 205 EQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 205 ~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
+.|++++++|++|++.|+.++++++||+||..|
T Consensus 173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~ 205 (205)
T 1ryb_A 173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 999999999999999999999999999999764
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=3.2e-75 Score=503.86 Aligned_cols=186 Identities=41% Similarity=0.734 Sum_probs=168.0
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
++|||||||||++|++|||||||+++|+||+++++++.+ .++++.++++.+++++++|+||+||||+||++|++++++|
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y 83 (191)
T 2z2i_A 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY 83 (191)
T ss_dssp CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence 589999999999999999999999999999999998865 3578999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 207 (244)
Q Consensus 128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l 207 (244)
+|+++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 162 (191)
T 2z2i_A 84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162 (191)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 5899999999999997556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhC
Q 026076 208 DAALEQGVEAVRTLVLNGFDQNISRFNM 235 (244)
Q Consensus 208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~ 235 (244)
++++++|++|++.++++|++++||+||.
T Consensus 163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 163 PTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp HHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 9999999999999999999999999995
No 4
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=2.2e-74 Score=501.31 Aligned_cols=186 Identities=33% Similarity=0.582 Sum_probs=178.9
Q ss_pred eEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 026076 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 128 (244)
Q Consensus 50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 128 (244)
-|||||||||++|++|||||||+++|+||++++++|.+ .++++.++++.+++.+++|+||+||||+||++|++++++|+
T Consensus 11 ~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yk 90 (199)
T 4fyj_A 11 QLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 90 (199)
T ss_dssp CEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred eEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhC
Confidence 49999999999999999999999999999999998864 46779999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCC-CccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076 129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 207 (244)
Q Consensus 129 i~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~-~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l 207 (244)
|+++++||||||||||+|++|+|++||++||||||||+++| ||+ +|+|||||||||+.++++++|||++|+++|++.|
T Consensus 91 i~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 169 (199)
T 4fyj_A 91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL 169 (199)
T ss_dssp CCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred CCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 577 8999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026076 208 DAALEQGVEAVRTLVLNGFDQNISRFNMG 236 (244)
Q Consensus 208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~~ 236 (244)
++++++|++|++.|+++|++++||+||..
T Consensus 170 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 170 DTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 99999999999999999999999999975
No 5
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=4e-74 Score=506.56 Aligned_cols=190 Identities=34% Similarity=0.555 Sum_probs=175.4
Q ss_pred cCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 026076 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA 125 (244)
Q Consensus 47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 125 (244)
+|+||||||||||++|++|||||||+++|+||++++++|.+. ++++.++++.+++.+++|+||+||||+||++|+++++
T Consensus 21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (222)
T 3v2i_A 21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH 100 (222)
T ss_dssp -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence 357899999999999999999999999999999999988764 5789999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCC----------CCcccccccc
Q 026076 126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL 195 (244)
Q Consensus 126 ~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP----------~~~~~~~~yV 195 (244)
+|+|++++|||||||||||+|++|+|.+||++||||||||+++| +|++|+||||||||| +.+.++++||
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV 179 (222)
T 3v2i_A 101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV 179 (222)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence 99999999999999999999999999999999999999999999 589999999999999 5567899999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 196 LQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 196 Ls~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
|++|+++|++.|++++++|+++++.|++++++++||+||...
T Consensus 180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~~ 221 (222)
T 3v2i_A 180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRNG 221 (222)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC----
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999764
No 6
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=6.2e-74 Score=496.55 Aligned_cols=187 Identities=37% Similarity=0.626 Sum_probs=179.7
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
.+|||||||||++|++|||||||+++|.||++++++++. .++.+.++++.+++.+++|+||+||||+||++|++++++|
T Consensus 4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ 83 (193)
T 4hoy_A 4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY 83 (193)
T ss_dssp CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence 479999999999999999999999999999999998855 4678899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHHH
Q 026076 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 207 (244)
Q Consensus 128 ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~l 207 (244)
+++++++||||||||||+|++|+|++||++||||||||+++| |+ +|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 4hoy_A 84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 45 7999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 208 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 208 ~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
++++++|+++++.|+++|++++||+||+++
T Consensus 162 ~~~i~~a~~~i~~~~~~~~~~amn~~n~~k 191 (193)
T 4hoy_A 162 DGAIDHALSKVKLLVQGQVPQAMNQINAYK 191 (193)
T ss_dssp HHHHHHHHHTHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence 999999999999999999999999999875
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=4.5e-74 Score=501.67 Aligned_cols=185 Identities=35% Similarity=0.577 Sum_probs=178.2
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 126 (244)
++||||||||||++|++|||||||+++|+||++++++|.+. ++++.++++.+++.+++|+||+||||+||++|++++++
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (207)
T 3nea_A 22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF 101 (207)
T ss_dssp CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence 36999999999999999999999999999999999998765 67899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCccccccccccCCCHHHHHH
Q 026076 127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 206 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~~ 206 (244)
|+|+++++||||||||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~ 180 (207)
T 3nea_A 102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD 180 (207)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 589999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHhh
Q 026076 207 IDAALEQGVEAVRTLVLNGFDQNISRF 233 (244)
Q Consensus 207 l~~~i~~a~~al~~~i~~g~~~~mn~~ 233 (244)
|++++++|++|++.|++++++++||++
T Consensus 181 l~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 181 IDSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 999999999999999999999999874
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=8.9e-76 Score=508.36 Aligned_cols=189 Identities=33% Similarity=0.570 Sum_probs=178.8
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 126 (244)
|++|||||||||++|++|||||||+++|+||++++++|. +.++++.++++.+++++++|+||+||||+||++|+++++|
T Consensus 3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f 82 (194)
T 4fno_A 3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 82 (194)
Confidence 468999999999999999999999999999999998876 3467888998889999999999999999999999999999
Q ss_pred cCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCC-CCccEEEEccCCCCCccccccccccCCCHHHHH
Q 026076 127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205 (244)
Q Consensus 127 ~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt-~~f~RLrIGIGrP~~~~~~~~yVLs~Fs~~E~~ 205 (244)
|+|+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++
T Consensus 83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 161 (194)
T 4fno_A 83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161 (194)
Confidence 9999999999999999999999999999999999999999999 57 799999999999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026076 206 QIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 206 ~l~~~i~~a~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
.|++++++|++|++.|+.++++++||+||..+
T Consensus 162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~k 193 (194)
T 4fno_A 162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK 193 (194)
Confidence 99999999999999999999999999999743
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=67.48 E-value=5.8 Score=32.14 Aligned_cols=135 Identities=25% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
|+.||+|+|||-. .===+|..++++|++++..+-. ..++=.- +.-||+- ..+..
T Consensus 1 m~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~~---------------v~vid~g-t~~~~l~-----~~l~~- 54 (162)
T 1cfz_A 1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY---------------VEILDGG-TAGMELL-----GDMAN- 54 (162)
T ss_dssp CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCTT---------------EEEEEEE-TCCGGGH-----HHHSS-
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCCCCCC---------------eEEEECC-CCHHHHH-----HHHhC-
Confidence 4679999999842 2225999999999987643210 0111000 1112221 11221
Q ss_pred CCCCCcEEEEee---ccCCCCceEEEccC---------CCCCCCCchHHHHHhhcCCCCcc-EE-EEccCCCCCcccccc
Q 026076 128 QVPLRHILVIYD---EMSLMNGVLRLQPK---------GGHGHHNGLKSVMNHLDGCREFP-RL-CIGIGNPPGKMDMKA 193 (244)
Q Consensus 128 ki~~~~ilVIhD---Dldl~~G~vrlk~~---------Gs~~GHNGLkSI~~~L~gt~~f~-RL-rIGIGrP~~~~~~~~ 193 (244)
.+.+||-| +.+.+.|+|++-.. .-+.+.-|+..+++.+.-..+++ ++ =||| .|. ++ +
T Consensus 55 ----~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~ 125 (162)
T 1cfz_A 55 ----RDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-E 125 (162)
T ss_dssp ----CSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-C
T ss_pred ----CCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-C
Confidence 36677778 56889999886321 22344458888888763223455 43 4577 343 22 3
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 194 YLLQKFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
| -...|++=++.+ +++++.+..++
T Consensus 126 ~-g~~LS~~v~~av----~~a~~~i~~~l 149 (162)
T 1cfz_A 126 P-HIGLTPTVEAMI----EPALEQVLAAL 149 (162)
T ss_dssp S-BSSCCHHHHTTH----HHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHH----HHHHHHHHHHH
Confidence 3 334566544444 44555554444
No 10
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=56.68 E-value=12 Score=30.24 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 127 (244)
|+.||+|+|||-. .===+|..++++|++.+. . .+++=.- + .|..+-..+...
T Consensus 3 m~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~p--------~----------v~vid~G-t-----~~~~l~~~l~~~ 54 (157)
T 3pu6_A 3 LKKVLLCVGNELR----GDDGVAIALGRLVEEQMP--------E----------WSVFFGY-D-----TPESEFGKLREL 54 (157)
T ss_dssp CCEEEEEECCTTB----GGGGHHHHHHHHHHHHCT--------T----------EEEEEEE-T-----CGGGGHHHHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCC--------C----------eEEEECC-C-----CHHHHHHHHHhc
Confidence 5689999999842 233589999999984321 0 1111110 1 222222223321
Q ss_pred CCCCCcEEEEeec-cCCCCceEEEccCC------CCCCCCchHHHHHhhcCCCCccEEE-EccCCCCCccccccccccCC
Q 026076 128 QVPLRHILVIYDE-MSLMNGVLRLQPKG------GHGHHNGLKSVMNHLDGCREFPRLC-IGIGNPPGKMDMKAYLLQKF 199 (244)
Q Consensus 128 ki~~~~ilVIhDD-ldl~~G~vrlk~~G------s~~GHNGLkSI~~~L~gt~~f~RLr-IGIGrP~~~~~~~~yVLs~F 199 (244)
..+. +||.|= .+.++|++++-..- -+.+.-|+..+++.+.. ..+++. |||- |. ..+.-+|- ...
T Consensus 55 --~~d~-lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie-p~-~~~~~~~g-~~L 126 (157)
T 3pu6_A 55 --APDV-IVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS-VL-LENVLHFS-EGL 126 (157)
T ss_dssp --CCSE-EEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE-EC-GGGGSSCB-CSC
T ss_pred --CCCE-EEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE-Ee-ecCCCCCC-CCC
Confidence 2344 444443 46788999874432 35677899999998842 245654 4665 32 11112332 245
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 026076 200 SPIEREQIDAALEQGVEAVRTLVLN 224 (244)
Q Consensus 200 s~~E~~~l~~~i~~a~~al~~~i~~ 224 (244)
|++ +++.++++++.++.|+..
T Consensus 127 S~~----V~~av~~a~~~i~~~~~~ 147 (157)
T 3pu6_A 127 SQG----ASDSAFVALGRIKELDGM 147 (157)
T ss_dssp CHH----HHHHHHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHHHHHHhh
Confidence 555 455566667777776653
No 11
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=55.05 E-value=9.8 Score=30.75 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeC-CchhhccchhHHHHHHH
Q 026076 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP-QAYMNFSGESVGPLAAH 126 (244)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP-~TyMN~SG~aV~~~~~~ 126 (244)
|+.||+|+|||-. .===+|..++++|++.+. . + +-++-- +.=||+- ..+..
T Consensus 4 M~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~~---~--------------~--v~vid~gt~~~~l~-----~~l~~ 55 (159)
T 2e85_A 4 VTDVLLCVGNSMM----GDDGAGPLLAEKCAAAPK---G--------------N--WVVIDGGSAPENDI-----VAIRE 55 (159)
T ss_dssp CCEEEEEECCGGG----GGGGHHHHHHHHHHHSCC---T--------------T--CEEEECTTCSGGGH-----HHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHhhhCC---C--------------C--eEEEECCCCHHHHH-----HHHhc
Confidence 5679999999842 222599999999987531 0 0 111111 2223332 22222
Q ss_pred cCCCCCcEEEEee--ccCCCCceEEEcc-------CCCCCCCCchHHHHHhhcCCCCccEEE-EccCCCCCccccccccc
Q 026076 127 YQVPLRHILVIYD--EMSLMNGVLRLQP-------KGGHGHHNGLKSVMNHLDGCREFPRLC-IGIGNPPGKMDMKAYLL 196 (244)
Q Consensus 127 ~ki~~~~ilVIhD--Dldl~~G~vrlk~-------~Gs~~GHNGLkSI~~~L~gt~~f~RLr-IGIGrP~~~~~~~~yVL 196 (244)
+ .+ +.+||.| +.+.+.|+|+.-. ..-+.+.-|+..+++.|. ...+++. ||| .|.. . +| =
T Consensus 56 ~--~~-d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~--~~~p~v~liGi-~p~~-~---~~-g 124 (159)
T 2e85_A 56 L--RP-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK--EDIGEVIFLGI-QPDI-V---GF-Y 124 (159)
T ss_dssp H--CC-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH--HHHSEEEEEEE-CCSC-C---CT-T
T ss_pred C--CC-CEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh--CCCCcEEEEEE-EEeE-c---CC-C
Confidence 1 23 4455666 4678899998522 123556669999999984 2455543 577 3432 2 22 1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 197 QKFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 197 s~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
...|++ +++.++++++.++.|+
T Consensus 125 ~~LS~~----v~~av~~a~~~l~~~~ 146 (159)
T 2e85_A 125 YPMTQP----IKDAVETVYQRLEGWE 146 (159)
T ss_dssp CCCCHH----HHHHHHHHHTTSTTCC
T ss_pred CCCCHH----HHHHHHHHHHHHHHHh
Confidence 245554 4445555555555544
No 12
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=48.01 E-value=11 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=23.0
Q ss_pred cCCCCCcccc-ccccccCCCHHHHHHHHHHHHHH
Q 026076 182 IGNPPGKMDM-KAYLLQKFSPIEREQIDAALEQG 214 (244)
Q Consensus 182 IGrP~~~~~~-~~yVLs~Fs~~E~~~l~~~i~~a 214 (244)
+|||.+.... ...+-=+++++|.+.|++....+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh
Confidence 5788754333 34455589999999998776655
No 13
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=45.64 E-value=22 Score=27.47 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=27.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026076 194 YLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 225 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g 225 (244)
=+-+.||++|...||++++..++-++..+..|
T Consensus 35 gi~G~Fs~~~~~~Ld~aFP~~ikqlE~mL~sG 66 (105)
T 2ea9_A 35 SITGKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp EEESCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CeeEecCHHHHHHHHHHhHHHHHHHHHHhccC
Confidence 35689999999999999999998888877644
No 14
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=45.23 E-value=27 Score=27.97 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=27.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026076 194 YLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 225 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g 225 (244)
=+-+.|+++|...||++++...+-++..+..|
T Consensus 49 gi~G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 49 GIRGRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp EEESCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeeEecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 35689999999999999999999888877644
No 15
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=33.53 E-value=36 Score=30.63 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCchhhccchhHHHHHHHcCCCCCcEEEEeeccCCC
Q 026076 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLM 144 (244)
Q Consensus 109 P~TyMN~SG~aV~~~~~~~ki~~~~ilVIhDDldl~ 144 (244)
|...|=-|-+...+++..++|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 345677788889999999999999999999997753
No 16
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=32.97 E-value=40 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.0
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
.+++++.|+++|++.+...+.+..+.++.+.
T Consensus 117 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 117 SSCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp HTTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3448899999999999999998888887664
No 17
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.89 E-value=68 Score=25.96 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 026076 196 LQKFSPIEREQIDAALEQGVE 216 (244)
Q Consensus 196 Ls~Fs~~E~~~l~~~i~~a~~ 216 (244)
|+.++++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 899999999999999887653
No 18
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=29.94 E-value=56 Score=20.71 Aligned_cols=49 Identities=6% Similarity=-0.003 Sum_probs=27.2
Q ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Q 026076 183 GNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISR 232 (244)
Q Consensus 183 GrP~~~~~~~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~mn~ 232 (244)
|||..+. -..-+-=++++++.+.|++...+.-.....++...+...+.+
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7885322 223344478888888888765443334444554444444443
No 19
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=29.83 E-value=82 Score=25.56 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=44.6
Q ss_pred hhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCchHHHHHhhcCCCCccEEEEccCCCCCcccccccccc
Q 026076 118 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 197 (244)
Q Consensus 118 ~aV~~~~~~~ki~~~~ilVIhDDldl~~G~vrlk~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIGrP~~~~~~~~yVLs 197 (244)
.....+++.++++|+++|+|=|-.. +|..+-. -.+ -.|||+++.. ..-++||+.
T Consensus 174 ~~~~~a~~~lg~~p~e~l~VGDs~~---------------------Di~aA~~--aG~--~~i~v~~~~~-~~~ad~vi~ 227 (250)
T 4gib_A 174 EIFLMSAKGLNVNPQNCIGIEDASA---------------------GIDAINS--ANM--FSVGVGNYEN-LKKANLVVD 227 (250)
T ss_dssp HHHHHHHHHHTCCGGGEEEEESSHH---------------------HHHHHHH--TTC--EEEEESCTTT-TTTSSEEES
T ss_pred HHHHHHHHHhCCChHHeEEECCCHH---------------------HHHHHHH--cCC--EEEEECChhH-hccCCEEEC
Confidence 4556778889999999999877421 2223221 112 2467877643 344799999
Q ss_pred CCCHHHHHHHHHHHHH
Q 026076 198 KFSPIEREQIDAALEQ 213 (244)
Q Consensus 198 ~Fs~~E~~~l~~~i~~ 213 (244)
.+++-+.+.|.+.+++
T Consensus 228 ~l~eL~~~~i~~~~n~ 243 (250)
T 4gib_A 228 STNQLKFEYIQEKYNE 243 (250)
T ss_dssp SGGGCCHHHHHHHHHH
T ss_pred ChHhCCHHHHHHHHHH
Confidence 9877666666665553
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.33 E-value=68 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=26.5
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
.+.+++.++++|.+.+.+.+.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45688999999999999999988888776554
No 21
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=28.09 E-value=74 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
.+-+++.|+++|++.+.+.+.+..+.++.+.
T Consensus 118 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 118 ASDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999988888777654
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=27.99 E-value=1.2e+02 Score=21.44 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=28.3
Q ss_pred ccCCCHHHHHHHHHHHHHH---HHHHHHHHHhCHHHHHHhhhCCC
Q 026076 196 LQKFSPIEREQIDAALEQG---VEAVRTLVLNGFDQNISRFNMGQ 237 (244)
Q Consensus 196 Ls~Fs~~E~~~l~~~i~~a---~~al~~~i~~g~~~~mn~~N~~~ 237 (244)
-++||++|-++|-+.+.+- ...|...+-.--....++|+..+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L~ 67 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMK 67 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4799999999887765543 34444444444777888888653
No 23
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.17 E-value=43 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=25.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 223 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i~ 223 (244)
.+-+++.|+++|++.+.+.+++..+.++.+..
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678899999999999999988888776544
No 24
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=25.88 E-value=25 Score=27.13 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=30.2
Q ss_pred EEEeeccCCCCceEEEc--cCCCCCCCCchHHHHHhhcCCCCccEEEEccC
Q 026076 135 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183 (244)
Q Consensus 135 lVIhDDldl~~G~vrlk--~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIG 183 (244)
|.|.+++++|...++++ ..+|+||.| ...++.=.||+.=|.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn--------VNKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN--------VNKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS--------SCCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCC--------cCCCcceEEEEEEcc
Confidence 55778899999988876 478899977 333455678888764
No 25
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.73 E-value=48 Score=27.03 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.8
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecc
Q 026076 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
|.++..+++.++++++++++|=|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 5889999999999999999999954
No 26
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.64 E-value=1.2e+02 Score=21.26 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=26.8
Q ss_pred cCCCHHHHHHHHHHHHHH-------HHHHHHHHHhCHHHHHHhhhC
Q 026076 197 QKFSPIEREQIDAALEQG-------VEAVRTLVLNGFDQNISRFNM 235 (244)
Q Consensus 197 s~Fs~~E~~~l~~~i~~a-------~~al~~~i~~g~~~~mn~~N~ 235 (244)
+.||.+|.++|++++... ++.|-.++-.....++++|+.
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 579999999998876554 555555553446677777664
No 27
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=28.98 E-value=17 Score=29.88 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=24.7
Q ss_pred ccCCCCCCcccccCCeEEEeecCCCCCCCcCcchHHHH
Q 026076 35 SLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFE 72 (244)
Q Consensus 35 ~~~~~~~~~~~~~~~~LIVGLGNPG~~Y~~TRHNvGf~ 72 (244)
-+|...++. ...|.+.|+|+||-|..+...-...|+.
T Consensus 8 ~~~~~~~~~-~~~~~I~iIG~G~mG~~la~~L~~~G~~ 44 (201)
T 2yjz_A 8 EFPLTVDSS-EKQGVVCIFGTGDFGKSLGLKMLQCGYS 44 (201)
Confidence 456555555 4445678999999998876655555543
No 28
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=23.21 E-value=51 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.9
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecc
Q 026076 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 36788999999999999999999854
No 29
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=22.76 E-value=23 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 026076 199 FSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 230 (244)
Q Consensus 199 Fs~~E~~~l~~~i~~a~~al~~~i~~g~~~~m 230 (244)
||+||-+.|++..++-+|.+..+|+.-+-+++
T Consensus 8 ~SkEey~~L~klA~eE~eSV~sfIKR~IlK~l 39 (55)
T 1x93_A 8 FSDEQYQKLEKMANEEEESVGSYIKRYILKAL 39 (55)
T ss_dssp ECHHHHHHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988888888888887666655
No 30
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=22.65 E-value=15 Score=29.63 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=29.6
Q ss_pred EEEeeccCCCCceEEEc--cCCCCCCCCchHHHHHhhcCCCCccEEEEccC
Q 026076 135 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183 (244)
Q Consensus 135 lVIhDDldl~~G~vrlk--~~Gs~~GHNGLkSI~~~L~gt~~f~RLrIGIG 183 (244)
|.|.+++++|...+++. ..+|+||.| ...++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQn--------VNKv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQH--------VNKTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHH--------HHTTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCc--------cccccceEEEEEecc
Confidence 56788999999888876 477889955 333455677887654
No 31
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.59 E-value=56 Score=26.98 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=22.8
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 026076 116 SGESVGPLAAHYQVPLRHILVIYDE 140 (244)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVIhDD 140 (244)
-|.++..+++.++++++++++|=|.
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788999999999999999999995
No 32
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=21.55 E-value=50 Score=26.93 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.8
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 026076 117 GESVGPLAAHYQVPLRHILVIYDE 140 (244)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVIhDD 140 (244)
|.++..+++.++++++++++|=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 677899999999999999999984
No 33
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein; NMR {Bacillus subtilis subsp}
Probab=21.36 E-value=38 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 198 KFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 198 ~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
+.+.+|+++|-.+|++.-+.+..+|
T Consensus 32 KVt~~EkeQLS~AIDrmnEGLD~fI 56 (118)
T 1ygm_A 32 KVTSEEKEQLSTAIDRMNEGLDAFI 56 (118)
T ss_dssp TCSCSHHHHHHHHHHTTTHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHH
Confidence 5678999999999888777555544
No 34
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=21.34 E-value=38 Score=31.55 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=52.8
Q ss_pred cCCeEEEeecCCCCCCCcCcchHHHHHHHHHHHH-cCCCccccccceEEEEEEECCeeEEEEeC----CchhhccchhHH
Q 026076 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLAKP----QAYMNFSGESVG 121 (244)
Q Consensus 47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~-~~~~~~~~~~~~~~~~~~~~~~~v~L~KP----~TyMN~SG~aV~ 121 (244)
+.+.|||||||.- -|--..|-.+++.|.-. +-..+..... .-+-.+|.-+-| +|=||. ++.|+
T Consensus 112 ~~~iLVVGLGN~~----vTpDALGP~Vv~~l~vTrHl~~~g~~~~-------~~~~~pVsAiaPGVmg~TGiEt-~EiI~ 179 (371)
T 1c8b_A 112 DASCLVVGLGNLS----VTPDALGPKAVDNLLITRHLFELQPESV-------QDGFRPVSAIVPGVMGMTGIET-SDIIF 179 (371)
T ss_dssp TCCEEEEECSCSS----SGGGCHHHHHHTTCCCCHHHHHHSCCSS-------CSSCCCEEEECSGGGCCCSSCH-HHHHH
T ss_pred CCcEEEEEcCCCC----cCccccCcceeeeeeEEeehhhhCchhh-------ccCCCceEEecCCccccccccH-HHHHH
Confidence 4468999999964 58999999999866311 1011111000 001235666666 444553 34556
Q ss_pred HHHHHcCCCCCcEEEEeeccCC----CCc-eEEEccCC
Q 026076 122 PLAAHYQVPLRHILVIYDEMSL----MNG-VLRLQPKG 154 (244)
Q Consensus 122 ~~~~~~ki~~~~ilVIhDDldl----~~G-~vrlk~~G 154 (244)
.+...++- +++|.-|-|.. -+| .|.+.-.|
T Consensus 180 gIv~k~kP---d~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 180 GVVKKVNP---DFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHHCC---SEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHHhcCC---CEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 66665543 56777787543 256 77776554
No 35
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=21.31 E-value=54 Score=26.93 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=23.0
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecc
Q 026076 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
|.++..+++.++++++++++|=|..
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~~ 223 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDGY 223 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCh
Confidence 8899999999999999999999953
No 36
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=21.23 E-value=57 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecc
Q 026076 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
-|.++..+++.++++++++++|=|..
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCcH
Confidence 38899999999999999999999964
No 37
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.03 E-value=58 Score=27.19 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=23.0
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecc
Q 026076 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
-|.++..+++.++++++++++|=|..
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~~ 237 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDNL 237 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 36789999999999999999999953
No 38
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=20.87 E-value=1e+02 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=30.2
Q ss_pred ccccCCCHHHHHHHHH-HHHHHHHHHHHHHHhCHHHHHHhhhC
Q 026076 194 YLLQKFSPIEREQIDA-ALEQGVEAVRTLVLNGFDQNISRFNM 235 (244)
Q Consensus 194 yVLs~Fs~~E~~~l~~-~i~~a~~al~~~i~~g~~~~mn~~N~ 235 (244)
+=|..|+|+-++++-- .|. -..++..+.+++++.+|++...
T Consensus 81 lgl~~F~P~~QD~~A~~Li~-~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 81 LGLKDFSPKSQDAVALQQIK-ERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp HTCCCCCHHHHHHHHHHHHH-HTTCHHHHHHTCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHH-HcCcHHHHHcCCHHHHHHHhcc
Confidence 3367899999987753 333 3456788888889999988764
No 39
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.71 E-value=1.2e+02 Score=19.73 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=15.0
Q ss_pred cCCCHHHHHHHHH---HHHHHHHHHH
Q 026076 197 QKFSPIEREQIDA---ALEQGVEAVR 219 (244)
Q Consensus 197 s~Fs~~E~~~l~~---~i~~a~~al~ 219 (244)
..|+|+|+..++. .+++-..+++
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999998874 3444444443
No 40
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.49 E-value=1e+02 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=16.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 026076 196 LQKFSPIEREQIDAALEQGVE 216 (244)
Q Consensus 196 Ls~Fs~~E~~~l~~~i~~a~~ 216 (244)
|+.+|++|++.|.+++.+..+
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~ 27 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEK 27 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHH
Confidence 577899999999998887554
No 41
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.43 E-value=74 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=18.4
Q ss_pred HHHcCCCCCcEEEEeeccCCCCc
Q 026076 124 AAHYQVPLRHILVIYDEMSLMNG 146 (244)
Q Consensus 124 ~~~~ki~~~~ilVIhDDldl~~G 146 (244)
.+..+++++++.|+.+|++ .+|
T Consensus 85 ~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 85 TKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHhCcCcceEEEEEEEhh-Hee
Confidence 3457999999999999998 665
No 42
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=20.32 E-value=53 Score=26.98 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.0
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 026076 116 SGESVGPLAAHYQVPLRHILVIYDE 140 (244)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVIhDD 140 (244)
-|.+++.+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4789999999999999999999984
No 43
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=20.19 E-value=1.2e+02 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=24.6
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 222 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~~i 222 (244)
.+.++..|+++|.+.+.+.+.+..+.++...
T Consensus 119 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 149 (152)
T 3bj6_A 119 LALFSEGFSSVELTAYHKVQLALTRFFADLA 149 (152)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 4557888999999999888888887776553
No 44
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.14 E-value=77 Score=23.44 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHH
Q 026076 192 KAYLLQKFSPIEREQIDAALEQGVEAVRT 220 (244)
Q Consensus 192 ~~yVLs~Fs~~E~~~l~~~i~~a~~al~~ 220 (244)
.+-+++.|+++|.+.+.+.+.+..+.++.
T Consensus 119 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 119 EKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 45678889999999998888887776654
No 45
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=20.11 E-value=62 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.5
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecc
Q 026076 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (244)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVIhDDl 141 (244)
|.++..+++.++++++++++|=|..
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs~ 254 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDGG 254 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHhCcCHHHEEEECCCH
Confidence 6689999999999999999999953
Done!