RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026076
         (244 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  191 bits (485), Expect = 4e-62
 Identities = 142/191 (74%), Positives = 165/191 (86%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           YTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+
Sbjct: 1   YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLV 60

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
            KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+
Sbjct: 61  VKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVI 120

Query: 167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 226
            HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF
Sbjct: 121 EHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGF 180

Query: 227 DQNISRFNMGQ 237
             +  RFN+ Q
Sbjct: 181 SGSTERFNLVQ 191


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  168 bits (426), Expect = 3e-53
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 1/185 (0%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKP 109
           LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 229
                F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  + 
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKA 183

Query: 230 ISRFN 234
            +R +
Sbjct: 184 TNRLH 188


>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 167

 Score = 28.1 bits (62), Expect = 0.67
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLC-----I 180
           H +V    +  + +++ L  GV+  +  G  G   G++S+   L+      +       +
Sbjct: 84  HIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWML 143

Query: 181 GIGNPPGKMDMKAYLLQKFSPIER 204
              NP     + A   ++  P  +
Sbjct: 144 NYSNP---AAIVAEATRRLRPNSK 164


>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
           [TaxId: 1396]}
          Length = 417

 Score = 26.8 bits (59), Expect = 2.9
 Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 19/95 (20%)

Query: 23  KRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKY---HGTRHN----------- 68
           K      +  H           V    W+     +  + +    GT +            
Sbjct: 81  KMIPI--ISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVI 138

Query: 69  --VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGE 101
                E+    A A +   + I +K  +  G  GE
Sbjct: 139 RKEYGELYTAFAAAMKPYKDVI-AKIYLSGGPAGE 172


>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB),
           N-terminal domain {Chicken (Gallus gallus), C-rel
           [TaxId: 9031]}
          Length = 175

 Score = 25.2 bits (55), Expect = 6.3
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 15  PRGPPFPQKRQVST------RLCVHASLPADNGGFKVEYTP 49
           P   P  Q   +        RLC  A LP ++G + +   P
Sbjct: 122 PFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHGNYTLALPP 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 923,092
Number of extensions: 42597
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 8
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)