BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026077
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 64 KFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSK 123
K VN + M ++KL G L L+ ++S + + L+KE + + F P+E +K K
Sbjct: 5 KVFVNRIINMRKIKLIG--LDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFK 62
Query: 124 PYHDHVFVFSIVD 136
D ++D
Sbjct: 63 FNFDDAIRGLVID 75
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 355 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 412
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 413 GTHPIHLHLVSFRVLD 428
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PSV+ + + LKL G + RP+L ++ D + K +I+ R
Sbjct: 359 PSVQH--ERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 121 KSKPYHDHVFVFSIVD 136
+ P H H+ F ++D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,402,605
Number of Sequences: 62578
Number of extensions: 286620
Number of successful extensions: 456
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 12
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)