BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026077
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 233 bits (594), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 16/244 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ L+PH K D K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK+TGN LK SRPLL+F F + H+ L+KE++IQIF TP+ H
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KS+P+ DHVF F+I+D+ IWFRN+QI E D LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
F GSFGGPTLYENP Y SPN R + + A KY +K + K +K+ E L D
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTILPHDPT 303
Query: 239 ADMW 242
AD++
Sbjct: 304 ADVF 307
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 16/244 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ L+PH K D K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK+TGN LK SRPLL+F F + H+ L+KE++IQIF TP+ H
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KS+P+ DHVF F+I+D+ IWFRN+QI E D LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
F GSFGGPTLYENP Y SPN R + + A KY +K + K +K+ E L D
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTLLPHDPT 303
Query: 239 ADMW 242
AD++
Sbjct: 304 ADVF 307
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 161/244 (65%), Gaps = 16/244 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ L+PH K D K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK+TGN LK SRPLL+F F + H+ L+KE++IQI TP+ H
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQILSTPRYHP 196
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KS+P+ DHVF F+I+D+ IWFRN+QI E D LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
F GSFGGPTLYENP Y SPN R + + A KY +K + K +K+ E L D
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYREKQQVKDVQKLRKKEPKTLLPHDPT 303
Query: 239 ADMW 242
AD++
Sbjct: 304 ADVF 307
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 160/244 (65%), Gaps = 16/244 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ L+PH K D K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK+TGN LK SRPLL+F F H+ L+KE +IQIF TP+ H
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHP 196
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KS+P+ DHVF F+I+D+ IWFRN+QI E D LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
F GSFGGPTLYENP Y SPN R + + A KY ++ + K +K+ E L D
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRERQQVKDVQKLRKKEPKTILPHDPT 303
Query: 239 ADMW 242
AD++
Sbjct: 304 ADVF 307
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 231 bits (588), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/225 (50%), Positives = 152/225 (67%), Gaps = 14/225 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ L+PH K D K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 77 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 135
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK+TGN LK SRPLL+F F H+ L+KE +IQIF TP+ H
Sbjct: 136 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHP 195
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KS+P+ DHVF F+I+D+ IWFRN+QI E D LVE+GPRF LN IKI
Sbjct: 196 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 242
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRK 225
F GSFGGPTLYENP Y SPN R + + A KY +K + K +K
Sbjct: 243 FQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYREKQQVKDVQK 287
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 231 bits (588), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 18/241 (7%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ SL+PH + + K++ K K +NE+ E+K+C+ C++FE +K +DLY+W++ SP G
Sbjct: 71 MQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG 129
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS KFLV +HT+ ELK++GN LK SRP+L+F F ++ + L+KE++ QIFGTP+ H
Sbjct: 130 PSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHP 189
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
+S+P+ DH+F FSI D+ IWFRNYQI E D LVE+GPRF LN IKI
Sbjct: 190 RSQPFVDHIFTFSIADNRIWFRNYQII----EED---------AALVEIGPRFVLNLIKI 236
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSN----PLEPD 236
F GSFGGPTLYENP Y SPN R + + A K +K + K +K+ + + P++P
Sbjct: 237 FKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKEKQQVKEVQKLKKEEDRPVIPVDPT 296
Query: 237 E 237
E
Sbjct: 297 E 297
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2
Length = 291
Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 4/239 (1%)
Query: 3 NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
++ LLPH +K+ K++ K LNE+ EL +C++ LFFE RKH+DLYLW++K PNGP+
Sbjct: 51 DLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPT 109
Query: 63 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
+KF + +HTM+EL TGN LK SRP+L+F F H++LIKE+++ FG P RKS
Sbjct: 110 IKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKS 169
Query: 123 KPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA-RGGLDKMTLVEVGPRFCLNPIKIF 181
KP+ DHV FSIVDD IW R Y+I+ H+ +K G + ++LVE+GPRF + I I
Sbjct: 170 KPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILIL 227
Query: 182 GGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
GSFGGP +YEN YVSPN +RA K+ A + + +A RK+ N L D ++
Sbjct: 228 EGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 154/240 (64%), Gaps = 8/240 (3%)
Query: 3 NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
++VS++PH KKD+K+++K + LNEL EL +C++ FFE R+ +DLYL +A++PNGP+
Sbjct: 63 DLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPT 121
Query: 63 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
VKF V +HTM+EL +TGN LK SRP+L+F F H K++KE++ Q FG PK R+S
Sbjct: 122 VKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRS 181
Query: 123 KPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG 182
KP+ D V +I D IWFRNY+I ++S D +TL+E+GPRF + I I
Sbjct: 182 KPFIDRVCTLTIADGKIWFRNYEIRENEDKSK-------DPVTLIEIGPRFVMTIINILE 234
Query: 183 GSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMW 242
GSFGGP +Y+N +VS +RA + A +Y + ++K R++ N + D +++
Sbjct: 235 GSFGGPVIYKNDTFVSSTMVRAAIRNQAAQRYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium
discoideum GN=bxdc2 PE=3 SV=1
Length = 326
Score = 214 bits (545), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 10/237 (4%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M +++SL+PH KK++K++ + + + +NE E+KSC+ + F+ RK D +LWMAK+P G
Sbjct: 93 MADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAILFDVRKGTDCFLWMAKTPLG 151
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
P+VKF + VHT++EL++TGN LK SRP L F +F + H +LIKE+I QI+ TPK H
Sbjct: 152 PTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQIYSTPKGHV 211
Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
KSKP+ DHVF F D IWFRNYQI+ + D + L E+GPR ++ KI
Sbjct: 212 KSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL---------LTEIGPRMIMHIDKI 262
Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE 237
F FGG LY NP YVSPN R+ K +KA KY K+ K + + + + +EP E
Sbjct: 263 FSDGFGGSVLYSNPNYVSPNNTRSDHKLSKANKYIKRKYQKGKAEERQKISFIEPSE 319
>sp|Q9VZE6|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster
GN=CG11583 PE=2 SV=2
Length = 359
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 19/235 (8%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSP-- 58
M ++ +L+PH + ++K+E +S + +NE+ E+K C+ + FE R+ +DLY+W++ +
Sbjct: 68 MKDIKTLMPHHRPESKME-RSKTLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGS 126
Query: 59 NGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKE 118
GPS KFL+ +HTM ELK+TGN L+ SRPLL+F S F + H KL+KE+ +Q + P
Sbjct: 127 TGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNH 186
Query: 119 HRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPI 178
H KS+P+ DHVF F+ +D IWFRN+QI GGL EVGPR+ +NP+
Sbjct: 187 HPKSQPFVDHVFTFTYLDKRIWFRNFQIL--------SEDGGLS-----EVGPRYVMNPV 233
Query: 179 KIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPL 233
KIF GSF G T++ENP YVSP++ R + KK KY +V+ K + HE + P+
Sbjct: 234 KIFDGSFTGKTIWENPDYVSPSKQRQVLKKAAKDKYVNRVEQKVK---HEATRPI 285
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 144/223 (64%), Gaps = 15/223 (6%)
Query: 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
M ++ LLPH K D+K++ + S LNE+ E+K+C+ ++FE RK KD YLWM+ G
Sbjct: 81 MKDIKDLLPHAKGDSKLDQQKSLN-VLNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKG 139
Query: 61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
PS+KFLV+ VHTM+ELK++GN L+ASRP+L+F F K KLIK +++Q GTP H
Sbjct: 140 PSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQTLGTPHHHP 199
Query: 121 KSKPYHDHVFVFSIVD-DHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIK 179
+S+P+ DHVF FS+ + D IWFRN+QI +ES + L EVGPRF L ++
Sbjct: 200 RSQPFVDHVFNFSVGEGDKIWFRNFQIV---DES----------LQLQEVGPRFVLEMVR 246
Query: 180 IFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKT 222
+F GSF G LY+NP YVSPN IR +K + K++ K
Sbjct: 247 LFAGSFEGAVLYDNPNYVSPNVIRREHRKGQHSYIEKQLAVKA 289
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 164 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTR 223
+ L E+GPR L +KI G G L+ S +I+ALEK ++A K++ K +
Sbjct: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEK-----RHAAKMRLKEQ 380
Query: 224 RKMHELSN 231
RK + N
Sbjct: 381 RKKEQEEN 388
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 164 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTR 223
+ L E+GPR L +KI G G L+ S +I+ALEK ++A K++ K +
Sbjct: 326 IKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEK-----RHAAKMRLKEQ 380
Query: 224 RKMHELSN 231
R+ + N
Sbjct: 381 RRKEQEEN 388
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 164 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQI----------RALEKKNK 210
+ L+E+GPR L IKI + GG LY + + S +I RAL++K K
Sbjct: 287 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQSRALKEKRK 343
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 35 SCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSS 94
S +F E R + D L + P GP+ F + V ++ G + P L F +
Sbjct: 128 STDLIIFTETRGNPDGML-VCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDN 185
Query: 95 NFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESD 154
K H ++ +F PK P + FS +D+I FR++ V E+D
Sbjct: 186 LNSKLGH--RFTTILKHLFPVPK------PDSKRIITFSNSEDYISFRHH---VYKTEND 234
Query: 155 KVARGGLDKMTLVEVGPRFCLNPIKIFGGSF 185
++ L E GPRF L P +I G+
Sbjct: 235 -------GEVELTEAGPRFELKPYQIKLGTL 258
>sp|Q8CV14|SPEE_OCEIH Probable spermidine synthase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=speE PE=3
SV=1
Length = 512
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 10 HCKKDNKVEAKSSKGATLNELVELKSCSSCLFFE-CRKHKDLYLWMAKSPNGPSVKFLVN 68
+N+ + ++GA ++E VE+K+ + F E + D+ L PN S +N
Sbjct: 326 ELANENRHLLEINEGALMDEKVEVKNMDAFQFLEDTSEWYDVILVDLPDPNNES----LN 381
Query: 69 AVHTMEELKLTGNHLKASRPLLTFSSN--FGKDAHWKL 104
++T E L NHLK L+ +++ F ++ +W +
Sbjct: 382 KLYTKEFYSLVRNHLKPEGTLMVQATSPVFAREVYWTI 419
>sp|Q6F8J3|HEM1_ACIAD Glutamyl-tRNA reductase OS=Acinetobacter sp. (strain ADP1) GN=hemA
PE=3 SV=1
Length = 431
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 19 AKSSKGATLNELVELKSCSSCLFFECRKHKDLYL-WMAKSPNGPSVKFLVNAVHTMEELK 77
A+ A LN++V + +C+ + +H D+ L W+A++ NG +K L++ V+ E+ +
Sbjct: 33 AQQRNHAHLNDMVVVSTCNRTEVYAMTEHADILLNWLAQT-NGIDIKQLLHHVYRYEDAQ 91
Query: 78 LTGNHLKASRPL 89
+ ++ + L
Sbjct: 92 AVTHLMRVASGL 103
>sp|D6Y1N8|MSHC_THEBD L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside
ligase OS=Thermobispora bispora (strain ATCC 19993 / DSM
43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)
GN=mshC PE=3 SV=1
Length = 403
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 75 ELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSI 134
++ T N PLL + G D W+ + + I++F T E + P D+V V +
Sbjct: 75 DVHYTQNTTDVDDPLLERAQAIGVD--WRELADREIELFRTDMEALRILPPRDYVAVTEV 132
Query: 135 VDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRF 173
+DD ++ V E R G D V P+F
Sbjct: 133 IDDIA-----EVIVRLMERGATYRIGDDVYFSVAAAPKF 166
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 127 DHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 175
DHV + + VDD I FR+Y + S + K+ L EVGP F +
Sbjct: 186 DHVVIMTAVDDKILFRHYTTIFSPSGSK------IPKVDLKEVGPSFDI 228
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2
Length = 387
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 5 VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSC-LFFECRKHKDLYLWMAKSPNGPS 62
V + C+ +K+ A + EL KSC+ L F C+KH++L+ + P+ P+
Sbjct: 39 VKSIARCRCVSKLWASILRLPYFTELYLTKSCARPRLLFACQKHRELFFFSTPQPHNPN 97
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 58 PNGPSVKFLVNAVHTMEELKLTGNHLKASRP---LLTFSSNFGKDAHWKLIKEMIIQIFG 114
PNGP+ F ++ V ++K + RP L F++ G + M+ +F
Sbjct: 257 PNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG-----LTVGRMLGALFH 311
Query: 115 TPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFC 174
E R + F D+I+FR H+ + G ++ L E+GPRF
Sbjct: 312 HDPEFRGRR-----AVTFHNQRDYIFFR-------HHRYEFTKEG--KRVKLRELGPRFT 357
Query: 175 LNPIKIFGGSFGGPT 189
L + G+F T
Sbjct: 358 LKLRSLQEGTFDSKT 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,357,308
Number of Sequences: 539616
Number of extensions: 4081333
Number of successful extensions: 9207
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9167
Number of HSP's gapped (non-prelim): 28
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)