Query 026077
Match_columns 244
No_of_seqs 157 out of 761
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2971 RNA-binding protein re 100.0 8.7E-72 1.9E-76 485.6 17.2 229 1-243 68-297 (299)
2 COG5154 BRX1 RNA-binding prote 100.0 6.7E-66 1.5E-70 439.3 17.1 235 1-243 49-283 (283)
3 KOG2963 RNA-binding protein re 100.0 9.6E-50 2.1E-54 360.4 19.5 218 2-222 45-344 (405)
4 PF04427 Brix: Brix domain; I 100.0 7.2E-40 1.6E-44 278.4 6.0 173 1-180 15-191 (191)
5 smart00879 Brix Brix domain. T 100.0 3.9E-34 8.4E-39 239.8 17.2 161 1-175 16-180 (180)
6 KOG2781 U3 small nucleolar rib 100.0 9.4E-33 2E-37 240.4 16.6 180 2-203 102-284 (290)
7 KOG2780 Ribosome biogenesis pr 100.0 4.7E-32 1E-36 238.5 13.3 172 2-193 116-290 (302)
8 KOG3031 Protein required for b 99.9 1E-27 2.3E-32 212.2 8.6 172 1-182 46-228 (307)
9 COG5106 RPF2 Uncharacterized c 99.7 9.6E-18 2.1E-22 146.6 6.6 158 17-181 60-234 (316)
10 COG2136 IMP4 Predicted exosome 99.6 2.5E-14 5.4E-19 122.8 13.2 161 2-183 21-187 (191)
11 PRK03972 ribosomal biogenesis 99.5 2E-12 4.4E-17 112.0 16.3 163 1-184 18-194 (208)
12 PRK00933 ribosomal biogenesis 61.6 25 0.00054 29.7 5.9 78 3-90 19-96 (165)
13 PRK10178 D-alanyl-D-alanine di 46.4 33 0.00071 29.5 4.3 49 163-211 7-56 (184)
14 KOG1416 tRNA(1-methyladenosine 31.4 24 0.00052 34.4 1.2 78 85-206 379-456 (475)
15 PF05508 Ran-binding: RanGTP-b 28.8 35 0.00076 31.6 1.8 21 166-186 186-206 (302)
16 PTZ00399 cysteinyl-tRNA-synthe 27.8 91 0.002 31.9 4.7 29 165-204 527-555 (651)
17 PHA01076 putative encapsidatio 20.7 83 0.0018 28.9 2.5 57 51-112 77-139 (378)
No 1
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-72 Score=485.56 Aligned_cols=229 Identities=68% Similarity=1.096 Sum_probs=219.8
Q ss_pred CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccC
Q 026077 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTG 80 (244)
Q Consensus 1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~g 80 (244)
|+|+..||||+++++|++++.++. .|+++|++++|+.++||+++|++|+||||++.|+|||++|.|+|+|||+|++++|
T Consensus 68 m~di~~Llph~k~dsk~d~~k~l~-~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~Elkmtg 146 (299)
T KOG2971|consen 68 MKDISSLLPHSKKDSKLDRKKKLG-VLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTG 146 (299)
T ss_pred HHHHHHhcccccccchhhhcchHH-HHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCcc
Confidence 789999999999999999888885 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCC
Q 026077 81 NHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGG 160 (244)
Q Consensus 81 n~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g 160 (244)
||++||+|+|+||.+|++.|||+++|++|+++|+.|..|++|+||+|||++|+|.||+||||+|||...
T Consensus 147 N~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~----------- 215 (299)
T KOG2971|consen 147 NCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE----------- 215 (299)
T ss_pred ccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred cccceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhcCCCCCCCh-hh
Q 026077 161 LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE-FA 239 (244)
Q Consensus 161 ~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 239 (244)
+.+.|+||||||+|++++|++|+|+|++||+|+.|+||+.+|++.|+.++.+| +|++++.+|+.|+.++++++|| ++
T Consensus 216 -ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~~l~~d~vf~ 293 (299)
T KOG2971|consen 216 -EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALENVLEEDPVFA 293 (299)
T ss_pred -cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcCCCCCCchhh
Confidence 35899999999999999999999999999999999999999999999999999 8899999999999999999999 55
Q ss_pred hccc
Q 026077 240 DMWK 243 (244)
Q Consensus 240 ~~f~ 243 (244)
++|.
T Consensus 294 ~~~~ 297 (299)
T KOG2971|consen 294 DMAK 297 (299)
T ss_pred hhhc
Confidence 5554
No 2
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-66 Score=439.31 Aligned_cols=235 Identities=42% Similarity=0.751 Sum_probs=225.3
Q ss_pred CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccC
Q 026077 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTG 80 (244)
Q Consensus 1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~g 80 (244)
|+||..|+||++++.|||.|+++. .|+++|+.++|++++||+++|++++|||+++.|+|||++|+++|.|||+|+.++|
T Consensus 49 ~~Dls~l~phskke~KlD~kk~l~-qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGptvkF~~~NlhTMdelNftg 127 (283)
T COG5154 49 MKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTG 127 (283)
T ss_pred HHHHHHhCcccccccccchhhhHH-HHHHHHHHhcCCceEEEeecccccceeeeccCCCCCeEEEEEeccchHhhcCCcc
Confidence 689999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCC
Q 026077 81 NHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGG 160 (244)
Q Consensus 81 n~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g 160 (244)
||++||+|.|+||+.|++.||++.+|+++++.|..|+..+.|+||+|||++|++.||+||+|.|.|..... .+
T Consensus 128 N~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWvR~YeI~re~e-------d~ 200 (283)
T COG5154 128 NSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENE-------DK 200 (283)
T ss_pred ccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEEEEEeeccccc-------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999953211 12
Q ss_pred cccceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhcCCCCCCChhhh
Q 026077 161 LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240 (244)
Q Consensus 161 ~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
.++|+|+||||||+|++++|.+|+|+|++||.|..|+|++.+|++.+.++++.+..|++...+|+.+.+++++|+||||+
T Consensus 201 ~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~~~R~es~~er~vr~~~nvi~~dpl~n 280 (283)
T COG5154 201 SKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLFARKESNLERQVRAQQNVIPEDPLDN 280 (283)
T ss_pred cccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 026077 241 MWK 243 (244)
Q Consensus 241 ~f~ 243 (244)
||.
T Consensus 281 ~f~ 283 (283)
T COG5154 281 VFA 283 (283)
T ss_pred hcC
Confidence 995
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-50 Score=360.37 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=183.7
Q ss_pred ccccccC-CCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhcc-
Q 026077 2 LNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLT- 79 (244)
Q Consensus 2 ~Dl~~l~-P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~- 79 (244)
.|||+|| |||+..+|..++|+++ +....|.-.|+||+++|+.+.. .++|.|+|+|.|||++|+|..|++.+|+...
T Consensus 45 ~DlR~iMeP~TA~~LkerK~N~iK-Dfv~~~gplGVTH~l~lskt~~-nlslki~R~PqGPTLtFkV~qYsLardV~~~q 122 (405)
T KOG2963|consen 45 LDLRRIMEPHTASNLKERKRNKLK-DFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQGPTLTFKVHQYSLARDVVSLQ 122 (405)
T ss_pred HHHHHhhCcchhhHHHHHhhhhhh-hHHhhcccccceEEEEEecccC-ceeEEEEecCCCCceEEEeeehhhHHHHHHHH
Confidence 5999998 9999999998888543 3333444456999999999986 6999999999999999999999999998753
Q ss_pred -----CCCCCCCCcEEEEcCCCCCc--hhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEE--eCCEEEEEEEEEeccc
Q 026077 80 -----GNHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSI--VDDHIWFRNYQITVPH 150 (244)
Q Consensus 80 -----gn~~~~s~PlLvf~~~F~~~--~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~--~~~~I~fRhY~I~~~~ 150 (244)
.|...-++|+||+| +|++. +|++|+..|||+|||+++++++++..|+||++++| .++.|.||||.|.+.+
T Consensus 123 krp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllinyn~dt~eIdmRHysI~vvp 201 (405)
T KOG2963|consen 123 KRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVP 201 (405)
T ss_pred hCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEecCCCCCeeeeeeeEEEEEe
Confidence 22233499999999 99975 89999999999999999999999999999999999 5677999999999988
Q ss_pred CCCc--------------ccccC------------------------------------------------------Ccc
Q 026077 151 NESD--------------KVARG------------------------------------------------------GLD 162 (244)
Q Consensus 151 ~~~~--------------~~~~~------------------------------------------------------g~~ 162 (244)
+|.+ .+||. .++
T Consensus 202 VGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~eveL~q~~~s~g~~~~qks 281 (405)
T KOG2963|consen 202 VGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKEEVELPQPKASRGNQPPQKS 281 (405)
T ss_pred cccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchhhhhccccccccCCCccccc
Confidence 8765 23540 045
Q ss_pred cceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHH---hhhHHHHHHHHH
Q 026077 163 KMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNK---AGKYAKKVKAKT 222 (244)
Q Consensus 163 ~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~---~~~~~~~~~~~~ 222 (244)
.|+|+||||||||+|+||+||.|+|.||||.++.+|++|+.++.+..+ ++|.+++++|++
T Consensus 282 aikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkkeQ~e 344 (405)
T KOG2963|consen 282 AIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKKEQEE 344 (405)
T ss_pred ceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999988865433 345555555544
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=7.2e-40 Score=278.38 Aligned_cols=173 Identities=38% Similarity=0.587 Sum_probs=64.8
Q ss_pred CccccccC-CCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhcc
Q 026077 1 MLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLT 79 (244)
Q Consensus 1 m~Dl~~l~-P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~ 79 (244)
|+||+.++ ||+.+..|. +.+.+. ++.++|...+|++++++++++++|.+|||+++|+|||++|+|+||++++|++..
T Consensus 15 ~~DL~~l~~p~s~~~~r~-~~~~l~-~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I~~~~~~~~~~~~ 92 (191)
T PF04427_consen 15 MKDLRSLFPPNSKKLNRK-KKNSLK-DLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSIENYKLMKDIKSS 92 (191)
T ss_dssp HHHHHTTS-TTEEE---T-T---HH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEEEEEE-HHHHT--
T ss_pred HHHHHHHcCCCeEEEeCC-CCCchH-HHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEEEeEEEhhHhccc
Confidence 57999999 888874433 222454 799999999999999999998889999999999999999999999999999876
Q ss_pred CCCCCCCCcEEEEcCCCCC--chhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCE-EEEEEEEEecccCCCccc
Q 026077 80 GNHLKASRPLLTFSSNFGK--DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRNYQITVPHNESDKV 156 (244)
Q Consensus 80 gn~~~~s~PlLvf~~~F~~--~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~-I~fRhY~I~~~~~~~~~~ 156 (244)
.....+++|+|||+ ||.. .++++++++||++|||++.++.+.++++||||+|++.+|. |||||| |..+ +. +.
T Consensus 93 ~~~~~~~~P~lif~-g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y-i~~~--~~-~~ 167 (191)
T PF04427_consen 93 SKRPKGSRPLLIFN-GFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY-IFKS--GS-KN 167 (191)
T ss_dssp -----S---EEEEE------------------------------------------------------------------
T ss_pred ccCCCCCCeEEEEE-ecccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--cc-cc
Confidence 55445789999999 6654 4899999999999999999999999999999999999888 999999 7322 21 12
Q ss_pred ccCCcccceEEEecccceeeEEEe
Q 026077 157 ARGGLDKMTLVEVGPRFCLNPIKI 180 (244)
Q Consensus 157 ~~~g~~~v~L~EIGPRf~L~l~kI 180 (244)
++.....|+|+||||||+|+|+||
T Consensus 168 ~~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 168 PKKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp ------------------------
T ss_pred ccccccccccccccccccccccCC
Confidence 210113589999999999999987
No 5
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=3.9e-34 Score=239.81 Aligned_cols=161 Identities=39% Similarity=0.565 Sum_probs=138.6
Q ss_pred CccccccCCCceecccccccCcccccHHHHHhhc-CCceEEEEEec-CCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhc
Q 026077 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKL 78 (244)
Q Consensus 1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~-~~s~~i~~~~~-kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~ 78 (244)
++||+.++|++.+..+.+ +.+ ..+.++|..+ +|+++++++.+ +++|.+||++++|+|||+.|.+.++++++|+..
T Consensus 16 ~~dL~~~~~~~~~~~r~~--~~~-~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~i~~v~~~~~~~~ 92 (180)
T smart00879 16 AKDLRRLFPPSTKINRGK--NKL-NELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKG 92 (180)
T ss_pred HHHHHHHCCCcEeecccC--ccH-HHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEEEECcccHhhhhh
Confidence 579999998887744332 334 3688888887 78999999886 667899999999999999999999999999987
Q ss_pred --cCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCccc
Q 026077 79 --TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 156 (244)
Q Consensus 79 --~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~ 156 (244)
.+|+..+++|+|+|+ +|....+ +++++||+++|+.++.+.+++++++||++|++.+|.||||||+|.+..
T Consensus 93 ~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i~~~~------ 164 (180)
T smart00879 93 FKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGK------ 164 (180)
T ss_pred hhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEEEccC------
Confidence 578888899999999 7776555 789999999999999999999999999999999999999999997511
Q ss_pred ccCCcccceEEEeccccee
Q 026077 157 ARGGLDKMTLVEVGPRFCL 175 (244)
Q Consensus 157 ~~~g~~~v~L~EIGPRf~L 175 (244)
+.++++|+||||||+|
T Consensus 165 ---~~~~v~l~eiGPr~~l 180 (180)
T smart00879 165 ---KKPRVELQEIGPRFTL 180 (180)
T ss_pred ---CCCceEEEEecCCccC
Confidence 1247999999999986
No 6
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=9.4e-33 Score=240.37 Aligned_cols=180 Identities=20% Similarity=0.298 Sum_probs=159.8
Q ss_pred ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCC
Q 026077 2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGN 81 (244)
Q Consensus 2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn 81 (244)
++|+.++||+.. +++++...-.|.+.|..+|+|.+|+++++++.|..|.||++|.|||+.|.+.|+.+.+|+...|+
T Consensus 102 KelkLvfPNaqr---~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGPTa~Fsl~nvVmRhdip~~G~ 178 (290)
T KOG2781|consen 102 KELKLVFPNAQR---LNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGPTAFFSLHNVVMRHDIPDIGT 178 (290)
T ss_pred HhheEeccChhh---hcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCCceEeeeeeeeeccccccccc
Confidence 578889999997 88887643368888999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCCc
Q 026077 82 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 161 (244)
Q Consensus 82 ~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g~ 161 (244)
.+- ..|+|||| ||++..+. +++++|..+||+|... .+|||+|.+.+|.|.||||.|.... .
T Consensus 179 msE-~~phlIfd-Nf~t~lG~-Rv~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIsFRhhvy~~~~----------~ 239 (290)
T KOG2781|consen 179 MSE-QKPHLIFD-NFTTKLGK-RVKTILKHLFPVPKDD------SKRVVTFANRNDYISFRHHVYKKTD----------G 239 (290)
T ss_pred ccc-cCceEEec-cccchHHH-HHHHHHHHhCCCCcCC------cccEEEEecCCceEEEEEEEEecCC----------C
Confidence 653 79999999 99998875 7999999999998876 6999999999999999999996432 1
Q ss_pred ccceEEEecccceeeEEEeecCCCc---cceeeecCCCCCHHHHH
Q 026077 162 DKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQIR 203 (244)
Q Consensus 162 ~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~~~~~~s~~e~~ 203 (244)
+.++|.|+||||.|+|+-|..|++. +++.|....|+.....|
T Consensus 240 k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR 284 (290)
T KOG2781|consen 240 KEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKR 284 (290)
T ss_pred ceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhh
Confidence 4699999999999999999999984 99999999998765443
No 7
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=99.98 E-value=4.7e-32 Score=238.46 Aligned_cols=172 Identities=21% Similarity=0.348 Sum_probs=147.6
Q ss_pred ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCC
Q 026077 2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGN 81 (244)
Q Consensus 2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn 81 (244)
..|+.++||+.. +...+-.++ .|.++|...++|+++++...++.+..|.|+++|+|||++|.+.||.+.+|++..|+
T Consensus 116 ~eL~~iiPNs~~--~~R~~~~vk-~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~Fkls~~~~~kdi~k~g~ 192 (302)
T KOG2780|consen 116 SELLDIIPNSTV--KKRDNYTVK-SIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAYFKLSNVVLTKDIKKHGR 192 (302)
T ss_pred HHHHHhCCCceE--EecCCchHH-HHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceEEEeecccchhhhhhcCC
Confidence 467788999977 233334455 78899999999999998766556789999999999999999999999999999995
Q ss_pred CCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCCc
Q 026077 82 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 161 (244)
Q Consensus 82 ~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g~ 161 (244)
.- +..|.|++| ||++..++ .+.+||++|||.++.-+ .+||++|+++.|.|+||||+|.+++.+.
T Consensus 193 ~t-~h~PElIlN-NFtTrlG~-~v~r~f~sLfp~~p~f~-----gRrvvtFhnQrD~IfFRhhRY~Fkee~~-------- 256 (302)
T KOG2780|consen 193 PT-SHIPELILN-NFTTRLGM-TVGRLFASLFPHDPQFT-----GRRVVTFHNQRDYIFFRHHRYEFKEEEI-------- 256 (302)
T ss_pred cc-cccchhhhh-cccchhhH-HHHHHHHHhCCCCcccc-----ceeEEEEEecCceEEEEEEEEeeccccc--------
Confidence 43 489999999 99999988 68999999999987543 6999999999999999999999876442
Q ss_pred ccceEEEecccceeeEEEeecCCCc---cceeeec
Q 026077 162 DKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYEN 193 (244)
Q Consensus 162 ~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~~ 193 (244)
++.|+|+||||||+|.+.++|.|+ |+.-|.-
T Consensus 257 -kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~ 290 (302)
T KOG2780|consen 257 -KVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVH 290 (302)
T ss_pred -ccchhhcCCceeeeehhhhhccccccceeeeeee
Confidence 689999999999999999999995 7777754
No 8
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-27 Score=212.19 Aligned_cols=172 Identities=17% Similarity=0.317 Sum_probs=153.3
Q ss_pred Ccccccc-CCCceecccccccCccc-----ccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeE
Q 026077 1 MLNVVSL-LPHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVH 71 (244)
Q Consensus 1 m~Dl~~l-~P~s~~~~K~~~k~~l~-----~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~ 71 (244)
|.||-.| -|.+.. ++++|+++ ..|..|.++.+|+.+++.++++++|.+|+|||++++ +++++.|+||.
T Consensus 46 m~dl~alKKp~~i~---~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~yk 122 (307)
T KOG3031|consen 46 MKDLYALKKPLEIR---YNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYK 122 (307)
T ss_pred HHHHHHhccCceee---eccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhhhhh
Confidence 4566666 377665 67777664 358899999999999999999999999999999999 99999999999
Q ss_pred ehHhhhccCCCCCCCCcEEEEcC-CCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCE-EEEEEEEEecc
Q 026077 72 TMEELKLTGNHLKASRPLLTFSS-NFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRNYQITVP 149 (244)
Q Consensus 72 ~~~dlk~~gn~~~~s~PlLvf~~-~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~-I~fRhY~I~~~ 149 (244)
+.+|++.++ +..|+.|+|+|.+ .|++.+.++.++++|.++|.++.++.+.+.+++||++|+..++. |+||+|.+..+
T Consensus 123 slsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~lklk 201 (307)
T KOG3031|consen 123 SLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRLKLK 201 (307)
T ss_pred hhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeeeeee
Confidence 999998854 6678999999995 99999999999999999999999999999999999999997665 99999999999
Q ss_pred cCCCcccccCCcccceEEEecccceeeEEEeec
Q 026077 150 HNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG 182 (244)
Q Consensus 150 ~~~~~~~~~~g~~~v~L~EIGPRf~L~l~kI~~ 182 (244)
.++.. +| +++|+||||+++|++.++.-
T Consensus 202 Ks~~~-~P-----RiELeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 202 KSGTR-TP-----RIELEEMGPSLDFEIRRTKL 228 (307)
T ss_pred eccCC-CC-----ceehhhcCCceeEEEEeccC
Confidence 88763 44 89999999999999999873
No 9
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=9.6e-18 Score=146.58 Aligned_cols=158 Identities=17% Similarity=0.328 Sum_probs=136.1
Q ss_pred ccccCccc-----ccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeEehHhhhccCCCCCCCCc
Q 026077 17 VEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRP 88 (244)
Q Consensus 17 ~~~k~~l~-----~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~~~~dlk~~gn~~~~s~P 88 (244)
+.+|++++ ..|+.|.++++|+..++|++.+|+..+|.++|.++. ++++|.|.+|.+..|+..+|-.+ |..|
T Consensus 60 f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~-g~Kp 138 (316)
T COG5106 60 FIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPEL-GMKP 138 (316)
T ss_pred cccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCcc-CCce
Confidence 56666654 358889999999999999999998999999999998 89999999999999999877654 6999
Q ss_pred EEEEcC-CCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEe----CC----EEEEEEEEEecccCCCcccccC
Q 026077 89 LLTFSS-NFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV----DD----HIWFRNYQITVPHNESDKVARG 159 (244)
Q Consensus 89 lLvf~~-~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~----~~----~I~fRhY~I~~~~~~~~~~~~~ 159 (244)
.++|.+ +|+..|.++.++++|.++|.+.........+..+||+-+.+ |. .+.||.|....-++.. .+|
T Consensus 139 mv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~~-~lp-- 215 (316)
T COG5106 139 MVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKT-NLP-- 215 (316)
T ss_pred EEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecccccccC-CCC--
Confidence 999985 99999999999999999999988777778889999999973 32 2789999987544333 255
Q ss_pred CcccceEEEecccceeeEEEee
Q 026077 160 GLDKMTLVEVGPRFCLNPIKIF 181 (244)
Q Consensus 160 g~~~v~L~EIGPRf~L~l~kI~ 181 (244)
+++|+|+|||+++++.+++
T Consensus 216 ---r~elee~GPrldf~i~R~~ 234 (316)
T COG5106 216 ---RLELEECGPRLDFEIVRSY 234 (316)
T ss_pred ---ceehhhcccceeeEEEeec
Confidence 8999999999999999998
No 10
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.58 E-value=2.5e-14 Score=122.78 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=136.2
Q ss_pred ccccccCCCceecccccc-cCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeC-CCCCeEEEEeeeeEehHhhhcc
Q 026077 2 LNVVSLLPHCKKDNKVEA-KSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNGPSVKFLVNAVHTMEELKLT 79 (244)
Q Consensus 2 ~Dl~~l~P~s~~~~K~~~-k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~-P~GPT~~F~V~n~~~~~dlk~~ 79 (244)
+||..++|++.. +.+ +.++. .|.+.|...|.+.+++..+.++.|..|.+.++ |.||++.|.+.|+.+.+++...
T Consensus 21 k~L~~~lp~~~~---~~rg~~~~~-el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~f~l~~v~l~re~~~~ 96 (191)
T COG2136 21 KDLSRVLPNAYF---LRRGKKSII-ELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVL 96 (191)
T ss_pred HHHHHhCCcceE---EecCccchh-HHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEEEEEecceEEEecccc
Confidence 688999999988 333 23343 68888999999999999999999999999999 9999999999999999999887
Q ss_pred CCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhh----CCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcc
Q 026077 80 GNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDK 155 (244)
Q Consensus 80 gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~l----F~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~ 155 (244)
++....+.|.++++ +|.+..+...+.++|..+ |+.-... ....|+.+...++.+.||.+...+..
T Consensus 97 ~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-----~~~~v~~~~~~~~f~~~~~~~~~~~~----- 165 (191)
T COG2136 97 GPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNPAW-----EHELVATGANKGDFKSLRRHRRVFEE----- 165 (191)
T ss_pred CCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCccc-----ceeeeeeccccceEEEEEeeeeEeee-----
Confidence 77444589999999 999988877899999999 6554432 25788999999999999998876542
Q ss_pred cccCCcccceEEEecccceeeEEEeecC
Q 026077 156 VARGGLDKMTLVEVGPRFCLNPIKIFGG 183 (244)
Q Consensus 156 ~~~~g~~~v~L~EIGPRf~L~l~kI~~G 183 (244)
..+.+.|+||||+|++.++++|
T Consensus 166 ------~~~~~~~vgp~~~~r~~~~~~g 187 (191)
T COG2136 166 ------DGIGLEEVGPRLTLRLWRMEDG 187 (191)
T ss_pred ------eeeeEEEeCceeeeehhhhhhc
Confidence 3688999999999999999988
No 11
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.48 E-value=2e-12 Score=111.99 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=120.2
Q ss_pred CccccccCCCceeccccccc-CcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeEehHhh
Q 026077 1 MLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVHTMEEL 76 (244)
Q Consensus 1 m~Dl~~l~P~s~~~~K~~~k-~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~~~~dl 76 (244)
++||..++||+.+ +.++ .+++ +|.+.|...|.+++|++.+.++.|..|.|+++|+| ||++|+|.|+.+.+|+
T Consensus 18 ~keL~~v~Pns~~---i~RGk~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei 93 (208)
T PRK03972 18 GHDLERVFPNSLY---LTRGKKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREM 93 (208)
T ss_pred HHHHHHhCCCCEE---EecCCccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHc
Confidence 3689999999987 5555 4454 67778888899999999999999999999999855 5999999999999999
Q ss_pred --hccCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCc--CCCC------CCCEEEEEEEeCCEEEEEEEEE
Q 026077 77 --KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR--KSKP------YHDHVFVFSIVDDHIWFRNYQI 146 (244)
Q Consensus 77 --k~~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~--~~~~------~~~rVi~F~~~~~~I~fRhY~I 146 (244)
+..|... .+.|++|.+ +|.+.+++......+-..++.+.+.+ .|+. +.+-|+++.----..-+--|++
T Consensus 94 ~~~~~~~~s-~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~~~~~~~~ 171 (208)
T PRK03972 94 GFRNLRPIR-EDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGMAVNFYRL 171 (208)
T ss_pred ccCCCCCcc-ccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCceEEEEEEe
Confidence 4455544 489999999 99999877666667888888876665 3322 3356666654333335555666
Q ss_pred ecccCCCcccccCCcccceEEEecccceeeEEEeecCC
Q 026077 147 TVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS 184 (244)
Q Consensus 147 ~~~~~~~~~~~~~g~~~v~L~EIGPRf~L~l~kI~~G~ 184 (244)
.... -.-+||-+-.+....++|-
T Consensus 172 ~~~~---------------~~~~~~~~~~~~~~~~~~~ 194 (208)
T PRK03972 172 DVTK---------------ERPVGPLIFVKIWIMEDGR 194 (208)
T ss_pred cccc---------------ccccCCcEEEEEEEeccCc
Confidence 4321 2345888877777666653
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=61.60 E-value=25 Score=29.67 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=51.5
Q ss_pred cccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCCC
Q 026077 3 NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNH 82 (244)
Q Consensus 3 Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn~ 82 (244)
+|...+ ++.+ +.|++ ..|.+++..++..+++++++.++.|..|.+...-+-+.+.+.+. +....+.. +..
T Consensus 19 eLa~~l-n~~y---v~Rgk---~Sl~eL~~~~~~~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~~-v~~~~~~~--~~~ 88 (165)
T PRK00933 19 DLARFL-NCKY---VNRGK---MSLQELLEECEARYLLIIGEYKGNPGALKFYDVEGNKLLSYRLS-VKLQREIS--GPV 88 (165)
T ss_pred HHHHHh-CCEE---EccCC---ccHHHHHHHhccCcEEEEECCCCCCceEEEEECCCCEEEEEEEE-eeeecccC--cce
Confidence 445555 6655 34443 25888887777889999999888899999999877776666553 44444432 223
Q ss_pred CCCCCcEE
Q 026077 83 LKASRPLL 90 (244)
Q Consensus 83 ~~~s~PlL 90 (244)
+++.+|.+
T Consensus 89 ~~~~~p~~ 96 (165)
T PRK00933 89 FKNRRPIK 96 (165)
T ss_pred eecCCCcc
Confidence 45566754
No 13
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=46.45 E-value=33 Score=29.55 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=40.8
Q ss_pred cceEEEecccceeeEEEeecCCCccceeeec-CCCCCHHHHHHHHHHHHh
Q 026077 163 KMTLVEVGPRFCLNPIKIFGGSFGGPTLYEN-PFYVSPNQIRALEKKNKA 211 (244)
Q Consensus 163 ~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~-~~~~s~~e~~~~~k~~~~ 211 (244)
-|.+.++-|.+.+.+.---..-|.|.+||.. .-+.++...+++.+.++.
T Consensus 7 ~V~i~~~~p~i~~DlrYat~~NF~g~~iY~~~~c~l~~~aA~aL~~a~~~ 56 (184)
T PRK10178 7 LVEITVAFHGVEIDLKYATADNLTGKPIYREARCLLHKDAEAALRKAVSI 56 (184)
T ss_pred cEEeeecCCCCEEEeeeccCCCcCCCccccCCeEEECHHHHHHHHHHHHH
Confidence 4789999999999999999999999999964 567788777777665553
No 14
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=31.44 E-value=24 Score=34.42 Aligned_cols=78 Identities=21% Similarity=0.432 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCCcccc
Q 026077 85 ASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKM 164 (244)
Q Consensus 85 ~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g~~~v 164 (244)
-|+|++|+. .|.+ .|+..|.-... -.+||..... .+|+|.||+ +|+ +
T Consensus 379 pSrp~viy~-q~ke---------~L~e~~~~L~~-------~~~vinL~it--e~wlR~YQV---------LP~----R- 425 (475)
T KOG1416|consen 379 PSRPIVIYS-QYKE---------PLQECYHKLYQ-------RGKVINLSIT--ETWLRPYQV---------LPD----R- 425 (475)
T ss_pred CCCCEEEee-chhH---------HHHHHHHHHhh-------cCceEeeeec--hhhccceee---------cCC----C-
Confidence 389999998 5543 22222222111 2467777764 489999999 442 1
Q ss_pred eEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHH
Q 026077 165 TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALE 206 (244)
Q Consensus 165 ~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~ 206 (244)
.-|-|+|. .++|=+||.-.+-.+|.-+....
T Consensus 426 ----tHP~M~ms-------g~gGylLsGikv~~~~~~~~~~~ 456 (475)
T KOG1416|consen 426 ----THPLMTMS-------GGGGYLLSGIKVITAPEPLSENA 456 (475)
T ss_pred ----CCcceEee-------cCCceEEeeeEEecCccchhhcc
Confidence 14556665 45888888877777766554433
No 15
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=28.80 E-value=35 Score=31.62 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.1
Q ss_pred EEEecccceeeEEEeecCCCc
Q 026077 166 LVEVGPRFCLNPIKIFGGSFG 186 (244)
Q Consensus 166 L~EIGPRf~L~l~kI~~G~f~ 186 (244)
-+-|||-|+|.++.||.|.-.
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr 206 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSR 206 (302)
T ss_pred ccccCCcEEEEeeheeccccc
Confidence 355899999999999977753
No 16
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=27.81 E-value=91 Score=31.88 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=17.8
Q ss_pred eEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHH
Q 026077 165 TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRA 204 (244)
Q Consensus 165 ~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~ 204 (244)
.|.++| +.|++.. +|.++|.. ++++++.+
T Consensus 527 ~L~~~G-------i~l~D~~-~g~~~~~~---~~~~~~~~ 555 (651)
T PTZ00399 527 WLPNLG-------IRIEDKP-DGPSVWKL---DDKEELQR 555 (651)
T ss_pred HHHHCC-------CEEEEcC-CCceEEEE---CCHHHHHH
Confidence 466666 3345444 67788975 57776543
No 17
>PHA01076 putative encapsidation protein
Probab=20.69 E-value=83 Score=28.89 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=42.7
Q ss_pred eEEEEeCCCCCeEEEEeeeeEehHhhhccCCCCCCCCcEEEEcCCCCC------chhHHHHHHHHHhh
Q 026077 51 YLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK------DAHWKLIKEMIIQI 112 (244)
Q Consensus 51 ~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn~~~~s~PlLvf~~~F~~------~~~lklik~~f~~l 112 (244)
||.|. ..|- --|-|++.....|++.+++.++ ..|+++.| .|=+ ..+|..++.+..++
T Consensus 77 YL~I~--~~~k-Ei~vIT~LN~AtDLK~~S~~Lk-~YPiiiYD-EFL~L~~DY~~~E~~KL~TI~~SI 139 (378)
T PHA01076 77 YLAII--YQDK-EIGVITDLNSATDLKYHSNFLK-HYPIIIYD-EFLALEDDYLIDEWDKLKTIYESI 139 (378)
T ss_pred EEEEE--EcCc-EEEEEecCCchhhHHHHHHHHh-cCCeEEeh-hhhhccchhhhhHHHHHHHHHHHH
Confidence 56554 3443 3478999999999999999887 99999999 7754 24666777777665
Done!