Query 026077
Match_columns 244
No_of_seqs 157 out of 761
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.8 3.7E-21 1.3E-25 166.8 11.7 113 1-119 52-168 (217)
2 1w94_A MIL, probable BRIX-doma 98.3 8.5E-07 2.9E-11 72.9 6.2 67 2-77 19-85 (156)
3 1f32_A Major pepsin inhibitor 32.7 34 0.0012 27.1 3.2 46 178-223 73-123 (149)
4 4a74_A DNA repair and recombin 10.1 3.5E+02 0.012 20.9 4.7 18 26-43 161-178 (231)
5 3sjd_D Golgi to ER traffic pro 8.9 2.9E+02 0.01 17.5 2.9 18 197-214 14-31 (46)
6 1r44_A D-alanyl-D-alanine dipe 8.7 78 0.0027 26.3 0.2 51 163-213 5-58 (202)
7 1n0w_A DNA repair protein RAD5 7.9 3.2E+02 0.011 21.4 3.6 18 26-43 155-172 (243)
8 2cvh_A DNA repair and recombin 7.4 4.6E+02 0.016 20.0 4.4 17 27-43 138-154 (220)
9 2kkc_A Sequestosome-1; P62, PB 7.3 6.7E+02 0.023 18.2 4.9 32 101-141 43-77 (102)
10 1dvo_A FINO, fertility inhibit 6.9 2.2E+02 0.0075 22.6 2.0 32 165-210 104-135 (152)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.85 E-value=3.7e-21 Score=166.82 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=101.1
Q ss_pred CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---C-eEEEEeeeeEehHhh
Q 026077 1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---P-SVKFLVNAVHTMEEL 76 (244)
Q Consensus 1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---P-T~~F~V~n~~~~~dl 76 (244)
++||..++||+.+.. +.+.+++ +|.+.|...+|+++++++++++.|.+|||+++|+| | |++|+|.|+++++|+
T Consensus 52 akeL~~~lPns~~i~--Rgk~sLk-eL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei 128 (217)
T 2cxh_A 52 VKDLSATIPGAFRFT--RGHYSME-ELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRER 128 (217)
T ss_dssp HHHHHTTSTTEEECC--CTTCCHH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCCEEEEEEEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEee--cCCcCHH-HHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCCCCCCcEEEEEEeeEEehhhh
Confidence 478999999998743 2345665 78888999999999999999988999999999999 9 999999999999999
Q ss_pred hccCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCC
Q 026077 77 KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEH 119 (244)
Q Consensus 77 k~~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~ 119 (244)
+.+|||+.+++|+|+ + +|++. +++++++||+++||.|...
T Consensus 129 ~~~g~~~~~~rP~L~-~-nF~t~-~g~~i~~~f~~lFp~P~~~ 168 (217)
T 2cxh_A 129 RWGLPSLRGGEVLVA-R-PLDSG-VAVEFADAFVIAFHARLKP 168 (217)
T ss_dssp TCCCCCCCSCCEEEE-E-ESSSS-THHHHHHHHHHHHCCBSSC
T ss_pred ccCCCccCCCCceEE-e-eecCc-hHHHHHHHHHHHcCCCCCC
Confidence 999999999999999 7 99987 6789999999999998763
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=98.31 E-value=8.5e-07 Score=72.91 Aligned_cols=67 Identities=6% Similarity=0.009 Sum_probs=50.5
Q ss_pred ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhh
Q 026077 2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELK 77 (244)
Q Consensus 2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk 77 (244)
++|..++ ++.+ +.|++. .|.++++.+... ++++..+++.|..|.++++|+|||++|++ |+.+.+|+.
T Consensus 19 keLa~~l-n~~~---v~Rgk~---sl~~L~~~~~~~-~iVV~e~rg~P~~l~i~hlp~gpt~~f~~-nv~l~~~~~ 85 (156)
T 1w94_A 19 QRLSRIM-GWRY---INRGKM---SLRDVLIEARGP-VAVVSERHGNPARITFLDERGGERGYILF-NPSFEMKKP 85 (156)
T ss_dssp HHHHHHH-TCEE---CCCTTC---CHHHHHHHHSSC-EEEEEEETTEEEEEEEECTTSCEEEEEEE-EEEECSSCC
T ss_pred HHHHHHh-CCEE---EeeCCc---CHHHHHHhcCCC-EEEEEcCCCCCCeEEEEeCCCCCEEEEEE-ceEEcccCc
Confidence 3556666 7766 555542 577877776555 55555565668999999999999999998 999999975
No 3
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=32.67 E-value=34 Score=27.14 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=28.9
Q ss_pred EEeecCCC-ccceeeecCCC---CCHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 026077 178 IKIFGGSF-GGPTLYENPFY---VSPNQIRALEK-KNKAGKYAKKVKAKTR 223 (244)
Q Consensus 178 ~kI~~G~f-~G~vly~~~~~---~s~~e~~~~~k-~~~~~~~~~~~~~~~~ 223 (244)
.-+++|+. .|++||-+-.| .|+.|+++++. .++...|++|++.-+-
T Consensus 73 qy~FdGCvVqnNKlY~gg~~~RdLT~~Eq~EL~~y~~k~~a~eer~e~~~~ 123 (149)
T 1f32_A 73 MFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQENQPP 123 (149)
T ss_dssp EEEETTEEEETTEEEETTEEEEECCHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEEEeeeEEEcCEEEECCEeeccCCHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34788876 69999998877 68999988876 3334556655544433
No 4
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=10.12 E-value=3.5e+02 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=10.2
Q ss_pred cHHHHHhhcCCceEEEEE
Q 026077 26 TLNELVELKSCSSCLFFE 43 (244)
Q Consensus 26 ~l~~~~~~~~~s~~i~~~ 43 (244)
.|.+++...|++-+++-+
T Consensus 161 ~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp HHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEee
Confidence 455666666766554443
No 5
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=8.91 E-value=2.9e+02 Score=17.46 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHhhhH
Q 026077 197 VSPNQIRALEKKNKAGKY 214 (244)
Q Consensus 197 ~s~~e~~~~~k~~~~~~~ 214 (244)
.+++|.+++.+.+++.|.
T Consensus 14 lsa~EkaRLrRERR~aKi 31 (46)
T 3sjd_D 14 LTEAEKRRLLRERRQKKF 31 (46)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 456666666655554443
No 6
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=8.74 E-value=78 Score=26.28 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=41.4
Q ss_pred cceEEEecccceeeEEEeecCCCcccee--ee-cCCCCCHHHHHHHHHHHHhhh
Q 026077 163 KMTLVEVGPRFCLNPIKIFGGSFGGPTL--YE-NPFYVSPNQIRALEKKNKAGK 213 (244)
Q Consensus 163 ~v~L~EIGPRf~L~l~kI~~G~f~G~vl--y~-~~~~~s~~e~~~~~k~~~~~~ 213 (244)
-|.|.++-|.+.+.+..--..-|.|.++ |. +.-+.++...+++.+.++.++
T Consensus 5 ~V~~~~~~p~i~~dlrYat~~Nf~g~~v~gY~~~~~~Lr~~aa~aL~~aq~~L~ 58 (202)
T 1r44_A 5 FTFLDEIVHGVRWDAKYATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAA 58 (202)
T ss_dssp EEEGGGTSTTCEECCGGGSSCSTTSSCCTTBCSSSCEEEHHHHHHHHHHHHHTT
T ss_pred ceEeeccCCCceEEcccccCcccCCCcCCCcCCCcEEECHHHHHHHHHHHHHHH
Confidence 3667888899999999999999999999 86 556788888888887776543
No 7
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=7.87 E-value=3.2e+02 Score=21.38 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=9.6
Q ss_pred cHHHHHhhcCCceEEEEE
Q 026077 26 TLNELVELKSCSSCLFFE 43 (244)
Q Consensus 26 ~l~~~~~~~~~s~~i~~~ 43 (244)
.|..++...||+-+++-+
T Consensus 155 ~l~~~~~~~~~tvi~~~h 172 (243)
T 1n0w_A 155 MLLRLADEFGVAVVITNQ 172 (243)
T ss_dssp HHHHHHHHHCCEEEEEC-
T ss_pred HHHHHHHHcCCEEEEEee
Confidence 355566666776444433
No 8
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=7.42 E-value=4.6e+02 Score=19.95 Aligned_cols=17 Identities=6% Similarity=-0.036 Sum_probs=10.8
Q ss_pred HHHHHhhcCCceEEEEE
Q 026077 27 LNELVELKSCSSCLFFE 43 (244)
Q Consensus 27 l~~~~~~~~~s~~i~~~ 43 (244)
|..++...+|+-+++-+
T Consensus 138 L~~l~~~~~~~vi~~~h 154 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQ 154 (220)
T ss_dssp HHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHcCCEEEEEee
Confidence 66677777877554443
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=7.34 E-value=6.7e+02 Score=18.23 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEe---CCEEEE
Q 026077 101 HWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV---DDHIWF 141 (244)
Q Consensus 101 ~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~---~~~I~f 141 (244)
.+..+..+++++||...... +++.|. +|.|.|
T Consensus 43 s~~~L~~~V~~lFp~l~~~~---------f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPGG---------FQAHYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSSC---------EEEEEECTTCCEEEE
T ss_pred cHHHHHHHHHHHccccCCCc---------EEEEEECCCCCEEEe
Confidence 46688999999999877532 556663 355655
No 10
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial conjugation, X-RAY crystallography, transcription; 2.00A {Escherichia coli} SCOP: a.136.1.1
Probab=6.89 E-value=2.2e+02 Score=22.56 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=23.0
Q ss_pred eEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHH
Q 026077 165 TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNK 210 (244)
Q Consensus 165 ~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~ 210 (244)
.++|=++|++|. |...|+ +|+++..-+.++..
T Consensus 104 a~~~Ga~R~DLd------G~p~g~--------Vt~ee~~~A~~~L~ 135 (152)
T 1dvo_A 104 AMKAGACRYDTE------GYVTEH--------ISQEEEVYAAERLD 135 (152)
T ss_dssp HCCTTCEEECTT------SCEEEE--------CCHHHHHHHHHHHH
T ss_pred HHhCCCeeECCC------CCCCCc--------CCHHHHHHHHHHHH
Confidence 367889999985 766766 68888776665544
Done!