AmiGO: BLAST Results


BLAST match view associations BLAST with U11/U12-31K U11/U12-31K U11/U12-31K AT3G10400	protein from Arabidopsis thaliana	4.8e-64
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Canis lupus familiaris	5.9e-44
BLAST match view associations BLAST with Zcrb1 Zcrb1 Zcrb1 zinc finger CCHC-type and RNA binding motif 1	gene from Rattus norvegicus	5.9e-44
BLAST match view associations BLAST with Zcrb1 Zcrb1 Zcrb1 zinc finger CCHC-type and RNA binding motif 1	protein from Mus musculus	5.9e-44
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Gallus gallus	5.9e-44
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Bos taurus	5.2e-43
BLAST match view associations BLAST with zcrb1 zcrb1 zcrb1 zinc finger CCHC-type and RNA binding motif 1	gene_product from Danio rerio	8.5e-43
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	5.9e-29
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	8.4e-26
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Sus scrofa	1.2e-17
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Sus scrofa	1.0e-13
BLAST match view associations BLAST with Srsf7 Srsf7 Srsf7 serine/arginine-rich splicing factor 7	protein from Mus musculus	1.6e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich splicing factor 7	protein from Bos taurus	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Canis lupus familiaris	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich-splicing factor 7	protein from Homo sapiens	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich splicing factor 7	protein from Homo sapiens	4.4e-13
BLAST match view associations BLAST with Srsf7 Srsf7 Srsf7 serine/arginine-rich splicing factor 7	gene from Rattus norvegicus	4.4e-13
BLAST match view associations BLAST with RSZ21 RSZ21 RSZ21 RS-containing zinc finger protein 21	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Gallus gallus	5.0e-12
BLAST match view associations BLAST with srsf7b srsf7b srsf7b serine/arginine-rich splicing factor 7b	gene_product from Danio rerio	6.4e-12
BLAST match view associations BLAST with srsf7a srsf7a srsf7a serine/arginine-rich splicing factor 7a	gene_product from Danio rerio	2.3e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	7.4e-11
BLAST match view associations BLAST with RSZ23 RSZ23 RSZ23 Serine/arginine-rich splicing factor RSZ23	protein from Oryza sativa Japonica Group	9.4e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	9.4e-11
BLAST match view associations BLAST with LOC100859609 LOC100859609 LOC100859609 Uncharacterized protein	protein from Gallus gallus	1.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.2e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.2e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	3.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.2e-10
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	3.6e-10
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.1e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	4.1e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	4.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	5.2e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.2e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	5.2e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	5.2e-10
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA binding protein	protein from Coxiella burnetii RSA 493	6.6e-10
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA-binding protein	protein from Coxiella burnetii RSA 493	6.6e-10
BLAST match view associations BLAST with LOC100859609 LOC100859609 LOC100859609 Uncharacterized protein	protein from Gallus gallus	8.6e-10
BLAST match view associations BLAST with rbm4.1 rbm4.1 rbm4.1 RNA binding motif protein 4.1	gene_product from Danio rerio	1.3e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with Pabpn1l-b Pabpn1l-b Pabpn1l-b Embryonic polyadenylate-binding protein 2-B	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.8e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.8e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-09
BLAST match view associations BLAST with RSZ22a RSZ22a RSZ22a RS-containing zinc finger protein 22a	protein from Arabidopsis thaliana	2.9e-09
BLAST match view associations BLAST with RSZ22 RSZ22 RSZ22 RS-containing zinc finger protein 22	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with rbm14b rbm14b rbm14b RNA binding motif protein 14b	gene_product from Danio rerio	4.4e-09
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	5.0e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	5.8e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with tia1l tia1l tia1l cytotoxic granule-associated RNA binding protein 1, like	gene_product from Danio rerio	6.3e-09
BLAST match view associations BLAST with Pabpn1l-a Pabpn1l-a Pabpn1l-a Embryonic polyadenylate-binding protein 2-A	protein from Xenopus laevis	6.6e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	7.6e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.2e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.5e-09
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	9.8e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA binding motif protein, X-linked	gene_product from Danio rerio	1.0e-08
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.0e-08
BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	1.2e-08
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	1.2e-08
BLAST match view associations BLAST with orf19.1389 orf19.1389 orf19.1389	gene_product from Candida albicans	1.6e-08
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.6e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026078
        (244 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe...   553  4.8e-64   2
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"...   432  5.9e-44   2
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA...   432  5.9e-44   2
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and...   432  5.9e-44   2
UNIPROTKB|E1BTK3 - symbol:ZCRB1 "Uncharacterized protein"...   427  5.9e-44   2
UNIPROTKB|Q8TBF4 - symbol:ZCRB1 "Zinc finger CCHC-type an...   426  5.2e-43   2
UNIPROTKB|Q56JZ7 - symbol:ZCRB1 "Zinc finger CCHC-type an...   423  5.2e-43   2
ZFIN|ZDB-GENE-041210-114 - symbol:zcrb1 "zinc finger CCHC...   426  8.5e-43   2
UNIPROTKB|G3V1V1 - symbol:ZCRB1 "Zinc finger CCHC-type an...   292  5.9e-29   2
UNIPROTKB|F8VXY6 - symbol:ZCRB1 "Zinc finger CCHC-type an...   292  8.4e-26   1
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"...   215  1.2e-17   1
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"...   178  1.0e-13   1
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli...   176  1.6e-13   1
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl...   172  4.4e-13   1
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"...   172  4.4e-13   1
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl...   172  4.4e-13   1
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl...   172  4.4e-13   1
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing...   172  4.4e-13   1
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1...   172  4.4e-13   1
TAIR|locus:2199837 - symbol:RSZ21 "RS-containing zinc fin...   166  1.9e-12   1
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"...   162  5.0e-12   1
ZFIN|ZDB-GENE-050913-95 - symbol:srsf7 "serine/arginine-r...   161  6.4e-12   1
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ...   157  2.3e-11   1
UNIPROTKB|F1LZA3 - symbol:F1LZA3 "Uncharacterized protein...   156  3.3e-11   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   154  3.5e-11   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   151  7.4e-11   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   151  7.4e-11   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   151  7.4e-11   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   151  7.4e-11   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  7.4e-11   1
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl...   150  9.4e-11   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   150  9.4e-11   1
UNIPROTKB|E1BVX5 - symbol:LOC100859609 "Uncharacterized p...   149  1.2e-10   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   149  1.2e-10   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   149  1.2e-10   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   149  1.2e-10   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  1.7e-10   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   147  2.0e-10   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   151  2.0e-10   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   146  2.5e-10   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   145  3.2e-10   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   145  3.2e-10   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   145  3.2e-10   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   145  3.2e-10   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   145  3.2e-10   1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic...   149  3.6e-10   1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi...   144  4.1e-10   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   136  4.1e-10   2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   136  4.1e-10   2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   136  4.1e-10   2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   136  4.1e-10   2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   136  4.1e-10   2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   136  4.1e-10   2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   136  4.2e-10   2
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   143  5.2e-10   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   143  5.2e-10   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   143  5.2e-10   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   135  5.2e-10   2
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ...   142  6.6e-10   1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"...   142  6.6e-10   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   141  8.4e-10   1
UNIPROTKB|E1BRL9 - symbol:LOC100859609 "Uncharacterized p...   141  8.6e-10   1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo...   147  1.3e-09   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   139  1.4e-09   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   139  1.4e-09   1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl...   139  1.4e-09   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   138  1.8e-09   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   138  1.8e-09   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   137  2.2e-09   1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   137  2.2e-09   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   137  2.2e-09   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   137  2.2e-09   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   136  2.9e-09   1
UNIPROTKB|F1M8R2 - symbol:F1M8R2 "Uncharacterized protein...   136  2.9e-09   1
TAIR|locus:2046638 - symbol:RSZ22a "RS-containing zinc fi...   136  2.9e-09   1
TAIR|locus:2124799 - symbol:RSZ22 "RS-containing zinc fin...   135  3.6e-09   1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo...   144  4.4e-09   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   141  5.0e-09   1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein...   140  5.8e-09   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   133  5.9e-09   1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu...   139  6.3e-09   1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl...   133  6.6e-09   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   132  7.6e-09   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   136  9.2e-09   1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   136  9.5e-09   1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot...   138  9.8e-09   1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif...   138  1.0e-08   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   136  1.0e-08   1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding...   136  1.2e-08   1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl...   130  1.2e-08   1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   130  1.2e-08   1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha...   130  1.2e-08   1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ...   129  1.6e-08   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   129  1.6e-08   1

WARNING:  Descriptions of 641 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2075860 [details] [associations]
            symbol:U11/U12-31K "U11/U12-31K" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0051302
            "regulation of cell division" evidence=IMP] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
            GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
            GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
            EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
            ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
            EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
            TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
            ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
        Length = 261

 Score = 553 (199.7 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 109/169 (64%), Positives = 122/169 (72%)

Query:    17 TFYYRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPSKSTVYVSNLDYALTNSDL 76
             TFYYRY                                LAPSKST+YVSNLD++LTNSD+
Sbjct:    16 TFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGG--LAPSKSTLYVSNLDFSLTNSDI 73

Query:    77 HTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136
             HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ +V   DA  AAR++  K+LNGR +  SIA
Sbjct:    74 HTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133

Query:   137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMPKK 185
             ADNGRAS FIKKRVYKDKSRCYECGDEGHLSYECP+NQLGPRERP P K
Sbjct:   134 ADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPPK 182

 Score = 118 (46.6 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 26/44 (59%), Positives = 31/44 (70%)

Query:   203 WASVVDGGAEERLLLMGENESEEKR--KKAKRVSYFSDESDEEE 244
             WASVVD  A ERL      E EE+R  +K K+VSYFSDESD+E+
Sbjct:   218 WASVVDNEAGERLRKREAEEEEERRMKRKEKKVSYFSDESDDED 261


>UNIPROTKB|J9NZ20 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
            RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
            Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
            Uniprot:J9NZ20
        Length = 217

 Score = 432 (157.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 80/131 (61%), Positives = 103/131 (78%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
             L+  RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 LNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 48 (22.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query:   219 GENESEEKRK-KAKRVSYFSDESD 241
             G + S++ R+ + K+ +YFSDE +
Sbjct:   191 GPSTSDDSRRPRIKKSTYFSDEEE 214

 Score = 44 (20.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K K+      E + EE
Sbjct:   124 MLGEREPPKKKEKKKKKKIPEPEEEIEE 151


>RGD|1309851 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
            RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
            SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
            KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
            Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
        Length = 217

 Score = 432 (157.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 80/131 (61%), Positives = 103/131 (78%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
             L+  RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 LNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 48 (22.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query:   219 GENESEEKRK-KAKRVSYFSDESD 241
             G + S++ R+ + K+ +YFSDE +
Sbjct:   191 GPSTSDDSRRPRIKKSAYFSDEEE 214

 Score = 44 (20.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K K+      E + EE
Sbjct:   124 MLGEREPPKKKEKKKKKKVPEPEEEIEE 151


>MGI|MGI:1914447 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
            EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
            UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
            STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
            Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
            KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
            ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
            Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
        Length = 217

 Score = 432 (157.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 80/131 (61%), Positives = 103/131 (78%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
             L+  RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 LNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 48 (22.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query:   219 GENESEEKRK-KAKRVSYFSDESD 241
             G + S++ R+ + K+ +YFSDE +
Sbjct:   191 GPSTSDDSRRPRIKKSAYFSDEEE 214

 Score = 43 (20.2 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K K+      E + EE
Sbjct:   124 MLGEREPPKKKEKKKKRKLPEPEEEIEE 151


>UNIPROTKB|E1BTK3 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
            RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
            Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
            NextBio:20821039 Uniprot:E1BTK3
        Length = 216

 Score = 427 (155.4 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 79/131 (60%), Positives = 103/131 (78%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL +ALTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
              + +RA++ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 QNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 53 (23.7 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K KR      E  EEE
Sbjct:   124 MLGEREPPKKKEKKKRKKVVEPEEIEEE 151

 Score = 49 (22.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query:   219 GENE--SEEKRKKAKRVSYFSDESD 241
             GE+    + KR + K+ +YFSDE +
Sbjct:   189 GESSVSDDSKRPRIKKSAYFSDEEE 213


>UNIPROTKB|Q8TBF4 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
            KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
            EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
            IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
            PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
            PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
            Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
            GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
            neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
            PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
            NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
            Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
        Length = 217

 Score = 426 (155.0 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 79/131 (60%), Positives = 102/131 (77%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
              +  RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 45 (20.9 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query:   224 EEKRKKAKRVSYFSDESD 241
             + +R + K+ +YFSDE +
Sbjct:   197 DSRRPRIKKSTYFSDEEE 214

 Score = 43 (20.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K K+      E + EE
Sbjct:   124 MLGEREPPKKKEKKKKKKAPEPEEEIEE 151


>UNIPROTKB|Q56JZ7 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
            EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
            UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
            Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
            HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
            OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
        Length = 217

 Score = 423 (154.0 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
              +  RAI+ K L GR + ASIA DNGRA+ FI++R Y DKS+CYECG+ GHLSY CP+N 
Sbjct:    65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124

Query:   175 LGPRERPMPKK 185
             LG RE P  K+
Sbjct:   125 LGEREPPKKKE 135

 Score = 48 (22.0 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query:   219 GENESEEKRK-KAKRVSYFSDESD 241
             G + S++ R+ + K+ +YFSDE +
Sbjct:   191 GPSTSDDSRRPRIKKSTYFSDEEE 214

 Score = 44 (20.5 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             ++GE E  +K++K K+      E + EE
Sbjct:   124 MLGEREPPKKKEKKKKKKIPEPEEEIEE 151


>ZFIN|ZDB-GENE-041210-114 [details] [associations]
            symbol:zcrb1 "zinc finger CCHC-type and RNA binding
            motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
            HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
            OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
            RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
            SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
            eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
            Bgee:Q5SP50 Uniprot:Q5SP50
        Length = 218

 Score = 426 (155.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 80/131 (61%), Positives = 103/131 (78%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSN+ ++LTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+    A
Sbjct:     5 LAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESA 64

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
              + +R+++ K L GR V ASIA DNGRA+ FI+KR Y DKS+CYECG+EGHLSY CP+N 
Sbjct:    65 YNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGEEGHLSYACPKNL 124

Query:   175 LGPRERPMPKK 185
             LG RE P PKK
Sbjct:   125 LGEREPP-PKK 134

 Score = 43 (20.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query:   223 SEEKRK-KAKRVSYFSDESD 241
             SE+  K + K+ +YFSDE +
Sbjct:   196 SEDTHKPRIKKSAYFSDEEE 215

 Score = 42 (19.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query:   217 LMGENESEEKRKKAKRVSYFSDESDEEE 244
             L+GE E   K++K K+      E  E E
Sbjct:   124 LLGEREPPPKKEKKKKKKVQQPEEVEPE 151


>UNIPROTKB|G3V1V1 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA binding motif
            1, isoform CRA_b" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471111 Gene3D:4.10.60.10
            EMBL:AC079684 UniGene:Hs.496279 HGNC:HGNC:29620
            ProteinModelPortal:G3V1V1 SMR:G3V1V1 Ensembl:ENST00000552673
            ArrayExpress:G3V1V1 Bgee:G3V1V1 Uniprot:G3V1V1
        Length = 176

 Score = 292 (107.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 55/94 (58%), Positives = 69/94 (73%)

Query:    92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
             +KD+ TRKS+GVAFI F+    A +  RAI+ K L GR + ASIA DNGRA+ FI++R Y
Sbjct:     1 MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 60

Query:   152 KDKSRCYECGDEGHLSYECPRNQLGPRERPMPKK 185
              DKS+CYECG+ GHLSY CP+N LG RE P  K+
Sbjct:    61 FDKSKCYECGESGHLSYACPKNMLGEREPPKKKE 94

 Score = 45 (20.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query:   224 EEKRKKAKRVSYFSDESD 241
             + +R + K+ +YFSDE +
Sbjct:   156 DSRRPRIKKSTYFSDEEE 173


>UNIPROTKB|F8VXY6 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC079684
            HGNC:HGNC:29620 IPI:IPI01021444 ProteinModelPortal:F8VXY6
            SMR:F8VXY6 Ensembl:ENST00000552235 ArrayExpress:F8VXY6 Bgee:F8VXY6
            Uniprot:F8VXY6
        Length = 133

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%)

Query:    92 LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVY 151
             +KD+ TRKS+GVAFI F+    A +  RAI+ K L GR + ASIA DNGRA+ FI++R Y
Sbjct:     1 MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 60

Query:   152 KDKSRCYECGDEGHLSYECPRNQLGPRERPMPKK 185
              DKS+CYECG+ GHLSY CP+N LG RE P  K+
Sbjct:    61 FDKSKCYECGESGHLSYACPKNMLGEREPPKKKE 94


>UNIPROTKB|I3LLT9 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00600000084414 EMBL:CU915556
            Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
        Length = 94

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 41/70 (58%), Positives = 56/70 (80%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LAPSKSTVYVSNL ++LTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+    A
Sbjct:     5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64

Query:   115 LSAARAIHGK 124
              +  RAI+ K
Sbjct:    65 QNCTRAINNK 74


>UNIPROTKB|F1S4R5 [details] [associations]
            symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
            OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
        Length = 268

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/118 (34%), Positives = 59/118 (50%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A
Sbjct:    36 SKTKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 90

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPR 172
              R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R
Sbjct:    91 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHR 148


>MGI|MGI:1926232 [details] [associations]
            symbol:Srsf7 "serine/arginine-rich splicing factor 7"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
            SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
            HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
            KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
            EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
            EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
            IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
            RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
            ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
            STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
            Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
            UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
            Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
            GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
        Length = 267

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 42/126 (33%), Positives = 61/126 (48%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A
Sbjct:    38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 92

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQ 174
              R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R  
Sbjct:    93 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYS 152

Query:   175 LGPRER 180
                R R
Sbjct:   153 RRRRSR 158


>UNIPROTKB|Q3T106 [details] [associations]
            symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
            species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
            eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
            IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
            ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
            Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
            InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
            ArrayExpress:Q3T106 Uniprot:Q3T106
        Length = 235

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>UNIPROTKB|J9P2I8 [details] [associations]
            symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
            EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
            Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
            Uniprot:J9P2I8
        Length = 238

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>UNIPROTKB|C9JAB2 [details] [associations]
            symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
            HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
            ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
            Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
            Uniprot:C9JAB2
        Length = 235

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>UNIPROTKB|Q16629 [details] [associations]
            symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
            processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
            SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
            HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
            OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
            EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
            EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
            IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
            RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
            PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
            DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
            PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
            PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
            Ensembl:ENST00000431066 Ensembl:ENST00000443213
            Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
            GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
            neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
            PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
            NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
            Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
        Length = 238

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>RGD|1307425 [details] [associations]
            symbol:Srsf7 "serine/arginine-rich splicing factor 7"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
            NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
            UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
        Length = 157

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>UNIPROTKB|D4A720 [details] [associations]
            symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
            GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
            OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
            UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
            GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
        Length = 238

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>TAIR|locus:2199837 [details] [associations]
            symbol:RSZ21 "RS-containing zinc finger protein 21"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
            cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
            interference" evidence=RCA] [GO:0035196 "production of miRNAs
            involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
            "post-translational protein modification" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0048573 "photoperiodism, flowering" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
            GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
            GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
            ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
            IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
            RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
            SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
            EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
            KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
            PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
        Length = 187

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 46/125 (36%), Positives = 62/125 (49%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             VYV NLD  +T  +L   F  FG +  V V      R+  G AF++F    DAL A  A+
Sbjct:     4 VYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISAL 58

Query:   122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER- 180
               K  NG  V  S     GR     ++   +D S+CYECG+ GH + EC R +   R R 
Sbjct:    59 DRK--NGWRVELSHKDKGGRGGGGGRRGGIED-SKCYECGELGHFARECRRGRGSVRRRS 115

Query:   181 PMPKK 185
             P P++
Sbjct:   116 PSPRR 120


>UNIPROTKB|Q5ZMI0 [details] [associations]
            symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
            HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
            OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
            IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
            STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
            KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
            Uniprot:Q5ZMI0
        Length = 223

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 38/125 (30%), Positives = 59/125 (47%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA  A 
Sbjct:     8 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 62

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
               + GK++ G  V   ++    R S + +   +R +    RCYECG++GH +Y+C R   
Sbjct:    63 LGLDGKIICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 122

Query:   176 GPRER 180
               R R
Sbjct:   123 RRRSR 127


>ZFIN|ZDB-GENE-050913-95 [details] [associations]
            symbol:srsf7 "serine/arginine-rich splicing factor
            7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
            GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
            EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
            ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
            Uniprot:A3KNI1
        Length = 210

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 38/125 (30%), Positives = 60/125 (48%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   F  +G +  V + ++ A     G AF++F    DA  + 
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPA-----GFAFVEFEDPRDAEDSV 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFI---KKRVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S +     +R +    RCYECG++GH +Y+C R   
Sbjct:    65 RGLDGKVICGSRVRVELSTGMPRRSRYDHPPSRRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRTR 129


>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
            symbol:zgc:77155 "zgc:77155" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
            HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
            RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
            Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
            KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
        Length = 258

 Score = 157 (60.3 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 37/117 (31%), Positives = 56/117 (47%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S   VYV +L       +L   FS +G +  V V      R   G AF+++    DA  A
Sbjct:    12 SDCKVYVGDLGNGAAKGELERAFSYYGPLRSVWV-----ARNPPGFAFVEYEDARDAEDA 66

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIK--KRVYKDKSRCYECGDEGHLSYECPR 172
              + + GKVL G  V   ++    R S + +  +R +    RCY+CG+ GH +Y+C R
Sbjct:    67 VKGMDGKVLCGARVRVELSNGMSRKSRYGRPSRRQFDPNDRCYQCGETGHYAYDCYR 123


>UNIPROTKB|F1LZA3 [details] [associations]
            symbol:F1LZA3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
            Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
        Length = 262

 Score = 156 (60.0 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 39/125 (31%), Positives = 58/125 (46%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L    S +G +  V +      R   G AF++F    DA    
Sbjct:    13 ETKVYVGNLGTGAGKGELERALSYYGSLRTVWI-----ARNPPGFAFVEFEDPRDAEDLV 67

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIKK---RVYKDKSRCYECGDEGHLSYECPRNQL 175
             R + GKV+ G  V   ++    R S F +    R +    RCYECG++GH +Y+C R   
Sbjct:    68 RGLDGKVICGSGVRVELSTVMPRRSRFDRPPAHRPFNPNDRCYECGEKGHYAYDCHR--Y 125

Query:   176 GPRER 180
              P+ R
Sbjct:   126 SPQRR 130


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/99 (34%), Positives = 55/99 (55%)

Query:    56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             +PS S +++  L +++    L   FS+FG++A V +  D+ + +SRG  F+ F +  DAL
Sbjct:    38 SPS-SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
             SA  A+ GK L GR +  S A +  R    +  R+ K K
Sbjct:    97 SAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSK 135


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|Q6K9C3 [details] [associations]
            symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
            species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
            GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
            ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
            EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
            ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
            EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
            EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
            Gramene:Q6K9C3 Uniprot:Q6K9C3
        Length = 200

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 44/115 (38%), Positives = 56/115 (48%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             VYV NLD  +T  ++   F  FG +  V V      RK  G AFI F    DA  A R +
Sbjct:     4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDRRDAEDAIRDL 58

Query:   122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              GK  NG  V  S  A +GR     + R      +CYECG+ GH + EC R ++G
Sbjct:    59 DGK--NGWRVELSTKAGSGRG----RDRSGGSDMKCYECGEPGHFAREC-RLRIG 106


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 36/113 (31%), Positives = 59/113 (52%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG--DEGH 165
               A RA++G+ L+GR +    A  + R S   +   +  + R Y  G  D+G+
Sbjct:    61 SDAMRAMNGESLDGRQIRVDHAGKSARGS---RGGAFGGRGRSYSRGGGDQGY 110


>UNIPROTKB|E1BVX5 [details] [associations]
            symbol:LOC100859609 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
            EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
            IPI:IPI00821462 ProteinModelPortal:E1BVX5
            Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
        Length = 235

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/125 (28%), Positives = 58/125 (46%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA    
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAKPLL 64

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRNQL 175
             ++   +V+ G  V   ++    R S + +   +R +    RCYECG++GH +Y+C R   
Sbjct:    65 KSSKSRVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query:   176 GPRER 180
               R R
Sbjct:   125 RRRSR 129


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 150 (57.9 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGR 141
               A  A++GK ++GR +    A    R
Sbjct:    61 KDAMMAMNGKSVDGRQIRVDQAGGGDR 87


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 31/85 (36%), Positives = 47/85 (55%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  L Y  T   L   FS +G IA+V V++DR T +SRG  F+ F    DA  A  A+
Sbjct:    25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84

Query:   122 HGKVLNGRTVNASIAADNG-RASSF 145
             +GK ++GR +    A  +G R+  F
Sbjct:    85 NGKQVDGRMIRVDEAGKSGGRSGGF 109


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 151 (58.2 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSDNRSRGYRGGS 97


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTV 131
               A  A++GK ++GR +
Sbjct:    61 KDAMMAMNGKSVDGRQI 77


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/101 (34%), Positives = 53/101 (52%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  + V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSENRSRGYRGGS 97


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/101 (34%), Positives = 53/101 (52%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  + V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSENRSRGYRGGS 97


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/101 (34%), Positives = 53/101 (52%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  + V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKS 155
               A  A++GK ++GR     I  D    SS  + R Y+  S
Sbjct:    61 KDAMMAMNGKSVDGR----QIRVDQAGKSSENRSRGYRGGS 97


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 37/113 (32%), Positives = 60/113 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG--DEGH 165
              +A RA++G+ L+GR +    A  + R S       Y ++ R Y  G  D+G+
Sbjct:    61 SNAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGY-ERGRGYPRGGGDQGY 112


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG--DEGH 165
              +A RA++G+ L+GR +    A  + R +   +   +  + R Y  G  D+G+
Sbjct:    61 SNAMRAMNGESLDGRQIRVDHAGKSARGT---RGGAFGARGRGYSRGGGDQGY 110


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 149 (57.5 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             ++ V N+ +  T  DL+ LF+ +GK+  V + +DR T  SRG AF+++    +A  A   
Sbjct:    17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query:   121 IHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRER 180
             + G+V++GR +    A     A    K RV +   +              PR    P  R
Sbjct:    77 LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRR 136

Query:   181 PMPKK 185
               P++
Sbjct:   137 RSPRR 141


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 32/85 (37%), Positives = 46/85 (54%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P  S + V NL ++ +   L   FS FG+IA V ++KD A ++S+G AFIQF    DA  
Sbjct:    37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query:   117 AARAIHGKVLNGRTVNASIAADNGR 141
             A   +  ++ NGR +   IA    R
Sbjct:    97 AIETMDRRMYNGRMIYIDIAKPGKR 121


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   334 YSSGRDRVGRQERGLPPSM 352


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   335 YSSGRDRVGRQERGLPPSM 353


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   335 YSSGRDRVGRQERGLPPSM 353


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   335 YSSGRDRVGRQERGLPPSM 353


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   335 YSSGRDRVGRQERGLPPSM 353


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   335 YSSGRDRVGRQERGLPPSM 353


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 136 (52.9 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     8 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    66 AARDMNGKSLDGKAIKVEQA 85

 Score = 35 (17.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   336 YSSGRDRVGRQERGLPPSM 354


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 35/113 (30%), Positives = 57/113 (50%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  +++  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG--DEGH 165
               A R ++GK L+GR +    A    R +     R +  + R Y  G  D+G+
Sbjct:    61 SDAMRPMNGKSLDGRQIRVDHAGKLARGTRGCAFRAH-GRGRSYSRGGGDQGY 112


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  L++  T   L  +FS +G++A V V+KDR +++SRG  F+ F    DA  A  A+
Sbjct:     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67

Query:   122 HGKVLNGRTVNASIA--ADNGRASSF 145
             +GK ++GR +    A  + N R   +
Sbjct:    68 NGKSVDGRQIRVDQAGKSSNDRRGGY 93


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/88 (35%), Positives = 49/88 (55%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             S ++V  L +   +S L   F++FG++   TV+ DR T +SRG  F+ F     A +A +
Sbjct:    35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94

Query:   120 AIHGKVLNGRTVNASIAADNGRA--SSF 145
              + GK LNGR +  ++A +   A  SSF
Sbjct:    95 EMDGKELNGRQIRVNLATERSSAPRSSF 122


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 135 (52.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  + ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   332 YSSGRDRVGRQERGLPPSM 350


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV NL Y +  +DLH  FS FG I  V ++++  T +S+G AF+ +V    A+ A  A 
Sbjct:    46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104

Query:   122 HGKVLNGRTVNASIA 136
             HGK L GR++   IA
Sbjct:   105 HGKDLQGRSLVVRIA 119


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV NL Y +  +DLH  FS FG I  V ++++  T +S+G AF+ +V    A+ A  A 
Sbjct:    46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104

Query:   122 HGKVLNGRTVNASIA 136
             HGK L GR++   IA
Sbjct:   105 HGKDLQGRSLVVRIA 119


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
               A RA++G+ L+GR +    A  + R +
Sbjct:    61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89


>UNIPROTKB|E1BRL9 [details] [associations]
            symbol:LOC100859609 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
            EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
            ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
            ArrayExpress:E1BRL9 Uniprot:E1BRL9
        Length = 226

 Score = 141 (54.7 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 38/127 (29%), Positives = 60/127 (47%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS-- 116
             ++ VYV NL       +L   FS +G +  V +      R   G AF++F    DA    
Sbjct:    10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAXXXX 64

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSFIK---KRVYKDKSRCYECGDEGHLSYECPRN 173
             A++ +  KV+ G  V   ++    R S + +   +R +    RCYECG++GH +Y+C R 
Sbjct:    65 ASKPLL-KVICGSRVRVEVSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDCHRY 123

Query:   174 QLGPRER 180
                 R R
Sbjct:   124 SRRRRSR 130


>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
            symbol:rbm4.1 "RNA binding motif protein 4.1"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
            EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
            UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
            Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
            OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
            Bgee:Q6IQ97 Uniprot:Q6IQ97
        Length = 419

 Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 36/127 (28%), Positives = 60/127 (47%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             P  ST ++V N+  + TN +L   F  +G +    ++KD         AF+   ++ DA+
Sbjct:    74 PKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAM 125

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              A   +      G+ ++  ++    R +  + +R     + CY CG EGH S ECP +Q 
Sbjct:   126 EAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGER-----TGCYRCGQEGHWSKECPLDQN 180

Query:   176 GP-RERP 181
             G  RE P
Sbjct:   181 GSYREGP 187


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
               A RA++G+ L+GR +    A  + R +
Sbjct:    61 SVAMRAMNGESLDGRQIRVDHAGKSARGT 89


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/76 (36%), Positives = 47/76 (61%)

Query:    62 VYVSNLDYALTNSD-LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +++  L++  TN D L   F+ +G+I+ V V+KDR T++SRG  F+ F  + DA  A  A
Sbjct:     7 LFIGGLNFE-TNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query:   121 IHGKVLNGRTVNASIA 136
             ++GK ++GR +    A
Sbjct:    66 MNGKSVDGRQIRVDQA 81


>UNIPROTKB|Q6TY21 [details] [associations]
            symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
            2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
            GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
            PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
            GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
            KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
        Length = 218

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 41/123 (33%), Positives = 64/123 (52%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             K +VYV N+DY  T  DL   FS+ G I R+T+L D+ +   +G A+I+F +  +++ AA
Sbjct:    92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAA 150

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
              A+   V  GRT+       N    S   +  ++ + R    G+ G+  Y+  R Q  PR
Sbjct:   151 VAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPR----GNRGN--YQ--RGQR-PR 201

Query:   179 ERP 181
              RP
Sbjct:   202 GRP 204


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 26/75 (34%), Positives = 44/75 (58%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  L++      L  +FS +G+I+ V V+KDR T++SRG  F+ F    DA  A  A+
Sbjct:     7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66

Query:   122 HGKVLNGRTVNASIA 136
             +GK ++GR +    A
Sbjct:    67 NGKAVDGRQIRVDQA 81


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  L +      L T+FS +G+I  V V+KDR T++SRG  F+ F    DA  A   +
Sbjct:     8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67

Query:   122 HGKVLNGRTVNASIA--ADNGRASSF 145
             +GK ++GR +    A  + N R   +
Sbjct:    68 NGKTVDGRQIRVDQAGKSSNDRRGGY 93


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGKV 125
               A  A++GKV
Sbjct:    61 KDAMMAMNGKV 71


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/118 (30%), Positives = 58/118 (49%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I  V V+KD  TR+S+G  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172
              +A RA +G+ L+GR ++   A  + R +   +   ++     Y  G  GH SY   R
Sbjct:    61 SNAMRATNGESLDGRQIHVDHAGKSARGT---RGGAFEAHGHGYSRG-RGHQSYGSSR 114


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKR 149
             AAR ++GK L+G+ +    A      + ++  R
Sbjct:    65 AARDMNGKSLDGKAIKVEQATKPSFENVYLSPR 97


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   FS+FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
                 RA++G+ L+GR +    A  + R +
Sbjct:    61 SDVMRAMNGESLDGRQIRVDHAGKSARGT 89


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L   F +FG I+ V V+KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRAS 143
               A RA++G+ L+GR +    A  + R +
Sbjct:    61 SDAMRAMNGESLDGRQIRVDHAGKSARGT 89


>UNIPROTKB|F1M8R2 [details] [associations]
            symbol:F1M8R2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
            SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
            Uniprot:F1M8R2
        Length = 212

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 39/128 (30%), Positives = 57/128 (44%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             +S  YV NL   +   +L   FS +G +  V +      R   G AF+ F    DA  A 
Sbjct:     5 ESKGYVGNLGTGVGKGELERAFSYYGPLRTVWI-----ARNPPGFAFV-FEDPRDAEDAV 58

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIKKRV---YKDKSRCYECGDEGHLSYE---CPR 172
               + GKV+ G  V   ++    R S F +      +    RCYECG++GH +Y+   C R
Sbjct:    59 GGLGGKVICGSRVRVELSTGMPRRSRFDRPPACHPFDPNDRCYECGEQGHYAYDYHRCSR 118

Query:   173 NQLGPRER 180
              +   R R
Sbjct:   119 RRSRSRSR 126


>TAIR|locus:2046638 [details] [associations]
            symbol:RSZ22a "RS-containing zinc finger protein 22a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
            HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
            EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
            RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
            SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
            EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
            TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
            ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
        Length = 196

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 45/128 (35%), Positives = 55/128 (42%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             S VYV NLD  +T  +L   F +FG I  V V      R+  G AF+ F    DA  A R
Sbjct:     2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56

Query:   120 AIHGKVLNGRTVNASI------AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYEC-PR 172
              + GK  NG  V  S           GR      +       +CYECG+ GH + EC  R
Sbjct:    57 EVDGK--NGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR 114

Query:   173 NQLGPRER 180
                G R R
Sbjct:   115 GGSGGRRR 122


>TAIR|locus:2124799 [details] [associations]
            symbol:RSZ22 "RS-containing zinc finger protein 22"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
            "cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
            EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
            GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
            EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
            ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
            EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
            RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
            ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
            PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
            GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
            OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
        Length = 200

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 47/131 (35%), Positives = 57/131 (43%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             S VYV NLD  +T  +L   F  FG +  V V      R+  G AF+ F    DA  A R
Sbjct:     2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56

Query:   120 AIHGKVLNGRTVNASI----------AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYE 169
             A+ GK  NG  V  S             D G        R   D  +CYECG+ GH + E
Sbjct:    57 ALDGK--NGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDL-KCYECGETGHFARE 113

Query:   170 CPRNQLGPRER 180
             C RN+ G   R
Sbjct:   114 C-RNRGGTGRR 123


>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
            symbol:rbm14b "RNA binding motif protein 14b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
            KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
            IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
            KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
            Uniprot:Q6NV05
        Length = 556

 Score = 144 (55.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 41/116 (35%), Positives = 52/116 (44%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             P  ST V+V NL    T  DL  LF TFGK+            K +G AF+      DAL
Sbjct:    79 PLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECD--------KVKGYAFVHMENKEDAL 130

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECP 171
              A  A+HG    GR +  S+     + S    K+    K  C  CG +GH + ECP
Sbjct:   131 QAIEALHGTSFKGRPL--SVELSKVQPS----KQTPTGKIPCVSCGKQGHYAGECP 180


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 141 (54.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L T+F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 36/128 (28%), Positives = 59/128 (46%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G++  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
             AAR ++GK L+G+ +    A     ++   +      +SR    G  G       R Q+ 
Sbjct:    65 AARELNGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRGPPRGLRGSRGGGSSRGQMP 124

Query:   177 PRERPMPK 184
              +  P P+
Sbjct:   125 LKRGPPPR 132


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A  +  ++V  L +      L  +FS +G+I+ V V+KDR T++SRG  F+ F  I DA
Sbjct:     1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query:   115 LSAARAIHGK 124
               A  A++GK
Sbjct:    61 KDAMMAMNGK 70


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 139 (54.0 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 41/116 (35%), Positives = 57/116 (49%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   ++  D+   F+ FGKI+   V+KD AT KS+G  FI F+   DA SA + +
Sbjct:    99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158

Query:   122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
             +G+ L GR +  + A     A           KS   E     HLSYE   NQ  P
Sbjct:   159 NGQWLGGRQIRTNWATRKPSAP----------KSN-NEGASSKHLSYEEVLNQSSP 203


>UNIPROTKB|Q804A5 [details] [associations]
            symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
            2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
            GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
            ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
            KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
        Length = 218

 Score = 133 (51.9 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 40/123 (32%), Positives = 63/123 (51%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             K +VYV N+DY  T  DL   FS+ G I R+T+L D+ +   +G A+I+F +  +++ AA
Sbjct:    92 KRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAA 150

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178
               +   V  GRT+       N    S   +  ++ + R    G+ G+  Y+  R Q  PR
Sbjct:   151 VTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPR----GNRGN--YQ--RGQR-PR 201

Query:   179 ERP 181
              RP
Sbjct:   202 GRP 204


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 25/72 (34%), Positives = 44/72 (61%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             S +YV NL+Y + ++DL   F+ +G +    V+ DRAT +SRG  F++     +A +A  
Sbjct:     3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62

Query:   120 AIHGKVLNGRTV 131
              ++GK ++GR +
Sbjct:    63 GLNGKEMDGRNL 74


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 136 (52.9 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     9 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    67 AARDMNGKSLDGKAIKVEQA 86


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 136 (52.9 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 138 (53.6 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 36/128 (28%), Positives = 59/128 (46%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G++  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
             AAR ++GK L+G+ +    A     ++   +      +SR    G  G       R Q+ 
Sbjct:    65 AARELNGKALDGKPIKVEQATKPSFSAPSRRGPPPPPRSRGPPRGLRGSRGGGSSRGQMP 124

Query:   177 PRERPMPK 184
              +  P P+
Sbjct:   125 LKRGPPPR 132


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+   +   L   FS FG+I+ V ++KDR T KSRG AF+ +    DA  
Sbjct:     7 PGK--LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AAREMNGKPLDGKPIKVEQA 84


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 136 (52.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/108 (28%), Positives = 54/108 (50%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV NL Y +T+S+L  +F   G +  V ++ D+ T +SRG  F+    I +A  A +  
Sbjct:   118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query:   122 HGKVLNGRTVNASIA-ADNGRASSFIKKRVYKDKSRCYECGDEGHLSY 168
             +   + GRTV  +      G  +  ++ ++ +D +R Y   D  H  Y
Sbjct:   178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKI-RDNNRSYV--DSPHKVY 222


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/121 (30%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S    R++   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRSRSRSRSRSRSRS 131

Query:   180 R 180
             R
Sbjct:   132 R 132


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             K+ +YVS L +  T   L   F  FG +  + ++ D+   + +G AF+++    +A+ A 
Sbjct:    76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135

Query:   119 RAIHGKVLNGRTV---NASIAADNGRA 142
             + +HGK L+GR +    A   +D  RA
Sbjct:   136 QGMHGKFLDGRVIFVEEAKTRSDMSRA 162


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/76 (35%), Positives = 42/76 (55%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N  +  T  +L   FS+ G+I  V ++ DR T + RG AFI+F +   A  A   
Sbjct:     6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65

Query:   121 IHGKVLNGRTVNASIA 136
             ++G   NGR +  ++A
Sbjct:    66 MNGAEFNGRPLRVNLA 81


>CGD|CAL0003946 [details] [associations]
            symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
            RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
            KEGG:cal:CaO19.1389 Uniprot:Q59YD7
        Length = 163

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/79 (36%), Positives = 39/79 (49%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N+DY  T   L   F   G I RVT+L DR +   +G A+I+F Q      A   
Sbjct:    29 SVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAIDE 88

Query:   121 IHGKVLNGRTVNASIAADN 139
             +HGK   GR +  +    N
Sbjct:    89 LHGKEFRGRELRVTAKRTN 107


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/93 (29%), Positives = 49/93 (52%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++VS L    T+  L  LFS FG+I    +++D  T++ +G  FI F    DA  A +++
Sbjct:     9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query:   122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDK 154
              GK+++GR +   +A +     + I     +D+
Sbjct:    69 DGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDR 101


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 131 (51.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  + ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
              AR ++GK L+G+ +    A
Sbjct:    65 VARDMNGKSLDGKAIKVEQA 84

 Score = 36 (17.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   332 YSSDRDRVGRQERGLPPSM 350


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             AAR ++GK L+G+ +    A
Sbjct:    65 AARDMNGKSLDGKAIKVEQA 84


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 134 (52.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S S +++  + Y++    L   F+ +G++    V+ DR T +SRG  F+ F     A SA
Sbjct:    38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSF 145
              +A+ G+ L+GR V  + A D      F
Sbjct:    98 IQALDGRDLHGRVVKVNYANDRTSGGGF 125


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L   F  +G+I+ V ++KDR T KSRG AFI F    DA +
Sbjct:     7 PGK--LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
             A R ++GK L+G+ +  + A
Sbjct:    65 AVRDMNGKSLDGKAIKVAQA 84


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSR 156
             A+ G VL+GR +   +A       S   +R    +SR
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRSR 110


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S++ +YV +L Y +T  +L + F  +G+I    ++ DR T +S+G AFI +     A  A
Sbjct:    16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75

Query:   118 ARAIHGKVLNGRTVNASIAADN 139
                 +G  L GR +  +IA +N
Sbjct:    76 VSKANGIDLQGRKIRVNIAREN 97


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S++ +YV +L Y +T  +L + F  +G+I    ++ DR T +S+G AFI +     A  A
Sbjct:    16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75

Query:   118 ARAIHGKVLNGRTVNASIAADN 139
                 +G  L GR +  +IA +N
Sbjct:    76 VSKANGIDLQGRKIRVNIAREN 97


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 131 (51.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  + ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVLNGRTVNASIA 136
              AR ++GK L+G+ +    A
Sbjct:    65 VARDMNGKSLDGKAIKVEQA 84

 Score = 35 (17.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   168 YECPRNQLGPRERPMPKKL 186
             Y   R+++G +ER +P  +
Sbjct:   332 YSSGRDRVGRQERGLPPSM 350


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L   F  +G+I  V ++KDR T KSRG AF+ F    DA +
Sbjct:     7 PGK--LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASS 144
             AAR ++GK L+G+ +  + A      SS
Sbjct:    65 AARDMNGKSLDGKAIKVAQATKPAFESS 92


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             VYV NL    T+  L   FS +G +    V++DR T +SRG  F+ +    +A +A   +
Sbjct:     5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64

Query:   122 HGKVLNGRTVNASI 135
              GK LNGR V+  +
Sbjct:    65 DGKELNGRRVSVKL 78


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/121 (31%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 133 (51.9 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 35/121 (28%), Positives = 63/121 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +  
Sbjct:   190 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRFS 245

Query:   177 P 177
             P
Sbjct:   246 P 246

 Score = 107 (42.7 bits), Expect = 0.00075, P = 0.00075
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 101

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   102 INTLNGLRLQTKTIKVSYA 120


>MGI|MGI:1913954 [details] [associations]
            symbol:Rbm4b "RNA binding motif protein 4B" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
            expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
            expression" evidence=IDA] [GO:0043153 "entrainment of circadian
            clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
            RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
            SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
            Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
            UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
            CleanEx:MM_RBM4B Genevestigator:Q8VE92
            GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
        Length = 357

 Score = 133 (51.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>RGD|1359343 [details] [associations]
            symbol:Rbm4b "RNA binding motif protein 4B" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
            evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
            regulation of gene expression" evidence=IEA;ISO] [GO:0032922
            "circadian regulation of gene expression" evidence=ISO;ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
            RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
            SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
            GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
            NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
            Uniprot:Q64LC9
        Length = 357

 Score = 133 (51.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|Q64LC9 [details] [associations]
            symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
            GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
            GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
            EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
            UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
            IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
            GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
            NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
            Uniprot:Q64LC9
        Length = 357

 Score = 133 (51.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|E2RSD7 [details] [associations]
            symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043153 "entrainment of circadian clock by
            photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
            gene expression" evidence=IEA] [GO:0010628 "positive regulation of
            gene expression" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
            Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
            KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
            RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
            Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
            NextBio:20851739 Uniprot:E2RSD7
        Length = 359

 Score = 133 (51.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|Q9BQ04 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
            regulation of gene expression" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
            [GO:0032922 "circadian regulation of gene expression" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
            EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
            PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
            IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
            DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
            PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
            Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
            CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
            PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
            ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
            NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
            Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
        Length = 359

 Score = 133 (51.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|Q06AT9 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
            scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
            "regulation of translation" evidence=ISS] [GO:0043153 "entrainment
            of circadian clock by photoperiod" evidence=ISS] [GO:0032922
            "circadian regulation of gene expression" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
            eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
            ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
            KEGG:ssc:100144418 Uniprot:Q06AT9
        Length = 359

 Score = 133 (51.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|Q9BDY9 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9986
            "Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0002190
            "cap-independent translational initiation" evidence=ISS]
            [GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
            "negative regulation of translation" evidence=ISS] [GO:0032055
            "negative regulation of translation in response to stress"
            evidence=ISS] [GO:0033554 "cellular response to stress"
            evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
            "negative regulation of translation involved in gene silencing by
            miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] [GO:0045947 "negative regulation of translational
            initiation" evidence=ISS] [GO:0046822 "regulation of
            nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
            regulation of muscle cell differentiation" evidence=ISS]
            [GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
            [GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
            "pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
            [GO:0097167 "circadian regulation of translation" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
            GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
            GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
            GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
            RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
            SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
            Uniprot:Q9BDY9
        Length = 359

 Score = 133 (51.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/107 (27%), Positives = 56/107 (52%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             ++  +  ++V  L++      L    S+F  I+ V ++KDR T++SRG  FI F     A
Sbjct:     1 MSSEEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHA 60

Query:   115 LSAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECG 161
              +  RA++G+ L+GR ++   A   G+++   ++  +  + R Y  G
Sbjct:    61 SNVMRAMNGESLDGRQIHVDHA---GKSAQGTRRGAFGARGRGYSRG 104


>TAIR|locus:2024852 [details] [associations]
            symbol:CYP59 "cyclophilin 59" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003755
            "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006457 "protein
            folding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR002130
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 Pfam:PF00160
            PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0005829
            GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0652
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735 OMA:DRTQNRS
            HSSP:Q27450 EMBL:AY568526 IPI:IPI00547571 RefSeq:NP_175776.2
            UniGene:At.37348 SMR:Q6Q151 IntAct:Q6Q151 STRING:Q6Q151
            EnsemblPlants:AT1G53720.1 GeneID:841810 KEGG:ath:AT1G53720
            TAIR:At1g53720 InParanoid:Q6Q151 ProtClustDB:CLSN2690463
            Genevestigator:Q6Q151 Uniprot:Q6Q151
        Length = 506

 Score = 134 (52.2 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 31/116 (26%), Positives = 55/116 (47%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P  + ++V  L+    + DLHT+FS FG +    V++D  T  S   AFI+F        
Sbjct:   240 PPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQ 299

Query:   117 AARAIHGKVLNGRTVNASIAADNGRA-SSFIKKRVYKDKSR-CYECGDEGHLSYEC 170
             A   +   +++ R ++   +    +  S F +K   K K   C++CG   H++ +C
Sbjct:   300 AYFKMDNALIDDRRIHVDFSQSVSKLWSQFRQKDSQKGKGNGCFKCGSTDHIAKDC 355


>TAIR|locus:2178198 [details] [associations]
            symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
            IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
            ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
            EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
            TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
            ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
        Length = 527

 Score = 134 (52.2 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P+   +YV NL + ++   L  +F  FG +  V +  D  T + +G  FIQFVQ+  + +
Sbjct:   262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321

Query:   117 AARAIHGKV-LNGRTVNASIAADN-GRASSFIKKRVYKD 153
             A  A++GK+ + GRT+  S  +D+ G   S  K   + D
Sbjct:   322 AQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDD 360


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  L +  T   L   FS +G I  V V ++R T +SRG  F+ F    DA  A   +
Sbjct:     7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66

Query:   122 HGKVLNGRTVNASIAADNG 140
             +GK ++GRT+    A   G
Sbjct:    67 NGKSVDGRTIRVDEAGKGG 85


>UNIPROTKB|E7ETJ9 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
            ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
            Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
            Uniprot:E7ETJ9
        Length = 132

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:    60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119

Query:   122 HGKVLNGRTVNAS 134
              G+ L GR +  +
Sbjct:   120 GGQWLGGRQIRTN 132


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     9 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:   117 AARAIHGKVL 126
             AAR ++GK++
Sbjct:    67 AARDMNGKMM 76


>POMBASE|SPBC16E9.12c [details] [associations]
            symbol:pab2 "poly(A) binding protein Pab2" species:4896
            "Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
            "negative regulation of G2/M transition of mitotic cell cycle"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
            GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
            GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
            PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
            STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
            KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
            NextBio:20800884 Uniprot:O14327
        Length = 166

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 25/74 (33%), Positives = 47/74 (63%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N+DY++T  +L + F++ G + RVT+L D+ T   +G A+I+F + P  +  A  
Sbjct:    56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE-PSLVPNALL 114

Query:   121 IHGKVLNGRTVNAS 134
             ++G +L+ R +  +
Sbjct:   115 LNGSMLHERPLKVT 128


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N  +  T  DL   FS  G ++ V ++ DR T + RG AF++F +   A  A   
Sbjct:     5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64

Query:   121 IHGKVLNGRTVNASIA 136
              +G   NGR +  ++A
Sbjct:    65 FNGVDFNGRALRVNLA 80


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N  +  T  DL   FS  G ++ V ++ DR T + RG AF++F +   A  A   
Sbjct:     5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64

Query:   121 IHGKVLNGRTVNASIA 136
              +G   NGR +  ++A
Sbjct:    65 FNGVDFNGRALRVNLA 80


>FB|FBgn0010774 [details] [associations]
            symbol:Ref1 "RNA and export factor binding protein 1"
            species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
            coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
            GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
            Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
            GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
            EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
            IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
            EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
            UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
            OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
        Length = 266

 Score = 132 (51.5 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 30/76 (39%), Positives = 44/76 (57%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V NLDY ++N+D+  LF+ FG I +  V  DR+ R S G A + F +  DAL A +  HG
Sbjct:   113 VGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGR-SLGTADVIFERRADALKAIKQYHG 171

Query:   124 KVLNGRTVNASIAADN 139
               L+GR +   +A  +
Sbjct:   172 VPLDGRPMTIQLAVSD 187


>UNIPROTKB|F6UBL3 [details] [associations]
            symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
            Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
        Length = 133

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/70 (41%), Positives = 38/70 (54%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    19 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 78

Query:   122 HG-KVLNGRT 130
             H  K L GRT
Sbjct:    79 HEQKTLPGRT 88


>DICTYBASE|DDB_G0284663 [details] [associations]
            symbol:mrd1 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
            processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
            GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
            Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
            KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
            SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
            KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
        Length = 895

 Score = 135 (52.6 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPD-ALSAARA 120
             ++V NL Y+    DL  +FS FGKI+ + +  D  ++KS+G+AFI ++ IP+ A+ A   
Sbjct:   363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYL-IPENAVQALND 421

Query:   121 IHGKVLNGRTVN 132
             + GKV  GR ++
Sbjct:   422 MDGKVFQGRLIH 433


>UNIPROTKB|H9L1A3 [details] [associations]
            symbol:LOC100859076 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
            Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
        Length = 306

 Score = 132 (51.5 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ +   ++    R +  +      DKS CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMRVQLSTSRLRTAPGMG-----DKSGCYRCGKEGHWSKECPVDRPG 181


>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
            symbol:PF13_0122 "cyclophilin, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 22/73 (30%), Positives = 44/73 (60%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +D  +    L+ +FS+FG I  + V  +  T+K+RG AF+++V++ DA  A   +
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:   122 HGKVLNGRTVNAS 134
             +   LNG+ ++ +
Sbjct:    70 NNFELNGKRIHVN 82


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKV 125
             AAR ++GK+
Sbjct:    65 AARDMNGKM 73


>UNIPROTKB|C0H5C7 [details] [associations]
            symbol:PF13_0122 "RRM containing cyclophilin" species:36329
            "Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
            isomerization" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 22/73 (30%), Positives = 44/73 (60%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +D  +    L+ +FS+FG I  + V  +  T+K+RG AF+++V++ DA  A   +
Sbjct:    10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69

Query:   122 HGKVLNGRTVNAS 134
             +   LNG+ ++ +
Sbjct:    70 NNFELNGKRIHVN 82


>POMBASE|SPBC4F6.14 [details] [associations]
            symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
            "rRNA processing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
            HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
            PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
            STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
            KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
        Length = 674

 Score = 124 (48.7 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S ST++V NL +     DL   FS  G I    V+ +  T ++RG  F+ F  + DA  A
Sbjct:     3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62

Query:   118 ARAIHGKVLNGRTVNASIAADNGRA 142
             A+ +  K L+GR +    A    R+
Sbjct:    63 AKELKNKKLHGRILRLDFATPRKRS 87

 Score = 43 (20.2 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query:   136 AADNGRASSFIKKRVYKDKSRCYECGDE 163
             A D      FIK R  KD   C E   +
Sbjct:   313 ATDRSLGRGFIKFRYEKDCQNCLEMASQ 340

 Score = 37 (18.1 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query:   220 ENESEEKRKKAKRV 233
             +NE++EK+ K  R+
Sbjct:   648 DNEAKEKQAKVARI 661


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             VYV NL + + N  L  LFS  GK+    V+ DR T +SRG  F+    + +   A  A+
Sbjct:   246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305

Query:   122 HGKVLNGRTVNASIAAD 138
              G+ L GR +  ++A +
Sbjct:   306 DGQNLEGRAIRVNVAEE 322

 Score = 110 (43.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 31/103 (30%), Positives = 48/103 (46%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             PS+   ++V NL Y + +  L  LF   G +    V+ +R T +SRG  F+    + +A 
Sbjct:   146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCY 158
             +A    +   LNGR +  + AA  G        RVY+   R Y
Sbjct:   206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAP-RVYEPAFRVY 247


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     9 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:   117 AARAIHGK 124
             AAR ++GK
Sbjct:    67 AARDMNGK 74


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             PS + ++VS L    T+  L T F+ FG++A   V+ DR +  S+G  F+++  + D+  
Sbjct:    54 PS-TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSF 145
                 + GK L+G  + A  A    ++ S+
Sbjct:   113 GIAGMDGKFLDGWVIFAEYARPREQSQSY 141


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             +A    +VYV N+ Y  T  ++   F+  G +  V ++ DR T + RG AF++F +   A
Sbjct:     1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60

Query:   115 LSAARAIHGKVLNGRTVNASIA 136
               A   ++G   NGR +  + A
Sbjct:    61 QRAVEQLNGVAFNGRNLRVNYA 82


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 125 (49.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ +Y+  L   L +  L  LFS+FG+I    V+KDR T  S+G  F+++  +  A +A 
Sbjct:   479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538

Query:   119 RAIHGKVLNGRTVNASIA 136
             +A++G    GRT+   IA
Sbjct:   539 QAMNGYRFEGRTLAVRIA 556

 Score = 52 (23.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query:   135 IAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRERPMP 183
             + AD+G A+S I   VY         G   ++SY    N + P   P P
Sbjct:   672 VQADSGAATSSIPPNVYGSSVTAMP-GQPPYMSYPSYYNAVPPPTPPAP 719


>UNIPROTKB|Q2KIV3 [details] [associations]
            symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0010628 "positive regulation of gene expression"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
            IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
            Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
            InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
        Length = 359

 Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181


>UNIPROTKB|D4A1W5 [details] [associations]
            symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
            ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
            ArrayExpress:D4A1W5 Uniprot:D4A1W5
        Length = 361

 Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181


>UNIPROTKB|Q3MHX3 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
            taurus" [GO:0097167 "circadian regulation of translation"
            evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
            evidence=ISS] [GO:0002190 "cap-independent translational
            initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
            "regulation of nucleocytoplasmic transport" evidence=ISS]
            [GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
            "nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
            evidence=ISS] [GO:0051149 "positive regulation of muscle cell
            differentiation" evidence=ISS] [GO:0045947 "negative regulation of
            translational initiation" evidence=ISS] [GO:0035278 "negative
            regulation of translation involved in gene silencing by miRNA"
            evidence=ISS] [GO:0033554 "cellular response to stress"
            evidence=ISS] [GO:0032055 "negative regulation of translation in
            response to stress" evidence=ISS] [GO:0017148 "negative regulation
            of translation" evidence=ISS] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
            GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
            UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
            Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
            InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
            GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
        Length = 362

 Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRSG 181


>UNIPROTKB|Q9BWF3 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0051149 "positive regulation of muscle cell
            differentiation" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
            nucleocytoplasmic transport" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043153 "entrainment of circadian clock by
            photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
            [GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
            "negative regulation of translation in response to stress"
            evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0033554 "cellular response to stress"
            evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
            evidence=IDA] [GO:0017148 "negative regulation of translation"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
            "negative regulation of translational initiation" evidence=IDA]
            [GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
            regulation of translation involved in gene silencing by miRNA"
            evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
            [GO:0002190 "cap-independent translational initiation"
            evidence=IDA] [GO:0097167 "circadian regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
            GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
            GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
            GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
            EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
            EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
            IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
            RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
            UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
            ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
            MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
            PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
            Ensembl:ENST00000396053 Ensembl:ENST00000398692
            Ensembl:ENST00000408993 Ensembl:ENST00000409406
            Ensembl:ENST00000483858 Ensembl:ENST00000530235
            Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
            UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
            HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
            ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
            ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
            Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
        Length = 364

 Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181


>UNIPROTKB|Q4R979 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
            fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
            translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
            translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
            "nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
            "nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0032055 "negative regulation of
            translation in response to stress" evidence=ISS] [GO:0033554
            "cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
            binding" evidence=ISS] [GO:0035278 "negative regulation of
            translation involved in gene silencing by miRNA" evidence=ISS]
            [GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
            "entrainment of circadian clock by photoperiod" evidence=ISS]
            [GO:0045947 "negative regulation of translational initiation"
            evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
            transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
            cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
            MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
            evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
            binding" evidence=ISS] [GO:0097167 "circadian regulation of
            translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
            GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
            GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
            HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
            GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
            PRIDE:Q4R979 Uniprot:Q4R979
        Length = 364

 Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181


>UNIPROTKB|E2RS70 [details] [associations]
            symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
            KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
            ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
            KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
        Length = 365

 Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             + + ++V N+    TN +L   F  +G +    ++KD         AF+   +  DA+ A
Sbjct:    76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              R +      G+ ++  ++    R +  +      D+S CY CG EGH S ECP ++ G
Sbjct:   128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 35/130 (26%), Positives = 59/130 (45%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             +S ++V  L + +T   L + F  +GKI    ++  R T + RG  FI F     A  A 
Sbjct:    11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query:   119 RAIHGKVLNGRTVNASIAADN--GRASSFIKKRV-YKDKSR-----CYECGDEGHLSYEC 170
             + +HG+ L  + ++ + A     G     +KK   Y  + +     C++C   GH + +C
Sbjct:    71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query:   171 PRNQLGPRER 180
             P      RER
Sbjct:   131 PSTG-DDRER 139


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV ++ Y  T  DL  LFS  G +  V ++ D  T +S+G  +++ +   +A  A   +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   122 HGKVLNGRTVNASIAADNGRAS 143
              G +L  R +  S+A    +A+
Sbjct:    65 DGALLRNRVITVSVARPQKQAT 86


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV ++ Y  T  DL  LFS  G +  V ++ D  T +S+G  +++ +   +A  A   +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   122 HGKVLNGRTVNASIAADNGRAS 143
              G +L  R +  S+A    +A+
Sbjct:    65 DGALLRNRVITVSVARPQKQAT 86


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 37/121 (30%), Positives = 58/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y  G  G  +   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGGGGYGRRT-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             T+YV NL Y    S +  LF+ FG++  V ++KD+ T K RG  F+  +    A +A  A
Sbjct:    65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV-VIAASQAQTAIDA 123

Query:   121 IHGKVLNGRTVNASIAAD 138
             ++ K    RT+   IA D
Sbjct:   124 LNEKEYMQRTLKVRIAND 141


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             T+YV NL Y    S +  LF+ FG++  V ++KD+ T K RG  F+  +    A +A  A
Sbjct:    65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV-VIAASQAQTAIDA 123

Query:   121 IHGKVLNGRTVNASIAAD 138
             ++ K    RT+   IA D
Sbjct:   124 LNEKEYMQRTLKVRIAND 141


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 37/121 (30%), Positives = 57/121 (47%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPRE 179
             A+ G VL+GR +   +A       S   +R      R Y     G  S   PR +   R 
Sbjct:    74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR--GPPPRRYGSSGYGRRS-RSPRRRRRSRS 130

Query:   180 R 180
             R
Sbjct:   131 R 131


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/81 (30%), Positives = 44/81 (54%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  L +  T+  L   FS +G I    V+KDR T +SRG  F++F   P+A +A  A+
Sbjct:     4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63

Query:   122 HGKVLNGRTVNASIAADNGRA 142
             + +  +GR +    A++   A
Sbjct:    64 NNQEFDGRIIRVDKASERPAA 84


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIA 136
             A+ G VL+GR +   +A
Sbjct:    74 AMDGAVLDGRELRVQMA 90


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 126 (49.4 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L  +F  +G+I  V ++KDR T KSRG AF+ F    DA  
Sbjct:     7 PGK--LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:   117 AARAIHGKVL 126
             AAR ++GK+L
Sbjct:    65 AARDMNGKLL 74


>FB|FBgn0264270 [details] [associations]
            symbol:Sxl "Sex lethal" species:7227 "Drosophila
            melanogaster" [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
            determination" evidence=TAS] [GO:0007549 "dosage compensation"
            evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0007541 "sex determination, primary response to
            X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
            [GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
            "reciprocal meiotic recombination" evidence=TAS] [GO:0018993
            "somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
            evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
            differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
            of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
            activity, nucleic acid binding" evidence=TAS] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
            evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
            [GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
            "oocyte differentiation" evidence=IDA] [GO:0043234 "protein
            complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
            GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
            GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
            GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
            GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
            GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
            EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
            EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
            RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
            RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
            RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
            RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
            RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
            RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
            RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
            RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
            PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
            ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
            STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
            EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
            GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
            FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
            OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
            Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
        Length = 354

 Score = 130 (50.8 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 25/87 (28%), Positives = 53/87 (60%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YV+NL   +T+  L T+F  +G I +  +L+D+ T + RGVAF+++ +  +A  A  
Sbjct:   211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270

Query:   120 AIHGKVLNG--RTVNASIAADNGRASS 144
             A++  +  G  + ++  +A ++G+A +
Sbjct:   271 ALNNVIPEGGSQPLSVRLAEEHGKAKA 297


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 129 (50.5 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T SDL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   114 VFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 173

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   174 MELDGRRIRVDFS 186


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 130 (50.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   192 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 246

 Score = 107 (42.7 bits), Expect = 0.00080, P = 0.00080
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   104 INTLNGLRLQTKTIKVSYA 122


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 130 (50.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   192 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 246

 Score = 107 (42.7 bits), Expect = 0.00080, P = 0.00080
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   104 INTLNGLRLQTKTIKVSYA 122


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 130 (50.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   197 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 251

 Score = 107 (42.7 bits), Expect = 0.00082, P = 0.00082
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   109 INTLNGLRLQTKTIKVSYA 127


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 130 (50.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   185 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 239

 Score = 107 (42.7 bits), Expect = 0.00083, P = 0.00083
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:    97 INTLNGLRLQTKTIKVSYA 115


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 130 (50.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   185 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 239

 Score = 107 (42.7 bits), Expect = 0.00083, P = 0.00083
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:    97 INTLNGLRLQTKTIKVSYA 115


>UNIPROTKB|E1C131 [details] [associations]
            symbol:E1C131 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
            EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
            EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
            EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
            EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
            EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
            EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
            EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
            IPI:IPI00822398 ProteinModelPortal:E1C131
            Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
        Length = 123

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  +   L   DL  LF  FGKI  +TVLKDR T   +G AF+ + +   AL A  A+
Sbjct:    54 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 113

Query:   122 HG-KVLNG 128
             H  K L G
Sbjct:   114 HEQKTLPG 121


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   192 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 246

 Score = 107 (42.7 bits), Expect = 0.00085, P = 0.00085
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   104 INTLNGLRLQTKTIKVSYA 122


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   192 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 246

 Score = 107 (42.7 bits), Expect = 0.00085, P = 0.00085
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   104 INTLNGLRLQTKTIKVSYA 122


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   208 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 262

 Score = 107 (42.7 bits), Expect = 0.00086, P = 0.00086
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    60 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 119

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   120 INTLNGLRLQTKTIKVSYA 138


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   196 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 250

 Score = 107 (42.7 bits), Expect = 0.00087, P = 0.00087
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    48 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 107

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   108 INTLNGLRLQTKTIKVSYA 126


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   197 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 251

 Score = 107 (42.7 bits), Expect = 0.00087, P = 0.00087
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   109 INTLNGLRLQTKTIKVSYA 127


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    ++S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   197 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 251

 Score = 107 (42.7 bits), Expect = 0.00087, P = 0.00087
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   109 INTLNGLRLQTKTIKVSYA 127


>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
            symbol:rbm4.2 "RNA binding motif protein 4.2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
            IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
            STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
            InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
        Length = 385

 Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 31/121 (25%), Positives = 56/121 (46%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             P  ST ++VSN+    TN +L   F  +G +    ++KD         AF+   ++ DA+
Sbjct:    74 PRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERMDDAM 125

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              A   +      G+ +   ++    R +  +      D++ CY CG++GH S +C  +Q 
Sbjct:   126 EAISGLENTTFQGKLIKVQLSTSRLRTAPGMG-----DQTGCYICGEQGHWSKDCRHSQN 180

Query:   176 G 176
             G
Sbjct:   181 G 181


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             S +++  L +  T   L   FS  G++    ++ DR + +S+G  F+ F    +A  A  
Sbjct:    34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93

Query:   120 AIHGKVLNGRTV 131
               +G+ LNGRT+
Sbjct:    94 EFNGQQLNGRTI 105


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 130 (50.8 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YV NL     +S L+ LFS  G IA V +++D+ T+  RG  F++ V + D+ SA  
Sbjct:   382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441

Query:   120 AIHGKVLNGRTVNAS 134
             +I+G  + G+T++ S
Sbjct:   442 SINGVQVGGKTISVS 456


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 126 (49.4 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIA 136
             A+ G +L+GR +   +A
Sbjct:    74 AMDGAILDGRELRVQMA 90


>UNIPROTKB|E2RRF5 [details] [associations]
            symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
            GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
            Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
        Length = 968

 Score = 132 (51.5 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 36/109 (33%), Positives = 55/109 (50%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             LA S   +++ NL Y  T  DL  LFS FG ++ +    D  T+K +G AF+ F+    A
Sbjct:   401 LADS-GRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHA 459

Query:   115 LSAARAIHGKVLNGR-------TVNASIAADNG-RASSFIKKRVYKDKS 155
             + A   + G+V  GR       T+    + D   + SS+ KK+  KDK+
Sbjct:   460 VRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDKA 508


>UNIPROTKB|P52299 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
            "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=IDA] [GO:0006446 "regulation of
            translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
            UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
            SMR:P52299 GeneID:100380998 KEGG:xla:100380998
            Xenbase:XB-GENE-1005792 Uniprot:P52299
        Length = 153

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query:    55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDA 114
             L     T+YV NL +  T   +H LFS  G + R+ +  D+  + + G  F+++    DA
Sbjct:    32 LLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADA 91

Query:   115 LSAARAIHGKVLNGRTV 131
               A R I+G  L+ R V
Sbjct:    92 EQAMRFINGTRLDDRIV 108


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 129 (50.5 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 35/119 (29%), Positives = 62/119 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQL 175
              ++G+  +G T   ++   N    + S  +  ++Y+  +R Y     G L ++  R +L
Sbjct:   197 GLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQSPNRRYP----GPLHHQAQRFRL 251

 Score = 107 (42.7 bits), Expect = 0.00082, P = 0.00082
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +  +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   109 INTLNGLRLQTKTIKVSYA 127


>UNIPROTKB|Q96B58 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
            ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
            Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
        Length = 214

 Score = 125 (49.1 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 129 (50.5 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 32/102 (31%), Positives = 54/102 (52%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS FG+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCY 158
              ++G+   G T   ++   N    ++S  +   +Y+  +R Y
Sbjct:   214 GLNGQKPPGATEPITVKFANNPSQKSSQALLSHLYQSPNRRY 255

 Score = 110 (43.8 bits), Expect = 0.00037, P = 0.00037
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +L +LF + G+I    +++D+ T +S G  F+ +++  DA  A
Sbjct:    66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKA 125

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:   126 INTLNGLRLQTKTIKVSYA 144


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 127 (49.8 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +YV NL + + +  L  LFS  GK+    V+ DR T +SRG  F+Q     +   A  A+
Sbjct:   209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268

Query:   122 HGKVLNGRTVNASIAADNGR 141
              G+ L GR +  ++A +  R
Sbjct:   269 DGQNLEGRAIKVNVAEERTR 288

 Score = 108 (43.1 bits), Expect = 0.00040, P = 0.00040
 Identities = 29/102 (28%), Positives = 47/102 (46%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P ++ ++V NL Y + +  L  LF   G +    V+ +R T +SRG  F+    + +A  
Sbjct:   110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169

Query:   117 AARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCY 158
             A    +   +NGR +  + AA  G      + RVY    R Y
Sbjct:   170 AVEKFNSFEVNGRRLTVNRAAPRGSRPER-QPRVYDAAFRIY 210


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 127 (49.8 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S S ++V  + Y+     L   FS +G++    ++ DR T +SRG AF+ F    +A S 
Sbjct:    32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA-SN 90

Query:   118 ARAIHGKVLNGRTVNASIAADNG 140
             A  + G+ L+GR +  + A + G
Sbjct:    91 AMQLDGQDLHGRRIRVNYATERG 113


>TAIR|locus:2181763 [details] [associations]
            symbol:AT5G02530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
            KO:K12881 HSSP:O08583 eggNOG:NOG316507 HOGENOM:HOG000239962
            OMA:IRNRPAI UniGene:At.27625 UniGene:At.72858 EMBL:AY140010
            EMBL:BT006323 IPI:IPI00538790 RefSeq:NP_195873.2
            ProteinModelPortal:Q8L719 SMR:Q8L719 IntAct:Q8L719 STRING:Q8L719
            PaxDb:Q8L719 PRIDE:Q8L719 EnsemblPlants:AT5G02530.1 GeneID:831923
            KEGG:ath:AT5G02530 TAIR:At5g02530 InParanoid:Q8L719
            PhylomeDB:Q8L719 ProtClustDB:CLSN2918011 ArrayExpress:Q8L719
            Genevestigator:Q8L719 Uniprot:Q8L719
        Length = 292

 Score = 127 (49.8 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +Y+SNLDY ++N D+  LFS  G + R  +  DR+ R S+G A + F +  DAL+A +  
Sbjct:   110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGR-SKGTAEVVFSRRGDALAAVKRY 168

Query:   122 HGKVLNGRTVNASIAADN 139
             +   L+G+ +   I   N
Sbjct:   169 NNVQLDGKLMKIEIVGTN 186


>POMBASE|SPAC19A8.13 [details] [associations]
            symbol:usp101 "U1 snRNP-associated protein Usp101
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
            "commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
            recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
            snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
            GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
            GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
            Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
            ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
            EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
            HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
            GO:GO:0030619 Uniprot:O13829
        Length = 261

 Score = 126 (49.4 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/85 (35%), Positives = 48/85 (56%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K T+++S L Y    SD+   F+ +G I R+ V++++ T KS G AF+ F +  D   
Sbjct:    98 PYK-TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKV 156

Query:   117 AARAIHGKVLNGRTVNASIAADNGR 141
             A +A  G +LNGR +   +  + GR
Sbjct:   157 AYKASAGLMLNGRRIVVDV--ERGR 179


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/81 (33%), Positives = 46/81 (56%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             T+YV NL + + +  L  + S FG++    V+ +++T +SRG  FI+ V+  DA      
Sbjct:     4 TLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE-VRDEDAEKFMTG 62

Query:   121 IHGKVLNGRTVNASIAAD-NG 140
             ++GK + GR +  S A + NG
Sbjct:    63 LNGKEVEGRQLVVSEARERNG 83


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/81 (33%), Positives = 46/81 (56%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             T+YV NL + + +  L  + S FG++    V+ +++T +SRG  FI+ V+  DA      
Sbjct:     4 TLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE-VRDEDAEKFMTG 62

Query:   121 IHGKVLNGRTVNASIAAD-NG 140
             ++GK + GR +  S A + NG
Sbjct:    63 LNGKEVEGRQLVVSEARERNG 83


>UNIPROTKB|G4MUH3 [details] [associations]
            symbol:MGG_07252 "Polyadenylate-binding protein 2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
            ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
            GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
        Length = 193

 Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 22/74 (29%), Positives = 44/74 (59%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +++V N+DY+ +  ++   F + G I RVT+L D+ T + +G A+++F + P  ++ A  
Sbjct:    74 SIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTE-PSLVAQALV 132

Query:   121 IHGKVLNGRTVNAS 134
             ++  V  GR +  S
Sbjct:   133 LNESVFKGRNIKVS 146


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 127 (49.8 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             S+ +V+V N+ Y ++   + ++FS  G +  + ++ DR T K +G  FI+F  I  A  A
Sbjct:    16 SQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVA 75

Query:   118 ARAIHGKVLNGRTVNASIAADNGRASSF 145
              R ++G  L+GR +    AA       F
Sbjct:    76 IRNLNGYELSGRILRVDSAAGGMNMEEF 103


>WB|WBGene00020354 [details] [associations]
            symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
            HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
            PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
            STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
            KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
            InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
        Length = 177

 Score = 120 (47.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 24/79 (30%), Positives = 46/79 (58%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N+D+  T S++   F+  GK+ARVT+ KD+ T   +  AF++F ++ +++  A  
Sbjct:    47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKL-ESVQLALV 105

Query:   121 IHGKVLNGRTVNASIAADN 139
             + G +   R +  ++   N
Sbjct:   106 LSGTMFRNRKIMVTLKRTN 124


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ V NL Y  +   L  +F  +G++  V + +DR T++SRG AF++F    DA  A  
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   120 AIHGKVLNGRTVNASIA 136
             A+ G +L+GR +   +A
Sbjct:    74 AMDGALLDGRELRVQMA 90


>WB|WBGene00004701 [details] [associations]
            symbol:rsp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
            GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ + NL Y  T +DL   F  +G I  V + +D+ +R+S+G  F++F +  DA  A  
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   120 AIHGKVLNGRTVNASIA 136
                GK+++GR +  ++A
Sbjct:    79 RTDGKLVDGRELRVTLA 95


>UNIPROTKB|Q09511 [details] [associations]
            symbol:rsp-4 "Probable splicing factor,
            arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
            GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             +++ + NL Y  T +DL   F  +G I  V + +D+ +R+S+G  F++F +  DA  A  
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   120 AIHGKVLNGRTVNASIA 136
                GK+++GR +  ++A
Sbjct:    79 RTDGKLVDGRELRVTLA 95


>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
            symbol:tia1 "cytotoxic granule-associated RNA
            binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
            EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
            RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
            Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
            InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
        Length = 386

 Score = 127 (49.8 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 36/116 (31%), Positives = 57/116 (49%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:    98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157

Query:   122 HGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGP 177
              G+ L GR +  + A     A     K  Y+  ++        HLS++   NQ  P
Sbjct:   158 GGQWLGGRQIRTNWATRKPPAP----KATYETNTK--------HLSFDEVVNQSSP 201


>TAIR|locus:2164082 [details] [associations]
            symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
            ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
            GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
            InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
            ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
        Length = 100

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query:    59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118
             ++ +YV+ L +      L + F  FG+I    V+ D AT++S+G  F+ F ++  A  A 
Sbjct:     8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67

Query:   119 RAIHGKVLNGRTVNASIAADNGRASSF 145
                +   ++GRTVN  +A    R  ++
Sbjct:    68 ENPN-HTIDGRTVNCKLAYLGARVHNY 93


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:    93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   153 GGQWLGGRQIRTNWA 167


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:    97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   157 GGQWLGGRQIRTNWA 171


>UNIPROTKB|E2RJG5 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
            EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
        Length = 427

 Score = 127 (49.8 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:     9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:    69 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 124


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 126 (49.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 35/121 (28%), Positives = 61/121 (50%)

Query:    60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119
             + +YVS L   +T  +L  LFS +G+I    +L D+ T  SRGV FI+F +  +A  A +
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   120 AIHGKVLNGRTVNASIAADNG---RASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLG 176
              ++G+   G T   ++   N    + +  I  ++Y+  +R Y     G L+ +  R +  
Sbjct:   185 GLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYP----GPLAQQAQRFRFS 240

Query:   177 P 177
             P
Sbjct:   241 P 241

 Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 23/79 (29%), Positives = 43/79 (54%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SK+ + V+ L   +T  +L +LF + G+I    +++D+ T +S G  F+ ++   DA  A
Sbjct:    37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96

Query:   118 ARAIHGKVLNGRTVNASIA 136
                ++G  L  +T+  S A
Sbjct:    97 INTLNGLRLQTKTIKVSYA 115


>MGI|MGI:1923433 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
            IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
            ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
            PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
            GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
            NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
            Uniprot:Q7TN33
        Length = 460

 Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:   108 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 163


>RGD|1310451 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
            UCSC:RGD:1310451 Uniprot:D4ABS9
        Length = 460

 Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:   108 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 163


>TAIR|locus:2042366 [details] [associations]
            symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
            IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
            ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
            PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
            KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
            PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
            Uniprot:Q8RWQ1
        Length = 809

 Score = 129 (50.5 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V +LD   +  DL  +F   G++  V +LK+  T+KS+G AF++F  +  A  A + +
Sbjct:   216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275

Query:   122 HGKVLNGRTVNASIAADN 139
                ++NG+    + + DN
Sbjct:   276 KSPMINGKKCGVTASQDN 293


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 27/77 (35%), Positives = 39/77 (50%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  L Y  T++ L   F  FG I    V+ DR T KSRG  F   V + D  +A RA 
Sbjct:    13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF---VTMADRAAAERAC 69

Query:   122 H--GKVLNGRTVNASIA 136
                  +++GR  N ++A
Sbjct:    70 KDPNPIIDGRKANVNLA 86


>TAIR|locus:2142519 [details] [associations]
            symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
            KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
            EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
            RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
            SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
            EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
            TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
            ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
        Length = 217

 Score = 122 (48.0 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 26/74 (35%), Positives = 46/74 (62%)

Query:    61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120
             +VYV N+DYA T  ++   F T G + RVT+L D+  +  +G A+++FV++ +A+  A  
Sbjct:    90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQP-KGFAYVEFVEV-EAVQEALQ 147

Query:   121 IHGKVLNGRTVNAS 134
             ++   L+GR +  S
Sbjct:   148 LNESELHGRQLKVS 161


>UNIPROTKB|Q96J87 [details] [associations]
            symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
            EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
            EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
            IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
            RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
            ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
            PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
            Ensembl:ENST00000287202 Ensembl:ENST00000395258
            Ensembl:ENST00000543764 Ensembl:ENST00000567083
            Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
            UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
            HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
            InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
            EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
            ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
            Genevestigator:Q96J87 Uniprot:Q96J87
        Length = 481

 Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:   108 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 163


>UNIPROTKB|E1B8K2 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
            Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
        Length = 482

 Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:   108 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 163


>UNIPROTKB|F1SHM1 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
        Length = 482

 Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 40/119 (33%), Positives = 57/119 (47%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++V  +   L   DL  LF  FG+I  +TVLKDR T   +G AF+ +     AL A  A+
Sbjct:    48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107

Query:   122 HG-KVLNG--RTVNASIAADNGRASS---FI----KKRVYKDKSRCYECGDEGHLSYEC 170
             H  K L G  R +    AA  GR      F+    K++  +D  R ++    GH+  EC
Sbjct:   108 HEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQ--PFGHIE-EC 163


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             V  L    T  DL  +FS +G IA V+++ D+ +R+SRG AF+ F  + DA  A    +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANG 181

Query:   124 KVLNGRTVNASIA 136
               L+GR +    +
Sbjct:   182 MELDGRRIRVDFS 194


>DICTYBASE|DDB_G0280529 [details] [associations]
            symbol:cstf2 "cleavage stimulation factor 64 kDa
            subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
            [GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
            GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
            KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
            ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
            KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
        Length = 541

 Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 31/86 (36%), Positives = 47/86 (54%)

Query:    58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSA 117
             SKS V+V N+ Y     DL  +FS  GK+    +L+D+ ++KS+G  F ++  + +ALSA
Sbjct:     2 SKS-VFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSA 60

Query:   118 ARAIHGKVLNGRTVNASIAADNGRAS 143
              R         R +  S A DN +AS
Sbjct:    61 IRNYMLFTFGNRVLRVSYA-DNEKAS 85


>ZFIN|ZDB-GENE-070620-21 [details] [associations]
            symbol:zgc:165603 "zgc:165603" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
            EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
            RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
            Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
            eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
            NextBio:20890554 Uniprot:A5PLG5
        Length = 155

 Score = 112 (44.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             +++  +   L   DL  LF  FGKI  +TVLKDR T   +G AF+ +     A+ A  A+
Sbjct:    84 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 143

Query:   122 HG-KVLNG 128
             H  K L G
Sbjct:   144 HEQKTLPG 151


>MGI|MGI:1341044 [details] [associations]
            symbol:Alyref "Aly/REF export factor" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000346 "transcription export complex" evidence=ISO]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
            [GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
            nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
            GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
            Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
            HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
            GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
            EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
            IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
            PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
            STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
            Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
            UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
            NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
            GermOnline:ENSMUSG00000025134 Uniprot:O08583
        Length = 255

 Score = 123 (48.4 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 167

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   168 VPLDGRPMNIQL 179


>UNIPROTKB|Q3T0I4 [details] [associations]
            symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
            taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
            export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000346 "transcription export complex"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
            GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
            HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
            IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
            ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
            Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
            GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
            NextBio:20877198 Uniprot:Q3T0I4
        Length = 257

 Score = 123 (48.4 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 168

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   169 VPLDGRPMNIQL 180


>UNIPROTKB|F1PL92 [details] [associations]
            symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
            Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
            EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
        Length = 257

 Score = 123 (48.4 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 168

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   169 VPLDGRPMNIQL 180


>UNIPROTKB|Q86V81 [details] [associations]
            symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000346 "transcription export complex" evidence=IDA]
            [GO:0046784 "intronless viral mRNA export from host nucleus"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
            "cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
            RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
            GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
            GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
            Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
            GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
            HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
            IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
            PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
            IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
            DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
            Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
            GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
            MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
            InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
            ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
            Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
        Length = 257

 Score = 123 (48.4 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 168

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   169 VPLDGRPMNIQL 180


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 108 (43.1 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             ++VS L    TN  L   F++FG++    V+ DR + +S+G  F+ +  I DA  A   +
Sbjct:    36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query:   122 HGKVLNG 128
             + K L+G
Sbjct:    96 NAKFLDG 102


>TAIR|locus:2831834 [details] [associations]
            symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
            ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
            EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
            OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
        Length = 101

 Score = 108 (43.1 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             P K T +Y++NLD  ++   L  +FS FGK+ R  + KD    +SRG AFI+F     A 
Sbjct:    13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEF---ESAD 68

Query:   116 SAARA-IHGKVLNGRTVNASI 135
             SA RA +H   ++GR +   I
Sbjct:    69 SAGRAMLH---MDGRLIGQKI 86


>UNIPROTKB|E1C2L5 [details] [associations]
            symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
            "transcription export complex" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
            from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
            InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
            GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
            IPI:IPI00576073 ProteinModelPortal:E1C2L5
            Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
        Length = 258

 Score = 123 (48.4 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   108 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 166

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   167 VPLDGRPMNIQL 178


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 129 (50.5 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALS 116
             P K  +++  L+       L   F  +G I +V ++KDR T KSRG AF+ F    DA +
Sbjct:     7 PEK--LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKA 64

Query:   117 AARAIHGKVLNGRTV 131
             AAR ++GK L+G+ +
Sbjct:    65 AARDMNGKYLDGKAI 79


>UNIPROTKB|E9PB61 [details] [associations]
            symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
            OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
            GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
            NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
            IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
            ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
        Length = 264

 Score = 123 (48.4 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   117 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 175

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   176 VPLDGRPMNIQL 187


>UNIPROTKB|D4A964 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
        Length = 368

 Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>UNIPROTKB|F1LQ36 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
            Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
        Length = 371

 Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>UNIPROTKB|Q800W4 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0042036 "negative regulation of cytokine biosynthetic process"
            evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
            UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
            EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
            RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
            Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
            InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
        Length = 372

 Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:    97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   157 GGQWLGGRQIRTNWA 171


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 125 (49.1 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:    99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   159 GGQWLGGRQIRTNWA 173


>RGD|1305742 [details] [associations]
            symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
            translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
            RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
            Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
            UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
            Uniprot:Q5PQR7
        Length = 375

 Score = 125 (49.1 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:    97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   157 GGQWLGGRQIRTNWA 171


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:    99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   159 GGQWLGGRQIRTNWA 173


>UNIPROTKB|D4A6U8 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
            OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
            Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
        Length = 382

 Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   164 GGQWLGGRQIRTNWA 178


>UNIPROTKB|Q0VBZ6 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
            regulation of cytokine biosynthetic process" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
            GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
            HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
            OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
            IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
            Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
            InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
        Length = 384

 Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>UNIPROTKB|F8W8I6 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
            ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
            Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
            Uniprot:F8W8I6
        Length = 385

 Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>ZFIN|ZDB-GENE-050522-496 [details] [associations]
            symbol:rbm14a "RNA binding motif protein 14a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
            EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
            UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
            Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
            HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
            OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
        Length = 471

 Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 36/119 (30%), Positives = 55/119 (46%)

Query:    57 PSKST-VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             P  ST V+V NL  + +  DL+ LFS +GK+     +K + +  + G AF+      DA 
Sbjct:    79 PLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLT-GYAFVYMEHKEDAE 137

Query:   116 SAARAIHGKVLNGRTVNASIAADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ 174
              A   +HG    GR +   ++          K +   +K  C  CG  GH + ECP N+
Sbjct:   138 QAIEGLHGTTFMGRPLAVELS----------KVQQSTNKVPCASCGAHGHFAGECPINR 186


>UNIPROTKB|P31483 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
            element binding" evidence=IEA] [GO:0017148 "negative regulation of
            translation" evidence=IEA] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0048024 "regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
            [GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
            GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
            EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
            PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
            PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
            IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
            PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
            Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
            UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
            MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
            InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
            EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
            ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
            Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
        Length = 386

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>MGI|MGI:107914 [details] [associations]
            symbol:Tia1 "cytotoxic granule-associated RNA binding protein
            1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
            evidence=IDA] [GO:0017148 "negative regulation of translation"
            evidence=IMP] [GO:0042036 "negative regulation of cytokine
            biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
            GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
            EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
            UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
            ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
            PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
            Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
            InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
            NextBio:301304 Bgee:P52912 Genevestigator:P52912
            GermOnline:ENSMUSG00000071337 Uniprot:P52912
        Length = 386

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>UNIPROTKB|F1NY49 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
            Uniprot:F1NY49
        Length = 388

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   175 GGQWLGGRQIRTNWA 189


>UNIPROTKB|F1NS94 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
            Uniprot:F1NS94
        Length = 389

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>ASPGD|ASPL0000065384 [details] [associations]
            symbol:AN7706 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
            KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
            ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
            GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
            Uniprot:Q5AVH4
        Length = 328

 Score = 124 (48.7 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 29/86 (33%), Positives = 47/86 (54%)

Query:    56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDAL 115
             A + + + + NL Y +T +DL  LFS  G I+ V+++ DRA R S GVA++ + +  DA 
Sbjct:    82 ASAGTRLRIENLHYDITETDLEELFSRIGPISNVSLVYDRAGR-SEGVAYVTYSRYNDAK 140

Query:   116 SAARAIHGKVLNGRTVNASIAADNGR 141
             +A     G    G+ +  SI +   R
Sbjct:   141 TAIAEFDGANAKGQPIRISITSSGPR 166


>UNIPROTKB|E2RA41 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
            cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
            ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
            GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
        Length = 392

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>UNIPROTKB|F2Z5F9 [details] [associations]
            symbol:LOC100736782 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
            ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
            GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
        Length = 392

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>MGI|MGI:107913 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
            division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
            GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
            EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
            UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
            IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
            PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
            InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
            Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
        Length = 392

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>RGD|1595845 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
            "positive regulation of cell proliferation" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
            division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
            EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
            STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
            InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
            Uniprot:Q5BJN3
        Length = 392

 Score = 125 (49.1 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+ + F+ FGKI+   V+KD AT KS+G  F+ F    DA +A   +
Sbjct:   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   176 GGQWLGGRQIRTNWA 190


>UNIPROTKB|F1PWU8 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
            EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
        Length = 393

 Score = 125 (49.1 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query:    62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121
             V+V +L   +T  D+   F+ FG+I+   V+KD AT KS+G  F+ F    DA +A + +
Sbjct:   108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query:   122 HGKVLNGRTVNASIA 136
              G+ L GR +  + A
Sbjct:   168 GGQWLGGRQIRTNWA 182


>ZFIN|ZDB-GENE-070928-29 [details] [associations]
            symbol:alyref "Aly/REF export factor" species:7955
            "Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
            GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
            IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
            Bgee:F1Q9D1 Uniprot:F1Q9D1
        Length = 280

 Score = 123 (48.4 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123
             VSNLD+ ++++D+  LF+ FG + +  V  DR+ R S G A + F +  DAL A +  +G
Sbjct:   129 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQYNG 187

Query:   124 KVLNGRTVNASI 135
               L+GR +N  +
Sbjct:   188 VPLDGRPMNIQL 199

WARNING:  HSPs involving 491 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       182   0.00098  109 3  11 22  0.45    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  741
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.75u 0.10s 17.85t   Elapsed:  00:00:01
  Total cpu time:  17.77u 0.10s 17.87t   Elapsed:  00:00:01
  Start:  Thu May  9 19:31:50 2013   End:  Thu May  9 19:31:51 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with U11/U12-31K U11/U12-31K U11/U12-31K AT3G10400	protein from Arabidopsis thaliana	4.8e-64
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Canis lupus familiaris	5.9e-44
BLAST match view associations BLAST with Zcrb1 Zcrb1 Zcrb1 zinc finger CCHC-type and RNA binding motif 1	gene from Rattus norvegicus	5.9e-44
BLAST match view associations BLAST with Zcrb1 Zcrb1 Zcrb1 zinc finger CCHC-type and RNA binding motif 1	protein from Mus musculus	5.9e-44
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Gallus gallus	5.9e-44
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Bos taurus	5.2e-43
BLAST match view associations BLAST with zcrb1 zcrb1 zcrb1 zinc finger CCHC-type and RNA binding motif 1	gene_product from Danio rerio	8.5e-43
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	5.9e-29
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1	protein from Homo sapiens	8.4e-26
BLAST match view associations BLAST with ZCRB1 ZCRB1 ZCRB1 Uncharacterized protein	protein from Sus scrofa	1.2e-17
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Sus scrofa	1.0e-13
BLAST match view associations BLAST with Srsf7 Srsf7 Srsf7 serine/arginine-rich splicing factor 7	protein from Mus musculus	1.6e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich splicing factor 7	protein from Bos taurus	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Canis lupus familiaris	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich-splicing factor 7	protein from Homo sapiens	4.4e-13
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Serine/arginine-rich splicing factor 7	protein from Homo sapiens	4.4e-13
BLAST match view associations BLAST with Srsf7 Srsf7 Srsf7 serine/arginine-rich splicing factor 7	gene from Rattus norvegicus	4.4e-13
BLAST match view associations BLAST with RSZ21 RSZ21 RSZ21 RS-containing zinc finger protein 21	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with SRSF7 SRSF7 SRSF7 Uncharacterized protein	protein from Gallus gallus	5.0e-12
BLAST match view associations BLAST with srsf7b srsf7b srsf7b serine/arginine-rich splicing factor 7b	gene_product from Danio rerio	6.4e-12
BLAST match view associations BLAST with srsf7a srsf7a srsf7a serine/arginine-rich splicing factor 7a	gene_product from Danio rerio	2.3e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	7.4e-11
BLAST match view associations BLAST with RSZ23 RSZ23 RSZ23 Serine/arginine-rich splicing factor RSZ23	protein from Oryza sativa Japonica Group	9.4e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	9.4e-11
BLAST match view associations BLAST with LOC100859609 LOC100859609 LOC100859609 Uncharacterized protein	protein from Gallus gallus	1.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.2e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.2e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	3.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.2e-10
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	3.6e-10
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.1e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	4.1e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	4.1e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	4.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	5.2e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.2e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	5.2e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	5.2e-10
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA binding protein	protein from Coxiella burnetii RSA 493	6.6e-10
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA-binding protein	protein from Coxiella burnetii RSA 493	6.6e-10
BLAST match view associations BLAST with LOC100859609 LOC100859609 LOC100859609 Uncharacterized protein	protein from Gallus gallus	8.6e-10
BLAST match view associations BLAST with rbm4.1 rbm4.1 rbm4.1 RNA binding motif protein 4.1	gene_product from Danio rerio	1.3e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with Pabpn1l-b Pabpn1l-b Pabpn1l-b Embryonic polyadenylate-binding protein 2-B	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.8e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.8e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-09
BLAST match view associations BLAST with RSZ22a RSZ22a RSZ22a RS-containing zinc finger protein 22a	protein from Arabidopsis thaliana	2.9e-09
BLAST match view associations BLAST with RSZ22 RSZ22 RSZ22 RS-containing zinc finger protein 22	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with rbm14b rbm14b rbm14b RNA binding motif protein 14b	gene_product from Danio rerio	4.4e-09
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	5.0e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	5.8e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with tia1l tia1l tia1l cytotoxic granule-associated RNA binding protein 1, like	gene_product from Danio rerio	6.3e-09
BLAST match view associations BLAST with Pabpn1l-a Pabpn1l-a Pabpn1l-a Embryonic polyadenylate-binding protein 2-A	protein from Xenopus laevis	6.6e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	7.6e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.2e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.5e-09
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	9.8e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA binding motif protein, X-linked	gene_product from Danio rerio	1.0e-08
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.0e-08
BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	1.2e-08
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	1.2e-08
BLAST match view associations BLAST with orf19.1389 orf19.1389 orf19.1389	gene_product from Candida albicans	1.6e-08
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.6e-08