Query 026078
Match_columns 244
No_of_seqs 338 out of 2613
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 4.3E-20 9.2E-25 145.8 16.6 86 56-141 31-116 (144)
2 KOG0107 Alternative splicing f 99.8 2.4E-19 5.2E-24 141.5 13.5 111 57-172 8-118 (195)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.6E-17 3.5E-22 148.7 14.9 84 57-140 267-350 (352)
4 TIGR01659 sex-lethal sex-letha 99.7 6.7E-17 1.5E-21 144.5 14.2 84 55-138 103-186 (346)
5 KOG0121 Nuclear cap-binding pr 99.7 3.2E-17 6.9E-22 123.4 7.8 80 57-136 34-113 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.8E-17 1.5E-21 144.7 11.5 83 58-140 2-84 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.3E-21 109.1 9.8 70 62-132 1-70 (70)
8 KOG0113 U1 small nuclear ribon 99.7 4.2E-16 9.2E-21 132.3 14.4 93 56-149 98-190 (335)
9 KOG0122 Translation initiation 99.7 5.1E-16 1.1E-20 128.6 12.9 82 58-139 188-269 (270)
10 TIGR01659 sex-lethal sex-letha 99.7 1.1E-15 2.5E-20 136.6 16.0 85 58-142 192-278 (346)
11 KOG4207 Predicted splicing fac 99.7 7.1E-16 1.5E-20 124.9 10.8 82 58-139 12-93 (256)
12 KOG0149 Predicted RNA-binding 99.6 2.4E-16 5.3E-21 129.9 6.8 81 57-138 10-90 (247)
13 TIGR01645 half-pint poly-U bin 99.6 3E-15 6.4E-20 141.3 11.5 153 58-220 106-265 (612)
14 PF14259 RRM_6: RNA recognitio 99.6 6.4E-15 1.4E-19 101.6 10.1 70 62-132 1-70 (70)
15 TIGR01622 SF-CC1 splicing fact 99.6 2.5E-14 5.5E-19 132.5 16.0 155 56-220 86-247 (457)
16 PLN03120 nucleic acid binding 99.6 8.6E-15 1.9E-19 124.2 11.2 77 59-139 4-80 (260)
17 KOG0126 Predicted RNA-binding 99.6 2.1E-16 4.5E-21 125.6 1.1 82 56-137 32-113 (219)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.7E-14 5.9E-19 134.0 15.2 83 57-139 293-375 (509)
19 KOG0117 Heterogeneous nuclear 99.6 8.5E-15 1.8E-19 130.3 10.6 89 51-139 75-164 (506)
20 KOG0125 Ataxin 2-binding prote 99.6 1.4E-14 3E-19 124.5 11.6 80 58-139 95-174 (376)
21 TIGR01645 half-pint poly-U bin 99.6 9.8E-15 2.1E-19 137.9 11.7 83 58-140 203-285 (612)
22 TIGR01622 SF-CC1 splicing fact 99.6 1.6E-14 3.4E-19 133.9 11.9 83 57-139 184-266 (457)
23 KOG0105 Alternative splicing f 99.6 1.9E-14 4.1E-19 114.9 9.5 78 58-138 5-82 (241)
24 PLN03213 repressor of silencin 99.6 1.4E-14 3.1E-19 130.3 9.8 77 58-138 9-87 (759)
25 KOG0111 Cyclophilin-type pepti 99.6 2.6E-15 5.7E-20 122.7 4.5 84 56-139 7-90 (298)
26 TIGR01628 PABP-1234 polyadenyl 99.6 2.1E-14 4.5E-19 136.6 11.2 79 60-138 1-79 (562)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3E-18 129.8 15.9 75 59-141 233-309 (578)
28 KOG0109 RNA-binding protein LA 99.5 1.2E-14 2.7E-19 123.1 7.7 109 57-178 76-184 (346)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 3.5E-14 7.6E-19 133.8 11.1 81 56-137 55-136 (578)
30 KOG0130 RNA-binding protein RB 99.5 1.7E-14 3.6E-19 109.7 7.2 83 57-139 70-152 (170)
31 KOG0148 Apoptosis-promoting RN 99.5 3.4E-14 7.3E-19 119.4 9.7 79 56-140 161-239 (321)
32 PLN03121 nucleic acid binding 99.5 5.2E-14 1.1E-18 117.8 10.7 78 57-138 3-80 (243)
33 smart00362 RRM_2 RNA recogniti 99.5 8.3E-14 1.8E-18 94.6 9.4 72 61-134 1-72 (72)
34 TIGR01628 PABP-1234 polyadenyl 99.5 7.4E-14 1.6E-18 132.8 11.3 82 57-139 283-364 (562)
35 COG0724 RNA-binding proteins ( 99.5 1E-13 2.2E-18 117.3 10.4 80 59-138 115-194 (306)
36 KOG0131 Splicing factor 3b, su 99.5 4.3E-14 9.2E-19 112.6 6.9 115 57-183 7-128 (203)
37 smart00360 RRM RNA recognition 99.5 1.7E-13 3.7E-18 92.6 8.6 71 64-134 1-71 (71)
38 KOG0114 Predicted RNA-binding 99.5 2.4E-13 5.3E-18 98.9 9.7 80 56-138 15-94 (124)
39 KOG0415 Predicted peptidyl pro 99.5 2.6E-13 5.6E-18 117.9 10.6 87 55-141 235-321 (479)
40 KOG0148 Apoptosis-promoting RN 99.5 1.6E-13 3.4E-18 115.4 8.8 82 59-140 62-143 (321)
41 KOG0145 RNA-binding protein EL 99.5 5.1E-13 1.1E-17 111.9 11.3 84 56-139 38-121 (360)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1E-12 2.3E-17 122.8 14.2 79 56-139 272-351 (481)
43 cd00590 RRM RRM (RNA recogniti 99.5 8.3E-13 1.8E-17 90.0 10.1 74 61-135 1-74 (74)
44 KOG0108 mRNA cleavage and poly 99.5 1.7E-13 3.7E-18 124.8 8.2 82 60-141 19-100 (435)
45 KOG0127 Nucleolar protein fibr 99.5 7.4E-13 1.6E-17 120.5 12.1 88 56-143 289-382 (678)
46 KOG0144 RNA-binding protein CU 99.4 4.5E-13 9.8E-18 118.9 10.1 83 56-138 31-116 (510)
47 KOG0146 RNA-binding protein ET 99.4 2.1E-13 4.6E-18 114.6 5.9 87 54-140 280-366 (371)
48 KOG0145 RNA-binding protein EL 99.4 2.4E-12 5.3E-17 107.8 10.7 82 58-139 277-358 (360)
49 KOG0127 Nucleolar protein fibr 99.4 1.2E-12 2.7E-17 119.1 9.0 84 57-141 115-198 (678)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.9E-12 4.1E-17 121.0 10.5 75 58-138 1-77 (481)
51 KOG0124 Polypyrimidine tract-b 99.4 3E-13 6.6E-18 117.9 4.8 79 60-138 114-192 (544)
52 KOG0117 Heterogeneous nuclear 99.4 5E-12 1.1E-16 112.8 11.6 76 60-143 260-335 (506)
53 KOG0109 RNA-binding protein LA 99.4 2E-12 4.4E-17 109.8 7.9 73 60-140 3-75 (346)
54 KOG0144 RNA-binding protein CU 99.4 8.9E-13 1.9E-17 117.1 5.7 83 57-140 122-207 (510)
55 smart00361 RRM_1 RNA recogniti 99.3 6E-12 1.3E-16 87.1 8.2 62 73-134 2-70 (70)
56 PF13893 RRM_5: RNA recognitio 99.3 8.3E-12 1.8E-16 82.4 8.4 56 76-136 1-56 (56)
57 KOG0147 Transcriptional coacti 99.3 3.4E-12 7.4E-17 116.4 6.7 84 60-143 279-362 (549)
58 KOG4212 RNA-binding protein hn 99.3 1.3E-10 2.8E-15 103.6 15.0 84 57-141 42-126 (608)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.3 5E-11 1.1E-15 111.9 12.2 76 56-138 172-259 (509)
60 KOG0131 Splicing factor 3b, su 99.3 9.9E-12 2.1E-16 99.2 6.1 83 58-140 95-178 (203)
61 KOG0132 RNA polymerase II C-te 99.2 8.4E-11 1.8E-15 111.0 11.7 79 59-143 421-499 (894)
62 KOG4206 Spliceosomal protein s 99.2 3.8E-11 8.3E-16 98.9 8.1 82 57-141 7-92 (221)
63 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.1E-10 2.4E-15 107.0 11.5 84 57-140 403-486 (940)
64 KOG4208 Nucleolar RNA-binding 99.2 6.4E-11 1.4E-15 96.3 8.1 84 56-139 46-130 (214)
65 KOG0116 RasGAP SH3 binding pro 99.2 6.9E-10 1.5E-14 100.9 15.1 82 58-140 287-368 (419)
66 KOG0110 RNA-binding protein (R 99.0 2.5E-10 5.5E-15 107.0 5.8 84 58-141 612-695 (725)
67 KOG0123 Polyadenylate-binding 99.0 9.5E-10 2.1E-14 99.3 8.5 77 61-140 78-154 (369)
68 KOG0110 RNA-binding protein (R 99.0 1E-09 2.2E-14 103.0 8.6 79 59-137 515-596 (725)
69 KOG4205 RNA-binding protein mu 99.0 3.7E-10 7.9E-15 99.1 5.2 82 58-140 5-86 (311)
70 KOG0153 Predicted RNA-binding 99.0 1.4E-09 3E-14 94.7 8.5 75 58-138 227-302 (377)
71 KOG0123 Polyadenylate-binding 99.0 1.2E-09 2.7E-14 98.6 8.4 76 60-141 2-77 (369)
72 KOG0533 RRM motif-containing p 99.0 1.9E-09 4E-14 91.4 8.8 84 56-140 80-163 (243)
73 KOG0124 Polypyrimidine tract-b 99.0 1.3E-09 2.9E-14 95.3 7.6 81 59-139 210-290 (544)
74 KOG4212 RNA-binding protein hn 99.0 1.7E-09 3.8E-14 96.6 8.2 78 54-136 531-608 (608)
75 KOG0151 Predicted splicing reg 99.0 2.2E-09 4.8E-14 100.7 8.7 86 54-139 169-257 (877)
76 KOG4209 Splicing factor RNPS1, 99.0 4E-09 8.6E-14 89.3 9.4 83 56-139 98-180 (231)
77 KOG4205 RNA-binding protein mu 98.9 2.6E-09 5.7E-14 93.8 7.9 82 59-141 97-178 (311)
78 KOG1457 RNA binding protein (c 98.9 1.8E-08 3.8E-13 83.2 11.8 85 59-143 34-122 (284)
79 KOG0146 RNA-binding protein ET 98.9 2.7E-09 5.9E-14 90.0 7.0 81 58-139 18-101 (371)
80 KOG1995 Conserved Zn-finger pr 98.9 8.3E-09 1.8E-13 90.4 9.9 86 56-141 63-156 (351)
81 KOG1548 Transcription elongati 98.9 1.3E-08 2.8E-13 88.7 10.7 83 56-139 131-221 (382)
82 KOG0106 Alternative splicing f 98.8 2.9E-09 6.2E-14 88.5 4.5 72 60-139 2-73 (216)
83 KOG4454 RNA binding protein (R 98.8 2.9E-09 6.3E-14 87.5 2.2 81 56-138 6-86 (267)
84 PF04059 RRM_2: RNA recognitio 98.7 1.2E-07 2.6E-12 69.5 9.0 79 60-138 2-86 (97)
85 KOG0226 RNA-binding proteins [ 98.6 3.4E-08 7.5E-13 82.8 4.5 82 58-139 189-270 (290)
86 KOG4211 Splicing factor hnRNP- 98.5 5.4E-07 1.2E-11 81.9 10.1 109 59-173 10-118 (510)
87 KOG4660 Protein Mei2, essentia 98.5 9.1E-08 2E-12 88.0 5.1 72 56-132 72-143 (549)
88 KOG0120 Splicing factor U2AF, 98.5 1.8E-07 3.9E-12 86.4 6.4 85 55-139 285-369 (500)
89 KOG1190 Polypyrimidine tract-b 98.4 2.1E-06 4.6E-11 76.5 11.1 75 59-138 297-372 (492)
90 KOG1457 RNA binding protein (c 98.4 2.9E-07 6.2E-12 76.1 4.1 69 54-126 205-273 (284)
91 KOG0147 Transcriptional coacti 98.4 1.5E-07 3.3E-12 86.4 2.5 81 56-137 176-256 (549)
92 PF11608 Limkain-b1: Limkain b 98.3 2.8E-06 6E-11 60.0 7.4 68 60-137 3-75 (90)
93 KOG4210 Nuclear localization s 98.3 5.9E-07 1.3E-11 78.5 4.5 82 60-142 185-267 (285)
94 KOG4849 mRNA cleavage factor I 98.3 1.8E-06 3.8E-11 75.7 7.1 75 59-133 80-156 (498)
95 PF08777 RRM_3: RNA binding mo 98.1 8.6E-06 1.9E-10 60.7 5.9 71 59-135 1-76 (105)
96 KOG0106 Alternative splicing f 98.1 3.2E-06 6.9E-11 70.4 3.3 72 56-135 96-167 (216)
97 KOG4206 Spliceosomal protein s 98.0 2.2E-05 4.8E-10 65.1 8.0 80 53-137 140-220 (221)
98 KOG4211 Splicing factor hnRNP- 98.0 1.3E-05 2.8E-10 73.1 7.2 77 58-136 102-179 (510)
99 COG5175 MOT2 Transcriptional r 98.0 2.8E-05 6.1E-10 68.0 7.5 84 54-137 109-201 (480)
100 KOG2314 Translation initiation 97.9 5E-05 1.1E-09 70.4 7.8 79 58-137 57-142 (698)
101 KOG1456 Heterogeneous nuclear 97.8 0.00014 3.1E-09 64.5 9.5 81 54-139 282-363 (494)
102 KOG4307 RNA binding protein RB 97.7 0.00025 5.3E-09 67.4 9.4 76 59-135 867-943 (944)
103 KOG0105 Alternative splicing f 97.6 0.001 2.2E-08 53.9 11.0 75 57-138 113-189 (241)
104 KOG1190 Polypyrimidine tract-b 97.6 0.0002 4.3E-09 64.2 7.5 81 54-138 409-490 (492)
105 KOG3152 TBP-binding protein, a 97.6 4.3E-05 9.3E-10 64.5 2.6 71 60-130 75-157 (278)
106 KOG2416 Acinus (induces apopto 97.5 0.00045 9.8E-09 64.6 8.5 77 55-137 440-520 (718)
107 PF08952 DUF1866: Domain of un 97.5 0.00077 1.7E-08 52.8 8.5 75 55-138 23-106 (146)
108 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00034 7.3E-09 45.5 5.2 52 60-118 2-53 (53)
109 KOG1456 Heterogeneous nuclear 97.4 0.011 2.5E-07 52.7 15.5 79 56-139 117-199 (494)
110 KOG0129 Predicted RNA-binding 97.4 0.00043 9.3E-09 63.8 6.8 65 56-120 367-432 (520)
111 KOG1548 Transcription elongati 97.4 0.00075 1.6E-08 59.4 7.6 78 56-137 262-350 (382)
112 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.0013 2.8E-08 48.5 7.8 77 59-137 6-90 (100)
113 KOG0112 Large RNA-binding prot 97.4 0.00054 1.2E-08 66.8 7.3 81 55-141 451-533 (975)
114 KOG0120 Splicing factor U2AF, 97.3 0.00088 1.9E-08 62.4 7.7 61 76-136 426-489 (500)
115 KOG1365 RNA-binding protein Fu 97.2 0.00047 1E-08 61.5 4.9 77 59-136 280-359 (508)
116 KOG4676 Splicing factor, argin 97.1 0.00069 1.5E-08 60.5 5.2 77 61-138 9-88 (479)
117 KOG1855 Predicted RNA-binding 97.1 0.00036 7.8E-09 62.9 3.4 68 56-123 228-308 (484)
118 KOG0128 RNA-binding protein SA 97.1 0.00052 1.1E-08 66.5 4.1 79 59-138 736-814 (881)
119 KOG0129 Predicted RNA-binding 97.1 0.0032 7E-08 58.1 8.9 65 57-122 257-327 (520)
120 KOG0128 RNA-binding protein SA 96.9 7.4E-05 1.6E-09 72.2 -3.4 69 59-127 667-735 (881)
121 KOG1996 mRNA splicing factor [ 96.6 0.0067 1.5E-07 52.5 6.9 64 74-137 301-365 (378)
122 PF08675 RNA_bind: RNA binding 96.6 0.018 3.8E-07 40.8 7.5 56 58-122 8-63 (87)
123 KOG1365 RNA-binding protein Fu 96.5 0.002 4.3E-08 57.6 3.0 73 61-135 163-239 (508)
124 KOG2193 IGF-II mRNA-binding pr 96.5 0.0026 5.7E-08 57.5 3.7 74 60-139 2-76 (584)
125 KOG2068 MOT2 transcription fac 96.5 0.0011 2.3E-08 58.3 1.1 83 56-138 74-162 (327)
126 KOG2202 U2 snRNP splicing fact 96.4 0.0014 3.1E-08 55.5 1.6 62 75-137 84-146 (260)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.014 3.1E-07 47.5 6.7 81 58-138 6-97 (176)
128 PF10309 DUF2414: Protein of u 96.3 0.025 5.3E-07 37.9 6.6 55 59-121 5-62 (62)
129 KOG4307 RNA binding protein RB 96.3 0.0047 1E-07 59.0 4.2 81 56-137 431-512 (944)
130 KOG2135 Proteins containing th 96.2 0.003 6.5E-08 57.8 2.3 76 57-139 370-446 (526)
131 PF03880 DbpA: DbpA RNA bindin 96.1 0.028 6.1E-07 38.9 6.6 67 61-136 2-74 (74)
132 PF15023 DUF4523: Protein of u 96.1 0.029 6.4E-07 43.7 7.1 76 54-137 81-160 (166)
133 KOG2253 U1 snRNP complex, subu 95.9 0.011 2.4E-07 56.2 4.9 81 46-135 27-107 (668)
134 KOG0115 RNA-binding protein p5 95.8 0.012 2.6E-07 50.0 4.1 75 60-135 32-110 (275)
135 PF07576 BRAP2: BRCA1-associat 95.8 0.15 3.3E-06 38.2 9.6 67 60-128 14-81 (110)
136 KOG0112 Large RNA-binding prot 95.7 0.0022 4.7E-08 62.8 -0.6 78 58-136 371-448 (975)
137 KOG4574 RNA-binding protein (c 94.9 0.036 7.8E-07 54.2 4.7 75 59-139 298-374 (1007)
138 KOG4210 Nuclear localization s 94.7 0.06 1.3E-06 47.2 5.2 82 58-139 87-168 (285)
139 PRK11634 ATP-dependent RNA hel 94.5 0.93 2E-05 44.2 13.4 71 60-139 487-563 (629)
140 PF04847 Calcipressin: Calcipr 94.2 0.21 4.6E-06 40.9 7.1 61 72-138 8-70 (184)
141 KOG4285 Mitotic phosphoprotein 93.8 0.22 4.7E-06 43.5 6.7 72 60-139 198-270 (350)
142 KOG4660 Protein Mei2, essentia 93.6 0.12 2.6E-06 48.5 5.0 81 59-139 361-473 (549)
143 KOG0804 Cytoplasmic Zn-finger 93.3 0.32 6.9E-06 44.7 7.2 69 58-128 73-142 (493)
144 KOG2591 c-Mpl binding protein, 91.7 0.32 7E-06 45.8 5.2 70 57-133 173-246 (684)
145 PF11767 SET_assoc: Histone ly 90.3 2.3 5E-05 28.8 7.1 55 70-133 11-65 (66)
146 KOG2318 Uncharacterized conser 89.6 1.5 3.2E-05 41.7 7.6 81 56-136 171-305 (650)
147 KOG4410 5-formyltetrahydrofola 87.5 2.3 4.9E-05 37.1 6.7 54 52-111 323-377 (396)
148 KOG4676 Splicing factor, argin 82.5 0.15 3.4E-06 45.9 -2.6 73 60-137 152-224 (479)
149 PF00098 zf-CCHC: Zinc knuckle 73.9 2.6 5.7E-05 20.8 1.5 16 156-171 2-17 (18)
150 KOG4483 Uncharacterized conser 73.1 8 0.00017 35.3 5.3 55 59-120 391-446 (528)
151 KOG2193 IGF-II mRNA-binding pr 71.1 0.15 3.2E-06 46.5 -6.0 76 59-138 80-156 (584)
152 COG0724 RNA-binding proteins ( 69.8 5.8 0.00013 32.7 3.7 64 55-118 221-284 (306)
153 PF03468 XS: XS domain; Inter 69.3 11 0.00024 28.4 4.7 56 61-119 10-75 (116)
154 PF03522 KCl_Cotrans_1: K-Cl C 66.0 2.8 6E-05 23.5 0.6 14 231-244 9-22 (30)
155 smart00596 PRE_C2HC PRE_C2HC d 63.8 15 0.00032 25.1 3.9 61 74-137 2-63 (69)
156 KOG4454 RNA binding protein (R 62.7 1.6 3.4E-05 36.7 -1.1 68 58-126 79-150 (267)
157 KOG2295 C2H2 Zn-finger protein 62.5 1.3 2.8E-05 41.9 -1.8 71 57-127 229-299 (648)
158 KOG4019 Calcineurin-mediated s 61.9 8.7 0.00019 31.3 3.0 75 60-140 11-91 (193)
159 PF07530 PRE_C2HC: Associated 61.5 20 0.00044 24.3 4.4 62 74-138 2-64 (68)
160 KOG2891 Surface glycoprotein [ 61.2 2.7 5.8E-05 36.6 -0.0 67 59-125 149-246 (445)
161 KOG4365 Uncharacterized conser 60.0 1.5 3.3E-05 40.3 -1.8 78 60-138 4-81 (572)
162 KOG1295 Nonsense-mediated deca 57.3 15 0.00033 33.3 4.1 68 59-126 7-77 (376)
163 PF10567 Nab6_mRNP_bdg: RNA-re 56.5 32 0.00069 30.3 5.7 81 56-136 12-105 (309)
164 PRK11901 hypothetical protein; 53.2 91 0.002 27.9 8.1 61 58-123 244-306 (327)
165 PF09707 Cas_Cas2CT1978: CRISP 45.5 41 0.00088 24.0 3.9 49 58-109 24-72 (86)
166 PF13917 zf-CCHC_3: Zinc knuck 42.6 17 0.00038 22.2 1.4 19 154-172 4-22 (42)
167 COG5638 Uncharacterized conser 41.3 95 0.0021 28.8 6.4 34 103-136 260-295 (622)
168 COG0030 KsgA Dimethyladenosine 37.7 34 0.00075 29.6 3.1 34 60-93 96-129 (259)
169 PF15513 DUF4651: Domain of un 33.3 80 0.0017 21.1 3.6 19 74-92 9-27 (62)
170 KOG4008 rRNA processing protei 31.9 40 0.00086 28.8 2.4 33 56-88 37-69 (261)
171 PRK11558 putative ssRNA endonu 30.5 75 0.0016 23.2 3.4 51 58-111 26-76 (97)
172 COG5193 LHP1 La protein, small 30.5 23 0.00049 32.5 0.8 61 59-119 174-244 (438)
173 PF07292 NID: Nmi/IFP 35 domai 29.6 39 0.00083 24.2 1.7 24 57-80 50-73 (88)
174 PRK11230 glycolate oxidase sub 28.9 1.9E+02 0.0041 27.5 6.8 64 58-122 188-255 (499)
175 PF02714 DUF221: Domain of unk 28.8 70 0.0015 28.1 3.7 33 104-138 1-33 (325)
176 PF00398 RrnaAD: Ribosomal RNA 27.4 57 0.0012 27.9 2.8 28 59-86 97-126 (262)
177 KOG0156 Cytochrome P450 CYP2 s 24.9 1.2E+02 0.0026 28.8 4.6 59 63-131 36-97 (489)
178 KOG3702 Nuclear polyadenylated 24.7 1.3E+02 0.0027 29.6 4.7 71 60-131 512-582 (681)
179 PF05189 RTC_insert: RNA 3'-te 24.6 2.2E+02 0.0047 20.5 5.1 49 61-109 12-65 (103)
180 TIGR01873 cas_CT1978 CRISPR-as 24.1 56 0.0012 23.4 1.7 50 58-110 24-74 (87)
181 PRK10905 cell division protein 24.0 2.6E+02 0.0056 25.1 6.2 61 58-123 246-308 (328)
182 KOG4213 RNA-binding protein La 22.8 1E+02 0.0022 25.2 3.2 70 60-135 112-183 (205)
183 PRK00274 ksgA 16S ribosomal RN 22.8 80 0.0017 27.2 2.8 22 61-82 107-128 (272)
184 PF03439 Spt5-NGN: Early trans 22.3 1.5E+02 0.0031 20.7 3.6 26 100-125 43-68 (84)
185 PTZ00338 dimethyladenosine tra 21.8 75 0.0016 27.9 2.5 27 61-87 103-129 (294)
186 TIGR00755 ksgA dimethyladenosi 20.8 1.2E+02 0.0027 25.6 3.6 25 61-85 96-120 (253)
187 PF11823 DUF3343: Protein of u 20.8 1.2E+02 0.0025 20.4 2.8 24 103-126 3-26 (73)
188 PRK14548 50S ribosomal protein 20.3 3.2E+02 0.007 19.3 6.3 57 61-120 22-80 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=4.3e-20 Score=145.75 Aligned_cols=86 Identities=28% Similarity=0.515 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.|++++|||||+|.+.++|+.||..||++.|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.4e-19 Score=141.52 Aligned_cols=111 Identities=30% Similarity=0.552 Sum_probs=90.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+-.++|||+||+..+++.+|+.+|..||.|..|.|-.+ +.|||||+|+++.+|..|+..|+|..|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34699999999999999999999999999999999775 5689999999999999999999999999999999999
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 026078 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR 172 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 172 (244)
.-..+.......+...+..-|+.||..|++.+.|..
T Consensus 83 ~G~~r~~r~gg~~~~~g~~~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 83 TGRPRGSRRGGSRPPRGRGFCYRCGERGHIGRNCKD 118 (195)
T ss_pred cCCccccccCCCCCcccccccccCCCcccccccccc
Confidence 876553321111111222337889999999887754
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=1.6e-17 Score=148.69 Aligned_cols=84 Identities=23% Similarity=0.437 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..+.+|||+|||+.+++++|.++|++||.|..|+|+.++.|+.++|||||+|.+.++|..||..|||..|.|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
.++.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=6.7e-17 Score=144.49 Aligned_cols=84 Identities=26% Similarity=0.392 Sum_probs=80.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.....++|||+|||+++|+++|+++|..||.|..|+|+.|+.|++++|||||+|.+.++|..||..||+..|.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC
Q 026078 135 IAAD 138 (244)
Q Consensus 135 ~a~~ 138 (244)
++.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 9865
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.2e-17 Score=123.39 Aligned_cols=80 Identities=31% Similarity=0.478 Sum_probs=77.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..+++|||+||++.++|++|.++|+++|.|..|.|-.|+.+..+.|||||+|.+.++|..||+.++|..|+.++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999995
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=6.8e-17 Score=144.66 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||..+++++|+++|+.||+|..|.|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 643
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.5e-16 Score=109.07 Aligned_cols=70 Identities=39% Similarity=0.700 Sum_probs=67.1
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
|||+|||..+|+++|.++|++||.|..+.+..+ .++..++||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.2e-16 Score=132.30 Aligned_cols=93 Identities=26% Similarity=0.518 Sum_probs=83.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+-+||||+-|++.++|..|+..|+.||+|..|.|+.++.||+++|||||+|.+..++..|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccc
Q 026078 136 AADNGRASSFIKKR 149 (244)
Q Consensus 136 a~~~~~~~~~~~~~ 149 (244)
-...+. ..|..++
T Consensus 178 ERgRTv-kgW~PRR 190 (335)
T KOG0113|consen 178 ERGRTV-KGWLPRR 190 (335)
T ss_pred cccccc-ccccccc
Confidence 765432 2344444
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.1e-16 Score=128.59 Aligned_cols=82 Identities=30% Similarity=0.465 Sum_probs=79.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|-|.||+.++++.+|.++|..||.|..|.|..|+.||.++|||||.|.+.++|.+||..|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=1.1e-15 Score=136.60 Aligned_cols=85 Identities=31% Similarity=0.627 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC--eEEEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNASI 135 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~V~~ 135 (244)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||+.||++.|.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999876 7899999
Q ss_pred ccCCCCC
Q 026078 136 AADNGRA 142 (244)
Q Consensus 136 a~~~~~~ 142 (244)
+......
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 9875443
No 11
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=7.1e-16 Score=124.95 Aligned_cols=82 Identities=35% Similarity=0.610 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.-++|-|-||.+.++.++|..+|++||.|-.|.|+.|+.|+.++|||||.|....+|+.|+.+|+|.+|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 54
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.4e-16 Score=129.95 Aligned_cols=81 Identities=25% Similarity=0.514 Sum_probs=74.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..-++||||+|+|.++.+.|+.+|++||.|++..|+.|+.|++++||+||+|.+.+.|.+|++..| -+|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 345899999999999999999999999999999999999999999999999999999999999654 7899999999887
Q ss_pred cC
Q 026078 137 AD 138 (244)
Q Consensus 137 ~~ 138 (244)
--
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 53
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=3e-15 Score=141.35 Aligned_cols=153 Identities=16% Similarity=0.294 Sum_probs=107.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+||++.+++++|+++|..||.|..|.|+.|+.|++++|||||+|.+.++|..||..|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCccCCCCCCCCCCCCCCCCCccccccCc
Q 026078 138 DNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR-------NQLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVDGG 210 (244)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~-------~~~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~~~ 210 (244)
..+....... ........+.+.+.+++...... ..+|....-.-.. +...+...|++.+....
T Consensus 186 ~~p~a~~~~~--~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~--------D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 186 NMPQAQPIID--MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR--------APTGRGHKGYGFIEYNN 255 (612)
T ss_pred cccccccccc--cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEe--------cCCCCCcCCeEEEEECC
Confidence 4322211100 00111123345677888776653 2333321110000 00112345677777776
Q ss_pred hHHHHhhhcc
Q 026078 211 AEERLLLMGE 220 (244)
Q Consensus 211 ~~~~~~~~~~ 220 (244)
.+....+.+.
T Consensus 256 ~e~A~kAI~a 265 (612)
T TIGR01645 256 LQSQSEAIAS 265 (612)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=6.4e-15 Score=101.56 Aligned_cols=70 Identities=39% Similarity=0.695 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 62 VYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 62 lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
|||+|||+.+++++|.++|..||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999999999999874
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=2.5e-14 Score=132.53 Aligned_cols=155 Identities=22% Similarity=0.321 Sum_probs=106.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCccCCCCCCCCCCCCCCCCCcccccc
Q 026078 136 AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQ-------LGPRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208 (244)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~ 208 (244)
+............. .............++|.+.+.... +|....-.-. .+...+...|++.+..
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~--------~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 165 SQAEKNRAAKAATH-QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH--------RDPETGRSKGFGFIQF 235 (457)
T ss_pred cchhhhhhhhcccc-cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE--------EcCCCCccceEEEEEE
Confidence 75432211100000 000111133466778877765432 2221100000 0001123356777777
Q ss_pred CchHHHHhhhcc
Q 026078 209 GGAEERLLLMGE 220 (244)
Q Consensus 209 ~~~~~~~~~~~~ 220 (244)
...+....+..+
T Consensus 236 ~~~e~A~~A~~~ 247 (457)
T TIGR01622 236 HDAEEAKEALEV 247 (457)
T ss_pred CCHHHHHHHHHh
Confidence 777777766654
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=8.6e-15 Score=124.21 Aligned_cols=77 Identities=26% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998853 56899999999999999996 999999999999999864
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.1e-16 Score=125.64 Aligned_cols=82 Identities=27% Similarity=0.553 Sum_probs=77.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...+.-|||||||+.+||.||..+|++||.|+.|.+++|+.||+++||||+.|++..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=2.7e-14 Score=133.98 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+|+++|.++|..||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=8.5e-15 Score=130.26 Aligned_cols=89 Identities=22% Similarity=0.422 Sum_probs=82.2
Q ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee-CCe
Q 026078 51 GSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL-NGR 129 (244)
Q Consensus 51 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i-~gr 129 (244)
..+...+.+|-||||.||.++.|++|.-+|++.|+|..++|+.|+.+|.++|||||.|.+.++|+.||+.||++.| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4445567789999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred EEEEEEccCC
Q 026078 130 TVNASIAADN 139 (244)
Q Consensus 130 ~i~V~~a~~~ 139 (244)
.|.|+.+..+
T Consensus 155 ~igvc~Svan 164 (506)
T KOG0117|consen 155 LLGVCVSVAN 164 (506)
T ss_pred EeEEEEeeec
Confidence 9999887654
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=124.53 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
...+|+|.|||+...+.||..+|.+||.|++|.|+.+- ..+|||+||+|++.++|++|-.+|||..|.||+|.|..|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34789999999999999999999999999999999873 5689999999999999999999999999999999999987
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=9.8e-15 Score=137.86 Aligned_cols=83 Identities=18% Similarity=0.390 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+||+..+++++|+++|+.||.|..|.|..++.+++++|||||+|.+.++|..||..||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
..+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.6e-14 Score=133.93 Aligned_cols=83 Identities=34% Similarity=0.612 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+..++|||+|||..+|+++|.++|+.||.|..|.|+.+..+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
.+.
T Consensus 264 ~~~ 266 (457)
T TIGR01622 264 QDS 266 (457)
T ss_pred cCC
Confidence 743
No 23
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.9e-14 Score=114.93 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+|||.++.+.+|+++|.+||.|..|.|... ....+||||+|+++.+|+.||..-+|..++|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4589999999999999999999999999999988543 2356799999999999999999999999999999999985
Q ss_pred C
Q 026078 138 D 138 (244)
Q Consensus 138 ~ 138 (244)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.4e-14 Score=130.28 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCCh--hHHHHHHHHhCCceeCCeEEEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI--PDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~--~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...+||||||++.+|+++|..+|..||.|..|.|+ +.|| +|||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34799999999999999999999999999999999 5567 89999999987 689999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 976
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.6e-15 Score=122.72 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=80.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++||||+|...|++.-|...|-.||.|..|.|+.|..+++++|||||+|...++|.+||..||+..|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
|+|.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9874
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.1e-14 Score=136.56 Aligned_cols=79 Identities=30% Similarity=0.502 Sum_probs=75.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.+|||+|||.++|+++|.++|+.||.|..|+|+.|..|++++|||||+|.+.++|.+||..||+..|.|+.|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999753
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=1.4e-13 Score=129.75 Aligned_cols=75 Identities=31% Similarity=0.509 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccC--CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTF--GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..+|||+||++.+++++|+++|+.| |.|..|.++. +||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999 9999998754 49999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
++...
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87644
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=123.12 Aligned_cols=109 Identities=29% Similarity=0.593 Sum_probs=96.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|+|+||.+.++.++|+..|.+||+|.+|.|+++ |+||.|...++|..||+.||+.+|.|.+++|+++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 34589999999999999999999999999999999876 9999999999999999999999999999999999
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026078 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRNQLGPR 178 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 178 (244)
..+-+.... -++...|+.||..|||+..||....+..
T Consensus 148 tsrlrtapg-----mgDq~~cyrcGkeghwskEcP~~~~~rv 184 (346)
T KOG0109|consen 148 TSRLRTAPG-----MGDQSGCYRCGKEGHWSKECPVDRTGRV 184 (346)
T ss_pred ccccccCCC-----CCCHHHheeccccccccccCCccCCCcc
Confidence 876555432 3455779999999999999997655543
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=3.5e-14 Score=133.79 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=74.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~i~V~ 134 (244)
....++|||+|||+++++++|.++|++||.|..|+|+.| .+++++|||||+|.+.++|+.||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 344699999999999999999999999999999999999 78999999999999999999999999999884 8888887
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
++.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 764
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=109.69 Aligned_cols=83 Identities=23% Similarity=0.403 Sum_probs=79.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..+..|||.++...+|+++|.+.|..||.|+.|.+..|+.||..+|||+|+|.+..+|++||..|||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
--+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.4e-14 Score=119.41 Aligned_cols=79 Identities=32% Similarity=0.531 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+.+|+||||||+..+|+++|++.|+.||+|.+|+|.++ +|||||.|.+.+.|..||..+|+..|.|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 577899999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
-+...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 87643
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=5.2e-14 Score=117.79 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+.+.+|||+||++.+|+.+|++||+.||.|.+|.|+.+. ...+||||+|.++++|..||. |+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999984 445799999999999999996 9999999999999886
Q ss_pred cC
Q 026078 137 AD 138 (244)
Q Consensus 137 ~~ 138 (244)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=8.3e-14 Score=94.57 Aligned_cols=72 Identities=42% Similarity=0.647 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
+|||+|||..++.++|.++|..||.|..+.+..+. +.++|+|||+|.+...|..|+..+++..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998873
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=7.4e-14 Score=132.77 Aligned_cols=82 Identities=32% Similarity=0.549 Sum_probs=77.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+||++.+|+++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999998 67999999999999999999999999999999999999999
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 864
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=1e-13 Score=117.34 Aligned_cols=80 Identities=40% Similarity=0.673 Sum_probs=77.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+|+++|.++|..||.|..|.|..++.++.++|||||+|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999999753
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=4.3e-14 Score=112.57 Aligned_cols=115 Identities=26% Similarity=0.315 Sum_probs=93.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
....+|||+||+..++++.|.++|-+.|+|..|.|+.|+.|...+|||||+|.+.++|+-||+.||...|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCC
Q 026078 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPR-------NQLGPRERPMP 183 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~-------~~~~~~~~~~~ 183 (244)
...+..- ......+.|||.....+ .-+|.-..+|.
T Consensus 87 s~~~~nl------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~ 128 (203)
T KOG0131|consen 87 SAHQKNL------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPK 128 (203)
T ss_pred ccccccc------------cccccccccccCcchhHHHHHHHHHhccccccCCc
Confidence 6322111 11123567777765543 34555555443
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.7e-13 Score=92.58 Aligned_cols=71 Identities=42% Similarity=0.676 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 64 VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 64 V~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
|+|||..+++++|..+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988788999999999999999999999999999999998873
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=2.4e-13 Score=98.89 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
+..+..|||.|||+.+|.+++.++|.+||.|..|+|-..+. .+|-|||.|++..+|.+|+..|+|..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 33468899999999999999999999999999999987654 579999999999999999999999999999999998
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 39
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=117.88 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=82.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
..||...|||..|++.+|.++|.-+|+.||.|..|.|+.|..||.+..||||+|.+.+++++|.-.|+++.|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 026078 135 IAADNGR 141 (244)
Q Consensus 135 ~a~~~~~ 141 (244)
|+..-.+
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9875433
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.6e-13 Score=115.43 Aligned_cols=82 Identities=29% Similarity=0.508 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.-.|||+.|...++-++|++.|.+||.|.+++|++|..|++++||+||.|.+.++|+.||..|||.-|++|.|+..||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 026078 139 NG 140 (244)
Q Consensus 139 ~~ 140 (244)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=5.1e-13 Score=111.88 Aligned_cols=84 Identities=29% Similarity=0.491 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....+.|.|.-||.++|+++|+.+|...|.|.+|++++|+.+|.+.||+||.|.++.+|++||..|||..|....|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
|++.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9875
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=1e-12 Score=122.80 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.+++++|||+||++ .+|+++|.++|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999998863 5899999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98653
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=8.3e-13 Score=90.05 Aligned_cols=74 Identities=42% Similarity=0.704 Sum_probs=68.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
+|||+|||..+++++|.++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 6789999999999999999999999999999999874
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=1.7e-13 Score=124.81 Aligned_cols=82 Identities=29% Similarity=0.520 Sum_probs=79.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
+.|||||||+.+++++|..+|+..|.|..++++.|+.||+++||||++|.+.++|..|++.|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 026078 140 GR 141 (244)
Q Consensus 140 ~~ 141 (244)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.4e-13 Score=120.53 Aligned_cols=88 Identities=31% Similarity=0.528 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh-----CC-ceeCCe
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI-----HG-KVLNGR 129 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l-----~g-~~i~gr 129 (244)
...+.+|||.|||+++|+++|.+.|++||.|.++.|+.++.|+.++|.|||.|.+..+|..||... .| +.|.||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 344689999999999999999999999999999999999999999999999999999999999866 34 778999
Q ss_pred EEEEEEccCCCCCc
Q 026078 130 TVNASIAADNGRAS 143 (244)
Q Consensus 130 ~i~V~~a~~~~~~~ 143 (244)
.|.|.+|..+..+.
T Consensus 369 ~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 369 LLKVTLAVTRKEAA 382 (678)
T ss_pred EEeeeeccchHHHH
Confidence 99999998765444
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4.5e-13 Score=118.93 Aligned_cols=83 Identities=25% Similarity=0.504 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce-eCC--eEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNG--RTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~-i~g--r~i~ 132 (244)
.....+|||+.||..++|.||+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4456789999999999999999999999999999999999999999999999999999999999999854 665 5688
Q ss_pred EEEccC
Q 026078 133 ASIAAD 138 (244)
Q Consensus 133 V~~a~~ 138 (244)
|++|..
T Consensus 111 vk~Ad~ 116 (510)
T KOG0144|consen 111 VKYADG 116 (510)
T ss_pred ecccch
Confidence 888754
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.1e-13 Score=114.56 Aligned_cols=87 Identities=22% Similarity=0.408 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...|++|+|||-.||....+.+|.++|-.||.|.+.++..|+.|+.+++|+||.|+++.+|+.||.+|||..|+=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
++.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9987653
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.4e-12 Score=107.84 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+..|||-||.+++.|..|.++|..||.|..|+|++|..|.+.+||+||.+.+.++|..||..|||+.+.++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 43
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.2e-12 Score=119.08 Aligned_cols=84 Identities=30% Similarity=0.503 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+...|+|.||||.+...+|+.+|+.||.|..|.|+..+. |+.+|||||.|....+|..||+.||+..|+||+|-|.||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 3468999999999999999999999999999999997665 566699999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++..
T Consensus 194 V~Kd~ 198 (678)
T KOG0127|consen 194 VDKDT 198 (678)
T ss_pred ccccc
Confidence 87654
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.9e-12 Score=121.03 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh--CCceeCCeEEEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI--HGKVLNGRTVNASI 135 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l--~g~~i~gr~i~V~~ 135 (244)
+..+|||+|||+.+++++|.++|+.||.|..|.|+.+ ++||||+|.+.++|..||..| ++..|.|+.|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3579999999999999999999999999999998853 579999999999999999864 77899999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3e-13 Score=117.88 Aligned_cols=79 Identities=27% Similarity=0.519 Sum_probs=76.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
|+||||.|.+.+.|+.|+..|..||+|++|.+.+|+.|++++|||||+|+-++.|+.|++.|||..++||.|+|....+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999986543
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=5e-12 Score=112.75 Aligned_cols=76 Identities=33% Similarity=0.569 Sum_probs=71.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
..|||.||+..+|++.|+++|.+||.|..|+.++| ||||.|.+.++|.+||+.|||+.|+|..|.|.+|++.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 58999999999999999999999999999988876 9999999999999999999999999999999999986
Q ss_pred CCCc
Q 026078 140 GRAS 143 (244)
Q Consensus 140 ~~~~ 143 (244)
....
T Consensus 332 ~k~k 335 (506)
T KOG0117|consen 332 DKKK 335 (506)
T ss_pred hhhc
Confidence 5444
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=2e-12 Score=109.78 Aligned_cols=73 Identities=25% Similarity=0.510 Sum_probs=69.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
.+|||||||..+++.+|+.+|++||+|++|.|+++ |+||..++...|..||+.||+.+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999986 9999999999999999999999999999999999877
Q ss_pred C
Q 026078 140 G 140 (244)
Q Consensus 140 ~ 140 (244)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8.9e-13 Score=117.08 Aligned_cols=83 Identities=27% Similarity=0.487 Sum_probs=75.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc-eeCC--eEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK-VLNG--RTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~-~i~g--r~i~V 133 (244)
+...+|||+-|+..+||.+|+++|++||.|.+|.|+++.. +.+||||||.|.+.+.|..||+.|||. ++.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4468999999999999999999999999999999999964 899999999999999999999999995 4655 67999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
+||.+..
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 9998754
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=6e-12 Score=87.09 Aligned_cols=62 Identities=31% Similarity=0.587 Sum_probs=56.0
Q ss_pred HHHHHHHhc----cCCceEEEE-EeecCCC--CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 73 NSDLHTLFS----TFGKIARVT-VLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 73 e~~L~~~F~----~~G~i~~i~-i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
+++|.++|. .||.|..|. |+.++.+ +.++|||||.|.+.++|.+|+..|||..|.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568899998 999999995 7777766 8899999999999999999999999999999999863
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=8.3e-12 Score=82.39 Aligned_cols=56 Identities=38% Similarity=0.765 Sum_probs=50.9
Q ss_pred HHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 76 LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 76 L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
|.++|++||.|..|.+..+. +++|||+|.+.++|..|+..|||..|.|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999986
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=3.4e-12 Score=116.40 Aligned_cols=84 Identities=35% Similarity=0.585 Sum_probs=77.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
..|||+||.+++++++|..+|+.||.|..|.++.|..||.++||+||+|.+.++|.+|+..|||..|-|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCc
Q 026078 140 GRAS 143 (244)
Q Consensus 140 ~~~~ 143 (244)
....
T Consensus 359 ~~~~ 362 (549)
T KOG0147|consen 359 VDTK 362 (549)
T ss_pred cccc
Confidence 4333
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=1.3e-10 Score=103.63 Aligned_cols=84 Identities=25% Similarity=0.429 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhc-cCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...+.|||.|||+++.+++|+++|. +.|.|..|.++.|. +|+++|||.|+|.+++.+++|++.||.+.+.|++|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 57899999999996 599999999999999999999999999999999999988
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
..+..+
T Consensus 121 d~d~q~ 126 (608)
T KOG4212|consen 121 DHDEQR 126 (608)
T ss_pred cCchhh
Confidence 765433
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=5e-11 Score=111.91 Aligned_cols=76 Identities=14% Similarity=0.319 Sum_probs=63.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC------------CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTF------------GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG 123 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g 123 (244)
....++|||+|||+.+|+++|.++|..| +.|..+.+ ++.+|||||+|.+.++|..||. |||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4456899999999999999999999975 23444444 3457899999999999999995 999
Q ss_pred ceeCCeEEEEEEccC
Q 026078 124 KVLNGRTVNASIAAD 138 (244)
Q Consensus 124 ~~i~gr~i~V~~a~~ 138 (244)
..|.|+.|.|.....
T Consensus 245 ~~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 245 IIYSNVFLKIRRPHD 259 (509)
T ss_pred eEeeCceeEecCccc
Confidence 999999999976543
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.25 E-value=9.9e-12 Score=99.16 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEE-EEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+++|||+||.+.+++..|.++|+.||.|... .|+++..||.++||+||.|.+.+.+.+||..|||..+..++|+|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34889999999999999999999999998754 78899999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
..+.
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 7653
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=8.4e-11 Score=110.98 Aligned_cols=79 Identities=29% Similarity=0.503 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.+|||||+|+..+++.+|..+|+.||.|.+|.++. ++|||||.+....+|.+|+.+|..+.+.+..|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 58999999999999999999999999999998865 468999999999999999999999999999999999987
Q ss_pred CCCCc
Q 026078 139 NGRAS 143 (244)
Q Consensus 139 ~~~~~ 143 (244)
.+-..
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65444
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.22 E-value=3.8e-11 Score=98.93 Aligned_cols=82 Identities=33% Similarity=0.561 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHH----HhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHT----LFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
.++.||||.||+..+..++|+. +|++||.|..|.... |.+.+|-|||.|.+...|-.|+.+|+|..+.|.+++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999998877 999999999998876 578999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 026078 133 ASIAADNGR 141 (244)
Q Consensus 133 V~~a~~~~~ 141 (244)
|+||+.+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999987653
No 63
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.21 E-value=1.1e-10 Score=107.01 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.-+++|||.+|...+...+|+.+|++||.|+-.+|+.+..+...++|+||++.+..+|.+||..||.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7643
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=6.4e-11 Score=96.31 Aligned_cols=84 Identities=20% Similarity=0.390 Sum_probs=76.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTF-GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
......+||..||..+.+..|..+|.+| |.|..+++-+++.||.++|||||+|.+.+.|.-|.+.||++.|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445789999999999999999999998 778888888999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97654
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.18 E-value=6.9e-10 Score=100.89 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
...+|||.|||++++..+|+++|..||.|+...|..-...++..+||||+|.+...++.||.+ +-..|+++.|.|+--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346699999999999999999999999999887776543345459999999999999999995 4778899999999876
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
+..
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 543
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.5e-10 Score=106.99 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..+.|+|.|||+..+..+|+.+|..||.|..|+|+.....+.++|||||+|.++.+|..|+.+|..+-|.||.|.++||.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 36899999999999999999999999999999999875556789999999999999999999999888999999999998
Q ss_pred CCCC
Q 026078 138 DNGR 141 (244)
Q Consensus 138 ~~~~ 141 (244)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7543
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9.5e-10 Score=99.27 Aligned_cols=77 Identities=31% Similarity=0.519 Sum_probs=71.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNG 140 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~~ 140 (244)
.|||-||+..++..+|.++|+.||.|++|++..+.. | ++|| ||+|.+.+.|.+||..|||..+.+..|.|.....+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999864 4 9999 999999999999999999999999999998876654
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1e-09 Score=103.00 Aligned_cols=79 Identities=29% Similarity=0.545 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCC---CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT---RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~t---g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++|||.||++.+|.++|..+|...|.|..|.|...+.. -.+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 345999999999999999999999999999988765432 13559999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 98
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.01 E-value=3.7e-10 Score=99.12 Aligned_cols=82 Identities=26% Similarity=0.498 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||++|+|.++++.|+.+|.+||.|..|.+++|+.+++++||+||+|.+......+|.. ..+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 568999999999999999999999999999999999999999999999999999998888874 4588999999998887
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 654
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.4e-09 Score=94.69 Aligned_cols=75 Identities=25% Similarity=0.442 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHH-hCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA-IHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~-l~g~~i~gr~i~V~~a 136 (244)
.-++|||++|...+++.+|.++|.+||.|..|.++.. +++|||+|.+...|+.|... ++..+|+|.+|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3589999999999999999999999999999999774 45999999999999999865 4556689999999998
Q ss_pred cC
Q 026078 137 AD 138 (244)
Q Consensus 137 ~~ 138 (244)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 77
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-09 Score=98.55 Aligned_cols=76 Identities=28% Similarity=0.404 Sum_probs=71.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
..|||| +.+|+..|.++|+.+|+|++|+|.+|. | +.|||||.|.++.+|.+||..||...|.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 9999999999999999999999999999999999998755
Q ss_pred CC
Q 026078 140 GR 141 (244)
Q Consensus 140 ~~ 141 (244)
+.
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 43
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.99 E-value=1.9e-09 Score=91.36 Aligned_cols=84 Identities=35% Similarity=0.542 Sum_probs=76.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|+|.|||+.|++.||+++|..||.+..+.|.+++ +|.+.|.|-|.|...++|..||+.+|++.|+|+.|.|.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445899999999999999999999999999999999986 589999999999999999999999999999999999998
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76554
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.3e-09 Score=95.35 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
-.+|||..+.++++++||+.+|+.||+|+.|.+-.++.++.++||+||+|.+......||..||-..|+|..|+|-.+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999977654
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
.
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 3
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=1.7e-09 Score=96.57 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=71.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...+..|+|||.|||+++|++.|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|+|..|.|+.|.|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 4566789999999999999999999999999999998854 477877 89999999999999999999999999999
Q ss_pred EEc
Q 026078 134 SIA 136 (244)
Q Consensus 134 ~~a 136 (244)
.|.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.96 E-value=2.2e-09 Score=100.67 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCC---CCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA---TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~---tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~ 130 (244)
...|..++|||+||++.++++.|...|..||+|..|+|++-+. ....+-|+||.|-+..+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3467789999999999999999999999999999999997642 2456779999999999999999999999999999
Q ss_pred EEEEEccCC
Q 026078 131 VNASIAADN 139 (244)
Q Consensus 131 i~V~~a~~~ 139 (244)
|++-|++.-
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999998643
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=4e-09 Score=89.28 Aligned_cols=83 Identities=25% Similarity=0.468 Sum_probs=77.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
......|||+|+.+.+|.++|...|..||.|..+.|++++.++.++||+||+|.+.+.+..++. ||+..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4456899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7665
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=2.6e-09 Score=93.77 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=76.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
..+|||++||..+++.+|+++|.+||.|..+.++.|..+.+++||+||.|.+.+.+.+++. ..-+.|+++.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4599999999999999999999999999999999999999999999999999999999987 677999999999999998
Q ss_pred CCC
Q 026078 139 NGR 141 (244)
Q Consensus 139 ~~~ 141 (244)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 753
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.93 E-value=1.8e-08 Score=83.19 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeec-CCCCCcccEEEEEeCChhHHHHHHHHhCCceeC---CeEEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD-RATRKSRGVAFIQFVQIPDALSAARAIHGKVLN---GRTVNAS 134 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d-~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~---gr~i~V~ 134 (244)
-+||||.+||.++...+|..+|..|-....+.|... +.....+.+|||+|.+...|.+|+.+|||+.|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999876666555443 211234579999999999999999999999995 7889999
Q ss_pred EccCCCCCc
Q 026078 135 IAADNGRAS 143 (244)
Q Consensus 135 ~a~~~~~~~ 143 (244)
+|+.+++..
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 999876655
No 79
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.7e-09 Score=90.02 Aligned_cols=81 Identities=28% Similarity=0.538 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce-eCC--eEEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNG--RTVNAS 134 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~-i~g--r~i~V~ 134 (244)
..++||||-|...-.|+|++.+|..||.|.+|.++.... |.++|||||.|.+..+|..||..|||.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 568999999999999999999999999999999998764 8899999999999999999999999954 555 569999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
|+...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98754
No 80
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.91 E-value=8.3e-09 Score=90.36 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=79.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceE--------EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
.....+|||.+||..+++.+|.++|.++|.|. .|.|.++++|+.++|-|.|.|.++..|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999999885 5788899999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 026078 128 GRTVNASIAADNGR 141 (244)
Q Consensus 128 gr~i~V~~a~~~~~ 141 (244)
+..|+|.+|..++.
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987654
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.90 E-value=1.3e-08 Score=88.68 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceE--------EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
+..++.|||.|||.++|.+++.++|++||.|. .|+|..+.. |..+|=|++.|...+++..||..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567899999999999999999999999886 478888765 999999999999999999999999999999
Q ss_pred CeEEEEEEccCC
Q 026078 128 GRTVNASIAADN 139 (244)
Q Consensus 128 gr~i~V~~a~~~ 139 (244)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999998754
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=2.9e-09 Score=88.46 Aligned_cols=72 Identities=28% Similarity=0.498 Sum_probs=66.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
..|||++||+.+.+.+|+.||..||.|..|.|.. ||+||+|.+..+|..||..||+.+|.|..+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998854 59999999999999999999999999998999998754
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.9e-09 Score=87.48 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
++...||||+||...|+++.|.++|-+.|+|..|.|..++. +..+ ||||.|.+.....-|+..|||..+.++.|.|++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 44568999999999999999999999999999999998875 5555 999999999999999999999999999999888
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
..-
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 543
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=1.2e-07 Score=69.48 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=69.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccC--CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC----CeEEEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTF--GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN----GRTVNA 133 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~--G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~----gr~i~V 133 (244)
|||.|.|||...|.++|.+++... |..--+.++.|..++-+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999998888653 56667888999888999999999999999999999999998874 466888
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=3.4e-08 Score=82.84 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
...+||.|.|...++.+.|...|.+|-.....++++++.||+++||+||.|.+..++..|+..|+|..++.++|++.-+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 45799999999999999999999999998999999999999999999999999999999999999999999999887654
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
.+
T Consensus 269 wk 270 (290)
T KOG0226|consen 269 WK 270 (290)
T ss_pred HH
Confidence 43
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.54 E-value=5.4e-07 Score=81.94 Aligned_cols=109 Identities=16% Similarity=0.243 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.-.|-+.+|||.+|+++|.+||+.++ |..+.+.+ .+|+..|-|||+|.+.++++.|++ .+...+..+.|.|--+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 34566789999999999999999995 66655544 579999999999999999999999 687888999999987755
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 026078 139 NGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRN 173 (244)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~ 173 (244)
..-.. .-++.+...+.......-..|++.|...
T Consensus 86 ~e~d~--~~~~~g~~s~~~d~vVRLRGLPfscte~ 118 (510)
T KOG4211|consen 86 AEADW--VMRPGGPNSSANDGVVRLRGLPFSCTEE 118 (510)
T ss_pred ccccc--cccCCCCCCCCCCceEEecCCCccCcHH
Confidence 43322 2222222222223334446788888753
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=9.1e-08 Score=87.99 Aligned_cols=72 Identities=25% Similarity=0.519 Sum_probs=64.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
..+..+|+|-|||..|++++|..+|+.||.|..|+.. ...+|..||+|.+..+|+.|+++|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3446799999999999999999999999999997663 44678999999999999999999999999998887
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.8e-07 Score=86.45 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=79.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.....+.|||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+.+..|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
.|...
T Consensus 365 ~A~~g 369 (500)
T KOG0120|consen 365 RAIVG 369 (500)
T ss_pred hhhcc
Confidence 98654
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.45 E-value=2.1e-06 Score=76.52 Aligned_cols=75 Identities=28% Similarity=0.450 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 59 KSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 59 ~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
++.|.|.||... +|.+.|..+|+.||.|..|+|+.++. --|+|+|.+...|+-|+..|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999754 79999999999999999999999753 379999999999999999999999999999999986
Q ss_pred C
Q 026078 138 D 138 (244)
Q Consensus 138 ~ 138 (244)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=2.9e-07 Score=76.12 Aligned_cols=69 Identities=26% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
.....+.||||.||..++||++|+.+|+.|-....++|... ..-++|||+|.+.+.|..||..|+|..|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34455789999999999999999999999987776666432 2346999999999999999999998776
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.38 E-value=1.5e-07 Score=86.37 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
+....+||+-.|+..++..+|.+||+.+|.|..|.|+.|+.++.++|.|||+|.+.+.+..||. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3445899999999999999999999999999999999999999999999999999999999996 999999999999988
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 54
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.34 E-value=2.8e-06 Score=59.97 Aligned_cols=68 Identities=31% Similarity=0.403 Sum_probs=48.3
Q ss_pred CEEEEeCCCCCCCHHH----HHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 60 STVYVSNLDYALTNSD----LHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~----L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
+.|||.|||.+..... |.+++..|| .|..| ..+.|+|.|.+.+.|.+|.+.|+|-.+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999988765 567777886 55554 12589999999999999999999999999999999
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.31 E-value=5.9e-07 Score=78.50 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=74.3
Q ss_pred CEEE-EeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 60 STVY-VSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 60 ~~lf-V~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++| |++|++.+++++|+.+|..+|.|..+++..+..++..+|||||.|.....+..++.. +...+.+++|.|....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4455 999999999999999999999999999999999999999999999999999999886 78889999999999876
Q ss_pred CCCC
Q 026078 139 NGRA 142 (244)
Q Consensus 139 ~~~~ 142 (244)
.+..
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 5443
No 94
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.30 E-value=1.8e-06 Score=75.66 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCC--ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...+|||||-|++|++||.+.+...| .|..++++.++.+|.++|||+|...+....++.++.|...+|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 46899999999999999999988777 5778899999999999999999999999999999999989998876444
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.08 E-value=8.6e-06 Score=60.74 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=44.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC-----ceeCCeEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG-----KVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g-----~~i~gr~i~V 133 (244)
++.|+|.+++..++.++|+++|+.||.|..|.+...- -.|||.|.+.+.|+.|+..+.- ..|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3679999999999999999999999999999886542 3799999999999999986643 3556666666
Q ss_pred EE
Q 026078 134 SI 135 (244)
Q Consensus 134 ~~ 135 (244)
.+
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 55
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=3.2e-06 Score=70.44 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=63.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....+.|+|.+|+..+.+.+|.++|.++|.+....+ ..+++||+|.+.++|..||..|++..|.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455789999999999999999999999999855444 235999999999999999999999999999999943
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.04 E-value=2.2e-05 Score=65.13 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=70.2
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeEE
Q 026078 53 GGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTV 131 (244)
Q Consensus 53 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~i 131 (244)
....+++..||+.|||..++.+.|..+|.+|.....|+++... .+.|||+|.+...|..|...|++..|- ...+
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 3446788999999999999999999999999999999887653 479999999999999999999998885 7888
Q ss_pred EEEEcc
Q 026078 132 NASIAA 137 (244)
Q Consensus 132 ~V~~a~ 137 (244)
.|.++.
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 888874
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.04 E-value=1.3e-05 Score=73.09 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEE-EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
....|-+.+||+.||++||.+||+..-.|.. |.++.++ .+++.|-|||+|.+.+.|+.||. -|...|.-+.|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 3467889999999999999999998765555 5555655 47799999999999999999998 5668888898888664
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=2.8e-05 Score=68.00 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=65.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHH----H--HHHhccCCceEEEEEeecCCC-CCcccE--EEEEeCChhHHHHHHHHhCCc
Q 026078 54 GLAPSKSTVYVSNLDYALTNSD----L--HTLFSTFGKIARVTVLKDRAT-RKSRGV--AFIQFVQIPDALSAARAIHGK 124 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~----L--~~~F~~~G~i~~i~i~~d~~t-g~~rg~--aFV~f~~~~~A~~Ai~~l~g~ 124 (244)
........|||-+|++.+..++ | .++|.+||.|..|.|.+...+ .-..+. .||+|.+.++|..||.+.+|.
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 3345567899999999986665 2 589999999998877654211 111222 399999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 026078 125 VLNGRTVNASIAA 137 (244)
Q Consensus 125 ~i~gr~i~V~~a~ 137 (244)
.++|+.|+..|-.
T Consensus 189 ~~DGr~lkatYGT 201 (480)
T COG5175 189 LLDGRVLKATYGT 201 (480)
T ss_pred cccCceEeeecCc
Confidence 9999999998854
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=5e-05 Score=70.44 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCCCCH------HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeE
Q 026078 58 SKSTVYVSNLDYALTN------SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRT 130 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te------~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~ 130 (244)
-.+.|+|.|+|---.. .-|..+|+++|+|..+.++.+..+| .+||.|++|.+..+|+.|++.|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3578999999865332 2367899999999999999887755 9999999999999999999999999985 677
Q ss_pred EEEEEcc
Q 026078 131 VNASIAA 137 (244)
Q Consensus 131 i~V~~a~ 137 (244)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776644
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.81 E-value=0.00014 Score=64.47 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 54 GLAPSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
....+++.+.|.+|... +..+-|..+|..||.|..|++++.+ .|-|.|++.+..+.++||..||+..+.|..|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567899999999876 4677899999999999999999865 36899999999999999999999999999999
Q ss_pred EEEccCC
Q 026078 133 ASIAADN 139 (244)
Q Consensus 133 V~~a~~~ 139 (244)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998754
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.68 E-value=0.00025 Score=67.41 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=65.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceE-EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIA-RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+.|-|.|+|+.++-+||.+||..|-.+- +|.+.++ ..|+..|-|.|.|++.++|.+|...|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788899999999999999999997665 4444443 4589999999999999999999999999999999998865
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.001 Score=53.94 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee--CCeEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--NGRTVNAS 134 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i--~gr~i~V~ 134 (244)
.....|.|.+||...++++|++++...|.|....+.+| |++.|+|...++++-||..|+...+ .|....|.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 34578999999999999999999999999999999877 4899999999999999999988766 46555555
Q ss_pred EccC
Q 026078 135 IAAD 138 (244)
Q Consensus 135 ~a~~ 138 (244)
+-..
T Consensus 186 v~~~ 189 (241)
T KOG0105|consen 186 VRGD 189 (241)
T ss_pred eccc
Confidence 5433
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.62 E-value=0.0002 Score=64.23 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe-EEE
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TVN 132 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr-~i~ 132 (244)
...|+..+|.+.|||..+++++|+.+|...|......... ++.+-+|++.+.+.++|..|+..+|.+.+... .|+
T Consensus 409 ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlR 484 (492)
T KOG1190|consen 409 NIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLR 484 (492)
T ss_pred ccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEE
Confidence 3467889999999999999999999999998765554433 33456999999999999999999999998754 899
Q ss_pred EEEccC
Q 026078 133 ASIAAD 138 (244)
Q Consensus 133 V~~a~~ 138 (244)
|.|++.
T Consensus 485 vSFSks 490 (492)
T KOG1190|consen 485 VSFSKS 490 (492)
T ss_pred EEeecc
Confidence 999864
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.57 E-value=4.3e-05 Score=64.52 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=60.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCC--------CCccc----EEEEEeCChhHHHHHHHHhCCceeC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT--------RKSRG----VAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~t--------g~~rg----~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
-.||+++||+.+...-|+++|+.||.|-.|.|.....+ |..+. -++|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999988765444 22222 3789999999999999999999998
Q ss_pred CeE
Q 026078 128 GRT 130 (244)
Q Consensus 128 gr~ 130 (244)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 106
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.50 E-value=0.00045 Score=64.58 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=62.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhcc-CCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee---CCeE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFST-FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGRT 130 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i---~gr~ 130 (244)
..+..+.|||.||-.-.|.-+|+.++.. +|.|....| | +.+..|||.|.+.++|...+.+|||+.+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999995 556666533 2 2456899999999999999999999886 5677
Q ss_pred EEEEEcc
Q 026078 131 VNASIAA 137 (244)
Q Consensus 131 i~V~~a~ 137 (244)
|.|.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888864
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.49 E-value=0.00077 Score=52.76 Aligned_cols=75 Identities=25% Similarity=0.423 Sum_probs=53.6
Q ss_pred CCCCCCEEEEeCCCC------CCCH---HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 55 LAPSKSTVYVSNLDY------ALTN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~------~~te---~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
..|+..||.|.=+.+ ...+ .+|.+.|..||.+.-|+++-+ .-+|+|.+-..|.+|+. |+|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 356677888875551 1222 257788999999888888654 57999999999999999 99999
Q ss_pred eCCeEEEEEEccC
Q 026078 126 LNGRTVNASIAAD 138 (244)
Q Consensus 126 i~gr~i~V~~a~~ 138 (244)
|+|+.|+|++..+
T Consensus 94 v~g~~l~i~LKtp 106 (146)
T PF08952_consen 94 VNGRTLKIRLKTP 106 (146)
T ss_dssp ETTEEEEEEE---
T ss_pred ECCEEEEEEeCCc
Confidence 9999999999654
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.46 E-value=0.00034 Score=45.50 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=42.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHH
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai 118 (244)
+.|-|.+.+....+. +..+|..||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 567889999877655 555899999999988862 2348999999999999985
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.40 E-value=0.011 Score=52.71 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCCCEEEEeCC--CCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC--CeEE
Q 026078 56 APSKSTVYVSNL--DYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN--GRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nL--p~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~--gr~i 131 (244)
..++..|.+.=| -+-+|.+-|..+....|+|..|.|++. +| --|.|+|++.+.|++|..+|||..|- -..|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 334555655544 456799999999999999999998874 34 36999999999999999999998763 3679
Q ss_pred EEEEccCC
Q 026078 132 NASIAADN 139 (244)
Q Consensus 132 ~V~~a~~~ 139 (244)
+|+||++.
T Consensus 192 KIeyAkP~ 199 (494)
T KOG1456|consen 192 KIEYAKPT 199 (494)
T ss_pred EEEecCcc
Confidence 99999874
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00043 Score=63.76 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=59.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhc-cCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHH
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 120 (244)
-.+..|||||+||.-++..+|..+|. -||.|..+.|-.|++-+.++|-|=|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34568999999999999999999999 799999999999977788999999999999999999984
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.36 E-value=0.00075 Score=59.39 Aligned_cols=78 Identities=27% Similarity=0.413 Sum_probs=61.8
Q ss_pred CCCCCEEEEeCCCC----CCC-------HHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc
Q 026078 56 APSKSTVYVSNLDY----ALT-------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (244)
Q Consensus 56 ~~~~~~lfV~nLp~----~~t-------e~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~ 124 (244)
....++|.|.||=. ..+ .++|.+-..+||.|..|.|.- ..+.|.+-|.|.+.++|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34458898988843 223 234556678999999987753 347789999999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 026078 125 VLNGRTVNASIAA 137 (244)
Q Consensus 125 ~i~gr~i~V~~a~ 137 (244)
.|+||.|...+..
T Consensus 338 ~fdgRql~A~i~D 350 (382)
T KOG1548|consen 338 WFDGRQLTASIWD 350 (382)
T ss_pred eecceEEEEEEeC
Confidence 9999999998864
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.0013 Score=48.48 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEE-EeecC------CCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE-
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVT-VLKDR------ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT- 130 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~-i~~d~------~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~- 130 (244)
.+.|.|-+.|...+ ..|...|++||.|+... +..+. ..........|.|.++.+|.+||. .||.+|.|..
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 46688999999854 56788999999998764 10000 001123589999999999999999 7999998854
Q ss_pred EEEEEcc
Q 026078 131 VNASIAA 137 (244)
Q Consensus 131 i~V~~a~ 137 (244)
|-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.35 E-value=0.00054 Score=66.80 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC--eEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVN 132 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~ 132 (244)
.....+.+||++|..++....|...|..||.|..|.+-. ...||+|.|.+...|+.|+..|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 456678999999999999999999999999999987743 23599999999999999999999999976 6699
Q ss_pred EEEccCCCC
Q 026078 133 ASIAADNGR 141 (244)
Q Consensus 133 V~~a~~~~~ 141 (244)
|.|+.+...
T Consensus 525 vdla~~~~~ 533 (975)
T KOG0112|consen 525 VDLASPPGA 533 (975)
T ss_pred cccccCCCC
Confidence 999886543
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.00088 Score=62.37 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=51.1
Q ss_pred HHHHhccCCceEEEEEeecCCC---CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 76 LHTLFSTFGKIARVTVLKDRAT---RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 76 L~~~F~~~G~i~~i~i~~d~~t---g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
++.-+++||.|..|.|...... ....|..||+|.+.+++++|+.+|+|..|.++.|...|-
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 4445678999999999876222 345678899999999999999999999999999998885
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.22 E-value=0.00047 Score=61.45 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCc-eE--EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGK-IA--RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~--~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...|-+.+||+..+.++|..||..|-. |. -|.|+.+. .|++.|-|||+|.+.+.|..|....+.+....+.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567889999999999999999998864 33 37777765 388999999999999999999999998888899998876
Q ss_pred c
Q 026078 136 A 136 (244)
Q Consensus 136 a 136 (244)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 5
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.14 E-value=0.00069 Score=60.52 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=61.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCC---CCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA---TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~---tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.|.|.||.+.+|.++|+.+|...|.|..+.|+.+.. .....-.|||-|.+...+..|.. |.+++|-++.|.|-...
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 799999999999999999999999999998876321 12345589999999988888866 77788777777666544
Q ss_pred C
Q 026078 138 D 138 (244)
Q Consensus 138 ~ 138 (244)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00036 Score=62.93 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=56.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeec---CCC--CC--------cccEEEEEeCChhHHHHHHHHhC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD---RAT--RK--------SRGVAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d---~~t--g~--------~rg~aFV~f~~~~~A~~Ai~~l~ 122 (244)
..+..+|.+-|||.+-.-+-|.++|+.+|.|..|+|+.- +.+ +. .+-+|||+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999888999999999999999999865 222 11 24579999999999999999775
Q ss_pred C
Q 026078 123 G 123 (244)
Q Consensus 123 g 123 (244)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=0.00052 Score=66.55 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
...|||.|+|+..|.+.|+.++..+|.++.+.++..+ .|+++|.|||.|.+..++..++..++...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999887766 499999999999999999999998888888888888888765
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0032 Score=58.13 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=49.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCC--C-CCccc---EEEEEeCChhHHHHHHHHhC
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA--T-RKSRG---VAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~--t-g~~rg---~aFV~f~~~~~A~~Ai~~l~ 122 (244)
.-.+.||||+||+.++|+.|...|..||.+. |.+..... . -.++| |+|+.|.+...+...|.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3458999999999999999999999999864 44432111 1 13566 99999999988888877654
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=7.4e-05 Score=72.22 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
-+++||.||+..+.+.+|...|..+|.|..+.|.....+++.+|+|||+|..++.+.+||.....+.+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 468999999999999999999999999888777655667899999999999999999999865544444
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.63 E-value=0.0067 Score=52.48 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=50.9
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCc-ccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 74 SDLHTLFSTFGKIARVTVLKDRATRKS-RGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 74 ~~L~~~F~~~G~i~~i~i~~d~~tg~~-rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+++.+...+||.|..|.|+..+.--.. .--.||+|...+.|.+|+-.|||..|+|+.+...|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 345667789999999988876432222 2247999999999999999999999999999888753
No 122
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.56 E-value=0.018 Score=40.82 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~ 122 (244)
..+..||+ +|......||.++|+.||.|. |.++.| .-|||.....+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 34667777 999999999999999999975 555554 279999999999999998775
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.002 Score=57.57 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=54.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCC----ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFG----KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G----~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.|-+.+||+++|+.++.+||...- ....|.++.. ..|+..|-|||.|...++|+.||. -|...|+-|.|.+-.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 455579999999999999997432 3334544443 358899999999999999999998 465666667665533
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.49 E-value=0.0026 Score=57.47 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=58.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce-eCCeEEEEEEccC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNGRTVNASIAAD 138 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~-i~gr~i~V~~a~~ 138 (244)
..+|++||.+.++..+|..+|...-.-..-.++. -.||+||.+.+...|.+|++.++|.. +.|..+.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997652111112222 23799999999999999999999965 8899999988765
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.48 E-value=0.0011 Score=58.33 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=64.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHH-H--HHhccCCceEEEEEeecCC--CC-CcccEEEEEeCChhHHHHHHHHhCCceeCCe
Q 026078 56 APSKSTVYVSNLDYALTNSDL-H--TLFSTFGKIARVTVLKDRA--TR-KSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L-~--~~F~~~G~i~~i~i~~d~~--tg-~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr 129 (244)
......+||-+|+..+..+.+ + .+|.+||.|..|.+..+.. .+ ..-.-++|+|...++|..||...+|..+.|+
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 345578999999988755444 3 6799999999998887652 11 1223389999999999999999999999999
Q ss_pred EEEEEEccC
Q 026078 130 TVNASIAAD 138 (244)
Q Consensus 130 ~i~V~~a~~ 138 (244)
.|++.+...
T Consensus 154 ~lka~~gtt 162 (327)
T KOG2068|consen 154 ALKASLGTT 162 (327)
T ss_pred hhHHhhCCC
Confidence 988777654
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.43 E-value=0.0014 Score=55.50 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=50.4
Q ss_pred HHHHHhc-cCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 75 DLHTLFS-TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 75 ~L~~~F~-~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+|...|. +||.|..+.|..+. .-...|-+||.|...++|++|+..||+..|.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444445 89999988665542 23467889999999999999999999999999999999864
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.30 E-value=0.014 Score=47.51 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhcc-CCce---EEEEEeecCCC--CCcccEEEEEeCChhHHHHHHHHhCCceeC---C
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFST-FGKI---ARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVLN---G 128 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~i~i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~---g 128 (244)
....|.|.+||+.+|++++.+.+.. ++.. ..+.-.....+ .....-|||.|.+.+++...+..++|+.|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4579999999999999998887766 5554 33332222111 123356999999999999999999998873 2
Q ss_pred --eEEEEEEccC
Q 026078 129 --RTVNASIAAD 138 (244)
Q Consensus 129 --r~i~V~~a~~ 138 (244)
....|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456777643
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.29 E-value=0.025 Score=37.91 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccC---CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTF---GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 121 (244)
...|+|.++.. ++.++|+.+|..| .....|.++-|. -|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 36799999854 6778899999998 234578888874 5889999999999999865
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.27 E-value=0.0047 Score=59.04 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=66.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEE-EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
-.-+-.|||-.||..+++.++.++|...-.|.. |.|..- -+++.++.|||.|....++..|+..-+.+.++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344678999999999999999999998877776 555544 467888999999999999999988777777888889997
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
-..
T Consensus 510 si~ 512 (944)
T KOG4307|consen 510 SIA 512 (944)
T ss_pred chh
Confidence 643
No 130
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.16 E-value=0.003 Score=57.79 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=62.7
Q ss_pred CCCCEEEEeCCCCCC-CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYAL-TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...+.|-+.-.|+.+ |-.+|...|.+||.|..|.|-+.. --|.|+|.+..+|-.|.. .++..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 345666676777766 668899999999999999886542 368999999999988877 789999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
-++.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8764
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.13 E-value=0.028 Score=38.94 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=41.7
Q ss_pred EEEEe-CCCCCCCHHHHHHHhccCCc-----eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 61 TVYVS-NLDYALTNSDLHTLFSTFGK-----IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 61 ~lfV~-nLp~~~te~~L~~~F~~~G~-----i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
++||. +--..++..+|..+|...+. |-.|.|..+ |+||+... +.|..++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 46663 44456788999999987754 457777654 99999875 58899999999999999999998
Q ss_pred Ec
Q 026078 135 IA 136 (244)
Q Consensus 135 ~a 136 (244)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.10 E-value=0.029 Score=43.73 Aligned_cols=76 Identities=28% Similarity=0.319 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEeCCCCCCC-HHH---HHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe
Q 026078 54 GLAPSKSTVYVSNLDYALT-NSD---LHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR 129 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~t-e~~---L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr 129 (244)
...|+-.||.|.=|..++. .+| +...++.||+|.+|.+. | +--|.|.|.+..+|-.|+.+++. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 4467778999987776663 233 55667899999998773 2 33799999999999999999875 66788
Q ss_pred EEEEEEcc
Q 026078 130 TVNASIAA 137 (244)
Q Consensus 130 ~i~V~~a~ 137 (244)
.+.+.|..
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88888853
No 133
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.92 E-value=0.011 Score=56.20 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 46 HKKSKGSGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 46 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
..+......+.++..+|||+||...+...-+..++..||.|..+.... |+|..|..+.....|+..++-..
T Consensus 27 ~~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~ 97 (668)
T KOG2253|consen 27 VVPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELN 97 (668)
T ss_pred ccCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccC
Confidence 334444555667789999999999999999999999999988776543 99999999999999999998888
Q ss_pred eCCeEEEEEE
Q 026078 126 LNGRTVNASI 135 (244)
Q Consensus 126 i~gr~i~V~~ 135 (244)
++|..|.+..
T Consensus 98 ~~~~kl~~~~ 107 (668)
T KOG2253|consen 98 IDDQKLIENV 107 (668)
T ss_pred CCcchhhccc
Confidence 8888876655
No 134
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.80 E-value=0.012 Score=50.00 Aligned_cols=75 Identities=29% Similarity=0.402 Sum_probs=60.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc----eeCCeEEEEEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGRTVNASI 135 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~----~i~gr~i~V~~ 135 (244)
..|||.||+..+..+.|...|..||+|....+..|- -++..+-++|.|...-.|..|+..+.-. ++.+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 789999999999999999999999999876666653 3778888999999999999999877432 33455555544
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.77 E-value=0.15 Score=38.22 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g 128 (244)
..+.+...|+.++-++|..+.+.+- .|..++|+++. ..++-.++|.|.+...|......+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566666677776666654 46788998873 3356678999999999999999999998754
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.74 E-value=0.0022 Score=62.75 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=64.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.+||++||...+++.+|...|..+|.|..|.|-..+. +..--|+||.|.+...+..|+..+.+..|..-.+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357999999999999999999999999999998866532 333459999999999999999999888876555555554
No 137
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.92 E-value=0.036 Score=54.23 Aligned_cols=75 Identities=29% Similarity=0.406 Sum_probs=64.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee--CCeEEEEEEc
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--NGRTVNASIA 136 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i--~gr~i~V~~a 136 (244)
..+.++.|.+-..+-..|..+|..||.|..++.+++- ..|.|+|...+.|..|+.+|+|..+ -|.+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3466677777788888899999999999999988764 3899999999999999999999875 6888999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 754
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.66 E-value=0.06 Score=47.21 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..+++||+++.+.+.+.++..+|..+|.+....+........++|+++|.|...+.+..|+.....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 36899999999999999899999999988877776666677899999999999999999999544456777766666554
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 139
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.49 E-value=0.93 Score=44.21 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=53.9
Q ss_pred CEEEEe-CCCCCCCHHHHHHHhccCCceE-----EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 60 STVYVS-NLDYALTNSDLHTLFSTFGKIA-----RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 60 ~~lfV~-nLp~~~te~~L~~~F~~~G~i~-----~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.++||. +-...++..+|..++..-+.|. .|.|..+ |.||+... ..|...+..|++..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 456663 4456788889998888766553 5666543 89999874 5688899999999999999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
+.+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 998543
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.18 E-value=0.21 Score=40.90 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=45.4
Q ss_pred CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC--CceeCCeEEEEEEccC
Q 026078 72 TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTVNASIAAD 138 (244)
Q Consensus 72 te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~--g~~i~gr~i~V~~a~~ 138 (244)
....|+.+|..|+.+..+.++.. -+-..|.|.+.+.|..|...|+ +..+.|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34779999999999988877653 2358999999999999999999 9999999999999854
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=0.22 Score=43.51 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE-EEEEEccC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT-VNASIAAD 138 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~-i~V~~a~~ 138 (244)
.=|-|-++|+.-+ ..|..+|++||.|+...... .-.+-+|.|.+.-+|++||. .||.+|+|.. |-|....+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 3444556776543 45778999999998765532 22489999999999999999 7999998865 55665444
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 3
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=0.12 Score=48.47 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhcc----------------------------CCceEEEEEeecCCCCCcccEEEEEeCC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFST----------------------------FGKIARVTVLKDRATRKSRGVAFIQFVQ 110 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~----------------------------~G~i~~i~i~~d~~tg~~rg~aFV~f~~ 110 (244)
-+++-|.||+...+..+|..++.. .|.-.-+.++.|-.+....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 467778888877777777766642 2333346677777777889999999999
Q ss_pred hhHHHHHHHHhCCcee---C-CeEEEEEEccCC
Q 026078 111 IPDALSAARAIHGKVL---N-GRTVNASIAADN 139 (244)
Q Consensus 111 ~~~A~~Ai~~l~g~~i---~-gr~i~V~~a~~~ 139 (244)
++++..+.+++||+.. . ...+.|.||+-.
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 9999999999999764 3 345677777543
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.34 E-value=0.32 Score=44.68 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=58.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG 128 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g 128 (244)
+++.|+|-.+|..+|-.||..|...|- .|..|+|++|.. ..+=..+|.|.+..+|......+||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999988664 588999999632 233467999999999999999999998754
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.74 E-value=0.32 Score=45.77 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=53.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhcc--CCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC--ceeCCeEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFST--FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVN 132 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g--~~i~gr~i~ 132 (244)
..-|.|+|.-||..+..++++.+|.. |-++.+|.+-.+- -=||+|.+..+|+.|.+.|.. ++|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34578888999999999999999975 6778888876652 359999999999999876643 345565554
Q ss_pred E
Q 026078 133 A 133 (244)
Q Consensus 133 V 133 (244)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.34 E-value=2.3 Score=28.81 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=42.7
Q ss_pred CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 70 ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 70 ~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.++-.+|+..|..|+- ..|..++ | | =||.|.+..+|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4577899999999964 3344443 2 2 489999999999999999999888777654
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=1.5 Score=41.66 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=60.2
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHhccC----CceEEEEEeecC----------CCCC---------------------
Q 026078 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTF----GKIARVTVLKDR----------ATRK--------------------- 99 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~i~i~~d~----------~tg~--------------------- 99 (244)
....++|-|-||.|. +...+|..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 344678999999997 5888999998876 578888765321 1111
Q ss_pred ----------------cccEEEEEeCChhHHHHHHHHhCCceeC--CeEEEEEEc
Q 026078 100 ----------------SRGVAFIQFVQIPDALSAARAIHGKVLN--GRTVNASIA 136 (244)
Q Consensus 100 ----------------~rg~aFV~f~~~~~A~~Ai~~l~g~~i~--gr~i~V~~a 136 (244)
..=||.|+|.+...|......++|..|. +..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1127999999999999999999999986 455666664
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=87.51 E-value=2.3 Score=37.10 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhccCCce-EEEEEeecCCCCCcccEEEEEeCCh
Q 026078 52 SGGLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKI-ARVTVLKDRATRKSRGVAFIQFVQI 111 (244)
Q Consensus 52 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~i~i~~d~~tg~~rg~aFV~f~~~ 111 (244)
++...+-.+-|||+||+.++.-.||+..+.+.+-+ .+|.+ ..+.|-||+.|.+.
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 33444556789999999999999999999887643 23333 23567899999874
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.52 E-value=0.15 Score=45.91 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=56.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+|+|++|+..+...++.++|..+|.|....+-. +...-+|-|+|........|+. ++|..+.-+...+.+-.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 6899999999999999999999999998776644 3334577799998888888888 67777664444433333
No 149
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=73.85 E-value=2.6 Score=20.81 Aligned_cols=16 Identities=44% Similarity=1.601 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 026078 156 RCYECGDEGHLSYECP 171 (244)
Q Consensus 156 ~~~~~g~~g~~~~~~~ 171 (244)
.|+.|+..||+..+||
T Consensus 2 ~C~~C~~~GH~~~~Cp 17 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCP 17 (18)
T ss_dssp BCTTTSCSSSCGCTSS
T ss_pred cCcCCCCcCcccccCc
Confidence 4899999999999986
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=8 Score=35.34 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=46.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCc-eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHH
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 120 (244)
.+.|=|.++|.....+||..+|+.|+. -..|.++-|. .||..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 478999999999988899999999974 3567777664 799999999999999873
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=71.09 E-value=0.15 Score=46.49 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=63.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEE-eecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTV-LKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i-~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+.+-|.|+|+...++-|..++..||.+..|.. ..+..| -..-|+|...+.+..||..|+|..|....+.|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 467899999999999999999999999988854 334332 244578889999999999999999999999998864
Q ss_pred C
Q 026078 138 D 138 (244)
Q Consensus 138 ~ 138 (244)
+
T Consensus 156 d 156 (584)
T KOG2193|consen 156 D 156 (584)
T ss_pred h
Confidence 4
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=69.85 E-value=5.8 Score=32.66 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHH
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAA 118 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai 118 (244)
.......+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 3556789999999999999999999999999977777665433334444444444333333333
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.34 E-value=11 Score=28.42 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=32.0
Q ss_pred EEEEeCCCCCC---------CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeC-ChhHHHHHHH
Q 026078 61 TVYVSNLDYAL---------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV-QIPDALSAAR 119 (244)
Q Consensus 61 ~lfV~nLp~~~---------te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~-~~~~A~~Ai~ 119 (244)
++.|.|++... +...|.+.|..|.++. +..+.++ ..+.|+++|.|. +..--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 56677886533 4578999999998875 5566654 357899999997 5555555655
No 154
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=65.95 E-value=2.8 Score=23.49 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=10.4
Q ss_pred hcccCCCCCCcccC
Q 026078 231 KRVSYFSDESDEEE 244 (244)
Q Consensus 231 ~~~~~~~~~~~~~~ 244 (244)
+..+++|||+|+.+
T Consensus 9 rl~SlySDeeeE~~ 22 (30)
T PF03522_consen 9 RLESLYSDEEEETE 22 (30)
T ss_pred eeeccccCcccccc
Confidence 45678999998753
No 155
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.79 E-value=15 Score=25.11 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=43.5
Q ss_pred HHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 74 SDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 74 ~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+|.+.|..+| .+..|..+..+.++.+...-||+.....+... .|+=..|+++.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777788888 57788888877777777788888875533333 344567789988888754
No 156
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=62.73 E-value=1.6 Score=36.69 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCCEEEEeC----CCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 58 SKSTVYVSN----LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 58 ~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
...+++.|+ |...++++.+..+|+.-|.|..+++..+.. ++++.+.||.+.-....-.++...++..+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 346777888 777889999999999999999999988765 78889999999888888888876665543
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=62.48 E-value=1.3 Score=41.87 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=54.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
...|+|||.|++++++-.+|..++..+-.+..+.+.....-....-+.+|.|.---...-|+.+||++.+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 44689999999999999999999998877766655443222345567899998777778888888887653
No 158
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.88 E-value=8.7 Score=31.33 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=52.5
Q ss_pred CEEEEeCCCCCC-CHH----HHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe-EEEE
Q 026078 60 STVYVSNLDYAL-TNS----DLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TVNA 133 (244)
Q Consensus 60 ~~lfV~nLp~~~-te~----~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr-~i~V 133 (244)
+++++.+|+..+ +.. ....+|.+|-......+++ +.++.-|.|.++..|..|...++...|.|. .|..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 567788888765 222 2345566655544444433 334667899999999999999999999888 8888
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887643
No 159
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.53 E-value=20 Score=24.26 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=43.1
Q ss_pred HHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 74 SDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 74 ~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
++|.+.|...| .|..|.-+..+.+..+...-||++....+... .++=..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 45677777777 57777777776667777788998876544333 3444677888888887643
No 160
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.21 E-value=2.7 Score=36.56 Aligned_cols=67 Identities=24% Similarity=0.405 Sum_probs=41.1
Q ss_pred CCEEEEeCCCCC------------CCHHHHHHHhccCCceEEEEEee-cC----CCCCc-----ccE---------EEEE
Q 026078 59 KSTVYVSNLDYA------------LTNSDLHTLFSTFGKIARVTVLK-DR----ATRKS-----RGV---------AFIQ 107 (244)
Q Consensus 59 ~~~lfV~nLp~~------------~te~~L~~~F~~~G~i~~i~i~~-d~----~tg~~-----rg~---------aFV~ 107 (244)
..|||+.+||-. .+++-|...|..||.|..|.|+. |+ -||+. .|| |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888877732 35677999999999998887653 21 23333 334 3344
Q ss_pred eCChhHHHHHHHHhCCce
Q 026078 108 FVQIPDALSAARAIHGKV 125 (244)
Q Consensus 108 f~~~~~A~~Ai~~l~g~~ 125 (244)
|........|+.+|.|..
T Consensus 229 fmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHhHHHHHHHHhcch
Confidence 444445555666666644
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.03 E-value=1.5 Score=40.32 Aligned_cols=78 Identities=3% Similarity=-0.136 Sum_probs=60.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
+..|+..||..+.+.+|.-+|.-||.|..+.+...-..+...-.+||...+ .++..+|..+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999888766544446667788887765 467777776666677888888888753
No 162
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.33 E-value=15 Score=33.26 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCc-eEEEEEeecCCC--CCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~i~i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
-+.|.|.+||+.+++.+|.+-+..|-. +....+.....+ ..-.+.|||.|...++.......++|++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 367889999999999988877666432 111122211111 11256799999999998888888888876
No 163
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=56.50 E-value=32 Score=30.27 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecC-------CCCCcccEEEEEeCChhHHHHHH----HHhCC-
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR-------ATRKSRGVAFIQFVQIPDALSAA----RAIHG- 123 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~-------~tg~~rg~aFV~f~~~~~A~~Ai----~~l~g- 123 (244)
+-..+.|.+.||...++-..+...|.+||+|.+|.++.+. ...+......+.|-+.+.|.... +.|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3345678889999999888888899999999999998765 11233457888999887776543 22222
Q ss_pred -ceeCCeEEEEEEc
Q 026078 124 -KVLNGRTVNASIA 136 (244)
Q Consensus 124 -~~i~gr~i~V~~a 136 (244)
..+....|.|.|.
T Consensus 92 K~~L~S~~L~lsFV 105 (309)
T PF10567_consen 92 KTKLKSESLTLSFV 105 (309)
T ss_pred HHhcCCcceeEEEE
Confidence 2355556666664
No 164
>PRK11901 hypothetical protein; Reviewed
Probab=53.17 E-value=91 Score=27.88 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEE--EeCChhHHHHHHHHhCC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFI--QFVQIPDALSAARAIHG 123 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV--~f~~~~~A~~Ai~~l~g 123 (244)
...+|-|..+ ..++.|..|...++ +..+.|......|+. .|.+| .|.+.++|..||..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455555443 45778888887775 344555544333432 35443 78999999999998864
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=45.48 E-value=41 Score=24.00 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFV 109 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~ 109 (244)
...-|||++++..+.+.-...+....+.-.-+-+..+ ....||+|-.+-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 3466999999999988777666665544333333332 226789998873
No 166
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=42.59 E-value=17 Score=22.21 Aligned_cols=19 Identities=53% Similarity=1.433 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 026078 154 KSRCYECGDEGHLSYECPR 172 (244)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~ 172 (244)
...|..|+..||+.|.|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3569999999999999984
No 167
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.28 E-value=95 Score=28.76 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=27.6
Q ss_pred EEEEEeCChhHHHHHHHHhCCceeC--CeEEEEEEc
Q 026078 103 VAFIQFVQIPDALSAARAIHGKVLN--GRTVNASIA 136 (244)
Q Consensus 103 ~aFV~f~~~~~A~~Ai~~l~g~~i~--gr~i~V~~a 136 (244)
||.|+|.+...+......++|..+. +..+-+.|.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 7999999999999999999998875 455666654
No 168
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=34 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEee
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~ 93 (244)
-...|+|||++++-.-|..++...-.+..+.++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3567999999999999999887765554444443
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.34 E-value=80 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=15.4
Q ss_pred HHHHHHhccCCceEEEEEe
Q 026078 74 SDLHTLFSTFGKIARVTVL 92 (244)
Q Consensus 74 ~~L~~~F~~~G~i~~i~i~ 92 (244)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998766553
No 170
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.91 E-value=40 Score=28.76 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=28.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR 88 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~ 88 (244)
.+...+||+-|||..+|++.|..+.+++|-+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 456688999999999999999999999986543
No 171
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=30.53 E-value=75 Score=23.21 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCCh
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQI 111 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~ 111 (244)
...-||||+++..+.+.-...+-+.++.-.-+-+..+ ....||+|-.+-..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 3467999999998887765555555544222222222 23348999887653
No 172
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.50 E-value=23 Score=32.49 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCEEEEeCCCCCCCHH--------HHHHHhcc--CCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHH
Q 026078 59 KSTVYVSNLDYALTNS--------DLHTLFST--FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~--------~L~~~F~~--~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~ 119 (244)
.+.+|+.++....+.. +|..+|.. ++.+..|.+-.+.....++|..|++|...+.+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3578887777665544 89999998 6777788887776667788999999999999999873
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.63 E-value=39 Score=24.23 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHh
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLF 80 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F 80 (244)
...++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 446899999999999999988643
No 174
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.89 E-value=1.9e+02 Score=27.46 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhc----cCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFS----TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~ 122 (244)
.+..|-++.-....+..+|..+|. .+|.|+.+.+...+. .......++.|.+.++|..++..+-
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 345555553333334456777765 678888887666543 2334567889999999999987653
No 175
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.75 E-value=70 Score=28.05 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=24.4
Q ss_pred EEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 104 AFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 104 aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
|||+|.+..+|..|++.+.... ...+.|..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999654433 34457777643
No 176
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=27.36 E-value=57 Score=27.90 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=22.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhc--cCCce
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFS--TFGKI 86 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~--~~G~i 86 (244)
...++|+|||+.++..-|..++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 46788999999999999988886 44443
No 177
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.87 E-value=1.2e+02 Score=28.76 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=43.2
Q ss_pred EEeCCCCCCCH---HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 63 YVSNLDYALTN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 63 fV~nLp~~~te---~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
+||||+.-... ..|..+=.+||+|..+++-. .-.|...+.+.|..|+. -|+..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 47888765443 34555556899999887733 24677888999999988 57888888875
No 178
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=24.68 E-value=1.3e+02 Score=29.59 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=55.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
.+||+.|-...-+..-+..++..++.++...++.....+....-+|++|..+..+..|.. |.+..+.-..+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ 582 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCL 582 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccce
Confidence 388998888888888888999999999988888877777777889999999877766644 55555544433
No 179
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.57 E-value=2.2e+02 Score=20.50 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=29.3
Q ss_pred EEEEeCCCCCCCHHHH---HHHhccCCceEEEEE--eecCCCCCcccEEEEEeC
Q 026078 61 TVYVSNLDYALTNSDL---HTLFSTFGKIARVTV--LKDRATRKSRGVAFIQFV 109 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L---~~~F~~~G~i~~i~i--~~d~~tg~~rg~aFV~f~ 109 (244)
..|+.+||..+.+..+ +..|..+..-..|.+ ..........|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688999999877664 456666664444443 122334567777766554
No 180
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.13 E-value=56 Score=23.36 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhcc-CCceEEEEEeecCCCCCcccEEEEEeCC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFST-FGKIARVTVLKDRATRKSRGVAFIQFVQ 110 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~i~i~~d~~tg~~rg~aFV~f~~ 110 (244)
...-|||++++..+.+.-...+-+. .+.- .+.+... +....||.|-.+-.
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3467999999998877654444444 2221 2222222 22355788887764
No 181
>PRK10905 cell division protein DamX; Validated
Probab=24.00 E-value=2.6e+02 Score=25.05 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEE--EEEeCChhHHHHHHHHhCC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA--FIQFVQIPDALSAARAIHG 123 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~a--FV~f~~~~~A~~Ai~~l~g 123 (244)
...+|-|+.+. +.+.|..|..++|. ....+......|+. .|- +-.|.+.++|.+||..|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 34556555544 55778888777753 33333333223331 343 3378999999999998863
No 182
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=22.85 E-value=1e+02 Score=25.25 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=40.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CceEEEEEeecCCC-CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTF-GKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~-G~i~~i~i~~d~~t-g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++|.. .|++.|..+..-- |.+..|.+-..... ...+|-.||+|.+.+.|.+++.. +.....-..|...+
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 456655 4444444333221 67777766543221 25678899999999999988773 33333333343333
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=22.83 E-value=80 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc
Q 026078 61 TVYVSNLDYALTNSDLHTLFST 82 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~ 82 (244)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 184
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.26 E-value=1.5e+02 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.4
Q ss_pred cccEEEEEeCChhHHHHHHHHhCCce
Q 026078 100 SRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 100 ~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
.+||-||+=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999988776533
No 185
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.81 E-value=75 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceE
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIA 87 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~ 87 (244)
.+.|+|||+.++...|..++.....+.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~ 129 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFR 129 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCc
Confidence 477899999999998888886533333
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.84 E-value=1.2e+02 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCc
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGK 85 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~ 85 (244)
.+.|+|||+.++...|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999874443
No 187
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.81 E-value=1.2e+02 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=19.6
Q ss_pred EEEEEeCChhHHHHHHHHhCCcee
Q 026078 103 VAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 103 ~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
+.+|.|.+..+|.+|-+.|...-|
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887765444
No 188
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.32 E-value=3.2e+02 Score=19.26 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=39.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc-CC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHH
Q 026078 61 TVYVSNLDYALTNSDLHTLFST-FG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARA 120 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 120 (244)
..|+--++...+..+|++.++. || .|..|..+.-+ ...-=|||.+..-..|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 3555567888999999888877 44 46677665543 1223599999988887776543
Done!