Query 026078
Match_columns 244
No_of_seqs 338 out of 2613
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 6.9E-23 2.4E-27 150.6 12.1 83 56-138 16-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.3E-21 4.6E-26 146.5 12.8 84 56-139 3-86 (110)
3 2khc_A Testis-specific RNP-typ 99.9 6.2E-21 2.1E-25 143.9 14.6 84 54-137 35-118 (118)
4 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.3E-21 1.1E-25 137.4 11.6 84 56-139 3-86 (87)
5 2cpz_A CUG triplet repeat RNA- 99.9 6.9E-21 2.4E-25 143.1 13.9 86 56-141 22-107 (115)
6 2dnz_A Probable RNA-binding pr 99.9 5.6E-21 1.9E-25 138.5 12.5 85 57-141 3-87 (95)
7 2do4_A Squamous cell carcinoma 99.9 1.4E-20 4.9E-25 137.8 14.1 84 56-140 14-97 (100)
8 2e5h_A Zinc finger CCHC-type a 99.9 1E-20 3.4E-25 136.9 13.1 82 56-137 13-94 (94)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.9 5E-21 1.7E-25 140.7 11.6 86 56-141 9-94 (102)
10 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5E-21 1.7E-25 135.9 11.0 82 56-137 4-85 (85)
11 2dnm_A SRP46 splicing factor; 99.9 6.9E-21 2.4E-25 140.3 12.0 85 56-140 10-94 (103)
12 2dgs_A DAZ-associated protein 99.9 1.2E-20 4E-25 138.0 13.1 85 56-141 7-91 (99)
13 1h2v_Z 20 kDa nuclear CAP bind 99.9 9E-21 3.1E-25 150.0 13.5 86 56-141 36-121 (156)
14 2cq0_A Eukaryotic translation 99.9 1.2E-20 4.1E-25 138.9 13.1 86 56-141 12-97 (103)
15 2lxi_A RNA-binding protein 10; 99.8 1.1E-21 3.7E-26 141.9 7.3 83 59-141 1-85 (91)
16 1whw_A Hypothetical protein ri 99.8 1.1E-20 3.7E-25 138.1 12.6 86 56-141 5-90 (99)
17 2dgo_A Cytotoxic granule-assoc 99.8 3.9E-20 1.3E-24 138.9 15.8 87 56-142 12-98 (115)
18 3md1_A Nuclear and cytoplasmic 99.8 1.4E-20 4.7E-25 133.0 12.4 81 60-140 2-82 (83)
19 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.3E-25 139.2 12.5 86 56-141 12-97 (105)
20 2cqc_A Arginine/serine-rich sp 99.8 1.4E-20 4.9E-25 136.3 12.4 83 56-138 12-94 (95)
21 1x5s_A Cold-inducible RNA-bind 99.8 8.3E-21 2.8E-25 139.5 11.2 86 56-141 9-94 (102)
22 1x5t_A Splicing factor 3B subu 99.8 8.4E-21 2.9E-25 137.9 10.8 85 57-141 3-88 (96)
23 1u6f_A Tcubp1, RNA-binding pro 99.8 5.7E-20 1.9E-24 142.5 16.1 88 55-142 38-125 (139)
24 2div_A TRNA selenocysteine ass 99.8 1.1E-20 3.8E-25 138.0 10.9 84 56-139 6-94 (99)
25 1x4h_A RNA-binding protein 28; 99.8 2.9E-20 1E-24 138.5 13.4 86 56-141 12-103 (111)
26 2x1f_A MRNA 3'-END-processing 99.8 1.7E-20 5.9E-25 136.4 11.8 84 58-141 1-84 (96)
27 2dng_A Eukaryotic translation 99.8 4E-20 1.4E-24 136.2 13.8 83 56-140 12-94 (103)
28 2cqd_A RNA-binding region cont 99.8 6.4E-20 2.2E-24 138.0 15.0 84 56-140 14-97 (116)
29 2cq4_A RNA binding motif prote 99.8 1.2E-20 4E-25 141.6 10.9 82 57-139 23-104 (114)
30 4f25_A Polyadenylate-binding p 99.8 1.7E-20 5.9E-25 141.2 11.6 82 58-141 4-85 (115)
31 2la6_A RNA-binding protein FUS 99.8 2.1E-20 7.2E-25 136.8 11.6 82 56-137 10-99 (99)
32 3ex7_B RNA-binding protein 8A; 99.8 1.1E-20 3.8E-25 144.1 10.6 86 56-141 19-104 (126)
33 2lkz_A RNA-binding protein 5; 99.8 7.6E-21 2.6E-25 138.7 9.1 82 57-138 7-94 (95)
34 1x4b_A Heterogeneous nuclear r 99.8 1.7E-20 5.9E-25 141.1 11.3 84 57-141 25-108 (116)
35 1p27_B RNA-binding protein 8A; 99.8 1.8E-20 6.3E-25 138.6 11.2 84 57-140 21-104 (106)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 4.7E-20 1.6E-24 136.1 13.3 84 57-141 13-99 (105)
37 2cph_A RNA binding motif prote 99.8 3.6E-20 1.2E-24 137.1 12.6 86 56-141 12-99 (107)
38 2fy1_A RNA-binding motif prote 99.8 3.6E-20 1.2E-24 139.8 12.8 83 57-140 5-87 (116)
39 2kxn_B Transformer-2 protein h 99.8 1.2E-20 4.2E-25 145.1 10.1 84 56-139 43-126 (129)
40 2cpf_A RNA binding motif prote 99.8 2.2E-20 7.4E-25 136.3 10.9 85 57-141 3-90 (98)
41 3n9u_C Cleavage and polyadenyl 99.8 1.8E-20 6E-25 148.9 11.2 83 57-139 53-137 (156)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 5E-20 1.7E-24 135.9 12.8 83 57-141 13-96 (104)
43 2d9p_A Polyadenylate-binding p 99.8 5.3E-20 1.8E-24 135.5 12.8 84 56-141 12-95 (103)
44 1oo0_B CG8781-PA, drosophila Y 99.8 3.3E-20 1.1E-24 138.2 11.6 85 56-140 23-107 (110)
45 1x4a_A Splicing factor, argini 99.8 1.3E-19 4.5E-24 134.8 14.7 82 56-140 19-100 (109)
46 2cpe_A RNA-binding protein EWS 99.8 5.2E-20 1.8E-24 137.8 12.5 86 56-141 12-105 (113)
47 2dgp_A Bruno-like 4, RNA bindi 99.8 2.9E-20 1E-24 137.5 10.9 85 56-140 10-97 (106)
48 2dgx_A KIAA0430 protein; RRM d 99.8 4.8E-20 1.6E-24 134.3 11.8 82 56-140 6-91 (96)
49 2do0_A HnRNP M, heterogeneous 99.8 1.9E-19 6.4E-24 134.8 15.4 83 56-139 12-94 (114)
50 2jrs_A RNA-binding protein 39; 99.8 4.7E-20 1.6E-24 137.5 12.0 84 56-139 23-106 (108)
51 2cqp_A RNA-binding protein 12; 99.8 2.8E-20 9.5E-25 135.7 10.5 84 56-139 12-95 (98)
52 3p5t_L Cleavage and polyadenyl 99.8 4.6E-21 1.6E-25 138.1 6.1 81 60-140 2-84 (90)
53 3ns6_A Eukaryotic translation 99.8 6.6E-21 2.3E-25 140.1 6.7 82 58-139 5-93 (100)
54 2cq3_A RNA-binding protein 9; 99.8 2.4E-19 8.1E-24 132.0 14.9 85 56-142 12-96 (103)
55 3ulh_A THO complex subunit 4; 99.8 7.2E-20 2.5E-24 135.6 12.2 81 56-137 26-106 (107)
56 2dhg_A TRNA selenocysteine ass 99.8 4.1E-20 1.4E-24 136.2 10.7 84 56-140 6-91 (104)
57 3ucg_A Polyadenylate-binding p 99.8 8.1E-20 2.8E-24 130.7 11.8 80 59-139 6-85 (89)
58 3s7r_A Heterogeneous nuclear r 99.8 1.2E-19 4.1E-24 129.4 12.3 80 56-136 8-87 (87)
59 2ywk_A Putative RNA-binding pr 99.8 6.9E-20 2.4E-24 132.7 11.1 82 56-138 13-94 (95)
60 2dh8_A DAZ-associated protein 99.8 7.1E-20 2.4E-24 135.2 11.4 85 56-141 13-97 (105)
61 3pgw_S U1-70K; protein-RNA com 99.8 2.1E-19 7.2E-24 164.5 16.7 85 57-141 100-184 (437)
62 4a8x_A RNA-binding protein wit 99.8 6.5E-20 2.2E-24 130.8 10.5 82 58-139 3-85 (88)
63 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.9E-19 1E-23 131.5 14.2 83 56-140 12-94 (103)
64 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.8E-24 129.4 12.9 82 56-140 7-88 (91)
65 2cqg_A TDP-43, TAR DNA-binding 99.8 3.3E-19 1.1E-23 131.2 14.2 84 56-141 12-95 (103)
66 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-19 4.2E-24 145.0 12.4 86 56-141 69-154 (165)
67 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-19 3.8E-24 130.9 10.8 83 56-140 5-87 (92)
68 3q2s_C Cleavage and polyadenyl 99.8 1.3E-20 4.6E-25 158.5 6.9 82 58-139 67-150 (229)
69 2ek1_A RNA-binding protein 12; 99.8 3.5E-20 1.2E-24 134.3 8.1 82 56-137 12-93 (95)
70 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-19 7.2E-24 139.0 13.0 82 55-136 59-140 (140)
71 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-19 4.7E-24 135.1 11.3 84 56-140 22-105 (109)
72 1wel_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 140.7 8.8 83 56-139 22-104 (124)
73 1x5o_A RNA binding motif, sing 99.8 4.5E-19 1.5E-23 132.8 13.8 83 56-139 22-112 (114)
74 2m2b_A RNA-binding protein 10; 99.8 3.9E-20 1.3E-24 142.4 8.1 82 57-139 21-108 (131)
75 1x4c_A Splicing factor, argini 99.8 6.2E-19 2.1E-23 131.1 14.2 77 57-140 13-94 (108)
76 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.3E-20 1.1E-24 136.1 6.9 82 56-139 16-98 (100)
77 2dis_A Unnamed protein product 99.8 1.7E-19 5.7E-24 134.1 10.8 86 56-141 5-94 (109)
78 1x4e_A RNA binding motif, sing 99.8 2.4E-20 8.1E-25 132.5 5.7 82 56-137 2-83 (85)
79 1s79_A Lupus LA protein; RRM, 99.8 7E-20 2.4E-24 135.5 7.8 81 56-138 8-88 (103)
80 2kt5_A RNA and export factor-b 99.8 4.4E-19 1.5E-23 135.0 12.4 84 56-140 32-115 (124)
81 2fc9_A NCL protein; structure 99.8 6.8E-19 2.3E-23 129.0 12.9 81 56-140 12-92 (101)
82 2kn4_A Immunoglobulin G-bindin 99.8 3.5E-19 1.2E-23 140.8 12.2 85 56-140 67-151 (158)
83 2err_A Ataxin-2-binding protei 99.8 2.8E-19 9.5E-24 133.3 11.0 82 56-139 26-107 (109)
84 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.7E-24 133.8 8.7 84 58-141 7-90 (104)
85 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.4E-24 133.8 9.4 80 56-141 13-94 (105)
86 2jwn_A Embryonic polyadenylate 99.8 3.2E-19 1.1E-23 135.6 11.3 81 58-139 35-115 (124)
87 2cpi_A CCR4-NOT transcription 99.8 3.1E-19 1E-23 133.5 10.9 84 57-140 13-102 (111)
88 1wez_A HnRNP H', FTP-3, hetero 99.8 3.2E-19 1.1E-23 131.6 10.5 81 56-139 12-92 (102)
89 2fc8_A NCL protein; structure 99.8 7.4E-19 2.5E-23 129.0 12.4 83 56-141 12-94 (102)
90 2mss_A Protein (musashi1); RNA 99.8 1E-19 3.4E-24 126.2 6.5 75 61-136 1-75 (75)
91 1why_A Hypothetical protein ri 99.8 1.1E-18 3.6E-23 127.1 12.3 79 56-140 14-94 (97)
92 2cpy_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 134.0 9.6 82 56-139 12-94 (114)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-19 4.1E-24 126.3 6.7 76 60-136 1-76 (77)
94 2nlw_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 131.1 10.3 80 58-139 14-100 (105)
95 2cq1_A PTB-like protein L; RRM 99.8 1.5E-18 5.1E-23 127.9 12.8 79 56-140 12-92 (101)
96 2wbr_A GW182, gawky, LD47780P; 99.8 6E-19 2E-23 125.9 10.2 75 57-137 5-79 (89)
97 2cpx_A Hypothetical protein FL 99.8 2.2E-19 7.6E-24 134.6 8.4 85 56-140 22-106 (115)
98 2lea_A Serine/arginine-rich sp 99.8 1.4E-19 4.7E-24 140.3 7.0 85 56-140 44-128 (135)
99 2xnq_A Nuclear polyadenylated 99.8 1.3E-18 4.3E-23 127.1 11.7 78 54-139 17-95 (97)
100 2db1_A Heterogeneous nuclear r 99.8 7.1E-19 2.4E-23 133.0 10.8 80 57-138 15-97 (118)
101 2e5j_A Methenyltetrahydrofolat 99.8 9.2E-19 3.1E-23 127.6 10.9 80 56-140 16-95 (97)
102 1wg5_A Heterogeneous nuclear r 99.8 8.5E-19 2.9E-23 129.6 10.8 81 57-139 13-94 (104)
103 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.5E-23 124.9 11.5 78 56-141 5-82 (90)
104 2ki2_A SS-DNA binding protein 99.8 6.7E-20 2.3E-24 131.6 4.6 81 60-141 2-82 (90)
105 2hvz_A Splicing factor, argini 99.8 7.6E-19 2.6E-23 128.8 10.1 78 60-142 1-78 (101)
106 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.8E-23 128.1 10.8 78 56-139 18-97 (100)
107 2a3j_A U1 small nuclear ribonu 99.8 7.6E-19 2.6E-23 134.8 10.3 82 56-140 26-111 (127)
108 1wf1_A RNA-binding protein RAL 99.8 3.5E-18 1.2E-22 127.3 13.6 76 56-139 24-100 (110)
109 2jvo_A Nucleolar protein 3; nu 99.8 1E-18 3.5E-23 130.2 10.6 77 56-140 28-104 (108)
110 2dgt_A RNA-binding protein 30; 99.8 3.1E-18 1E-22 123.5 12.7 78 56-141 7-84 (92)
111 1x4d_A Matrin 3; structural ge 99.8 7.1E-19 2.4E-23 129.8 9.4 77 57-139 13-92 (102)
112 1fj7_A Nucleolin RBD1, protein 99.8 1.2E-19 4E-24 133.2 4.9 82 57-140 15-96 (101)
113 2dgu_A Heterogeneous nuclear r 99.8 4.8E-18 1.6E-22 125.1 13.4 77 57-141 9-85 (103)
114 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.9E-23 130.3 10.0 79 57-138 14-92 (109)
115 1x4g_A Nucleolysin TIAR; struc 99.8 2E-18 6.9E-23 128.4 11.3 80 56-141 22-101 (109)
116 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-18 5.8E-23 131.2 10.7 79 56-140 28-108 (119)
117 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 5.7E-23 129.9 10.5 81 56-139 5-85 (115)
118 2hgl_A HNRPF protein, heteroge 99.8 7.2E-19 2.5E-23 136.4 8.4 81 56-138 41-124 (136)
119 2cpj_A Non-POU domain-containi 99.8 2.8E-18 9.5E-23 125.4 11.1 79 56-140 12-90 (99)
120 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.8E-23 130.8 9.1 80 56-139 25-105 (111)
121 2ytc_A PRE-mRNA-splicing facto 99.8 3E-18 1E-22 121.4 11.0 76 56-137 9-85 (85)
122 1nu4_A U1A RNA binding domain; 99.8 1.1E-18 3.8E-23 126.8 8.8 82 56-140 5-90 (97)
123 1x4f_A Matrin 3; structural ge 99.8 2.8E-18 9.5E-23 128.6 11.1 79 56-140 22-103 (112)
124 1wex_A Hypothetical protein (r 99.8 2.9E-18 1E-22 127.0 11.0 79 56-140 12-92 (104)
125 2la4_A Nuclear and cytoplasmic 99.8 1.4E-18 4.9E-23 127.3 9.1 77 56-138 24-100 (101)
126 2f3j_A RNA and export factor b 99.8 6.1E-18 2.1E-22 136.9 13.6 84 55-139 84-167 (177)
127 2dnp_A RNA-binding protein 14; 99.8 4.2E-18 1.4E-22 122.2 11.2 76 56-139 6-81 (90)
128 1fjc_A Nucleolin RBD2, protein 99.8 1.5E-18 5E-23 126.0 8.6 81 56-141 13-93 (96)
129 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-17 4.8E-22 121.6 13.8 77 56-140 12-90 (99)
130 4f02_A Polyadenylate-binding p 99.8 4.1E-18 1.4E-22 141.2 12.3 83 57-139 13-95 (213)
131 2krb_A Eukaryotic translation 99.8 6E-19 2.1E-23 124.3 6.0 73 59-133 1-80 (81)
132 2lcw_A RNA-binding protein FUS 99.6 4.2E-20 1.4E-24 139.1 0.0 86 56-141 4-97 (116)
133 2lmi_A GRSF-1, G-rich sequence 99.8 5.5E-19 1.9E-23 131.2 6.0 81 56-138 8-91 (107)
134 2kvi_A Nuclear polyadenylated 99.8 2E-18 6.8E-23 125.6 8.7 78 56-141 7-85 (96)
135 1iqt_A AUF1, heterogeneous nuc 99.8 5.1E-19 1.7E-23 122.6 4.7 75 61-136 1-75 (75)
136 2cqh_A IGF-II mRNA-binding pro 99.8 3.4E-18 1.2E-22 123.4 9.1 77 57-140 6-84 (93)
137 2xs2_A Deleted in azoospermia- 99.7 2.5E-18 8.5E-23 126.2 7.9 82 57-141 7-88 (102)
138 2i2y_A Fusion protein consists 99.7 7.2E-18 2.5E-22 132.4 10.3 79 56-139 70-148 (150)
139 1fxl_A Paraneoplastic encephal 99.7 1.7E-17 5.8E-22 130.8 12.5 81 59-139 2-82 (167)
140 3md3_A Nuclear and cytoplasmic 99.7 2.6E-17 8.9E-22 129.6 13.5 82 56-137 84-165 (166)
141 1whx_A Hypothetical protein ri 99.7 2.8E-18 9.6E-23 128.4 7.4 77 57-139 8-84 (111)
142 2yh0_A Splicing factor U2AF 65 99.7 5.9E-17 2E-21 131.6 15.8 86 56-141 111-196 (198)
143 1x5p_A Negative elongation fac 99.7 5.7E-17 2E-21 118.0 14.0 77 57-141 13-89 (97)
144 2e44_A Insulin-like growth fac 99.7 9.9E-18 3.4E-22 121.6 9.8 79 57-139 13-92 (96)
145 3egn_A RNA-binding protein 40; 99.7 1.8E-18 6.2E-23 134.8 6.1 81 56-139 42-130 (143)
146 2e5g_A U6 snRNA-specific termi 99.7 1.8E-17 6.3E-22 119.9 11.0 76 58-139 7-82 (94)
147 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.8E-22 131.7 11.0 83 58-140 2-84 (168)
148 2j8a_A Histone-lysine N-methyl 99.7 1.1E-17 3.6E-22 127.3 9.8 79 60-138 3-95 (136)
149 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.8E-23 135.8 4.4 82 56-140 43-124 (139)
150 2hgm_A HNRPF protein, heteroge 99.7 6.4E-18 2.2E-22 129.3 8.1 80 56-138 39-120 (126)
151 3beg_B Splicing factor, argini 99.7 8.8E-18 3E-22 126.4 8.2 75 57-138 14-93 (115)
152 2diu_A KIAA0430 protein; struc 99.7 1.8E-17 6.1E-22 119.4 9.1 74 59-142 9-87 (96)
153 2dha_A FLJ20171 protein; RRM d 99.7 5.3E-18 1.8E-22 129.3 6.7 80 57-138 21-104 (123)
154 1wg1_A KIAA1579 protein, homol 99.7 2.4E-17 8.2E-22 117.9 9.5 74 58-138 4-77 (88)
155 1l3k_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 132.7 11.6 86 57-143 102-187 (196)
156 2qfj_A FBP-interacting repress 99.7 4.3E-17 1.5E-21 134.1 11.9 84 57-140 123-206 (216)
157 2g4b_A Splicing factor U2AF 65 99.7 5.2E-17 1.8E-21 129.0 11.7 79 58-136 93-171 (172)
158 2e5i_A Heterogeneous nuclear r 99.7 2E-16 7E-21 120.6 13.8 74 61-140 27-103 (124)
159 1l3k_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 131.5 11.3 149 56-220 10-165 (196)
160 3d2w_A TAR DNA-binding protein 99.7 6.7E-17 2.3E-21 116.1 9.7 77 55-140 7-85 (89)
161 2cq2_A Hypothetical protein LO 99.7 3.9E-17 1.3E-21 122.6 8.6 78 57-140 23-107 (114)
162 2cjk_A Nuclear polyadenylated 99.7 2.4E-17 8.2E-22 130.3 7.8 81 58-139 86-166 (167)
163 3zzy_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 122.5 11.2 76 59-139 28-106 (130)
164 1sjr_A Polypyrimidine tract-bi 99.7 9.5E-17 3.3E-21 127.7 10.1 78 59-140 46-125 (164)
165 3tyt_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 131.8 11.2 78 57-139 2-80 (205)
166 4f02_A Polyadenylate-binding p 99.7 1.1E-16 3.6E-21 132.7 10.6 79 59-139 103-181 (213)
167 2dnl_A Cytoplasmic polyadenyla 99.7 1E-16 3.5E-21 120.2 9.0 79 57-138 6-87 (114)
168 1b7f_A Protein (SXL-lethal pro 99.7 2.5E-16 8.6E-21 124.4 11.7 80 57-136 87-168 (168)
169 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.7E-21 131.1 10.1 83 58-140 27-109 (216)
170 2hzc_A Splicing factor U2AF 65 99.7 1.5E-16 5.1E-21 113.0 8.7 72 57-135 4-86 (87)
171 3md3_A Nuclear and cytoplasmic 99.7 2.8E-16 9.5E-21 123.6 11.0 80 60-140 1-80 (166)
172 2bz2_A Negative elongation fac 99.7 2.4E-16 8.1E-21 119.7 9.8 77 56-140 36-112 (121)
173 2pe8_A Splicing factor 45; RRM 99.7 6.9E-16 2.4E-20 114.3 11.7 82 57-138 6-93 (105)
174 1wf0_A TDP-43, TAR DNA-binding 99.7 1.2E-16 4.3E-21 114.0 7.4 77 57-140 3-79 (88)
175 1fxl_A Paraneoplastic encephal 99.7 3.5E-16 1.2E-20 123.2 10.6 79 58-136 87-167 (167)
176 3nmr_A Cugbp ELAV-like family 99.7 5E-16 1.7E-20 123.4 10.3 82 58-139 2-88 (175)
177 2cjk_A Nuclear polyadenylated 99.7 2.9E-16 1E-20 124.1 8.7 80 58-139 2-81 (167)
178 1fje_B Nucleolin RBD12, protei 99.6 7.3E-16 2.5E-20 122.9 10.9 78 57-139 97-174 (175)
179 3nmr_A Cugbp ELAV-like family 99.6 6.4E-16 2.2E-20 122.7 10.1 80 57-137 93-175 (175)
180 3pgw_A U1-A; protein-RNA compl 99.6 9.6E-16 3.3E-20 131.6 11.8 82 56-140 6-91 (282)
181 2voo_A Lupus LA protein; RNA-b 99.6 1E-15 3.5E-20 125.3 11.3 78 59-138 109-186 (193)
182 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 8.9E-20 128.9 14.2 77 56-137 204-281 (282)
183 2ghp_A U4/U6 snRNA-associated 99.6 8.2E-16 2.8E-20 132.6 10.5 83 56-139 207-291 (292)
184 3u1l_A PRE-mRNA-splicing facto 99.6 7.4E-16 2.5E-20 130.0 8.3 80 56-141 131-231 (240)
185 3smz_A Protein raver-1, ribonu 99.6 3.3E-15 1.1E-19 128.4 12.4 145 57-220 93-245 (284)
186 2adc_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 127.1 9.3 79 56-139 31-110 (229)
187 3smz_A Protein raver-1, ribonu 99.6 4.6E-15 1.6E-19 127.4 12.0 84 57-141 182-266 (284)
188 2dit_A HIV TAT specific factor 99.6 1.1E-14 3.7E-19 108.8 12.3 81 56-140 12-103 (112)
189 1fje_B Nucleolin RBD12, protei 99.6 6E-16 2.1E-20 123.4 4.1 139 56-220 10-155 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 121.8 7.4 77 59-140 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 4.4E-15 1.5E-19 122.7 8.2 79 56-136 120-204 (205)
192 3sde_A Paraspeckle component 1 99.6 1.4E-14 4.7E-19 123.6 11.2 77 56-138 19-95 (261)
193 1qm9_A Polypyrimidine tract-bi 99.6 2E-14 6.8E-19 117.0 10.6 79 56-139 117-197 (198)
194 3v4m_A Splicing factor U2AF 65 99.5 2.1E-14 7E-19 106.3 9.4 82 57-138 3-96 (105)
195 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 120.5 10.1 79 56-139 148-228 (229)
196 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.1E-18 121.1 10.9 81 58-139 95-179 (261)
197 2ghp_A U4/U6 snRNA-associated 99.5 2.1E-14 7.2E-19 123.8 9.7 147 58-218 116-271 (292)
198 1jmt_A Splicing factor U2AF 35 99.5 6E-15 2E-19 109.1 5.0 72 64-136 20-103 (104)
199 2yh0_A Splicing factor U2AF 65 99.5 3.4E-14 1.2E-18 115.1 9.9 75 58-139 3-88 (198)
200 2g4b_A Splicing factor U2AF 65 99.5 3E-14 1E-18 112.9 9.4 75 58-139 3-88 (172)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.1E-14 1.4E-18 106.9 8.9 81 57-137 18-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.6E-13 2.6E-17 97.0 11.8 66 69-141 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 4.8E-13 1.7E-17 118.4 10.4 76 56-137 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3.3E-12 1.1E-16 95.8 10.3 78 57-138 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.5E-11 5E-16 92.9 9.1 77 55-137 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.8E-11 6.2E-16 87.3 8.7 75 56-139 4-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 3.8E-10 1.3E-14 80.8 6.8 73 55-136 11-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.1E-09 7.2E-14 89.0 8.3 66 72-137 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 7E-07 2.4E-11 65.3 9.6 71 59-135 21-96 (117)
210 1wey_A Calcipressin 1; structu 97.7 0.00013 4.4E-09 52.9 7.3 74 59-138 5-83 (104)
211 1uw4_A UPF3X; nonsense mediate 97.7 0.00059 2E-08 48.4 10.4 77 60-136 2-85 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.6 0.00066 2.2E-08 49.1 9.7 71 59-138 8-83 (104)
213 1whv_A Poly(A)-specific ribonu 97.6 0.0005 1.7E-08 49.1 8.9 54 59-121 16-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.3 0.00049 1.7E-08 49.3 6.3 54 60-122 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.2 0.0016 5.6E-08 48.3 8.4 73 57-137 22-95 (119)
216 2l08_A Regulator of nonsense t 96.9 0.0027 9.1E-08 45.4 6.5 78 59-136 9-93 (97)
217 2kn4_A Immunoglobulin G-bindin 96.7 0.00095 3.3E-08 51.5 3.3 36 88-125 2-37 (158)
218 3p3d_A Nucleoporin 53; structu 96.5 0.0025 8.5E-08 48.1 4.4 78 58-137 6-97 (132)
219 3pq1_A Poly(A) RNA polymerase; 95.9 0.0047 1.6E-07 56.3 3.6 55 59-119 53-107 (464)
220 2i2y_A Fusion protein consists 95.3 0.0094 3.2E-07 45.5 2.9 40 98-138 10-50 (150)
221 1a6b_B Momulv, zinc finger pro 94.8 0.054 1.8E-06 32.1 4.6 33 150-182 6-38 (40)
222 1u6p_A GAG polyprotein; MLV, A 93.3 0.083 2.9E-06 33.7 3.5 34 149-182 18-51 (56)
223 3ts2_A Protein LIN-28 homolog 92.4 0.014 4.7E-07 45.1 -1.3 19 154-172 97-115 (148)
224 3d45_A Poly(A)-specific ribonu 91.3 0.63 2.1E-05 42.9 8.2 55 59-122 440-494 (507)
225 2g0c_A ATP-dependent RNA helic 89.9 0.71 2.4E-05 30.7 5.5 68 61-137 2-75 (76)
226 1dsq_A Nucleic acid binding pr 83.6 0.85 2.9E-05 24.0 2.4 19 155-173 3-21 (26)
227 4f25_A Polyadenylate-binding p 68.8 1.4 4.8E-05 31.5 0.8 19 57-75 95-113 (115)
228 4eyt_A Telomerase associated p 64.5 33 0.0011 23.8 7.5 57 57-121 10-66 (129)
229 4e8u_A Putative uncharacterize 60.7 32 0.0011 26.8 7.2 57 60-119 13-81 (172)
230 1cl4_A Protein (GAG polyprotei 52.2 19 0.00065 22.4 3.9 22 154-175 30-51 (60)
231 1nc8_A Nucleocapsid protein; H 50.1 8 0.00027 20.6 1.6 18 155-172 7-24 (29)
232 3nyb_B Protein AIR2; polya RNA 44.5 11 0.00039 25.6 2.0 20 155-174 47-66 (83)
233 2li8_A Protein LIN-28 homolog 40.9 26 0.0009 23.1 3.3 20 153-172 23-42 (74)
234 2ihx_A Nucleocapsid (NC) prote 40.5 14 0.00049 23.3 1.9 21 155-175 31-51 (61)
235 2ysa_A Retinoblastoma-binding 39.9 10 0.00035 23.7 1.1 20 154-173 7-26 (55)
236 4bby_A Alkyldihydroxyacetoneph 35.3 29 0.00097 32.7 3.8 56 65-121 349-408 (658)
237 3pgw_S U1-70K; protein-RNA com 34.4 4.3 0.00015 36.4 -1.9 14 76-89 9-22 (437)
238 2ec7_A GAG polyprotein (PR55GA 33.3 30 0.001 20.7 2.4 18 155-172 7-24 (49)
239 3fut_A Dimethyladenosine trans 32.8 41 0.0014 27.9 4.0 33 60-93 111-143 (271)
240 3uzu_A Ribosomal RNA small sub 31.9 18 0.00062 30.2 1.7 34 60-93 115-148 (279)
241 2a51_A Nucleocapsid protein; s 30.1 38 0.0013 19.0 2.4 17 155-171 22-38 (39)
242 1xn9_A 30S ribosomal protein S 28.6 1E+02 0.0035 21.6 4.9 48 69-117 28-80 (101)
243 2cqf_A RNA-binding protein LIN 28.2 44 0.0015 21.1 2.7 18 155-172 8-25 (63)
244 1i4w_A Mitochondrial replicati 27.2 42 0.0014 29.1 3.3 23 60-82 143-165 (353)
245 1ywx_A 30S ribosomal protein S 26.3 1.2E+02 0.0042 21.2 5.0 47 69-116 28-79 (102)
246 2bl6_A Nucleocapsid protein P1 26.2 38 0.0013 18.8 1.9 17 156-172 2-18 (37)
247 1qyr_A KSGA, high level kasuga 24.7 61 0.0021 26.4 3.7 32 60-91 91-122 (252)
248 2v94_A RPS24, 30S ribosomal pr 24.6 1.3E+02 0.0044 21.3 4.9 47 70-117 38-89 (107)
249 1a1t_A Nucleocapsid protein; s 22.1 43 0.0015 20.3 1.7 15 157-171 15-29 (55)
250 3tqs_A Ribosomal RNA small sub 21.6 30 0.001 28.3 1.2 33 61-93 98-130 (255)
251 3ftd_A Dimethyladenosine trans 21.5 58 0.002 26.4 2.9 33 60-92 96-128 (249)
252 3lpe_A Putative transcription 20.7 75 0.0026 21.6 3.0 35 86-125 40-74 (92)
253 2lfv_A Protein DAMX; cell divi 25.0 23 0.00077 25.2 0.0 53 71-125 34-88 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=150.65 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...+++|||+|||+.+|+++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||..|||..|.|+.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=146.49 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=80.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8653
No 3
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=6.2e-21 Score=143.89 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 54 GLAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEcc
Q 026078 134 SIAA 137 (244)
Q Consensus 134 ~~a~ 137 (244)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=137.40 Aligned_cols=84 Identities=32% Similarity=0.506 Sum_probs=77.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 5
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=6.9e-21 Score=143.10 Aligned_cols=86 Identities=17% Similarity=0.388 Sum_probs=81.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 976543
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.6e-21 Score=138.52 Aligned_cols=85 Identities=29% Similarity=0.500 Sum_probs=80.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77543
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=137.81 Aligned_cols=84 Identities=17% Similarity=0.425 Sum_probs=79.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 8
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=136.90 Aligned_cols=82 Identities=57% Similarity=0.856 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=140.68 Aligned_cols=86 Identities=31% Similarity=0.471 Sum_probs=81.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987543
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5e-21 Score=135.86 Aligned_cols=82 Identities=33% Similarity=0.519 Sum_probs=78.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=140.26 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=80.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.|+.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98653
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=138.03 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=80.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. ||++.|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987543
No 13
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=9e-21 Score=150.01 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=81.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.|+.++|||||+|.+.++|.+||..||++.|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987543
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=138.95 Aligned_cols=86 Identities=33% Similarity=0.472 Sum_probs=81.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45569999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=141.95 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC-CceeCCeEEEEEEc
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH-GKVLNGRTVNASIA 136 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~-g~~i~gr~i~V~~a 136 (244)
+++|||+|||+.+|+++|+++|++|| .|..|.|+.++.|+.++|||||+|.+.++|.+||+.|+ +..|.|+.|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++++
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=138.11 Aligned_cols=86 Identities=27% Similarity=0.504 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987643
No 17
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=3.9e-20 Score=138.90 Aligned_cols=87 Identities=32% Similarity=0.519 Sum_probs=81.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026078 136 AADNGRA 142 (244)
Q Consensus 136 a~~~~~~ 142 (244)
+.++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876443
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.4e-20 Score=132.99 Aligned_cols=81 Identities=28% Similarity=0.430 Sum_probs=77.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 026078 140 G 140 (244)
Q Consensus 140 ~ 140 (244)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=139.22 Aligned_cols=86 Identities=27% Similarity=0.409 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 977543
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=136.25 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 21
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=139.50 Aligned_cols=86 Identities=34% Similarity=0.635 Sum_probs=81.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987543
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.4e-21 Score=137.85 Aligned_cols=85 Identities=29% Similarity=0.483 Sum_probs=80.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEE-EEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+.++|||+|||+.+++++|.++|+.||.|..| .|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987543
No 23
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-20 Score=142.48 Aligned_cols=88 Identities=24% Similarity=0.398 Sum_probs=82.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.....++|||+|||+.+++++|.++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 026078 135 IAADNGRA 142 (244)
Q Consensus 135 ~a~~~~~~ 142 (244)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876433
No 24
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=138.04 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=79.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceE-EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE----
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA-RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT---- 130 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~---- 130 (244)
..+.++|||+|||+.+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45579999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 026078 131 VNASIAADN 139 (244)
Q Consensus 131 i~V~~a~~~ 139 (244)
|+|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999764
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=138.50 Aligned_cols=86 Identities=27% Similarity=0.445 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC------CceeCCe
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH------GKVLNGR 129 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~------g~~i~gr 129 (244)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCC
Q 026078 130 TVNASIAADNGR 141 (244)
Q Consensus 130 ~i~V~~a~~~~~ 141 (244)
.|.|.++.++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.7e-20 Score=136.45 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026078 138 DNGR 141 (244)
Q Consensus 138 ~~~~ 141 (244)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 27
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4e-20 Score=136.22 Aligned_cols=83 Identities=24% Similarity=0.487 Sum_probs=78.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.|+.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44568999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97654
No 28
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-20 Score=137.97 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=79.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..|++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44569999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97653
No 29
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=141.60 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=77.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||++.|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.7e-20 Score=141.25 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||..||++.|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 4589999999999999999999999999999999999998
Q ss_pred CCCC
Q 026078 138 DNGR 141 (244)
Q Consensus 138 ~~~~ 141 (244)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7543
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=136.76 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEE--------EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--------VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
.++.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|..||..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 026078 128 GRTVNASIAA 137 (244)
Q Consensus 128 gr~i~V~~a~ 137 (244)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 32
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=1.1e-20 Score=144.10 Aligned_cols=86 Identities=20% Similarity=0.383 Sum_probs=80.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 986543
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=138.73 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCc--eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc----eeCCeE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGK--IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGRT 130 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~----~i~gr~ 130 (244)
..-.+|||+|||+.+|+++|.++|++||. |..|+|+.|+.|++++|||||+|.+.++|.+||+.||+. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34479999999999999999999999995 679999999999999999999999999999999999986 589999
Q ss_pred EEEEEccC
Q 026078 131 VNASIAAD 138 (244)
Q Consensus 131 i~V~~a~~ 138 (244)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999964
No 34
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=141.11 Aligned_cols=84 Identities=23% Similarity=0.494 Sum_probs=79.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +++.|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=138.57 Aligned_cols=84 Identities=20% Similarity=0.391 Sum_probs=79.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
.+++
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=4.7e-20 Score=136.11 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=78.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC---eEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG---RTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g---r~i~V 133 (244)
++.++|||+|||+.+++++|.++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred EEccCCCC
Q 026078 134 SIAADNGR 141 (244)
Q Consensus 134 ~~a~~~~~ 141 (244)
.|+.+...
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987543
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=137.13 Aligned_cols=86 Identities=29% Similarity=0.477 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeec-CCCCCcccEEEEEeCChhHHHHHHHHh-CCceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKD-RATRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d-~~tg~~rg~aFV~f~~~~~A~~Ai~~l-~g~~i~gr~i~V 133 (244)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445689999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 026078 134 SIAADNGR 141 (244)
Q Consensus 134 ~~a~~~~~ 141 (244)
.|+.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=139.83 Aligned_cols=83 Identities=33% Similarity=0.553 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.2e-20 Score=145.10 Aligned_cols=84 Identities=31% Similarity=0.517 Sum_probs=80.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9764
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=136.27 Aligned_cols=85 Identities=22% Similarity=0.465 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCC---CCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRA---TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~---tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
++.++|||+|||+.+++++|+++|+.||.|..|.|+.++. |+.++|||||+|.+.++|.+||..||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 026078 134 SIAADNGR 141 (244)
Q Consensus 134 ~~a~~~~~ 141 (244)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976543
No 41
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=148.87 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCC--ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
...++|||+|||+++|+++|.++|+.|| .|..|.|+.|+.||+++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=135.94 Aligned_cols=83 Identities=18% Similarity=0.432 Sum_probs=77.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCC-CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~t-g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999888 999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 977543
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=135.48 Aligned_cols=84 Identities=24% Similarity=0.464 Sum_probs=78.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987543
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3.3e-20 Score=138.22 Aligned_cols=85 Identities=21% Similarity=0.396 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97653
No 45
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=134.77 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455689999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97653
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=137.78 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=80.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceE--------EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--------RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
..+.++|||+|||+.+|+++|+++|+.||.|. .|.|+.++.++.++|||||+|.+.++|.+||..||++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 026078 128 GRTVNASIAADNGR 141 (244)
Q Consensus 128 gr~i~V~~a~~~~~ 141 (244)
|+.|+|.++.++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987543
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.9e-20 Score=137.47 Aligned_cols=85 Identities=31% Similarity=0.495 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee---CCeEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGRTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i---~gr~i~ 132 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45568999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEEccCCC
Q 026078 133 ASIAADNG 140 (244)
Q Consensus 133 V~~a~~~~ 140 (244)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997653
No 48
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=134.30 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=76.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
....++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4556899999999999999999 99999999999999998765 8899999999999999999999999999999
Q ss_pred EEEEccCCC
Q 026078 132 NASIAADNG 140 (244)
Q Consensus 132 ~V~~a~~~~ 140 (244)
+|.++++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997653
No 49
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=134.81 Aligned_cols=83 Identities=31% Similarity=0.510 Sum_probs=77.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|..||..||++.|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8754
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=137.46 Aligned_cols=84 Identities=26% Similarity=0.499 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=135.67 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=78.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+..++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4.6e-21 Score=138.05 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=73.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCC--ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+|||+|||+.+|+++|+++|+.|| .|..|.|+.++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=6.6e-21 Score=140.06 Aligned_cols=82 Identities=26% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC-eE
Q 026078 58 SKSTVYVSNLDY------ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-RT 130 (244)
Q Consensus 58 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g-r~ 130 (244)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.|++++|||||+|.+.++|.+||..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 358999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEccCC
Q 026078 131 VNASIAADN 139 (244)
Q Consensus 131 i~V~~a~~~ 139 (244)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-19 Score=131.96 Aligned_cols=85 Identities=28% Similarity=0.516 Sum_probs=77.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998864 3899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026078 136 AADNGRA 142 (244)
Q Consensus 136 a~~~~~~ 142 (244)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876443
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=7.2e-20 Score=135.59 Aligned_cols=81 Identities=32% Similarity=0.590 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=136.22 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=79.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhcc-CCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce-eCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFST-FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV-LNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~-i~gr~i~V 133 (244)
..+.++|||+|||+.+|+++|.++|+. ||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 455689999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997653
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=8.1e-20 Score=130.67 Aligned_cols=80 Identities=28% Similarity=0.528 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999989999999999999999999999 8999999999999999976
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.2e-19 Score=129.41 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++..|.|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4556899999999999999999999999999999999999999999999999999999999997 688999999999998
Q ss_pred c
Q 026078 136 A 136 (244)
Q Consensus 136 a 136 (244)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=132.72 Aligned_cols=82 Identities=29% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999975 89999999999999999999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 853
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=135.24 Aligned_cols=85 Identities=25% Similarity=0.503 Sum_probs=79.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |++.|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976543
No 61
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=2.1e-19 Score=164.48 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=80.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.||+++|.++|++||.|..|.|+.++.|++++|||||+|.+.++|.+||..|||+.|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87643
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=130.81 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=77.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCC-cccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK-SRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~-~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..++|||+|||..+|+++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-19 Score=131.48 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=76.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345689999999999999999999999999999999998543 689999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98753
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=129.44 Aligned_cols=82 Identities=13% Similarity=0.291 Sum_probs=77.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+++++|+++|+.| .|..|.|+.+ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+++
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97754
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-19 Score=131.22 Aligned_cols=84 Identities=26% Similarity=0.459 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++.|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999 47899999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987644
No 66
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.2e-19 Score=144.96 Aligned_cols=86 Identities=21% Similarity=0.388 Sum_probs=80.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.|+.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987543
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.1e-19 Score=130.87 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 455789999999999999999999999999999999884 789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97653
No 68
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=1.3e-20 Score=158.52 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC--ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFG--KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..++|||+||++.+|+++|+++|+.|| .|..|.|+.++.|++++|||||+|.+.++|++||..||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 69
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=3.5e-20 Score=134.31 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=76.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+|+++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34458999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 70
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=139.02 Aligned_cols=82 Identities=33% Similarity=0.512 Sum_probs=77.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
..++.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 026078 135 IA 136 (244)
Q Consensus 135 ~a 136 (244)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=135.08 Aligned_cols=84 Identities=21% Similarity=0.449 Sum_probs=76.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999976 5999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97654
No 72
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-20 Score=140.70 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|.++|..||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999886666777789999999999999999999999 999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 73
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-19 Score=132.81 Aligned_cols=83 Identities=19% Similarity=0.441 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee--------C
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL--------N 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i--------~ 127 (244)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.++ ++.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEEEEEEccCC
Q 026078 128 GRTVNASIAADN 139 (244)
Q Consensus 128 gr~i~V~~a~~~ 139 (244)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999754
No 74
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=142.37 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=77.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEE--EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc----eeCCeE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK----VLNGRT 130 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~----~i~gr~ 130 (244)
.+.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.|++++|||||+|.+. +|.+||..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44689999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEEccCC
Q 026078 131 VNASIAADN 139 (244)
Q Consensus 131 i~V~~a~~~ 139 (244)
|.|.++.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=131.11 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=72.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC-----eEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-----RTV 131 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g-----r~i 131 (244)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||..||++.|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999875 799999999999999999999999999 999
Q ss_pred EEEEccCCC
Q 026078 132 NASIAADNG 140 (244)
Q Consensus 132 ~V~~a~~~~ 140 (244)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 76
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=136.15 Aligned_cols=82 Identities=20% Similarity=0.442 Sum_probs=75.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecC-CCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDR-ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~-~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
....++|||+|||+.+++++|+++|+.|| |..|.|+.++ .+++++|||||+|.+.++|.+|| .|||..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45569999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99765
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=134.06 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=79.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCc-eEEEEEe-ecCCCCCcccEEEEEeCChhHHHHHHHHhC--CceeCCeEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVL-KDRATRKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~i~i~-~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~--g~~i~gr~i 131 (244)
..+.++|||+|||+.+|+++|.++|..||. |..|.|+ .++.++.++|||||+|.+.++|..||..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 026078 132 NASIAADNGR 141 (244)
Q Consensus 132 ~V~~a~~~~~ 141 (244)
.|.|+.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=132.54 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-20 Score=135.50 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=76.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|.++|++||.|..|.|+.++. +.++|||||+|.+.++|..||. ++++.|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987 9999999999999999999999 999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=4.4e-19 Score=134.99 Aligned_cols=84 Identities=31% Similarity=0.547 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||..||+..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97654
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=129.03 Aligned_cols=81 Identities=28% Similarity=0.469 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|++||.| .|+.+ .++.++|||||+|.+.++|++||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456999999999999999999999999987 55665 5789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97753
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3.5e-19 Score=140.84 Aligned_cols=85 Identities=32% Similarity=0.558 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 97653
No 83
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=133.35 Aligned_cols=82 Identities=30% Similarity=0.569 Sum_probs=76.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||..+|+++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=133.82 Aligned_cols=84 Identities=31% Similarity=0.544 Sum_probs=79.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026078 138 DNGR 141 (244)
Q Consensus 138 ~~~~ 141 (244)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7543
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=133.80 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC--ceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g--~~i~gr~i~V 133 (244)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..|++ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456799999999999999999999999999999999864 68999999999999999998864 7899999999
Q ss_pred EEccCCCC
Q 026078 134 SIAADNGR 141 (244)
Q Consensus 134 ~~a~~~~~ 141 (244)
.|++++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99976543
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=3.2e-19 Score=135.62 Aligned_cols=81 Identities=36% Similarity=0.583 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..|| .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999989999999999999999999999 799999999999999997
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=133.49 Aligned_cols=84 Identities=26% Similarity=0.481 Sum_probs=77.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHH---HHhccCCceEEEEEeecCCCC---CcccEEEEEeCChhHHHHHHHHhCCceeCCeE
Q 026078 57 PSKSTVYVSNLDYALTNSDLH---TLFSTFGKIARVTVLKDRATR---KSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~i~i~~d~~tg---~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~ 130 (244)
...++|||+|||+.+++++|. ++|++||.|..|.|+.++.++ .++|||||+|.+.++|++||..||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999999887654 56699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 026078 131 VNASIAADNG 140 (244)
Q Consensus 131 i~V~~a~~~~ 140 (244)
|+|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998754
No 88
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=131.62 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|+++|+.||.| .|.|+.++ +++++|||||+|.+.++|++||. +|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999954 99999998 89999999999999999999995 899999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.+.
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=128.97 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..||++.|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999874 678888888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987543
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1e-19 Score=126.24 Aligned_cols=75 Identities=25% Similarity=0.439 Sum_probs=72.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+. ||+..|.|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 9999999999999985
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=127.14 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC--CeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN--GRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~--gr~i~V 133 (244)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||..||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 455689999999999999999999999999999998753 689999999999999999999999999 999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.|++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998754
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=134.02 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCce-EEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKI-ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
..+.++|||+|||+.+|+++|+++|+.||.| ..|.|+.++ +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 899999999999999999999996 9999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=126.31 Aligned_cols=76 Identities=22% Similarity=0.511 Sum_probs=73.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999999 9999999999987
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=131.07 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCCC------CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe-E
Q 026078 58 SKSTVYVSNLDYAL------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-T 130 (244)
Q Consensus 58 ~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr-~ 130 (244)
..++|||+|||+.+ |+++|.++|++||.|..|.|+ +.+|.++|||||+|.+.++|..||..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35899999999999 789999999999999999988 46799999999999999999999999999999998 9
Q ss_pred EEEEEccCC
Q 026078 131 VNASIAADN 139 (244)
Q Consensus 131 i~V~~a~~~ 139 (244)
|.|.++.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 95
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=127.92 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh--CCceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI--HGKVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l--~g~~i~gr~i~V 133 (244)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999988764 689999999999999999977 567899999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.|++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9997653
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6e-19 Score=125.85 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
....-|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|.+||+.||+..|.|+.|+|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3457899999999999999999999999999999865 6899999999999999999999999999999999998
Q ss_pred c
Q 026078 137 A 137 (244)
Q Consensus 137 ~ 137 (244)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=134.62 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+|+++|.++|..||.|..+.+..+..++.++|||||+|.+.++|..||..||+..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45679999999999999999999999999984332222222688999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98754
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.4e-19 Score=140.28 Aligned_cols=85 Identities=32% Similarity=0.558 Sum_probs=80.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|.|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+++..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=1.3e-18 Score=127.14 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 54 GLAPSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 54 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
...++.++|||+|||+ .+++++|.++|+.||.|..|.|. +|||||+|.+.++|.+||..|||..|.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999883 68999999999999999999999999999999
Q ss_pred EEEccCC
Q 026078 133 ASIAADN 139 (244)
Q Consensus 133 V~~a~~~ 139 (244)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999764
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=7.1e-19 Score=133.04 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCc---eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|.+||. ||++.|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999999 89999999986 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 101
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=127.56 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+..++|||+|||+.+|+++|+++|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44568999999999999999999999999997 66665 36789999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 102
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=129.57 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEE-EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...++|||+|||+.+|+++|+++|..||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999999999999999999999987 888888 7899999999999999999999996 99999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8653
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=124.94 Aligned_cols=78 Identities=19% Similarity=0.447 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|..||..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=6.7e-20 Score=131.59 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=74.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.+ |..|+..|||..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred CC
Q 026078 140 GR 141 (244)
Q Consensus 140 ~~ 141 (244)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=128.79 Aligned_cols=78 Identities=31% Similarity=0.513 Sum_probs=73.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+||..||+..|.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6789999999999999999999999999999999999876
Q ss_pred CCC
Q 026078 140 GRA 142 (244)
Q Consensus 140 ~~~ 142 (244)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 106
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.06 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce--eCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV--LNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~--i~gr~i~V 133 (244)
.+++.+|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..||..|++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45678999999999999999999999999999999875 46899999999999999999999864 78999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
+|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999754
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=134.76 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
.+++++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999865 7999999999988754 57899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 026078 132 NASIAADNG 140 (244)
Q Consensus 132 ~V~~a~~~~ 140 (244)
.|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 108
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=3.5e-18 Score=127.29 Aligned_cols=76 Identities=33% Similarity=0.603 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.+..++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|..||..||+..|.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 46899999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++.+.
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99753
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1e-18 Score=130.17 Aligned_cols=77 Identities=23% Similarity=0.481 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+ +|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4556999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97654
No 110
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=123.48 Aligned_cols=78 Identities=21% Similarity=0.434 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|++||.|..|.|+. +||||+|.+.++|.+||..||++.|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 977543
No 111
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=129.83 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC--ceeCCeEEEE
Q 026078 57 PSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g--~~i~gr~i~V 133 (244)
.+.++|||+|||+ .+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..||+ ..|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 9999999999999999999999865 47999999999999999999886 4599999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
.+|+..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 112
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=133.17 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34689999999999999999999999999887 666777788999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 113
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=4.8e-18 Score=125.06 Aligned_cols=77 Identities=31% Similarity=0.492 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 346899999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.+...
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87644
No 114
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=130.33 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|.+|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999975 999999999999999999999 59999999999999988
Q ss_pred cC
Q 026078 137 AD 138 (244)
Q Consensus 137 ~~ 138 (244)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 115
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=128.40 Aligned_cols=80 Identities=25% Similarity=0.509 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+..++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|..||..||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 455789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987543
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=131.20 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC--ceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g--~~i~gr~i~V 133 (244)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456799999999999999999999999999999999875 68999999999999999998874 6899999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.|++.+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9997654
No 117
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=129.89 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=74.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+|+++|.++|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455789999999999999999999999999999999875 55689999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9753
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=7.2e-19 Score=136.44 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCc---eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
....++|||+|||+.+|+++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|.+||. ||+..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 455789999999999999999999999999 88999999987 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 026078 133 ASIAAD 138 (244)
Q Consensus 133 V~~a~~ 138 (244)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999854
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=125.38 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999999753 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97653
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.1e-18 Score=130.79 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
++..++|||+|||+.+++++|+++|+.|| .|..+.|.. ..++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45568999999999999999999999999 899998854 3478999999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=121.45 Aligned_cols=76 Identities=33% Similarity=0.496 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh-CCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l-~g~~i~gr~i~V~ 134 (244)
.++.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345689999999999999999999999999999999863 689999999999999999999 9999999999999
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=1.1e-18 Score=126.78 Aligned_cols=82 Identities=27% Similarity=0.520 Sum_probs=75.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
.++.++|||+|||+.+++++|. ++|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999998874 47788999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 026078 132 NASIAADNG 140 (244)
Q Consensus 132 ~V~~a~~~~ 140 (244)
.|.|+.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=128.63 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC--CceeCCeEEE
Q 026078 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH--GKVLNGRTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~--g~~i~gr~i~ 132 (244)
.++.++|||+|||+. +|+++|+++|++||.|..|.|+. .+|||||+|.+.++|..||..|| +..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456799999999998 99999999999999999999964 47899999999999999999886 4569999999
Q ss_pred EEEccCCC
Q 026078 133 ASIAADNG 140 (244)
Q Consensus 133 V~~a~~~~ 140 (244)
|.|++.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997643
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=126.99 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC--ceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG--KVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g--~~i~gr~i~V 133 (244)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998753 68999999999999999998865 4589999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.|+..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9997643
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.4e-18 Score=127.27 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
.+..++|||+|||..+++++|+++|+.||.|..|.|+ .++|||||+|.+.++|..||..|||..|.|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999987 3578999999999999999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=6.1e-18 Score=136.86 Aligned_cols=84 Identities=31% Similarity=0.548 Sum_probs=79.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
||...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=122.25 Aligned_cols=76 Identities=25% Similarity=0.480 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+. +||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9765
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=125.98 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 23688999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 977543
No 129
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=121.61 Aligned_cols=77 Identities=30% Similarity=0.519 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC--CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTF--GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.++.++|||+|||+.+|+++|+++|++| |.|..|.+. +|||||+|.+.++|..||..||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999998874 569999999999999999999999999999999
Q ss_pred EEccCCC
Q 026078 134 SIAADNG 140 (244)
Q Consensus 134 ~~a~~~~ 140 (244)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998754
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.1e-18 Score=141.21 Aligned_cols=83 Identities=29% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|..||..||+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=6e-19 Score=124.31 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe-EE
Q 026078 59 KSTVYVSNLDYAL------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR-TV 131 (244)
Q Consensus 59 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr-~i 131 (244)
+++|||+|||+.+ |+++|.++|++||.|..|.|+ +.+|+++|||||+|.+.++|..||..|||..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 45789999999999999999999999999999999 88
Q ss_pred EE
Q 026078 132 NA 133 (244)
Q Consensus 132 ~V 133 (244)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-20 Score=139.07 Aligned_cols=86 Identities=26% Similarity=0.408 Sum_probs=80.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEE--------EEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIAR--------VTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
.++.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 026078 128 GRTVNASIAADNGR 141 (244)
Q Consensus 128 gr~i~V~~a~~~~~ 141 (244)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987543
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-19 Score=131.22 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCc---eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGK---IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
....++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999998 89999999987 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 026078 133 ASIAAD 138 (244)
Q Consensus 133 V~~a~~ 138 (244)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999865
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-18 Score=125.59 Aligned_cols=78 Identities=24% Similarity=0.469 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.++.++|||+|||+ .+++++|.++|++||.|..|.|. +|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45679999999999 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred EccCCCC
Q 026078 135 IAADNGR 141 (244)
Q Consensus 135 ~a~~~~~ 141 (244)
++.+...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987544
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=5.1e-19 Score=122.55 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=71.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++..|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 5899999999999885
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=123.40 Aligned_cols=77 Identities=25% Similarity=0.409 Sum_probs=68.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCc-eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCC-ceeCCeEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGK-IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHG-KVLNGRTVNAS 134 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g-~~i~gr~i~V~ 134 (244)
.+.++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||..||+ ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555553 468999999999999999999999 99999999999
Q ss_pred EccCCC
Q 026078 135 IAADNG 140 (244)
Q Consensus 135 ~a~~~~ 140 (244)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997653
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=2.5e-18 Score=126.23 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=76.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+++++|.++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 89999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=7.2e-18 Score=132.35 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|.|+.|+|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9765
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.7e-17 Score=130.80 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.6e-17 Score=129.58 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||..+|+++|.++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=128.38 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 5689999999999999999999999999999999999
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 142
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=5.9e-17 Score=131.57 Aligned_cols=86 Identities=23% Similarity=0.404 Sum_probs=81.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 143
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-17 Score=117.97 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 89999999999999999999984 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q 026078 137 ADNGR 141 (244)
Q Consensus 137 ~~~~~ 141 (244)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77543
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=121.56 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEE-EEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV-TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...++|||+|||+.+++++|+++|+.||.|..| .|+.++.++ .|||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345899999999999999999999999999999 588876544 499999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9876
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=134.75 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEE--------EEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARV--------TVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i--------~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
..+.++|||+|||+.+|+++|..+|+.||.|..+ .+. .++.++|||||+|.+.++|..||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3456899999999999999999999999998763 333 36889999999999999999999999999999
Q ss_pred CeEEEEEEccCC
Q 026078 128 GRTVNASIAADN 139 (244)
Q Consensus 128 gr~i~V~~a~~~ 139 (244)
|+.|.|.++++.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999764
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=119.91 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+|||+.+|+++|+++|+.||.|..| +.++.++. ||||+|.+.++|.+||. ||++.|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 56666665 99999999999999999 99999999999999886
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
++
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.4e-17 Score=131.70 Aligned_cols=83 Identities=27% Similarity=0.445 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 148
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=127.28 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=72.2
Q ss_pred CEEEEeCC----CCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCC----hhH----HHHHHH--HhCCce
Q 026078 60 STVYVSNL----DYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ----IPD----ALSAAR--AIHGKV 125 (244)
Q Consensus 60 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~----~~~----A~~Ai~--~l~g~~ 125 (244)
+.|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEEccC
Q 026078 126 LNGRTVNASIAAD 138 (244)
Q Consensus 126 i~gr~i~V~~a~~ 138 (244)
|+|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999654
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.1e-18 Score=135.83 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|+++|++|| |..|.|+.++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999976 999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87643
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=6.4e-18 Score=129.34 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceE--EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIA--RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
....++|||+|||+.+|+++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456899999999999999999999999 666 899999987 9999999999999999999999 5789999999999
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=8.8e-18 Score=126.39 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE-----E
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT-----V 131 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~-----i 131 (244)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||..||++.|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999765 79999999999999999999999999988 6
Q ss_pred EEEEccC
Q 026078 132 NASIAAD 138 (244)
Q Consensus 132 ~V~~a~~ 138 (244)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6666544
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=119.38 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCCCCHHH----HHHHhccC-CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 59 KSTVYVSNLDYALTNSD----LHTLFSTF-GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~----L~~~F~~~-G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.+.|||+|||+.+++++ |.++|++| |.|..| |+ |+|||.|.+.++|.+|++.|||..|.|++|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999987 56899999 599988 34 89999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 026078 134 SIAADNGRA 142 (244)
Q Consensus 134 ~~a~~~~~~ 142 (244)
.+|+.+...
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876543
No 153
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-18 Score=129.34 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCce----EEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKI----ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVN 132 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~ 132 (244)
...++|||+|||+.+|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |++.|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999975 689999984 899999999999999999999995 99999999999
Q ss_pred EEEccC
Q 026078 133 ASIAAD 138 (244)
Q Consensus 133 V~~a~~ 138 (244)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=2.4e-17 Score=117.92 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
..++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|..||..|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45889999999999999999999999 99999884 578999999999999999999999999999999999985
Q ss_pred C
Q 026078 138 D 138 (244)
Q Consensus 138 ~ 138 (244)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.5e-17 Score=132.70 Aligned_cols=86 Identities=20% Similarity=0.359 Sum_probs=76.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4458999999999999999999999999999999999998999999999999999999999985 899999999999999
Q ss_pred cCCCCCc
Q 026078 137 ADNGRAS 143 (244)
Q Consensus 137 ~~~~~~~ 143 (244)
.++....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 8765443
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=4.3e-17 Score=134.14 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=79.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||..+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34589999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
.+.+
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=5.2e-17 Score=129.02 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=76.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3689999999999999999999999999999999999889999999999999999999999999999999999999997
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2e-16 Score=120.58 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccE-EEEEeCChhHHHHHHHHhCCceeCC--eEEEEEEcc
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV-AFIQFVQIPDALSAARAIHGKVLNG--RTVNASIAA 137 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~-aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~V~~a~ 137 (244)
.|||+||++.+|+++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999998652 276 9999999999999999999999987 689999998
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=5.6e-17 Score=131.47 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=102.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999985 89999999999999
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCccCCCCCCCCCCCCCCCCCcccccc
Q 026078 136 AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRN-------QLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208 (244)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~ 208 (244)
+......... .......+...+++++.+... .+|....-. .-.. ...+...|++-+..
T Consensus 89 ~~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-----i~~~---~~~g~~~g~afV~F 153 (196)
T 1l3k_A 89 AVSREDSQRP-------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE-----IMTD---RGSGKKRGFAFVTF 153 (196)
T ss_dssp CCC------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEE-----EEEC---TTTCCEEEEEEEEE
T ss_pred ccCccccccc-------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEE-----Eeec---CCCCCccceEEEEE
Confidence 8765332210 001111234566776665532 222211000 0000 01122356777887
Q ss_pred CchHHHHhhhcc
Q 026078 209 GGAEERLLLMGE 220 (244)
Q Consensus 209 ~~~~~~~~~~~~ 220 (244)
...+...++...
T Consensus 154 ~~~~~A~~A~~~ 165 (196)
T 1l3k_A 154 DDHDSVDKIVIQ 165 (196)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 777777766643
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=6.7e-17 Score=116.14 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=63.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce--eCCeEEE
Q 026078 55 LAPSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV--LNGRTVN 132 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~--i~gr~i~ 132 (244)
..++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3566799999999999999999999999999999999874 78999999999999883 45544 5699999
Q ss_pred EEEccCCC
Q 026078 133 ASIAADNG 140 (244)
Q Consensus 133 V~~a~~~~ 140 (244)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997653
No 161
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=122.63 Aligned_cols=78 Identities=12% Similarity=0.209 Sum_probs=70.1
Q ss_pred CCCCEEEE--eCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee-----CCe
Q 026078 57 PSKSTVYV--SNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL-----NGR 129 (244)
Q Consensus 57 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i-----~gr 129 (244)
.+..+||| +||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 77999999999999999999999998864 368999999999999999999999998 689
Q ss_pred EEEEEEccCCC
Q 026078 130 TVNASIAADNG 140 (244)
Q Consensus 130 ~i~V~~a~~~~ 140 (244)
+|.|.|+...+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999997654
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=2.4e-17 Score=130.34 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999998899999999999999999999998 89999999999999997
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1.3e-16 Score=122.50 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccE-EEEEeCChhHHHHHHHHhCCceeCC--eEEEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGV-AFIQFVQIPDALSAARAIHGKVLNG--RTVNASI 135 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~-aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~V~~ 135 (244)
-..|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 357889999999999999999999999999988764 3577 9999999999999999999999988 8999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9865
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=9.5e-17 Score=127.70 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC--eEEEEEEc
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNASIA 136 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~V~~a 136 (244)
..+|||+||++.+|+++|+++|++||.|..|.|... ..+|||||+|.+.++|..|+..|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 467999999999999999999999999999998753 257899999999999999999999999965 99999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8753
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=1.3e-16 Score=131.82 Aligned_cols=78 Identities=15% Similarity=0.342 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCC-CCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLD-YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
+++++|||+||| +.+|+++|.++|++||.|..|.|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 457899999999 89999999999999999999999865 379999999999999999999999999999999999
Q ss_pred ccCC
Q 026078 136 AADN 139 (244)
Q Consensus 136 a~~~ 139 (244)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.1e-16 Score=132.69 Aligned_cols=79 Identities=29% Similarity=0.457 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+|+++|.++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999885 45799999999999999999999999999999999999976
Q ss_pred C
Q 026078 139 N 139 (244)
Q Consensus 139 ~ 139 (244)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=120.20 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=69.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCC---CCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRAT---RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~t---g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
...++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3458999999999999999999999999999 888888777 7999999999999999999999884 478888877
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 76543
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.5e-16 Score=124.41 Aligned_cols=80 Identities=29% Similarity=0.590 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC--eEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG--RTVNAS 134 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g--r~i~V~ 134 (244)
.+.++|||+|||..+++++|.++|+.||.|..+.|+.+..++.++|||||+|.+.++|.+|+..|||..|.| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346899999999999999999999999999999999998889999999999999999999999999999988 999999
Q ss_pred Ec
Q 026078 135 IA 136 (244)
Q Consensus 135 ~a 136 (244)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.4e-16 Score=131.09 Aligned_cols=83 Identities=27% Similarity=0.454 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.5e-16 Score=113.03 Aligned_cols=72 Identities=22% Similarity=0.504 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC----C-------ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
.+.++|||+|||+.+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|| .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998754 689999999999999999 899999
Q ss_pred eCCeEEEEEE
Q 026078 126 LNGRTVNASI 135 (244)
Q Consensus 126 i~gr~i~V~~ 135 (244)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.8e-16 Score=123.64 Aligned_cols=80 Identities=30% Similarity=0.444 Sum_probs=74.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADN 139 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~ 139 (244)
++|||+|||..+|+++|.++|+.||.|..|.|+.++. ++++|||||+|.+.++|..|+..||+..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999999874 779999999999999999999999999999999999998765
Q ss_pred C
Q 026078 140 G 140 (244)
Q Consensus 140 ~ 140 (244)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.4e-16 Score=119.74 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999885 4678999999999999999999999999999999999
Q ss_pred ccCCC
Q 026078 136 AADNG 140 (244)
Q Consensus 136 a~~~~ 140 (244)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98654
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=6.9e-16 Score=114.35 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCCC-----CCCHHHHHHHhccCCceEEEEEeecCCC-CCcccEEEEEeCChhHHHHHHHHhCCceeCCeE
Q 026078 57 PSKSTVYVSNLDY-----ALTNSDLHTLFSTFGKIARVTVLKDRAT-RKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT 130 (244)
Q Consensus 57 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~i~i~~d~~t-g~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~ 130 (244)
.+.++|+|.||.. .-++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEEccC
Q 026078 131 VNASIAAD 138 (244)
Q Consensus 131 i~V~~a~~ 138 (244)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=114.01 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=65.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34689999999999999999999999999999999764 689999999999999765331 34569999999999
Q ss_pred cCCC
Q 026078 137 ADNG 140 (244)
Q Consensus 137 ~~~~ 140 (244)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.5e-16 Score=123.20 Aligned_cols=79 Identities=34% Similarity=0.574 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeE--EEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRT--VNASI 135 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~--i~V~~ 135 (244)
..++|||+|||..+++++|.++|++||.|..+.|+.+..++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999999889999999999999999999999999999999975 88887
Q ss_pred c
Q 026078 136 A 136 (244)
Q Consensus 136 a 136 (244)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=5e-16 Score=123.35 Aligned_cols=82 Identities=24% Similarity=0.468 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCC--CcccEEEEEeCChhHHHHHHHHhCCceeC---CeEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATR--KSRGVAFIQFVQIPDALSAARAIHGKVLN---GRTVN 132 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg--~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~---gr~i~ 132 (244)
..++|||+|||+.+|+++|.++|++||.|..|.|+.++.++ .++|||||+|.+.++|..|+..||+..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45899999999999999999999999999999999998877 89999999999999999999999998775 67788
Q ss_pred EEEccCC
Q 026078 133 ASIAADN 139 (244)
Q Consensus 133 V~~a~~~ 139 (244)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887654
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.9e-16 Score=124.05 Aligned_cols=80 Identities=21% Similarity=0.526 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++.|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 458999999999999999999999999999999999999999999999999999999999994 678999999999986
Q ss_pred CC
Q 026078 138 DN 139 (244)
Q Consensus 138 ~~ 139 (244)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=7.3e-16 Score=122.91 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
...++|||+|||+.+|+++|.++|+.||.|..+ ..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999988766 457889999999999999999999999999999999999999
Q ss_pred cCC
Q 026078 137 ADN 139 (244)
Q Consensus 137 ~~~ 139 (244)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.4e-16 Score=122.73 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC---CeEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN---GRTVNA 133 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~---gr~i~V 133 (244)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999986 5899999999999999999999999998775 499999
Q ss_pred EEcc
Q 026078 134 SIAA 137 (244)
Q Consensus 134 ~~a~ 137 (244)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9.6e-16 Score=131.58 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLH----TLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
..+.++|||+|||+.+|+++|+ ++|+.||.|..|.|+. +++++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567999999999999999966 8999999999999876 68899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 026078 132 NASIAADNG 140 (244)
Q Consensus 132 ~V~~a~~~~ 140 (244)
+|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1e-15 Score=125.35 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAAD 138 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~ 138 (244)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..+ +..|.|+.|.|.++.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999986 4889999999999999999999855 5699999999999765
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=2.6e-15 Score=128.86 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~i~V~ 134 (244)
.++.++|||+|||..+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+||..|||..|. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4567899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=8.2e-16 Score=132.65 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=76.6
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCC-CCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 56 APSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRA-TRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~-tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
..+.++|||+|||+. +|+++|.++|+.||.|..|.|+.+.. |+.++|||||+|.+.++|.+|| .|||..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999876 6999999999999999999999 99999999999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
.|+.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=7.4e-16 Score=129.97 Aligned_cols=80 Identities=26% Similarity=0.428 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 56 APSKSTVYVSNLDYAL---------TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
....++|||+||+..+ ++++|..+|++||.|..|.|+. .+|||||+|.+.++|+.|+.+|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 7999999999999999999985 478999999999999999999999999
Q ss_pred ------------CCeEEEEEEccCCCC
Q 026078 127 ------------NGRTVNASIAADNGR 141 (244)
Q Consensus 127 ------------~gr~i~V~~a~~~~~ 141 (244)
.|+.|.|.||+..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=3.3e-15 Score=128.37 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=106.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
+..++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCCCCC-CC-------CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccccc
Q 026078 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYE-CP-------RNQLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~-~~-------~~~~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~ 208 (244)
.+...... .....+...++++.. +. ...+|....-.-... ..+...|++-+..
T Consensus 173 ~~~~~~~~----------~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~---------~~g~~~g~afV~f 233 (284)
T 3smz_A 173 DAGQLTPA----------LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG---------QDGQLKGFAVLEY 233 (284)
T ss_dssp CGGGCCTT----------TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC---------SSCCEEEEEEEEC
T ss_pred CCCCCCcc----------cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC---------CCCCcccEEEEEe
Confidence 76432221 112233556677766 33 123332211100000 0122357788887
Q ss_pred CchHHHHhhhcc
Q 026078 209 GGAEERLLLMGE 220 (244)
Q Consensus 209 ~~~~~~~~~~~~ 220 (244)
...+...++...
T Consensus 234 ~~~~~A~~A~~~ 245 (284)
T 3smz_A 234 ETAEMAEEAQQQ 245 (284)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777776654
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.5e-15 Score=127.13 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 56 APSKSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 56 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
.++.++|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999998874 6899999999999999999999999999999999
Q ss_pred EccCC
Q 026078 135 IAADN 139 (244)
Q Consensus 135 ~a~~~ 139 (244)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99765
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4.6e-15 Score=127.42 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCCC-CHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 57 PSKSTVYVSNLDYAL-TNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
...++|||+|||+.+ ++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999999986 689999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026078 136 AADNGR 141 (244)
Q Consensus 136 a~~~~~ 141 (244)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987654
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=108.83 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCCCCCC-----------HHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCc
Q 026078 56 APSKSTVYVSNLDYALT-----------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGK 124 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~ 124 (244)
+.+.++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 44578999999954432 5799999999999999966 553 37899999999999999999999999
Q ss_pred eeCCeEEEEEEccCCC
Q 026078 125 VLNGRTVNASIAADNG 140 (244)
Q Consensus 125 ~i~gr~i~V~~a~~~~ 140 (244)
.|.|+.|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997653
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=6e-16 Score=123.40 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=98.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
..+.++|||+|||+.+|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456799999999999999999999999998766 334444568899999999999999999995 999999999999999
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCccCCCCCCCCCCCCCCCCCcccccc
Q 026078 136 AADNGRASSFIKKRVYKDKSRCYECGDEGHLSYECPRN-------QLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208 (244)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~ 208 (244)
+.+...... ....+...+++++..... .++.-... .......|++.+..
T Consensus 88 ~~~~~~~~~-----------~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-------------~~~~~~~g~afV~f 143 (175)
T 1fje_B 88 PKGRDSKKV-----------RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-------------SQDGKSKGIAYIEF 143 (175)
T ss_dssp CCCSSCSTT-----------GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-------------CSSSSCCSEEEEEC
T ss_pred CCCcccccc-----------ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-------------cCCCCCceEEEEEE
Confidence 976533221 112234556666655421 12111000 01123467788887
Q ss_pred CchHHHHhhhcc
Q 026078 209 GGAEERLLLMGE 220 (244)
Q Consensus 209 ~~~~~~~~~~~~ 220 (244)
...+...++...
T Consensus 144 ~~~~~A~~A~~~ 155 (175)
T 1fje_B 144 KSEADAEKNLEE 155 (175)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777776654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=3e-15 Score=121.84 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=72.1
Q ss_pred CCEEEEeCCCC-CCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 59 KSTVYVSNLDY-ALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 59 ~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
+++|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 6899999999999999999999999999999999997
Q ss_pred CCC
Q 026078 138 DNG 140 (244)
Q Consensus 138 ~~~ 140 (244)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=4.4e-15 Score=122.67 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCce--EEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCe----
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKI--ARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGR---- 129 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr---- 129 (244)
.++.++|||+|||+.+|+++|+++|+.||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 4567899999999999999999999999999 899988774 55679999999999999999999999999886
Q ss_pred EEEEEEc
Q 026078 130 TVNASIA 136 (244)
Q Consensus 130 ~i~V~~a 136 (244)
+|.|+|+
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5777775
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1.4e-14 Score=123.56 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASI 135 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~ 135 (244)
....++|||+|||+.+|+++|.++|+.||.|..|.|.. .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999964 468999999999999999999999999999999999
Q ss_pred ccC
Q 026078 136 AAD 138 (244)
Q Consensus 136 a~~ 138 (244)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=2e-14 Score=116.96 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~i~V 133 (244)
.++.++|||+|||..+++++|.++|+.|| .|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999999764 3689999999999999999999999999 999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
.|+++.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998753
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=2.1e-14 Score=106.33 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHhccCCceEEEEEeecCCC--CCcccEEEEEeCChhHHHHHHHHhCCc
Q 026078 57 PSKSTVYVSNL--DYALT--------NSDLHTLFSTFGKIARVTVLKDRAT--RKSRGVAFIQFVQIPDALSAARAIHGK 124 (244)
Q Consensus 57 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~i~i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~l~g~ 124 (244)
.+.+.|+|.|| |..+. +++|++.|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35688999998 33443 3689999999999999999988754 368999999999999999999999999
Q ss_pred eeCCeEEEEEEccC
Q 026078 125 VLNGRTVNASIAAD 138 (244)
Q Consensus 125 ~i~gr~i~V~~a~~ 138 (244)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999743
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.8e-14 Score=120.48 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC-CeEEEE
Q 026078 56 APSKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN-GRTVNA 133 (244)
Q Consensus 56 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~-gr~i~V 133 (244)
.++.++|||+|||..+++++|+++|+.|| .|..|.|+.+ .+|||||+|.+.++|.+||..|||..|. |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45679999999999999999999999999 9999999653 3689999999999999999999999999 999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
.|+++.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999753
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.4e-14 Score=121.14 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=73.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC-CceeC---CeEEEE
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH-GKVLN---GRTVNA 133 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~-g~~i~---gr~i~V 133 (244)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999999994 45554 999999
Q ss_pred EEccCC
Q 026078 134 SIAADN 139 (244)
Q Consensus 134 ~~a~~~ 139 (244)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998753
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2.1e-14 Score=123.75 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC-ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEc
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFG-KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIA 136 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a 136 (244)
..++|||+|||+.+++++|.++|..|| .|..|.|+.++. +.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998875 788999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCCCCC-CCCC-------CCCCCCCCCCccCCCCCCCCCCCCCCCCCcccccc
Q 026078 137 ADNGRASSFIKKRVYKDKSRCYECGDEGHLSYE-CPRN-------QLGPRERPMPKKLRRRSDGEDESEFDDGGWASVVD 208 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~-~~~~-------~~~~~~~~~~~~~~~r~~~~~~s~~~~~~~~~~~~ 208 (244)
.+....... ........+...+++++. +... .+|....- ..-.... ..+...|++.+..
T Consensus 195 ~~~~~~~~~------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v-----~i~~~~~--~tg~~~g~afV~F 261 (292)
T 2ghp_A 195 NPLEKSKRT------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI-----NIPAGQK--EHSFNNCCAFMVF 261 (292)
T ss_dssp CCC---------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE-----ECCSCCC-----CCCEEEEEEE
T ss_pred CCCcccccc------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE-----EEEecCC--cCCCCceEEEEEe
Confidence 865433211 001112223455666665 4321 12211100 0000000 0133467888888
Q ss_pred CchHHHHhhh
Q 026078 209 GGAEERLLLM 218 (244)
Q Consensus 209 ~~~~~~~~~~ 218 (244)
...+...++.
T Consensus 262 ~~~~~A~~A~ 271 (292)
T 2ghp_A 262 ENKDSAERAL 271 (292)
T ss_dssp SSHHHHHHHG
T ss_pred CCHHHHHHHH
Confidence 8888777776
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=6e-15 Score=109.05 Aligned_cols=72 Identities=17% Similarity=0.410 Sum_probs=64.3
Q ss_pred EeCCCCCCCHHHHHHHh------------ccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEE
Q 026078 64 VSNLDYALTNSDLHTLF------------STFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTV 131 (244)
Q Consensus 64 V~nLp~~~te~~L~~~F------------~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i 131 (244)
+.||++.+++++|.++| ++||.|..|.|+.+.. ++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 9999999999998764 7899999999999999999999999999999999
Q ss_pred EEEEc
Q 026078 132 NASIA 136 (244)
Q Consensus 132 ~V~~a 136 (244)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=3.4e-14 Score=115.11 Aligned_cols=75 Identities=20% Similarity=0.484 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC----C-------ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
..++|||+|||+.+|+++|.++|+.| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35899999999999999999999999 5 5666655 446899999999999999999 7999999
Q ss_pred CCeEEEEEEccCC
Q 026078 127 NGRTVNASIAADN 139 (244)
Q Consensus 127 ~gr~i~V~~a~~~ 139 (244)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998765
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3e-14 Score=112.89 Aligned_cols=75 Identities=21% Similarity=0.485 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC----C-------ceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTF----G-------KIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
+.++|||+|||+.+|+++|.++|+.| | .|..+.+. .++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45899999999999999999999999 6 67777664 35789999999999999999 7999999
Q ss_pred CCeEEEEEEccCC
Q 026078 127 NGRTVNASIAADN 139 (244)
Q Consensus 127 ~gr~i~V~~a~~~ 139 (244)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999997654
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.1e-14 Score=106.91 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHhccCCceEEEEEeecCC----CCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 57 PSKSTVYVSNLDY--AL---TNSDLHTLFSTFGKIARVTVLKDRA----TRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 57 ~~~~~lfV~nLp~--~~---te~~L~~~F~~~G~i~~i~i~~d~~----tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
++.++|+|.||-. .+ .+++|++.|++||.|..|.|+.++. ++.++||+||+|.+.++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3568999999942 22 3688999999999999999998864 4567899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 026078 128 GRTVNASIAA 137 (244)
Q Consensus 128 gr~i~V~~a~ 137 (244)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999974
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.6e-13 Score=96.99 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 026078 69 YALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAADNGR 141 (244)
Q Consensus 69 ~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~~~~~ 141 (244)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.++.|+|.|+.+.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999987 36789999999999999999997554 6799999999987643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=4.8e-13 Score=118.36 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=66.2
Q ss_pred CCCCCEEEEeC--CCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee---CCe-
Q 026078 56 APSKSTVYVSN--LDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL---NGR- 129 (244)
Q Consensus 56 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i---~gr- 129 (244)
..+..+|||+| |++.+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++||+.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56678999999 578999999999999999999987743 478999999999999999999999987 245
Q ss_pred -EEEEEEcc
Q 026078 130 -TVNASIAA 137 (244)
Q Consensus 130 -~i~V~~a~ 137 (244)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.3e-12 Score=95.77 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=65.6
Q ss_pred CCCCEEEEeCCCCCCC----------HHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCcee
Q 026078 57 PSKSTVYVSNLDYALT----------NSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVL 126 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i 126 (244)
.+.+.|.|.||=.... +++|++.|++||.|..|.|..+. .+||+||+|.+.++|.+|+..|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3457788888843221 35789999999999999986652 589999999999999999999999999
Q ss_pred CCeEEEEEEccC
Q 026078 127 NGRTVNASIAAD 138 (244)
Q Consensus 127 ~gr~i~V~~a~~ 138 (244)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.5e-11 Score=92.88 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCCCCEEEEeCCCCC-CCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCC-hhHHHHHHHHhC--CceeCCeE
Q 026078 55 LAPSKSTVYVSNLDYA-LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQ-IPDALSAARAIH--GKVLNGRT 130 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~-~~~A~~Ai~~l~--g~~i~gr~ 130 (244)
..++++.|||+||++. ++.++|+++|+.||.|..|.++.+.. .|||.|.+ ..+|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3577899999999999 99999999999999999999988754 69999999 899999999995 67899998
Q ss_pred EEEEEcc
Q 026078 131 VNASIAA 137 (244)
Q Consensus 131 i~V~~a~ 137 (244)
+++++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9988754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-11 Score=87.26 Aligned_cols=75 Identities=24% Similarity=0.417 Sum_probs=64.3
Q ss_pred CCCCCEEEEeCCCC----CCCH----HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeC
Q 026078 56 APSKSTVYVSNLDY----ALTN----SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLN 127 (244)
Q Consensus 56 ~~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~ 127 (244)
.|+..||+|.-++. ..-. .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||. |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 56778999987762 2323 568999999999999999886 38999999999999999 9999999
Q ss_pred CeEEEEEEccCC
Q 026078 128 GRTVNASIAADN 139 (244)
Q Consensus 128 gr~i~V~~a~~~ 139 (244)
|+.|+|+++.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998753
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.8e-10 Score=80.80 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=62.9
Q ss_pred CCCCCCEEEEeCCCCC------CCH---HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 55 LAPSKSTVYVSNLDYA------LTN---SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 55 ~~~~~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
..|+..||+|.-++.. ..+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3577789999988743 232 4588999999999999998873 9999999999999999 99999
Q ss_pred eCCeEEEEEEc
Q 026078 126 LNGRTVNASIA 136 (244)
Q Consensus 126 i~gr~i~V~~a 136 (244)
|+|+.|+|++.
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999985
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=2.1e-09 Score=89.04 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=59.8
Q ss_pred CHHHHHHHhccCCceEEEEEeecC----CCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEEEcc
Q 026078 72 TNSDLHTLFSTFGKIARVTVLKDR----ATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNASIAA 137 (244)
Q Consensus 72 te~~L~~~F~~~G~i~~i~i~~d~----~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~~a~ 137 (244)
.+++|.+.|++||.|..|.|+.+. .++.++|++||+|.+.++|.+||..|||..|.|+.|.|.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999999999998553 455899999999999999999999999999999999999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=7e-07 Score=65.31 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-----CceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTF-----GKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.++|-+-|||..++...|..++..+ |.|..|.+..|. +-|+|+|.+...|-+|.-+|+|..|.|+.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 5789999999999999999999999 999999998874 47999999999999999999999999999998
Q ss_pred EE
Q 026078 134 SI 135 (244)
Q Consensus 134 ~~ 135 (244)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00013 Score=52.91 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCEEEEeCCCCCC-CH----HHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 59 KSTVYVSNLDYAL-TN----SDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~-te----~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
.++|+|.||+..+ +. ..++.+|..|+++....+++.- .-..|.|.+.++|.+|-..||+..+.|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3789999998866 32 4678999999998887776542 24689999999999999999999999999999
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.67 E-value=0.00059 Score=48.43 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCC--cccEEEEEeCChhHHHHHHHHhCCceeC---Ce--EEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK--SRGVAFIQFVQIPDALSAARAIHGKVLN---GR--TVN 132 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~--~rg~aFV~f~~~~~A~~Ai~~l~g~~i~---gr--~i~ 132 (244)
++|.|.+||+.+|++++.+.+..+..+.....+..+.+.+ .-.-|||.|.+.+++......++|+.+. |. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999988877666665544332 3356999999999999999999999873 22 245
Q ss_pred EEEc
Q 026078 133 ASIA 136 (244)
Q Consensus 133 V~~a 136 (244)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00066 Score=49.05 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-----CCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFST-----FGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNA 133 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V 133 (244)
..+|.|.|||..+.++.|.-+|+. -|.|..|.... +-|+|+|.+...|++.|+ -..+.|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 578999999999999999999987 25788877643 479999999999999988 3368899999999
Q ss_pred EEccC
Q 026078 134 SIAAD 138 (244)
Q Consensus 134 ~~a~~ 138 (244)
....+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 77543
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.0005 Score=49.13 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=46.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 121 (244)
.+.++| ++|..+...||.++|+.||.| .|.++.|- -|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 466777 999999999999999999954 57777763 7999999999999999876
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.34 E-value=0.00049 Score=49.34 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=46.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~ 122 (244)
+.++| ++|..+...||.++|+.|| -..|.++-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 55666 9999999999999999999 4467777763 79999999999999999764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0016 Score=48.33 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=58.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCC-eEEEEEE
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNG-RTVNASI 135 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g-r~i~V~~ 135 (244)
...+-|.|-++|... ...|...|++||.|+...... ...+-.|.|.+..+|++||. .||..|.| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 345789999999986 456788999999999887621 23499999999999999999 79999985 6677776
Q ss_pred cc
Q 026078 136 AA 137 (244)
Q Consensus 136 a~ 137 (244)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.89 E-value=0.0027 Score=45.44 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCC--cccEEEEEeCChhHHHHHHHHhCCceeCC-----eEE
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRK--SRGVAFIQFVQIPDALSAARAIHGKVLNG-----RTV 131 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~--~rg~aFV~f~~~~~A~~Ai~~l~g~~i~g-----r~i 131 (244)
.-+|.|..||+.+|++++.+.+...-.+.....+..+.+.+ .-.-|||.|.+.+++....+.++|+.+.+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999887776654433222222222211 22458999999999999999999998732 235
Q ss_pred EEEEc
Q 026078 132 NASIA 136 (244)
Q Consensus 132 ~V~~a 136 (244)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56666
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.69 E-value=0.00095 Score=51.50 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=29.0
Q ss_pred EEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 88 RVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 88 ~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
.+.|+.+. ..++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 35666664 3689999999999999999998887643
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.53 E-value=0.0025 Score=48.05 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=55.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCceEE-EEEeec--------CCCC-----CcccEEEEEeCChhHHHHHHHHhCC
Q 026078 58 SKSTVYVSNLDYALTNSDLHTLFSTFGKIAR-VTVLKD--------RATR-----KSRGVAFIQFVQIPDALSAARAIHG 123 (244)
Q Consensus 58 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-i~i~~d--------~~tg-----~~rg~aFV~f~~~~~A~~Ai~~l~g 123 (244)
..+.|.|-+.|...+. .+.+.|++||.|+. +.+... +.+. ....+..|.|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3467888899887654 46778999999876 211110 0000 024578999999999999999 799
Q ss_pred ceeCCeEEEEEEcc
Q 026078 124 KVLNGRTVNASIAA 137 (244)
Q Consensus 124 ~~i~gr~i~V~~a~ 137 (244)
.+|.|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888764
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.89 E-value=0.0047 Score=56.34 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHH
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAAR 119 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~ 119 (244)
.++|||. +|..+++.+|.++|++||+|..+.+..++ | -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 3799997 79999999999999999999999887653 2 699999999999887765
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.32 E-value=0.0094 Score=45.48 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=36.9
Q ss_pred CCcccEEEEEeCChhHHHHHHHHh-CCceeCCeEEEEEEccC
Q 026078 98 RKSRGVAFIQFVQIPDALSAARAI-HGKVLNGRTVNASIAAD 138 (244)
Q Consensus 98 g~~rg~aFV~f~~~~~A~~Ai~~l-~g~~i~gr~i~V~~a~~ 138 (244)
...+|+++|+|.+.++|++|+..| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 467899999999999999999999 9999999 999998865
No 221
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=94.83 E-value=0.054 Score=32.10 Aligned_cols=33 Identities=30% Similarity=0.739 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026078 150 VYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182 (244)
Q Consensus 150 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 182 (244)
.......||.|+..||+.+.||....+.+.+++
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~~~~r~~~~ 38 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRP 38 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSCCCTTCCCT
T ss_pred CCCCCCeeeECCCCCcchhhCcCCcccCCCCCC
Confidence 345567899999999999999988776666554
No 222
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=93.30 E-value=0.083 Score=33.68 Aligned_cols=34 Identities=32% Similarity=0.764 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026078 149 RVYKDKSRCYECGDEGHLSYECPRNQLGPRERPM 182 (244)
Q Consensus 149 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 182 (244)
+.......|+.|+..||+.++||....+.+.+++
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~~~~~~~~~ 51 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRP 51 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCCCSSCSCCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCccccCCCCc
Confidence 4455667899999999999999987765555443
No 223
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.44 E-value=0.014 Score=45.08 Aligned_cols=19 Identities=42% Similarity=0.968 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 026078 154 KSRCYECGDEGHLSYECPR 172 (244)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~ 172 (244)
...||.|+..||+...|+.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 3569999999999999975
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.32 E-value=0.63 Score=42.86 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=45.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhC
Q 026078 59 KSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIH 122 (244)
Q Consensus 59 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~ 122 (244)
...++|+ +|..+...+|.++|+.||.| .|.++.+ -.|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 88899999999999999954 5665544 279999999999999999885
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.94 E-value=0.71 Score=30.71 Aligned_cols=68 Identities=9% Similarity=0.302 Sum_probs=44.7
Q ss_pred EEEEe-CCCCCCCHHHHHHHhccCCc-----eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCceeCCeEEEEE
Q 026078 61 TVYVS-NLDYALTNSDLHTLFSTFGK-----IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKVLNGRTVNAS 134 (244)
Q Consensus 61 ~lfV~-nLp~~~te~~L~~~F~~~G~-----i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~i~gr~i~V~ 134 (244)
+|||. +--..++..+|..++..-+. |-.|.|..+ |.||+... ..+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56663 33455677788888876554 456667443 89999875 46888999999999999999998
Q ss_pred Ecc
Q 026078 135 IAA 137 (244)
Q Consensus 135 ~a~ 137 (244)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 226
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=83.59 E-value=0.85 Score=23.97 Aligned_cols=19 Identities=32% Similarity=1.092 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPRN 173 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~ 173 (244)
..||.||..||++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4599999999999999864
No 227
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=68.81 E-value=1.4 Score=31.50 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCCEEEEeCCCCCCCHHH
Q 026078 57 PSKSTVYVSNLDYALTNSD 75 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~ 75 (244)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3457899999999999763
No 228
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.46 E-value=33 Score=23.80 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh
Q 026078 57 PSKSTVYVSNLDYALTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (244)
Q Consensus 57 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 121 (244)
..+|.|-|-|+|..+-..++.-.....|---.|..+- |-|.|.|.+.++...||..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3568899999999998888776677777655665532 57999999999999999876
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.73 E-value=32 Score=26.75 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=40.0
Q ss_pred CEEEEeCCCC-C--------CCHHHHHHHh--ccCCceEEEEEeecCCCCCcccEEEEEeC-ChhHHHHHHH
Q 026078 60 STVYVSNLDY-A--------LTNSDLHTLF--STFGKIARVTVLKDRATRKSRGVAFIQFV-QIPDALSAAR 119 (244)
Q Consensus 60 ~~lfV~nLp~-~--------~te~~L~~~F--~~~G~i~~i~i~~d~~tg~~rg~aFV~f~-~~~~A~~Ai~ 119 (244)
.++.|-|+|. . .....|.+.| ..|.++. |..+.++ ..+.|+|.|.|. +..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4677888887 2 3346899977 9998866 5555554 347899999998 5555666655
No 230
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=52.24 E-value=19 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 026078 154 KSRCYECGDEGHLSYECPRNQL 175 (244)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~~~ 175 (244)
...|+.|+..||+..+|+....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTS
T ss_pred CcceeECCCCCCccCcCCCccc
Confidence 4569999999999999986543
No 231
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=50.09 E-value=8 Score=20.57 Aligned_cols=18 Identities=44% Similarity=1.167 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPR 172 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (244)
..||.||..||+...|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 469999999999999963
No 232
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=44.46 E-value=11 Score=25.57 Aligned_cols=20 Identities=35% Similarity=1.074 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPRNQ 174 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~~ 174 (244)
..||.||..||++++|+..+
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 46999999999999998644
No 233
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=40.86 E-value=26 Score=23.09 Aligned_cols=20 Identities=40% Similarity=0.928 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 026078 153 DKSRCYECGDEGHLSYECPR 172 (244)
Q Consensus 153 ~~~~~~~~g~~g~~~~~~~~ 172 (244)
....||.|+..||+...|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 34568999999999999874
No 234
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=40.48 E-value=14 Score=23.25 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPRNQL 175 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~~~~ 175 (244)
..|+.|+..||+..+|+....
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC-
T ss_pred CeeCCCCCCCCCcCCCcCCCc
Confidence 458888888888888876543
No 235
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.88 E-value=10 Score=23.73 Aligned_cols=20 Identities=40% Similarity=1.069 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 026078 154 KSRCYECGDEGHLSYECPRN 173 (244)
Q Consensus 154 ~~~~~~~g~~g~~~~~~~~~ 173 (244)
...|+.||..||+..+|+.+
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 34699999999999999843
No 236
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=35.27 E-value=29 Score=32.72 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.3
Q ss_pred eCCCCCCCHHHHHHHhc----cCCceEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHh
Q 026078 65 SNLDYALTNSDLHTLFS----TFGKIARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAI 121 (244)
Q Consensus 65 ~nLp~~~te~~L~~~F~----~~G~i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 121 (244)
+..+.+.+-.||..+|- .+|.|+.+.|..-+. .....+++|.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34555566667888883 678899887655432 334567899999999999988765
No 237
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=34.45 E-value=4.3 Score=36.40 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHhccCCceEEE
Q 026078 76 LHTLFSTFGKIARV 89 (244)
Q Consensus 76 L~~~F~~~G~i~~i 89 (244)
|..+|.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 67899999998877
No 238
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=33.26 E-value=30 Score=20.65 Aligned_cols=18 Identities=44% Similarity=1.167 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPR 172 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (244)
..||.|+..||+...|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 468999999999998875
No 239
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.76 E-value=41 Score=27.87 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=25.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEee
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~ 93 (244)
..+.|+|||+.++...|..++.. ..+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999977 6665554443
No 240
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=31.90 E-value=18 Score=30.16 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEee
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~ 93 (244)
..+.|+|||+.++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998665666665554
No 241
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=30.09 E-value=38 Score=19.03 Aligned_cols=17 Identities=35% Similarity=1.064 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECP 171 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~ 171 (244)
..|+.|+..||+..+|+
T Consensus 22 ~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SSCTTTCCSSSCTTTSC
T ss_pred CccccCCCCCCccCcCc
Confidence 46888888999888876
No 242
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.57 E-value=1e+02 Score=21.60 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhcc-CC---ceEEE-EEeecCCCCCcccEEEEEeCChhHHHHH
Q 026078 69 YALTNSDLHTLFST-FG---KIARV-TVLKDRATRKSRGVAFIQFVQIPDALSA 117 (244)
Q Consensus 69 ~~~te~~L~~~F~~-~G---~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~A 117 (244)
..++..+|++-+.+ |+ .+.-| .+....-.|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777665544 22 23333 34444444678888877 7776665544
No 243
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.22 E-value=44 Score=21.05 Aligned_cols=18 Identities=44% Similarity=1.042 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 026078 155 SRCYECGDEGHLSYECPR 172 (244)
Q Consensus 155 ~~~~~~g~~g~~~~~~~~ 172 (244)
..||.|+..||+...|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 346677777777766653
No 244
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.24 E-value=42 Score=29.05 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=19.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHhcc
Q 026078 60 STVYVSNLDYALTNSDLHTLFST 82 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~ 82 (244)
..++|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888764
No 245
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.32 E-value=1.2e+02 Score=21.24 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhcc-C---CceEEE-EEeecCCCCCcccEEEEEeCChhHHHH
Q 026078 69 YALTNSDLHTLFST-F---GKIARV-TVLKDRATRKSRGVAFIQFVQIPDALS 116 (244)
Q Consensus 69 ~~~te~~L~~~F~~-~---G~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~ 116 (244)
..++..+|++-+.+ | ..+.-| .+....-.|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777665543 2 223333 34444445678888877 777766654
No 246
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=26.21 E-value=38 Score=18.75 Aligned_cols=17 Identities=53% Similarity=1.306 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 026078 156 RCYECGDEGHLSYECPR 172 (244)
Q Consensus 156 ~~~~~g~~g~~~~~~~~ 172 (244)
.||.|+..||+...|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 47889999999999875
No 247
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=24.66 E-value=61 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEE
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTV 91 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i 91 (244)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999988888875444444433
No 248
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=24.63 E-value=1.3e+02 Score=21.33 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhcc-CC---ceEEE-EEeecCCCCCcccEEEEEeCChhHHHHH
Q 026078 70 ALTNSDLHTLFST-FG---KIARV-TVLKDRATRKSRGVAFIQFVQIPDALSA 117 (244)
Q Consensus 70 ~~te~~L~~~F~~-~G---~i~~i-~i~~d~~tg~~rg~aFV~f~~~~~A~~A 117 (244)
.++..+|++-+.. |+ .+.-| .+....-.|++.|||.| |.+.+.|.+.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567776655543 22 23333 33333344678889887 7777666653
No 249
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=22.12 E-value=43 Score=20.30 Aligned_cols=15 Identities=47% Similarity=1.455 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCCC
Q 026078 157 CYECGDEGHLSYECP 171 (244)
Q Consensus 157 ~~~~g~~g~~~~~~~ 171 (244)
||.|+..||+...|+
T Consensus 15 C~~Cg~~GH~a~~C~ 29 (55)
T 1a1t_A 15 CFNCGKEGHIAKNCR 29 (55)
T ss_dssp CTTTCCBSSCGGGCS
T ss_pred eeeeCCCCcChhhcC
Confidence 455555555554444
No 250
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.60 E-value=30 Score=28.29 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCceEEEEEee
Q 026078 61 TVYVSNLDYALTNSDLHTLFSTFGKIARVTVLK 93 (244)
Q Consensus 61 ~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~~ 93 (244)
-..|+|||+.++...|..++.....+..+.++.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 348999999999999999998766666555544
No 251
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.54 E-value=58 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=24.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHhccCCceEEEEEe
Q 026078 60 STVYVSNLDYALTNSDLHTLFSTFGKIARVTVL 92 (244)
Q Consensus 60 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~i~i~ 92 (244)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 347899999999999999988765444444443
No 252
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.75 E-value=75 Score=21.58 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=26.8
Q ss_pred eEEEEEeecCCCCCcccEEEEEeCChhHHHHHHHHhCCce
Q 026078 86 IARVTVLKDRATRKSRGVAFIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 86 i~~i~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l~g~~ 125 (244)
|..+.++. ...||-||++...++...+|..+.|..
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 55665543 278999999999988888888777653
No 253
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.04 E-value=23 Score=25.20 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=32.4
Q ss_pred CCHHHHHHHhccCCceEEEEEeecCCCCCcccEE--EEEeCChhHHHHHHHHhCCce
Q 026078 71 LTNSDLHTLFSTFGKIARVTVLKDRATRKSRGVA--FIQFVQIPDALSAARAIHGKV 125 (244)
Q Consensus 71 ~te~~L~~~F~~~G~i~~i~i~~d~~tg~~rg~a--FV~f~~~~~A~~Ai~~l~g~~ 125 (244)
..+++|..|..+.+ +..+.+......|+. -|. +-.|.+.++|..|+..|....
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 44566777777775 344554443222322 233 347899999999999886433
Done!