Query 026079
Match_columns 244
No_of_seqs 203 out of 378
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 2.7E-82 5.8E-87 569.3 22.3 215 1-244 1-226 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 2.8E-45 6.1E-50 313.6 13.0 120 118-237 1-126 (177)
3 KOG3088 Secretory carrier memb 99.1 7E-10 1.5E-14 101.3 12.9 85 77-161 64-155 (313)
4 PF05915 DUF872: Eukaryotic pr 86.8 4.4 9.5E-05 32.8 7.8 69 142-213 41-109 (115)
5 PRK12704 phosphodiesterase; Pr 79.7 3.3 7.2E-05 41.4 5.4 6 89-94 112-117 (520)
6 KOG3966 p53-mediated apoptosis 77.7 8.7 0.00019 36.0 7.0 66 139-206 89-173 (360)
7 PF14257 DUF4349: Domain of un 75.4 28 0.00061 31.1 9.6 10 143-152 217-226 (262)
8 PF05297 Herpes_LMP1: Herpesvi 72.5 1.2 2.5E-05 41.9 0.0 52 177-229 103-155 (381)
9 PF07787 DUF1625: Protein of u 72.5 9.6 0.00021 34.1 5.9 27 145-171 186-212 (248)
10 PF11712 Vma12: Endoplasmic re 72.3 53 0.0011 26.9 13.1 12 157-168 79-90 (142)
11 PF01956 DUF106: Integral memb 71.9 24 0.00053 29.4 7.9 19 80-98 43-61 (168)
12 KOG3312 Predicted membrane pro 70.6 54 0.0012 28.2 9.5 32 81-112 42-78 (186)
13 PRK11098 microcin B17 transpor 68.7 34 0.00074 33.4 9.1 57 146-207 60-124 (409)
14 PF04210 MtrG: Tetrahydrometha 64.5 57 0.0012 24.3 9.0 59 78-166 10-68 (70)
15 KOG3859 Septins (P-loop GTPase 62.6 15 0.00032 34.9 5.1 30 81-110 334-371 (406)
16 COG1422 Predicted membrane pro 58.3 86 0.0019 27.9 8.8 27 194-220 157-184 (201)
17 KOG1150 Predicted molecular ch 56.2 16 0.00034 32.9 3.9 26 80-105 168-195 (250)
18 PF14265 DUF4355: Domain of un 53.7 37 0.0008 26.9 5.4 23 85-107 47-69 (125)
19 PRK12705 hypothetical protein; 53.0 26 0.00057 35.1 5.4 14 83-96 94-107 (508)
20 KOG1690 emp24/gp25L/p24 family 52.0 46 0.00099 29.8 6.0 29 81-110 143-172 (215)
21 KOG1996 mRNA splicing factor [ 51.0 25 0.00055 33.3 4.5 26 78-103 116-141 (378)
22 PF10166 DUF2368: Uncharacteri 50.7 1.4E+02 0.0031 24.6 10.5 15 185-199 76-90 (131)
23 PF03154 Atrophin-1: Atrophin- 50.1 14 0.00031 39.6 3.1 8 99-106 734-741 (982)
24 cd07912 Tweety_N N-terminal do 47.7 2.8E+02 0.0061 27.2 11.4 30 142-171 199-228 (418)
25 PRK01026 tetrahydromethanopter 47.0 1.3E+02 0.0027 22.9 9.9 62 78-169 13-74 (77)
26 PF12737 Mating_C: C-terminal 45.5 25 0.00054 34.5 3.8 25 79-103 394-418 (419)
27 KOG4721 Serine/threonine prote 44.7 25 0.00054 36.5 3.7 19 95-113 450-468 (904)
28 PF13863 DUF4200: Domain of un 44.1 65 0.0014 25.3 5.4 26 82-107 16-41 (126)
29 PF11471 Sugarporin_N: Maltopo 43.9 54 0.0012 23.5 4.4 22 87-108 32-53 (60)
30 COG4818 Predicted membrane pro 43.4 27 0.00058 27.8 2.9 18 192-209 69-86 (105)
31 PF14265 DUF4355: Domain of un 43.0 35 0.00075 27.1 3.7 36 79-115 48-83 (125)
32 PF04281 Tom22: Mitochondrial 41.3 82 0.0018 26.3 5.7 21 176-196 92-112 (137)
33 PF06476 DUF1090: Protein of u 40.8 42 0.0009 27.1 3.8 23 83-105 66-88 (115)
34 PF12737 Mating_C: C-terminal 40.7 30 0.00065 33.9 3.5 26 85-110 393-418 (419)
35 PF05884 ZYG-11_interact: Inte 40.3 2E+02 0.0042 27.2 8.6 20 181-201 139-158 (299)
36 PF14851 FAM176: FAM176 family 39.4 33 0.00071 29.2 3.1 18 87-105 117-134 (153)
37 PF03938 OmpH: Outer membrane 39.2 74 0.0016 25.8 5.2 19 80-98 76-94 (158)
38 PF03154 Atrophin-1: Atrophin- 39.2 24 0.00052 38.0 2.7 15 82-96 580-597 (982)
39 COG2991 Uncharacterized protei 38.9 30 0.00065 26.1 2.5 26 216-243 4-29 (77)
40 TIGR00986 3a0801s05tom22 mitoc 38.5 1.1E+02 0.0024 25.9 6.1 22 175-196 89-110 (145)
41 KOG3879 Predicted membrane pro 38.3 42 0.00092 30.7 3.8 26 204-229 50-75 (267)
42 PF10268 Tmemb_161AB: Predicte 38.2 2.6E+02 0.0057 28.0 9.7 59 151-209 104-163 (486)
43 PF14991 MLANA: Protein melan- 37.8 6.2 0.00013 32.1 -1.4 30 179-208 27-59 (118)
44 TIGR01149 mtrG N5-methyltetrah 37.7 1.7E+02 0.0037 21.8 9.1 56 80-165 12-67 (70)
45 PRK10780 periplasmic chaperone 37.5 87 0.0019 26.2 5.5 8 86-93 89-96 (165)
46 PF06936 Selenoprotein_S: Sele 37.4 71 0.0015 28.0 5.0 22 82-103 89-110 (190)
47 KOG4721 Serine/threonine prote 36.7 29 0.00063 36.1 2.8 25 83-107 445-469 (904)
48 MTH00010 ND1 NADH dehydrogenas 35.8 1.7E+02 0.0038 27.2 7.7 29 191-219 265-293 (311)
49 COG4064 MtrG Tetrahydromethano 35.3 1.9E+02 0.0042 21.7 8.8 24 145-168 50-73 (75)
50 PF06305 DUF1049: Protein of u 35.2 57 0.0012 22.8 3.4 22 83-104 44-65 (68)
51 PF05178 Kri1: KRI1-like famil 34.9 55 0.0012 25.8 3.6 15 84-98 3-17 (101)
52 PF04201 TPD52: Tumour protein 34.7 1.8E+02 0.0038 25.1 6.9 29 80-108 29-57 (162)
53 COG3671 Predicted membrane pro 34.3 1.3E+02 0.0029 24.7 5.8 32 140-171 19-50 (125)
54 PF00816 Histone_HNS: H-NS his 33.6 94 0.002 23.4 4.6 36 81-116 2-39 (93)
55 PHA02148 hypothetical protein 33.5 1.5E+02 0.0033 23.4 5.7 14 97-110 58-71 (110)
56 PF06476 DUF1090: Protein of u 33.5 94 0.002 25.0 4.8 22 77-98 67-88 (115)
57 KOG3231 Predicted assembly/vac 33.1 96 0.0021 27.1 5.0 26 80-105 18-43 (208)
58 PLN03181 glycosyltransferase; 32.8 53 0.0011 32.5 3.8 51 78-128 334-397 (453)
59 PF10716 NdhL: NADH dehydrogen 32.1 1.2E+02 0.0026 23.2 4.9 41 179-222 22-62 (81)
60 PF04144 SCAMP: SCAMP family; 31.8 3.2E+02 0.007 23.2 8.8 37 113-150 3-42 (177)
61 TIGR01654 bact_immun_7tm bacte 31.8 5.9E+02 0.013 26.2 11.7 38 129-166 553-590 (679)
62 PF11853 DUF3373: Protein of u 31.2 44 0.00096 33.5 3.1 26 81-106 28-53 (489)
63 PF05529 Bap31: B-cell recepto 30.9 96 0.0021 26.4 4.8 23 83-105 157-179 (192)
64 KOG2391 Vacuolar sorting prote 30.3 1E+02 0.0023 29.6 5.2 9 88-96 236-244 (365)
65 PF09278 MerR-DNA-bind: MerR, 29.8 1.1E+02 0.0023 21.1 4.1 22 82-103 41-62 (65)
66 PF13061 DUF3923: Protein of u 29.7 82 0.0018 23.0 3.5 22 180-201 6-27 (66)
67 PF05082 Rop-like: Rop-like; 29.5 57 0.0012 24.1 2.6 16 131-146 26-41 (66)
68 PF05600 DUF773: Protein of un 28.9 1.2E+02 0.0025 30.5 5.5 56 80-137 134-197 (507)
69 PF06570 DUF1129: Protein of u 28.5 3.5E+02 0.0076 23.3 7.9 10 163-172 95-104 (206)
70 PF10205 KLRAQ: Predicted coil 28.4 1.6E+02 0.0034 23.5 5.1 19 80-98 33-51 (102)
71 PF03142 Chitin_synth_2: Chiti 28.3 3.4E+02 0.0074 27.5 8.7 13 211-223 456-468 (527)
72 COG5524 Bacteriorhodopsin [Gen 27.8 5.1E+02 0.011 24.3 9.2 81 141-234 98-178 (285)
73 PF05988 DUF899: Bacterial pro 27.8 58 0.0013 29.1 2.9 28 78-105 8-35 (211)
74 PRK08319 cobalt transport prot 27.6 4.3E+02 0.0094 23.4 10.7 59 143-203 74-132 (224)
75 PF05278 PEARLI-4: Arabidopsis 27.5 1.4E+02 0.003 27.8 5.3 19 86-104 206-224 (269)
76 KOG3866 DNA-binding protein of 26.8 83 0.0018 30.2 3.9 30 76-105 342-371 (442)
77 PF13863 DUF4200: Domain of un 26.5 1.3E+02 0.0027 23.6 4.4 25 81-105 22-46 (126)
78 TIGR02051 MerR Hg(II)-responsi 26.4 2E+02 0.0044 22.8 5.6 25 81-105 80-104 (124)
79 KOG2881 Predicted membrane pro 26.3 38 0.00082 31.6 1.5 22 86-107 160-181 (294)
80 PF07334 IFP_35_N: Interferon- 26.1 2E+02 0.0044 21.7 5.2 14 92-105 12-25 (76)
81 KOG4552 Vitamin-D-receptor int 25.7 1.5E+02 0.0033 26.9 5.1 24 84-107 71-94 (272)
82 KOG2391 Vacuolar sorting prote 25.7 1.4E+02 0.003 28.8 5.2 12 93-104 234-245 (365)
83 PF13903 Claudin_2: PMP-22/EMP 25.5 3.4E+02 0.0074 21.5 10.9 22 210-231 146-167 (172)
84 PF07795 DUF1635: Protein of u 25.5 1.6E+02 0.0034 26.5 5.2 12 85-96 24-35 (214)
85 KOG3915 Transcription regulato 25.4 1.3E+02 0.0029 30.3 5.1 24 82-105 521-545 (641)
86 PF11214 Med2: Mediator comple 25.4 80 0.0017 25.3 3.0 9 80-88 79-87 (105)
87 PF07334 IFP_35_N: Interferon- 25.3 1E+02 0.0022 23.3 3.4 27 81-107 8-34 (76)
88 KOG4279 Serine/threonine prote 25.1 2.3E+02 0.0049 30.7 6.9 18 81-98 1106-1123(1226)
89 PF10856 DUF2678: Protein of u 25.0 1.7E+02 0.0038 23.9 4.9 44 178-228 62-107 (118)
90 PF15086 UPF0542: Uncharacteri 25.0 1.4E+02 0.0029 22.6 4.0 16 85-100 44-59 (74)
91 KOG2881 Predicted membrane pro 24.9 55 0.0012 30.5 2.3 27 77-103 158-184 (294)
92 PHA01750 hypothetical protein 24.8 94 0.002 23.1 3.0 15 89-103 54-68 (75)
93 PF03219 TLC: TLC ATP/ADP tran 24.6 4.6E+02 0.0099 26.1 8.8 67 146-212 25-93 (491)
94 PF00146 NADHdh: NADH dehydrog 24.6 3.3E+02 0.0072 25.1 7.5 31 189-219 266-296 (311)
95 PF05988 DUF899: Bacterial pro 24.5 1.6E+02 0.0034 26.5 5.0 27 77-103 14-40 (211)
96 TIGR02976 phageshock_pspB phag 24.5 2E+02 0.0042 21.6 4.8 24 81-104 39-62 (75)
97 COG4372 Uncharacterized protei 24.4 1.5E+02 0.0032 29.4 5.1 11 97-107 213-223 (499)
98 cd04769 HTH_MerR2 Helix-Turn-H 23.9 1.7E+02 0.0038 22.8 4.8 25 82-106 84-108 (116)
99 COG4372 Uncharacterized protei 23.8 1.7E+02 0.0036 28.9 5.4 16 89-104 212-227 (499)
100 PF07047 OPA3: Optic atrophy 3 23.8 1.5E+02 0.0032 24.2 4.5 22 84-105 105-126 (134)
101 PF12848 ABC_tran_2: ABC trans 23.7 2.1E+02 0.0045 20.6 4.9 17 85-101 22-38 (85)
102 KOG4808 Uncharacterized conser 23.6 1E+02 0.0022 26.0 3.4 27 87-122 104-130 (151)
103 KOG1962 B-cell receptor-associ 23.6 1.5E+02 0.0032 26.7 4.7 23 80-102 158-180 (216)
104 PF09726 Macoilin: Transmembra 23.4 1.6E+02 0.0035 30.8 5.6 38 178-223 48-85 (697)
105 PRK11637 AmiB activator; Provi 23.4 1.7E+02 0.0037 28.2 5.4 18 136-153 118-135 (428)
106 cd04770 HTH_HMRTR Helix-Turn-H 23.2 1.9E+02 0.0041 22.6 4.9 23 82-104 84-106 (123)
107 KOG3866 DNA-binding protein of 22.9 95 0.0021 29.8 3.5 24 86-109 345-368 (442)
108 PF07271 Cytadhesin_P30: Cytad 22.9 2.5E+02 0.0054 26.2 6.1 24 142-165 6-29 (279)
109 COG5346 Predicted membrane pro 22.7 4.4E+02 0.0095 21.9 6.9 32 155-188 97-128 (136)
110 PF03904 DUF334: Domain of unk 22.6 5.9E+02 0.013 23.2 13.4 18 139-156 141-158 (230)
111 TIGR00870 trp transient-recept 22.4 1.2E+02 0.0026 31.1 4.5 30 140-169 583-612 (743)
112 PF07131 DUF1382: Protein of u 22.4 1.5E+02 0.0032 21.6 3.6 26 72-97 27-52 (61)
113 TIGR03752 conj_TIGR03752 integ 22.3 1.4E+02 0.003 30.0 4.6 28 81-108 70-97 (472)
114 PF12666 PrgI: PrgI family pro 22.3 2.9E+02 0.0062 20.6 5.5 22 179-200 46-67 (93)
115 COG4125 Predicted membrane pro 22.2 4.8E+02 0.01 22.1 7.1 68 151-222 46-126 (149)
116 PRK11909 cobalt transport prot 22.1 5.7E+02 0.012 22.8 11.0 56 143-202 72-129 (230)
117 KOG2668 Flotillins [Intracellu 21.8 99 0.0021 30.1 3.4 22 144-166 343-366 (428)
118 CHL00032 ndhA NADH dehydrogena 21.7 7.2E+02 0.016 23.8 9.8 28 192-219 318-345 (363)
119 KOG4010 Coiled-coil protein TP 21.5 2.4E+02 0.0052 25.1 5.4 24 87-110 51-74 (208)
120 KOG3091 Nuclear pore complex, 21.5 1.1E+02 0.0023 30.9 3.7 20 88-107 373-392 (508)
121 KOG4193 G protein-coupled rece 21.5 5.4E+02 0.012 26.6 8.8 38 192-230 407-445 (610)
122 PRK13735 conjugal transfer mat 21.5 5.9E+02 0.013 27.9 9.3 22 177-198 358-379 (942)
123 PF05529 Bap31: B-cell recepto 21.3 1.8E+02 0.004 24.6 4.8 18 81-98 162-179 (192)
124 PF15035 Rootletin: Ciliary ro 21.2 2.3E+02 0.005 24.5 5.4 30 81-110 103-132 (182)
125 PRK00888 ftsB cell division pr 20.9 2.6E+02 0.0057 21.9 5.2 24 81-104 31-54 (105)
126 TIGR02051 MerR Hg(II)-responsi 20.9 1.5E+02 0.0033 23.5 4.0 28 85-112 77-104 (124)
127 PF02344 Myc-LZ: Myc leucine z 20.7 2.4E+02 0.0052 17.9 4.3 11 96-106 13-23 (32)
128 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.6 3.1E+02 0.0068 21.8 5.7 24 82-105 84-107 (127)
129 PF11368 DUF3169: Protein of u 20.5 6E+02 0.013 22.5 9.6 30 179-208 132-162 (248)
130 PF12794 MscS_TM: Mechanosensi 20.1 7.3E+02 0.016 23.3 9.2 25 209-233 194-218 (340)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-82 Score=569.29 Aligned_cols=215 Identities=54% Similarity=0.968 Sum_probs=195.8
Q ss_pred CCCCCCCCCCCC-CCCCCCCCccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccc-
Q 026079 1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT- 78 (244)
Q Consensus 1 M~~~~d~nPf~~-~~~NPF~Dpsv~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~- 78 (244)
|+ +||+|||+| +++|||+||+|+|+.++ +.++|.+++++++. .+.|+++|.++
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~~~--~~~tv~~P~~~~ 55 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAPSD--QGPTVDIPLDSP 55 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCCCC--CCCccccCCCCC
Confidence 67 999999998 88999999999987222 23344444554332 36778888877
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCCC------CCCCccccccccchhHhHHHHHHHHH
Q 026079 79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF 149 (244)
Q Consensus 79 ---~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~NwP------p~~P~~y~dI~~EIP~~~q~~v~~~y 149 (244)
.+|+++||+||.|||+||+|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++|
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y 135 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY 135 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999 56799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHh
Q 026079 150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF 229 (244)
Q Consensus 150 ~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F~~FF~~~~~~i~f~v~ 229 (244)
|+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+||||||+||||+|++|++|||+
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccccCccCC
Q 026079 230 ASVAPPIIFKGKSLT 244 (244)
Q Consensus 230 ~aiG~p~~f~g~~~~ 244 (244)
+||| |+||+++
T Consensus 216 qAvg----f~g~~~~ 226 (313)
T KOG3088|consen 216 QAVG----FPGWGLC 226 (313)
T ss_pred HHHc----cCCcchh
Confidence 9999 8898875
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=2.8e-45 Score=313.59 Aligned_cols=120 Identities=44% Similarity=0.902 Sum_probs=116.3
Q ss_pred CcCCCCCCC------CccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhh
Q 026079 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP 191 (244)
Q Consensus 118 ~~~NwPp~~------P~~y~dI~~EIP~~~q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P 191 (244)
|+|||||++ ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|+||++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 579999999 99999999999999999999999999999999999999999999987778899999999999999
Q ss_pred hHHhHhhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhhccCCcc
Q 026079 192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII 237 (244)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~F~~FF~~~~~~i~f~v~~aiG~p~~ 237 (244)
+||+|||||||||+|+|||++|++||+++++|++||++++||+|..
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~ 126 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGW 126 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999964
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=7e-10 Score=101.26 Aligned_cols=85 Identities=28% Similarity=0.432 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc---CCCCCCCCccccccccchhHhHHHHH--HHHHHH
Q 026079 77 DTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE---KNWPPFFPIIHHDIANEIPIHLQRLQ--YVAFAT 151 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~---~NwPp~~P~~y~dI~~EIP~~~q~~v--~~~y~~ 151 (244)
.+++||+|||+||+|||+||+|||+++++-..+.+..||++.| +-.|=+|--|--||.+|..+-..++- +++|.+
T Consensus 64 ~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~ 143 (313)
T KOG3088|consen 64 KKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVL 143 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999865556667898766 45666788999999999987665543 455554
Q ss_pred HHH--HHHHHHH
Q 026079 152 YLG--LFLCLLW 161 (244)
Q Consensus 152 wl~--~~~~L~~ 161 (244)
-|+ .+.||.|
T Consensus 144 tL~~Niia~la~ 155 (313)
T KOG3088|consen 144 TLLWNIIACLAW 155 (313)
T ss_pred HHHHHHHHHHHH
Confidence 333 4556655
No 4
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=86.78 E-value=4.4 Score=32.76 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhH
Q 026079 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKF 213 (244)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F 213 (244)
.|.+-.+..+.++-++.+++.++.. +--+.+.....+.+-++=+++++|+.|.+ |-+|.|.|.-..+.|
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~-~~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLF-FGHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF 109 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence 4444444444443333333332221 11123444556777788888999999987 578888887665554
No 5
>PRK12704 phosphodiesterase; Provisional
Probab=79.74 E-value=3.3 Score=41.37 Aligned_cols=6 Identities=50% Similarity=0.650 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026079 89 LQAKEA 94 (244)
Q Consensus 89 L~rke~ 94 (244)
|+++++
T Consensus 112 L~~re~ 117 (520)
T PRK12704 112 LEKKEK 117 (520)
T ss_pred HHHHHH
Confidence 333333
No 6
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=77.72 E-value=8.7 Score=35.99 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCC----Cc----hHHHHHHHH-HHhhhhhHHh------HhhH
Q 026079 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTA----WIKGE----GV----KIWFLAIIY-FIAGVPGAYV------LWYR 199 (244)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~l~~~~~----~i~g~----~~----~~f~laily-~ilg~P~sf~------~WYr 199 (244)
..++.+.+..+..|+. +.|+||.+--++- .+.|. ++ -.++|+.|+ ++...|+.+. +|+-
T Consensus 89 ~~F~cc~wngg~~w~s--~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~ 166 (360)
T KOG3966|consen 89 DSFLCCLWNGGAMWIS--FLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFS 166 (360)
T ss_pred HHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999964 5789998754432 23331 11 123444443 3445566554 7888
Q ss_pred HHHHHhh
Q 026079 200 PLYRAFR 206 (244)
Q Consensus 200 plY~A~r 206 (244)
-+=+|+.
T Consensus 167 DIa~aa~ 173 (360)
T KOG3966|consen 167 DIAGAAM 173 (360)
T ss_pred HHHHHHH
Confidence 7776644
No 7
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.44 E-value=28 Score=31.14 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 026079 143 RLQYVAFATY 152 (244)
Q Consensus 143 ~~v~~~y~~w 152 (244)
++..-....|
T Consensus 217 ~~~~al~~~~ 226 (262)
T PF14257_consen 217 RFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHH
Confidence 4333434444
No 8
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=72.54 E-value=1.2 Score=41.86 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcch-hHHHHHHHHHHHHHHHHh
Q 026079 177 KIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAM-KFGWFFLFYLLHIGFCIF 229 (244)
Q Consensus 177 ~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~-~F~~FF~~~~~~i~f~v~ 229 (244)
+..++.|+.+++++-++..+|++ +.---+-..|+ .-..||+.|++-|++-|+
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y-m~lLr~~GAs~WtiLaFcLAF~LaivlLII 155 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY-MWLLRELGASFWTILAFCLAFLLAIVLLII 155 (381)
T ss_dssp ------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999988 65322334444 233455555555555444
No 9
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=72.52 E-value=9.6 Score=34.10 Aligned_cols=27 Identities=15% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026079 145 QYVAFATYLGLFLCLLWNIVAVTTAWI 171 (244)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~l~~~~~~i 171 (244)
.|.+=++-|++.+.++...+..++.++
T Consensus 186 lR~~G~llmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 186 LRFIGWLLMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555556666677776655554
No 10
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=72.27 E-value=53 Score=26.92 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q 026079 157 LCLLWNIVAVTT 168 (244)
Q Consensus 157 ~~L~~N~l~~~~ 168 (244)
+++++|++.+++
T Consensus 79 ls~v~Nilvsv~ 90 (142)
T PF11712_consen 79 LSTVFNILVSVF 90 (142)
T ss_pred HHHHHHHHHHHH
Confidence 678889887654
No 11
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=71.90 E-value=24 Score=29.44 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRR 98 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~r 98 (244)
++.++++++++++.+++++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~ 61 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRK 61 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666644
No 12
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=70.61 E-value=54 Score=28.20 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 026079 81 DLKKKEKELQAKEAEL-----RRREQDVRRKEEAAAR 112 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL-----~rRE~eL~~re~~~~~ 112 (244)
|..++.+.||+|.+|. +...+.+.|.|+.+.+
T Consensus 42 ~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~ 78 (186)
T KOG3312|consen 42 EVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKN 78 (186)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc
Confidence 5667777788777765 2244445555555543
No 13
>PRK11098 microcin B17 transporter; Reviewed
Probab=68.74 E-value=34 Score=33.39 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchH-------HHHHHHHHHhhhhhHHhHhhHHHHHHhhc
Q 026079 146 YVAFATYLGLFLCLLWNIVAVTTAWI-KGEGVKI-------WFLAIIYFIAGVPGAYVLWYRPLYRAFRT 207 (244)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~l~~~~~~i-~g~~~~~-------f~laily~ilg~P~sf~~WYrplY~A~r~ 207 (244)
.+++|+|...|..++. .+... +..+.+. ..+.+.+...++-..+--||++.|+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~-----~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~FydaLq~ 124 (409)
T PRK11098 60 FLWFYAYYLVCVGLFA-----GFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYDLIQT 124 (409)
T ss_pred HHHHHHHHHHHHHHHh-----hhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 5678888765554332 12212 2222222 22233444555666667899999999986
No 14
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=64.55 E-value=57 Score=24.33 Aligned_cols=59 Identities=14% Similarity=0.339 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCCCCCCCccccccccchhHhHHHHHHHHHHHHHHHHH
Q 026079 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 157 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPp~~P~~y~dI~~EIP~~~q~~v~~~y~~wl~~~~ 157 (244)
..+|.++-++.|+.-|+.++.-..|+.+|. | ...=|-+-++|.+-+++.+
T Consensus 10 ~~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~------G------------------------kkiGRDiGIlYG~v~Glii 59 (70)
T PF04210_consen 10 DPDDFNEIMKRLDEIEEKVEFTNAEIAQRA------G------------------------KKIGRDIGILYGLVIGLII 59 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHH
Confidence 345667777778878888887788887664 2 1222346788888888777
Q ss_pred HHHHHHHHH
Q 026079 158 CLLWNIVAV 166 (244)
Q Consensus 158 ~L~~N~l~~ 166 (244)
.+++..+.+
T Consensus 60 ~~~~~~l~~ 68 (70)
T PF04210_consen 60 FIIYIVLSS 68 (70)
T ss_pred HHHHHHHHH
Confidence 776666553
No 15
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.58 E-value=15 Score=34.86 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=16.4
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKEL--------QAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 81 ~l~~k~~EL--------~rke~EL~rRE~eL~~re~~~ 110 (244)
++++|++|+ +.||+||++.|+||..+.+.+
T Consensus 334 e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~l 371 (406)
T KOG3859|consen 334 ELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 335566666666665555444
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=58.31 E-value=86 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=15.0
Q ss_pred HhHhhHHHHHHhh-cCcchhHHHHHHHH
Q 026079 194 YVLWYRPLYRAFR-TESAMKFGWFFLFY 220 (244)
Q Consensus 194 f~~WYrplY~A~r-~dss~~F~~FF~~~ 220 (244)
+..|+-++|.-.. .|---..+|||++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~gWi~WYfLcS 184 (201)
T COG1422 157 LPTLFHILYHTAVFGDFLGWIGWYFLCS 184 (201)
T ss_pred hHHhhhhhhhccccccchHHHHHHHHHH
Confidence 3445556665555 34334677777744
No 17
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.18 E-value=16 Score=32.92 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRR--REQDVRR 105 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~r--RE~eL~~ 105 (244)
+++.+|.++|+.|+.|-++ ||.|+++
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIea 195 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEA 195 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4666676777666655443 4444543
No 18
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=53.72 E-value=37 Score=26.93 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026079 85 KEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~eL~~re 107 (244)
.+.|++.++++|+.+++++.+++
T Consensus 47 ~~~e~~~~~~el~~~~~e~~~~e 69 (125)
T PF14265_consen 47 AQEELEELEKELEELEAELARRE 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554433
No 19
>PRK12705 hypothetical protein; Provisional
Probab=53.04 E-value=26 Score=35.13 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 026079 83 KKKEKELQAKEAEL 96 (244)
Q Consensus 83 ~~k~~EL~rke~EL 96 (244)
.+|.++|++++++|
T Consensus 94 ~~~~~~l~~~~~~l 107 (508)
T PRK12705 94 DARAEKLDNLENQL 107 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 20
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.97 E-value=46 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRR-KEEAA 110 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~-re~~~ 110 (244)
.|..|...|..|-++++ ||++++| ||+..
T Consensus 143 ~l~~Rv~~L~~~~~~Ir-kEQ~~~R~RE~~F 172 (215)
T KOG1690|consen 143 LLEGRVRQLNSRLESIR-KEQNLQREREETF 172 (215)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34445555555555544 7777755 66433
No 21
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=50.95 E-value=25 Score=33.27 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 78 TAADLKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL 103 (244)
.+.+-.++.+|+.|+.+|.+.||++-
T Consensus 116 r~~~er~~~re~~r~~~e~eeRekre 141 (378)
T KOG1996|consen 116 RQRDERKQRRETAREVAEIEEREKRE 141 (378)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777776776666543
No 22
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=50.65 E-value=1.4e+02 Score=24.63 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=10.8
Q ss_pred HHHhhhhhHHhHhhH
Q 026079 185 YFIAGVPGAYVLWYR 199 (244)
Q Consensus 185 y~ilg~P~sf~~WYr 199 (244)
+++=.+|++|+|-|+
T Consensus 76 ~l~PlvPL~fv~~Yq 90 (131)
T PF10166_consen 76 FLIPLVPLTFVLGYQ 90 (131)
T ss_pred hhhhHHHHHHHHHHH
Confidence 345667999998664
No 23
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=50.12 E-value=14 Score=39.62 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 026079 99 REQDVRRK 106 (244)
Q Consensus 99 RE~eL~~r 106 (244)
|||||+.|
T Consensus 734 reReLrdR 741 (982)
T PF03154_consen 734 RERELRDR 741 (982)
T ss_pred HHHHHHHh
Confidence 55556544
No 24
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=47.66 E-value=2.8e+02 Score=27.23 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026079 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (244)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i 171 (244)
..+.+.=+|=|+.+.+.|++.++.|+++++
T Consensus 199 ~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~ 228 (418)
T cd07912 199 DQVSLYESYRWLAYLGLLSLLLVICLVLLV 228 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788999999999999999877664
No 25
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=47.01 E-value=1.3e+02 Score=22.93 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCCCCCCCccccccccchhHhHHHHHHHHHHHHHHHHH
Q 026079 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 157 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPp~~P~~y~dI~~EIP~~~q~~v~~~y~~wl~~~~ 157 (244)
..+|.++-++.|+.-|+.++.--.|+.+|. | +..=|-+=++|..-+++.+
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~------G------------------------kkvGRDiGIlYG~viGlli 62 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQRI------G------------------------KKVGRDIGILYGLVIGLLI 62 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHH
Confidence 345666666667666777777667776654 2 2222346788998888888
Q ss_pred HHHHHHHHHHHH
Q 026079 158 CLLWNIVAVTTA 169 (244)
Q Consensus 158 ~L~~N~l~~~~~ 169 (244)
++++..+..++.
T Consensus 63 ~~i~~~~~~~~~ 74 (77)
T PRK01026 63 VLVYIILSPIFM 74 (77)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 26
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=45.48 E-value=25 Score=34.50 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 79 AADLKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 79 ~~~l~~k~~EL~rke~EL~rRE~eL 103 (244)
.++++.|++||+..|+++++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666666665555555555554
No 27
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=44.65 E-value=25 Score=36.53 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026079 95 ELRRREQDVRRKEEAAARA 113 (244)
Q Consensus 95 EL~rRE~eL~~re~~~~~~ 113 (244)
+|+.||+||.+||+++.+.
T Consensus 450 qLelkEkElaerEq~l~rr 468 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERR 468 (904)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455677777777666543
No 28
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.08 E-value=65 Score=25.26 Aligned_cols=26 Identities=35% Similarity=0.737 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL~~re 107 (244)
|..+.+|.+++++.++.|+.+|..++
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~~~e 41 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELEKKE 41 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 29
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=43.90 E-value=54 Score=23.50 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 87 KELQAKEAELRRREQDVRRKEE 108 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~re~ 108 (244)
+.|+..|++|+.-|++++.-|.
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544443
No 30
>COG4818 Predicted membrane protein [Function unknown]
Probab=43.41 E-value=27 Score=27.80 Aligned_cols=18 Identities=39% Similarity=0.962 Sum_probs=15.6
Q ss_pred hHHhHhhHHHHHHhhcCc
Q 026079 192 GAYVLWYRPLYRAFRTES 209 (244)
Q Consensus 192 ~sf~~WYrplY~A~r~ds 209 (244)
.+|++|--++|||.|.+.
T Consensus 69 ~a~iLwlv~mykAyrGe~ 86 (105)
T COG4818 69 AAFILWLVCMYKAYRGER 86 (105)
T ss_pred HHHHHHHHHHHHHHcCCe
Confidence 478899999999999773
No 31
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=43.04 E-value=35 Score=27.08 Aligned_cols=36 Identities=42% Similarity=0.545 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 026079 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGI 115 (244)
Q Consensus 79 ~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~ 115 (244)
..++.+++++|+.+++++.+++.....+. .+...|+
T Consensus 48 ~~e~~~~~~el~~~~~e~~~~e~~~~~~~-~l~e~GL 83 (125)
T PF14265_consen 48 QEELEELEKELEELEAELARRELRSEAKK-VLAEKGL 83 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 35788999999999999998887655443 3555564
No 32
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=41.27 E-value=82 Score=26.30 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHhhhhhHHhH
Q 026079 176 VKIWFLAIIYFIAGVPGAYVL 196 (244)
Q Consensus 176 ~~~f~laily~ilg~P~sf~~ 196 (244)
...|+++.-.+|+|+|++|-+
T Consensus 92 ~a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 92 KALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999854
No 33
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=40.77 E-value=42 Score=27.07 Aligned_cols=23 Identities=13% Similarity=0.489 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026079 83 KKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 83 ~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
..++++...+++++.+||.||+.
T Consensus 66 ~e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 66 AERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777654
No 34
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=40.66 E-value=30 Score=33.93 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 85 KEKELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
.++|+++|.+||+..|++.++.+.++
T Consensus 393 ~~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 393 PEAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37788999999999998888766544
No 35
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=40.26 E-value=2e+02 Score=27.19 Aligned_cols=20 Identities=20% Similarity=-0.016 Sum_probs=11.3
Q ss_pred HHHHHHHhhhhhHHhHhhHHH
Q 026079 181 LAIIYFIAGVPGAYVLWYRPL 201 (244)
Q Consensus 181 laily~ilg~P~sf~~WYrpl 201 (244)
-|+|...+.+|+...- |.+.
T Consensus 139 gAaila~iviP~~~~y-~ln~ 158 (299)
T PF05884_consen 139 GAAILAYIVIPLIAYY-YLNK 158 (299)
T ss_pred hHHHHHHHHHHHHHHh-hccc
Confidence 3555556667766554 5444
No 36
>PF14851 FAM176: FAM176 family
Probab=39.44 E-value=33 Score=29.20 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026079 87 KELQAKEAELRRREQDVRR 105 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~ 105 (244)
+||+ |++.|++||+.++.
T Consensus 117 e~~e-~A~rlEeRe~iirE 134 (153)
T PF14851_consen 117 EELE-RAQRLEERERIIRE 134 (153)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3444 66677788887664
No 37
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=39.23 E-value=74 Score=25.81 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRR 98 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~r 98 (244)
++..++++||.+++++|++
T Consensus 76 ~~~~~~~~~l~~~~~~l~~ 94 (158)
T PF03938_consen 76 EERQKRQQELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666644
No 38
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=39.21 E-value=24 Score=37.97 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=8.0
Q ss_pred HHHHHHHH---HHHHHHH
Q 026079 82 LKKKEKEL---QAKEAEL 96 (244)
Q Consensus 82 l~~k~~EL---~rke~EL 96 (244)
|.||.+|+ .|||+|.
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 44544443 4566665
No 39
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.94 E-value=30 Score=26.08 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhccCCccccCccC
Q 026079 216 FFLFYLLHIGFCIFASVAPPIIFKGKSL 243 (244)
Q Consensus 216 FF~~~~~~i~f~v~~aiG~p~~f~g~~~ 243 (244)
|++.|.+.+++.+-|+||. +++-||+
T Consensus 4 ~lltFg~Fllvi~gMsiG~--I~krk~I 29 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGY--IFKRKSI 29 (77)
T ss_pred HHHHHHHHHHHHHHHhHhh--heecccc
Confidence 5666667777778888886 7887776
No 40
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=38.45 E-value=1.1e+02 Score=25.89 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.2
Q ss_pred CchHHHHHHHHHHhhhhhHHhH
Q 026079 175 GVKIWFLAIIYFIAGVPGAYVL 196 (244)
Q Consensus 175 ~~~~f~laily~ilg~P~sf~~ 196 (244)
|...|+++.-.+|+|+|+++-+
T Consensus 89 GkalWivsTSaLLLgVPlala~ 110 (145)
T TIGR00986 89 GRAAWAVSTSALLLGVPFAISF 110 (145)
T ss_pred CcchhhhHHHHHHHHHHHHHHH
Confidence 3457999999999999998754
No 41
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=38.32 E-value=42 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.3
Q ss_pred HhhcCcchhHHHHHHHHHHHHHHHHh
Q 026079 204 AFRTESAMKFGWFFLFYLLHIGFCIF 229 (244)
Q Consensus 204 A~r~dss~~F~~FF~~~~~~i~f~v~ 229 (244)
++|.|.|+++-.+..+-.+|+++-.+
T Consensus 50 ~~Rhd~a~ele~~~avnilqlIflaL 75 (267)
T KOG3879|consen 50 GFRHDLAFELEFTWAVNILQLIFLAL 75 (267)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888888888776553
No 42
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=38.24 E-value=2.6e+02 Score=28.02 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCc
Q 026079 151 TYLGLFLCLLWNIVAVTTAW-IKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTES 209 (244)
Q Consensus 151 ~wl~~~~~L~~N~l~~~~~~-i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~ds 209 (244)
-|++...+....+-...-++ ..-+....+=+|++|+++.+-.+.-+++.-.=.-++++.
T Consensus 104 ~WLvdFav~~~~Vyl~tE~y~~~~~~~~e~Nisv~w~lL~v~F~lk~L~sLt~~yf~s~~ 163 (486)
T PF10268_consen 104 QWLVDFAVYALVVYLFTEVYYFFVPPSTEFNISVVWCLLVVFFALKVLFSLTRLYFSSEE 163 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67766554444333322122 111222334567888888877788888887777777654
No 43
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=37.82 E-value=6.2 Score=32.10 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=2.0
Q ss_pred HHHHHHHHHhhhhhHHhHhh---HHHHHHhhcC
Q 026079 179 WFLAIIYFIAGVPGAYVLWY---RPLYRAFRTE 208 (244)
Q Consensus 179 f~laily~ilg~P~sf~~WY---rplY~A~r~d 208 (244)
.|.+||-+|+++-+.+-||| |.=||.+|+.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp -SSS-----------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhhhhhhc
Confidence 46677777888888899999 5678887654
No 44
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=37.75 E-value=1.7e+02 Score=21.81 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCCCCCCCccccccccchhHhHHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCL 159 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~NwPp~~P~~y~dI~~EIP~~~q~~v~~~y~~wl~~~~~L 159 (244)
+|.++-++.|+.-|+.++.--.|+.+|. | +..=|-+-++|..-+++.+++
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~E~~Qr~------G------------------------kk~GRDiGIlYG~viGlli~~ 61 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNGEVAQRI------G------------------------KKVGRDIGILYGLVIGLILFL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666776654 2 222234678888888877777
Q ss_pred HHHHHH
Q 026079 160 LWNIVA 165 (244)
Q Consensus 160 ~~N~l~ 165 (244)
+++.+.
T Consensus 62 ~~~~l~ 67 (70)
T TIGR01149 62 IYILLS 67 (70)
T ss_pred HHHHHH
Confidence 666654
No 45
>PRK10780 periplasmic chaperone; Provisional
Probab=37.49 E-value=87 Score=26.18 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 026079 86 EKELQAKE 93 (244)
Q Consensus 86 ~~EL~rke 93 (244)
++||.+++
T Consensus 89 ~~el~~~~ 96 (165)
T PRK10780 89 EKDVMAQR 96 (165)
T ss_pred HHHHHHHH
Confidence 33333333
No 46
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=37.40 E-value=71 Score=28.03 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL 103 (244)
-+|.|+|+++++++.+++++++
T Consensus 89 R~RmQEE~dakA~~~kEKq~q~ 110 (190)
T PF06936_consen 89 RRRMQEELDAKAEEYKEKQKQE 110 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776655544333
No 47
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=36.67 E-value=29 Score=36.06 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 83 KKKEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 83 ~~k~~EL~rke~EL~rRE~eL~~re 107 (244)
..---+|+-||.||.+||+.|.+|.
T Consensus 445 s~cm~qLelkEkElaerEq~l~rr~ 469 (904)
T KOG4721|consen 445 SACMLQLELKEKELAEREQALERRC 469 (904)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334467788888888888888776
No 48
>MTH00010 ND1 NADH dehydrogenase subunit 1; Validated
Probab=35.78 E-value=1.7e+02 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.500 Sum_probs=24.2
Q ss_pred hhHHhHhhHHHHHHhhcCcchhHHHHHHH
Q 026079 191 PGAYVLWYRPLYRAFRTESAMKFGWFFLF 219 (244)
Q Consensus 191 P~sf~~WYrplY~A~r~dss~~F~~FF~~ 219 (244)
-..++.|-|..+--+|-|...++.|--+.
T Consensus 265 ~~~~~~~ir~~~pR~R~dq~~~~~w~~ll 293 (311)
T MTH00010 265 LAFLFIWIRATFPRMRYDRLMNLTWKSFL 293 (311)
T ss_pred HHHHHHHHHhccHhhhHHHHHHHHHHHHH
Confidence 34567899999999999999999998754
No 49
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=35.29 E-value=1.9e+02 Score=21.67 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 145 QYVAFATYLGLFLCLLWNIVAVTT 168 (244)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~l~~~~ 168 (244)
.-++|.+=+++.+|+++|.+.+.+
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999987543
No 50
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.25 E-value=57 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 83 KKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 83 ~~k~~EL~rke~EL~rRE~eL~ 104 (244)
.+...++.+.++|+++.|+|++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 51
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=34.92 E-value=55 Score=25.80 Aligned_cols=15 Identities=60% Similarity=0.815 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 026079 84 KKEKELQAKEAELRR 98 (244)
Q Consensus 84 ~k~~EL~rke~EL~r 98 (244)
|+++|-.+|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555566666654
No 52
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=34.69 E-value=1.8e+02 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRRREQDVRRKEE 108 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~re~ 108 (244)
+|-++..+||.+-|+|+....+-|..+|+
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777776554444544443
No 53
>COG3671 Predicted membrane protein [Function unknown]
Probab=34.32 E-value=1.3e+02 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026079 140 HLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (244)
Q Consensus 140 ~~q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i 171 (244)
+-+++.-..|.++++-.++.+.=+++++++.+
T Consensus 19 ~~k~l~~vvY~Ly~~G~v~git~lvgvi~AYv 50 (125)
T COG3671 19 SGKKLPIVVYILYLLGAVTGITPLVGVIFAYV 50 (125)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55777888999999999999888888888876
No 54
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=33.61 E-value=94 Score=23.39 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhCCC
Q 026079 81 DLKKKEKELQAKEAELRRRE--QDVRRKEEAAARAGIV 116 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE--~eL~~re~~~~~~g~~ 116 (244)
+|.+..++|++..++++++| +-+..-.+-++..|+.
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56667777776655554433 2233333345555643
No 55
>PHA02148 hypothetical protein
Probab=33.53 E-value=1.5e+02 Score=23.43 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 026079 97 RRREQDVRRKEEAA 110 (244)
Q Consensus 97 ~rRE~eL~~re~~~ 110 (244)
.+||.||++.|.++
T Consensus 58 ~~R~NEL~~HE~Ai 71 (110)
T PHA02148 58 KSRENELRRHEAAI 71 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665443
No 56
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=33.51 E-value=94 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=14.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 026079 77 DTAADLKKKEKELQAKEAELRR 98 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL~r 98 (244)
..+....+++.++..|++||++
T Consensus 67 e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777754
No 57
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.12 E-value=96 Score=27.11 Aligned_cols=26 Identities=12% Similarity=0.473 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
.+|.+.+.+++|-.+.++++|++|..
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LEl 43 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLEL 43 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888877753
No 58
>PLN03181 glycosyltransferase; Provisional
Probab=32.81 E-value=53 Score=32.50 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-hCCCCCcCCCCC------CCCc
Q 026079 78 TAADLKKKEKELQAKEAELRRREQDV------RRKEEAAAR-AGIVLEEKNWPP------FFPI 128 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL------~~re~~~~~-~g~~~~~~NwPp------~~P~ 128 (244)
+-++..+|-+|++|+.+-|+||-+|- +.||+.++. +|......-||- |-||
T Consensus 334 ~~e~~~~~y~~~er~~~~lrrrhae~~~~~y~~~re~~~~~~~~~G~g~~R~PfvTHF~GC~pC 397 (453)
T PLN03181 334 RLDNITERYLEMEREDATLRRRHAEKVSERYAAFREEALKGPAGGGKGSWRRPFVTHFTGCQPC 397 (453)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhhhhhhhhhhhhhhhhhccCCCCCCCCccCcccccccCcccc
Confidence 34556666677776666676665553 225555542 221122345773 6688
No 59
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=32.12 E-value=1.2e+02 Score=23.22 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhHHHHHHHHHH
Q 026079 179 WFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLL 222 (244)
Q Consensus 179 f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F~~FF~~~~~ 222 (244)
.+++.+|++...++.|.-==.+.|++-+-+ +.+.|+++|++
T Consensus 22 ~~l~~~YLlVvP~~l~~wm~~RWy~~~~~E---r~~~y~lvF~F 62 (81)
T PF10716_consen 22 AALAGLYLLVVPLILYFWMNKRWYVMSSFE---RLFMYFLVFLF 62 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 468899976655555443344667776666 44555554444
No 60
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=31.79 E-value=3.2e+02 Score=23.23 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=24.4
Q ss_pred hCCCCCcCCCC--CC-CCccccccccchhHhHHHHHHHHHH
Q 026079 113 AGIVLEEKNWP--PF-FPIIHHDIANEIPIHLQRLQYVAFA 150 (244)
Q Consensus 113 ~g~~~~~~NwP--p~-~P~~y~dI~~EIP~~~q~~v~~~y~ 150 (244)
.||++-.++.| |+ +--+-.||.+|-..-.++ .+..+.
T Consensus 3 ~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~-~y~~w~ 42 (177)
T PF04144_consen 3 NNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKR-AYYLWL 42 (177)
T ss_pred CCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHH-HHHHHH
Confidence 37876666666 85 678888998888555554 444444
No 61
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=31.75 E-value=5.9e+02 Score=26.21 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=23.7
Q ss_pred cccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 129 IHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAV 166 (244)
Q Consensus 129 ~y~dI~~EIP~~~q~~v~~~y~~wl~~~~~L~~N~l~~ 166 (244)
-+.++.+++-...++..+..+..-++.+++++..+++.
T Consensus 553 ~~~s~~~~~~~~~~~~~~~~~~~~i~~ii~ili~l~~i 590 (679)
T TIGR01654 553 HLSSVNDIVQEDIDEIQDALTNLNILFILFALISLSII 590 (679)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666667777666653
No 62
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=31.20 E-value=44 Score=33.45 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~r 106 (244)
++++|-|||+++-+||++...+|++|
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 44556666666666666554455443
No 63
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.90 E-value=96 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026079 83 KKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 83 ~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
.+.++|+++.++||++.|.|+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666665555543
No 64
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.33 E-value=1e+02 Score=29.63 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 026079 88 ELQAKEAEL 96 (244)
Q Consensus 88 EL~rke~EL 96 (244)
+|+|+++||
T Consensus 236 slkRt~EeL 244 (365)
T KOG2391|consen 236 SLKRTEEEL 244 (365)
T ss_pred HHHhhHHHH
Confidence 333444443
No 65
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=29.80 E-value=1.1e+02 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL 103 (244)
+.++-++++++-++|++.+++|
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444
No 66
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=29.66 E-value=82 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhHHhHhhHHH
Q 026079 180 FLAIIYFIAGVPGAYVLWYRPL 201 (244)
Q Consensus 180 ~laily~ilg~P~sf~~WYrpl 201 (244)
+.++++++++..++.+.|.|.+
T Consensus 6 i~ni~~lilf~~~a~~I~~R~v 27 (66)
T PF13061_consen 6 IFNIIWLILFLIVAIFIWLRKV 27 (66)
T ss_pred ehHHHHHHHHHHHHHHheeeec
Confidence 3455555666666666666653
No 67
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.47 E-value=57 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=8.7
Q ss_pred cccccchhHhHHHHHH
Q 026079 131 HDIANEIPIHLQRLQY 146 (244)
Q Consensus 131 ~dI~~EIP~~~q~~v~ 146 (244)
||+++|+|...+++.-
T Consensus 26 HDLaEdLP~~w~~i~~ 41 (66)
T PF05082_consen 26 HDLAEDLPTNWEEIPE 41 (66)
T ss_dssp HHHHHCTTTTGGGHHH
T ss_pred HHHHHccchhHHHHHH
Confidence 5566666655554443
No 68
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.86 E-value=1.2e+02 Score=30.53 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCCCCcCCCCC-------CCCccccccccch
Q 026079 80 ADLKKKEKELQAKEAELRRREQDVRR-KEEAAARAGIVLEEKNWPP-------FFPIIHHDIANEI 137 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~-re~~~~~~g~~~~~~NwPp-------~~P~~y~dI~~EI 137 (244)
+...+..+|+.||++|+.|..++.+. -+.+++..|+. ..|-.. -.|-+|..|...|
T Consensus 134 ~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~--G~nir~ELl~l~~~LP~~~~~i~~~i 197 (507)
T PF05600_consen 134 AKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIK--GENIREELLELVKELPSLFDEIVEAI 197 (507)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc--cchhHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566777788888888776666543 34557777754 345432 3466666666666
No 69
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.50 E-value=3.5e+02 Score=23.33 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 026079 163 IVAVTTAWIK 172 (244)
Q Consensus 163 ~l~~~~~~i~ 172 (244)
++..+..+++
T Consensus 95 ~~~gi~~~f~ 104 (206)
T PF06570_consen 95 LLFGIMGFFS 104 (206)
T ss_pred HHHHHHHHHh
Confidence 3333444443
No 70
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=28.37 E-value=1.6e+02 Score=23.53 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRR 98 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~r 98 (244)
++|+.++.+|.+.++|++-
T Consensus 33 e~Lk~ke~~LRk~eqE~dS 51 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDS 51 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777643
No 71
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=28.26 E-value=3.4e+02 Score=27.53 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHH
Q 026079 211 MKFGWFFLFYLLH 223 (244)
Q Consensus 211 ~~F~~FF~~~~~~ 223 (244)
..|+.++++|++-
T Consensus 456 wq~i~wmiiYll~ 468 (527)
T PF03142_consen 456 WQYIGWMIIYLLA 468 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555543
No 72
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=27.85 E-value=5.1e+02 Score=24.29 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhHHHHHHHH
Q 026079 141 LQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFY 220 (244)
Q Consensus 141 ~q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F~~FF~~~ 220 (244)
.|.+.+-=|.-|++..=++++ .+.|..|.+ ...+++.+.-.-+.-+|| =-|..++|..|+.+|=+..
T Consensus 98 ~r~i~yaRYIdWllttPllll-----~l~lla~~~----~~ti~~~v~ad~~~iv~~----laaa~~~~tykW~~y~ig~ 164 (285)
T COG5524 98 YRQIYYARYIDWLLTTPLLLL-----YLGLLAGTS----LWTIAGVVAADIIMIVTG----LAAALTHSTYKWAYYAIGA 164 (285)
T ss_pred eehhhHHHHHHHHHhhhHHHH-----HHHHhcCCc----HHHHHHHHHHHHHHHHHH----HHHHhhchhhhHHHHHHHH
Confidence 446667778899865443332 122222322 345555555555555566 3355566777887777766
Q ss_pred HHHHHHHHhhhccC
Q 026079 221 LLHIGFCIFASVAP 234 (244)
Q Consensus 221 ~~~i~f~v~~aiG~ 234 (244)
..+++.+.....+.
T Consensus 165 ~a~lvvl~~l~~~~ 178 (285)
T COG5524 165 AAFLVVLAVLVTGF 178 (285)
T ss_pred HHHHHHHHHHHhhh
Confidence 66665555444443
No 73
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=27.81 E-value=58 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 78 TAADLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
+.++-+...++|..||.||.|.-.+|..
T Consensus 8 s~eew~~Ar~~LL~~EKeltR~~dalaa 35 (211)
T PF05988_consen 8 SREEWLAARDALLAREKELTRARDALAA 35 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677777664444543
No 74
>PRK08319 cobalt transport protein CbiM; Validated
Probab=27.63 E-value=4.3e+02 Score=23.35 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHH
Q 026079 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYR 203 (244)
Q Consensus 143 ~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~ 203 (244)
-+.-+++.-|+...+..+..++-+ .++..+|...++.-++-+.+.....-.+.||.+++
T Consensus 74 ~l~~lllGp~~a~l~~~i~L~~qa--l~fg~Ggl~~lG~N~l~m~~~~~~~~y~~~~~~~~ 132 (224)
T PRK08319 74 GLGAILFGPAVTAVLGAIVLLFQA--LLLAHGGLTTLGANVFSMAIVGPFVGYLVYKLLRK 132 (224)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 355666666665544333333321 12244555666666665544333444455666665
No 75
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.53 E-value=1.4e+02 Score=27.80 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026079 86 EKELQAKEAELRRREQDVR 104 (244)
Q Consensus 86 ~~EL~rke~EL~rRE~eL~ 104 (244)
.+||+..++||+++|++++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555543
No 76
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=26.84 E-value=83 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 76 LDTAADLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 76 ~~~~~~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
.-+-++|++-++|+..||+||+.+.++|++
T Consensus 342 ~yTeEEL~~fE~e~A~ke~El~~ka~~lqq 371 (442)
T KOG3866|consen 342 VYTEEELQQFEREYAQKEQELQHKAEALQQ 371 (442)
T ss_pred cccHHHHHHHHHHHHHHHHHHhchHHHhhC
Confidence 445678888888888888888877777654
No 77
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.48 E-value=1.3e+02 Score=23.61 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
+..++.+.+..++.+|+.++.+|+.
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666555555543
No 78
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.35 E-value=2e+02 Score=22.81 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
-++++.++|+++.++|++.++.|+.
T Consensus 80 ~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 80 LASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777666665654
No 79
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=26.30 E-value=38 Score=31.59 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 86 EKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 86 ~~EL~rke~EL~rRE~eL~~re 107 (244)
|||++.-|+||+.||.++++.+
T Consensus 160 ~eE~eEVe~el~~~~~~~~~~~ 181 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDRLE 181 (294)
T ss_pred hhhHHHHHHHHHhccchhhhhh
Confidence 6777777777777777776643
No 80
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.10 E-value=2e+02 Score=21.72 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 026079 92 KEAELRRREQDVRR 105 (244)
Q Consensus 92 ke~EL~rRE~eL~~ 105 (244)
.++||++.|+||+.
T Consensus 12 Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 12 LKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444455543
No 81
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=25.73 E-value=1.5e+02 Score=26.87 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 84 KKEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 84 ~k~~EL~rke~EL~rRE~eL~~re 107 (244)
++++++...|++.++|.+++++.+
T Consensus 71 k~e~~m~~Lea~VEkrD~~IQqLq 94 (272)
T KOG4552|consen 71 KREQLMRTLEAHVEKRDEVIQQLQ 94 (272)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444433
No 82
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.69 E-value=1.4e+02 Score=28.78 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 026079 93 EAELRRREQDVR 104 (244)
Q Consensus 93 e~EL~rRE~eL~ 104 (244)
.++|+|||+||+
T Consensus 234 q~slkRt~EeL~ 245 (365)
T KOG2391|consen 234 QESLKRTEEELN 245 (365)
T ss_pred HHHHHhhHHHHH
Confidence 334455555554
No 83
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=25.52 E-value=3.4e+02 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.532 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhh
Q 026079 210 AMKFGWFFLFYLLHIGFCIFAS 231 (244)
Q Consensus 210 s~~F~~FF~~~~~~i~f~v~~a 231 (244)
+..|.|-|.+..+-+++++..+
T Consensus 146 ~~~~gwSf~la~~a~~~~l~a~ 167 (172)
T PF13903_consen 146 SYSYGWSFWLAWVAFILLLLAG 167 (172)
T ss_pred eEEECHHHHHHHHHHHHHHHHH
Confidence 3478888887777777776654
No 84
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=25.51 E-value=1.6e+02 Score=26.54 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 026079 85 KEKELQAKEAEL 96 (244)
Q Consensus 85 k~~EL~rke~EL 96 (244)
..+||.|+|+++
T Consensus 24 A~EElRk~eeqi 35 (214)
T PF07795_consen 24 ANEELRKREEQI 35 (214)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 85
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.44 E-value=1.3e+02 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 026079 82 LKKKEKELQAKEAELRR-REQDVRR 105 (244)
Q Consensus 82 l~~k~~EL~rke~EL~r-RE~eL~~ 105 (244)
+++||-.+|++|=.++. |||||+.
T Consensus 521 ~qekQiq~Ek~ELkmd~lrerelre 545 (641)
T KOG3915|consen 521 AQEKQIQLEKTELKMDFLRERELRE 545 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555554 6776653
No 86
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=25.41 E-value=80 Score=25.32 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 026079 80 ADLKKKEKE 88 (244)
Q Consensus 80 ~~l~~k~~E 88 (244)
.++.++.+|
T Consensus 79 ~e~~q~~ee 87 (105)
T PF11214_consen 79 VELKQKQEE 87 (105)
T ss_pred HHHHHHHHH
Confidence 344444443
No 87
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.30 E-value=1e+02 Score=23.35 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~re 107 (244)
+-.+..+||++.|+||+...++.+-++
T Consensus 8 En~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 8 ENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 444556677777889987666655443
No 88
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.10 E-value=2.3e+02 Score=30.67 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRR 98 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~r 98 (244)
+..+-+|+|.|||.|+++
T Consensus 1106 et~rlre~L~rke~E~Qa 1123 (1226)
T KOG4279|consen 1106 ETERLREILDRKEREYQA 1123 (1226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555566666666554
No 89
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=25.04 E-value=1.7e+02 Score=23.90 Aligned_cols=44 Identities=20% Similarity=0.526 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCc--chhHHHHHHHHHHHHHHHH
Q 026079 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTES--AMKFGWFFLFYLLHIGFCI 228 (244)
Q Consensus 178 ~f~laily~ilg~P~sf~~WYrplY~A~r~ds--s~~F~~FF~~~~~~i~f~v 228 (244)
.++...|-+++++-+-.+.|||. .|- .|++++++..+. -++.||
T Consensus 62 iffavcI~l~~~s~~lLI~WYR~------gdl~Pkfr~li~~~~~~-ivllci 107 (118)
T PF10856_consen 62 IFFAVCILLICISAILLIFWYRQ------GDLDPKFRYLIYYNCFS-IVLLCI 107 (118)
T ss_pred EehHHHHHHHHHHHHhheeehhc------CCCChhHHHHHHHHHHH-HHHHHH
Confidence 34444555677777888899996 554 356666666543 333444
No 90
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=24.99 E-value=1.4e+02 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026079 85 KEKELQAKEAELRRRE 100 (244)
Q Consensus 85 k~~EL~rke~EL~rRE 100 (244)
-+++|+++|.|-++++
T Consensus 44 LaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 44 LAKAIEKEEREKKKKA 59 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456665555544443
No 91
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=24.94 E-value=55 Score=30.53 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 77 DTAADLKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL~rRE~eL 103 (244)
+.++|+++-|+||.++|.|+++.|+.+
T Consensus 158 ~~~eE~eEVe~el~~~~~~~~~~~~~~ 184 (294)
T KOG2881|consen 158 EGQEELEEVEAELAKREDELDRLEEGL 184 (294)
T ss_pred cchhhHHHHHHHHHhccchhhhhhhcC
Confidence 345677777777777777777655544
No 92
>PHA01750 hypothetical protein
Probab=24.76 E-value=94 Score=23.12 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026079 89 LQAKEAELRRREQDV 103 (244)
Q Consensus 89 L~rke~EL~rRE~eL 103 (244)
++.|.-+|+++-.|+
T Consensus 54 ~kikqDnl~~qv~ei 68 (75)
T PHA01750 54 LKIKQDELSRQVEEI 68 (75)
T ss_pred HHHhHHHHHHHHHHH
Confidence 333333333333333
No 93
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=24.63 E-value=4.6e+02 Score=26.15 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchh
Q 026079 146 YVAFATYLGLFLCLLWNIVAVT--TAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMK 212 (244)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~l~~~--~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~ 212 (244)
|....+.|..++++..+++=.+ ...+...|....-+-=+|.++-+-+.|..-|-.|-+-+..++-|+
T Consensus 25 k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy 93 (491)
T PF03219_consen 25 KFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555566777777778777643 112222233333333334444333444555666666665565443
No 94
>PF00146 NADHdh: NADH dehydrogenase; InterPro: IPR001694 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 1 NADH:ubiquinone oxidoreductase [, ]. Among the many polypeptide subunits that make up complex I, there are fifteen which are located in the membrane part, seven of which are encoded by the mitochondrial and chloroplast genomes of most species. The most conserved of these organelle-encoded subunits is known as subunit 1 (gene ND1 in mitochondrion, and NDH1 in chloroplast) and seems to contain the ubiquinone binding site. The ND1 subunit is highly similar to subunit 4 of Escherichia coli formate hydrogenlyase (gene hycD), subunit C of hydrogenase-4 (gene hyfC). Paracoccus denitrificans NQO8 and Escherichia coli nuoH NADH-ubiquinone oxidoreductase subunits also belong to this family []. This entry also includes the archaeal F420H2 oxidoreductase subunit H (FPO). FPO shuttles electrons from F420H2, via FAD and iron-sulphur (Fe-S) centres, to quinones in the F420H2:heterodisulphide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=24.59 E-value=3.3e+02 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=25.8
Q ss_pred hhhhHHhHhhHHHHHHhhcCcchhHHHHHHH
Q 026079 189 GVPGAYVLWYRPLYRAFRTESAMKFGWFFLF 219 (244)
Q Consensus 189 g~P~sf~~WYrplY~A~r~dss~~F~~FF~~ 219 (244)
..-...+.|-|-.+--+|-|+..++.|-.+.
T Consensus 266 ~~~~~~~~~ir~~~pR~R~d~~~~~~W~~~l 296 (311)
T PF00146_consen 266 LIVMFIFVWIRASFPRFRYDQLMRFCWKILL 296 (311)
T ss_pred HHHHHHHHHHHhhhccccchhhHHhHHHHHH
Confidence 4445667899999999999999999998763
No 95
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=24.51 E-value=1.6e+02 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 77 DTAADLKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL~rRE~eL 103 (244)
.+.++|.++|+||.|...+|.+..|+|
T Consensus 14 ~Ar~~LL~~EKeltR~~dalaa~RR~L 40 (211)
T PF05988_consen 14 AARDALLAREKELTRARDALAAERRRL 40 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344577778888877777776655544
No 96
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.46 E-value=2e+02 Score=21.59 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
+..++-+||.++++.|++|=+-|.
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLE 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655544444
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=24.35 E-value=1.5e+02 Score=29.36 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 026079 97 RRREQDVRRKE 107 (244)
Q Consensus 97 ~rRE~eL~~re 107 (244)
+.|++||++|+
T Consensus 213 q~r~~ela~r~ 223 (499)
T COG4372 213 QARTEELARRA 223 (499)
T ss_pred HHHHHHHHHHH
Confidence 33444555444
No 98
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.94 E-value=1.7e+02 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDVRRK 106 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL~~r 106 (244)
+.++.++|+++-++|++..+.|...
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAF 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655544
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.84 E-value=1.7e+02 Score=28.95 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026079 89 LQAKEAELRRREQDVR 104 (244)
Q Consensus 89 L~rke~EL~rRE~eL~ 104 (244)
.+.+++||.+|++.++
T Consensus 212 ~q~r~~ela~r~aa~Q 227 (499)
T COG4372 212 AQARTEELARRAAAAQ 227 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 100
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.77 E-value=1.5e+02 Score=24.22 Aligned_cols=22 Identities=41% Similarity=0.589 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026079 84 KKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 84 ~k~~EL~rke~EL~rRE~eL~~ 105 (244)
+|+++++.+.++|+.+..+|+.
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEE 126 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 101
>PF12848 ABC_tran_2: ABC transporter
Probab=23.67 E-value=2.1e+02 Score=20.64 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026079 85 KEKELQAKEAELRRREQ 101 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~ 101 (244)
++++++..+++.++.+.
T Consensus 22 k~~~~~~~~~~~~~~~k 38 (85)
T PF12848_consen 22 KEERRERQERQYEKQQK 38 (85)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33333333333333333
No 102
>KOG4808 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.65 E-value=1e+02 Score=26.03 Aligned_cols=27 Identities=44% Similarity=0.640 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCC
Q 026079 87 KELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNW 122 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~Nw 122 (244)
+|-..||+||+ +++|| .+|.+...+|+
T Consensus 104 ReWA~rea~le-----vkrRE----~aglpl~spn~ 130 (151)
T KOG4808|consen 104 REWALREAELE-----VKRRE----AAGLPLMSPNC 130 (151)
T ss_pred HHHHHHHHHHH-----HHHHH----hcCCCccCcCc
Confidence 35555666554 56666 34766555553
No 103
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.56 E-value=1.5e+02 Score=26.67 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026079 80 ADLKKKEKELQAKEAELRRREQD 102 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~e 102 (244)
+|+.+.++||++++.+|++.+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~ 180 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKK 180 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666554443
No 104
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.41 E-value=1.6e+02 Score=30.76 Aligned_cols=38 Identities=18% Similarity=0.523 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhHHHHHHHHHHH
Q 026079 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLH 223 (244)
Q Consensus 178 ~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F~~FF~~~~~~ 223 (244)
.|-|=.|| -+++--|-+|..+|-. .+.|-+||++..+-
T Consensus 48 ~~r~e~~~-------p~wl~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (697)
T PF09726_consen 48 EFRFEYLW-------PFWLLLRSVYDSFKYQ-GLAFSVFFVCIAFT 85 (697)
T ss_pred hhHHHHHH-------HHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Confidence 35556666 3455567777777765 46677777655443
No 105
>PRK11637 AmiB activator; Provisional
Probab=23.36 E-value=1.7e+02 Score=28.15 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=9.3
Q ss_pred chhHhHHHHHHHHHHHHH
Q 026079 136 EIPIHLQRLQYVAFATYL 153 (244)
Q Consensus 136 EIP~~~q~~v~~~y~~wl 153 (244)
+|-.....+-.++-..|.
T Consensus 118 ~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 118 QQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445566666665
No 106
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.22 E-value=1.9e+02 Score=22.59 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
+.++.++|+++-++|++..+.|.
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 84 LEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444
No 107
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=22.93 E-value=95 Score=29.84 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 86 EKELQAKEAELRRREQDVRRKEEA 109 (244)
Q Consensus 86 ~~EL~rke~EL~rRE~eL~~re~~ 109 (244)
++||.+-|+|+..||+||+...++
T Consensus 345 eEEL~~fE~e~A~ke~El~~ka~~ 368 (442)
T KOG3866|consen 345 EEELQQFEREYAQKEQELQHKAEA 368 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHH
Confidence 566666666666666666655544
No 108
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=22.88 E-value=2.5e+02 Score=26.20 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 142 QRLQYVAFATYLGLFLCLLWNIVA 165 (244)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~l~ 165 (244)
++..|+...+||+.+-.||--++.
T Consensus 6 ~~~~kl~~~~~~~~~~~~~~~~~~ 29 (279)
T PF07271_consen 6 RRKKKLFLLAWLLFVSVLFSALIV 29 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888765555554443
No 109
>COG5346 Predicted membrane protein [Function unknown]
Probab=22.65 E-value=4.4e+02 Score=21.94 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 026079 155 LFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIA 188 (244)
Q Consensus 155 ~~~~L~~N~l~~~~~~i~g~~~~~f~laily~il 188 (244)
+.++|+|-+.-.+++-. -+++.|.+|..+++.
T Consensus 97 Fgi~LVvsi~~~tla~~--~~Gtv~alAlaFv~~ 128 (136)
T COG5346 97 FGIFLVVSIFPKTLASL--AGGTVFALALAFVIG 128 (136)
T ss_pred HHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHh
Confidence 34455554443333322 234457778777654
No 110
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.55 E-value=5.9e+02 Score=23.16 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 026079 139 IHLQRLQYVAFATYLGLF 156 (244)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~ 156 (244)
+++|+.++.+|.....+.
T Consensus 141 E~y~k~~k~~~~gi~aml 158 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAML 158 (230)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 566777788777665443
No 111
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=22.44 E-value=1.2e+02 Score=31.08 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 140 HLQRLQYVAFATYLGLFLCLLWNIVAVTTA 169 (244)
Q Consensus 140 ~~q~~v~~~y~~wl~~~~~L~~N~l~~~~~ 169 (244)
..+.+..++|.+|++.+..+++|++.++..
T Consensus 583 ~~~~~~~il~~~y~~i~~ilLlNlLIAmm~ 612 (743)
T TIGR00870 583 FTEFVGLLLFGAYNVIMYILLLNMLIAMMG 612 (743)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999987653
No 112
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.37 E-value=1.5e+02 Score=21.56 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=14.8
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHH
Q 026079 72 IDIPLDTAADLKKKEKELQAKEAELR 97 (244)
Q Consensus 72 ~~~~~~~~~~l~~k~~EL~rke~EL~ 97 (244)
|.+|..+.+|...-..++.+|-+++.
T Consensus 27 VpiPv~~dee~~~L~s~~~~kLe~ma 52 (61)
T PF07131_consen 27 VPIPVVTDEEFHTLSSQLSQKLERMA 52 (61)
T ss_pred eccccccHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555555555443
No 113
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.32 E-value=1.4e+02 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRRKEE 108 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~re~ 108 (244)
+++++.++|.+.-+.|+++.++|++||.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444333334444444555543
No 114
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=22.27 E-value=2.9e+02 Score=20.56 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhHHhHhhHH
Q 026079 179 WFLAIIYFIAGVPGAYVLWYRP 200 (244)
Q Consensus 179 f~laily~ilg~P~sf~~WYrp 200 (244)
...+++-+++..|..++-|||+
T Consensus 46 ~~~~~~~i~~~~p~~~~g~~k~ 67 (93)
T PF12666_consen 46 DIASWIMIPIALPFAFLGFFKK 67 (93)
T ss_pred HHHHHHHHHHHHHHHHhHhhhh
Confidence 3556666777888888888887
No 115
>COG4125 Predicted membrane protein [Function unknown]
Probab=22.19 E-value=4.8e+02 Score=22.10 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHh---cCCC--ch-----HHHHHHHHHHhhhhhHHhHhhH--HHHHHhhcCcchhHHHHH
Q 026079 151 TYLGLFLCLLWNIVAV-TTAWI---KGEG--VK-----IWFLAIIYFIAGVPGAYVLWYR--PLYRAFRTESAMKFGWFF 217 (244)
Q Consensus 151 ~wl~~~~~L~~N~l~~-~~~~i---~g~~--~~-----~f~laily~ilg~P~sf~~WYr--plY~A~r~dss~~F~~FF 217 (244)
.-+..+++.+||++=- ++=.. .+-. .+ ..++=+-.++.++|. .-||- .|..|+.-| ..++.||
T Consensus 46 ~i~~atvAm~WN~vyN~lFd~~~rr~~~~rT~~vRv~HAv~FE~gliv~lvP~--iAw~L~isL~eAl~Ld--ig~~lff 121 (149)
T COG4125 46 TILSATVAMIWNFVYNLLFDRAERRMGTRRTLAVRVAHAVGFELGLIVILVPL--IAWWLGISLLEALVLD--IGLILFF 121 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHhhHH--HHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3345678899999843 32211 1111 11 123333334444553 45554 578888888 7888999
Q ss_pred HHHHH
Q 026079 218 LFYLL 222 (244)
Q Consensus 218 ~~~~~ 222 (244)
+.|-+
T Consensus 122 l~Ytf 126 (149)
T COG4125 122 LPYTF 126 (149)
T ss_pred HHHHH
Confidence 87743
No 116
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=22.06 E-value=5.7e+02 Score=22.83 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHh--hHHHH
Q 026079 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLW--YRPLY 202 (244)
Q Consensus 143 ~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~W--YrplY 202 (244)
-+.-+++.-|......++.+++-+++ +..++...++.-++ ..+.+..++.| ||.++
T Consensus 72 ~l~~lllGp~~a~la~~l~lllqal~--fg~GGi~~LG~N~l--~ma~v~~~~~y~i~r~l~ 129 (230)
T PRK11909 72 TLIAILLGPWAAVISISVALVIQALL--FGDGGITAIGANCF--NMAFVLPFVGYYVYKLLS 129 (230)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH--HcCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34566677676666666666655332 23344444444444 34444444433 44443
No 117
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=21.82 E-value=99 Score=30.08 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=10.4
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Q 026079 144 LQYVAFA--TYLGLFLCLLWNIVAV 166 (244)
Q Consensus 144 ~v~~~y~--~wl~~~~~L~~N~l~~ 166 (244)
.++..|. .+| -++.=.++.|+.
T Consensus 343 ~v~~~y~~aa~l-~~lLealp~Ia~ 366 (428)
T KOG2668|consen 343 EVYQAYAQAAYL-RTLLEALPMIAA 366 (428)
T ss_pred HHHHHhhhhHHH-HHHHHHHHHHHH
Confidence 4555555 333 223345566654
No 118
>CHL00032 ndhA NADH dehydrogenase subunit 1
Probab=21.73 E-value=7.2e+02 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.9
Q ss_pred hHHhHhhHHHHHHhhcCcchhHHHHHHH
Q 026079 192 GAYVLWYRPLYRAFRTESAMKFGWFFLF 219 (244)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~F~~FF~~ 219 (244)
..++.|-|-.+--+|-|+..++.|-.+.
T Consensus 318 ~~~~i~ir~~~pR~R~Dq~~~~~Wk~ll 345 (363)
T CHL00032 318 LFISITTRWTLPRLRMDQLLNLGWKFLL 345 (363)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 3456899999999999999999998854
No 119
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.49 E-value=2.4e+02 Score=25.09 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 87 KELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
.||.+-|+|+.-..+=|..||+++
T Consensus 51 ~EL~kvEeEI~TLrqVLaAKerH~ 74 (208)
T KOG4010|consen 51 TELAKVEEEIVTLRQVLAAKERHA 74 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666544444455555543
No 120
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.47 E-value=1.1e+02 Score=30.85 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026079 88 ELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 88 EL~rke~EL~rRE~eL~~re 107 (244)
.-..|-+|+++|+.+|.+|=
T Consensus 373 d~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 373 DAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33345566667777776554
No 121
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=21.46 E-value=5.4e+02 Score=26.57 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=23.0
Q ss_pred hHHhHhhHHHHHHhhcCcchhHHHH-HHHHHHHHHHHHhh
Q 026079 192 GAYVLWYRPLYRAFRTESAMKFGWF-FLFYLLHIGFCIFA 230 (244)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~F~~F-F~~~~~~i~f~v~~ 230 (244)
.++-+|. .+=+.++.....+++.| ++.|++=.+...+.
T Consensus 407 eg~hl~~-~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Is 445 (610)
T KOG4193|consen 407 EGFHLYL-LLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVS 445 (610)
T ss_pred HHHHHHH-HHHHHhccccchHHHHHHHHHhhhhHHHHhhe
Confidence 3455665 77888888876666655 45565554444333
No 122
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=21.45 E-value=5.9e+02 Score=27.85 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhhhhhHHhHhh
Q 026079 177 KIWFLAIIYFIAGVPGAYVLWY 198 (244)
Q Consensus 177 ~~f~laily~ilg~P~sf~~WY 198 (244)
+..+.+++|+-+-+|+.-++-|
T Consensus 358 kgY~~~~iwLqlWppLfAIIN~ 379 (942)
T PRK13735 358 KGYVFALMWLQSWPLLYAILNS 379 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888988888888777665
No 123
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.32 E-value=1.8e+02 Score=24.65 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRR 98 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~r 98 (244)
|+++..+||+++|.|++.
T Consensus 162 ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEA 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 124
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.22 E-value=2.3e+02 Score=24.51 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
|+.+-..++++-..||+.||.+.+..+++.
T Consensus 103 dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 103 DLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666555433
No 125
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.91 E-value=2.6e+02 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 81 DLKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
+++++.++++++-++|+.+.++|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 126
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.91 E-value=1.5e+02 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026079 85 KEKELQAKEAELRRREQDVRRKEEAAAR 112 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~eL~~re~~~~~ 112 (244)
..+-|+.+.++|+++-++|++.++.+..
T Consensus 77 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 77 MYELASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888776665543
No 127
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.75 E-value=2.4e+02 Score=17.95 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026079 96 LRRREQDVRRK 106 (244)
Q Consensus 96 L~rRE~eL~~r 106 (244)
|+||.++|+.+
T Consensus 13 Lrrr~eqLK~k 23 (32)
T PF02344_consen 13 LRRRREQLKHK 23 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33433344443
No 128
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.62 E-value=3.1e+02 Score=21.81 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026079 82 LKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
+.++.++|+++-+||++..+.|++
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666555555543
No 129
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.54 E-value=6e+02 Score=22.48 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhH-HhHhhHHHHHHhhcC
Q 026079 179 WFLAIIYFIAGVPGA-YVLWYRPLYRAFRTE 208 (244)
Q Consensus 179 f~laily~ilg~P~s-f~~WYrplY~A~r~d 208 (244)
+.+.+.++++.++.. .-..+|..++..|.+
T Consensus 132 l~~~i~~~v~~i~~i~~~~~~~K~~k~i~p~ 162 (248)
T PF11368_consen 132 LFIIIPFLVLLILTIILQKFLRKTIKKIRPE 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 444444444444332 335678888888754
No 130
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.06 E-value=7.3e+02 Score=23.26 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhcc
Q 026079 209 SAMKFGWFFLFYLLHIGFCIFASVA 233 (244)
Q Consensus 209 ss~~F~~FF~~~~~~i~f~v~~aiG 233 (244)
+.+++.|+.+..+.=++..+..+.|
T Consensus 194 ~~~~~l~~~~li~~Pl~li~la~~G 218 (340)
T PF12794_consen 194 HRLRYLWWPLLILAPLALIVLALLG 218 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788887777777666666555
Done!