BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026080
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
           Complex With Substrate
 pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
           (Re-Refined)
          Length = 289

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 141/209 (67%), Gaps = 5/209 (2%)

Query: 35  PQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECC 94
           P+      +FR+Y   G   + V   Y++ H +QT DFV + R +YG  +  +M+I E  
Sbjct: 23  PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81

Query: 95  ELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGL 154
            +L+D+VDESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGK++ L    G 
Sbjct: 82  GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGE 138

Query: 155 PQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213
           PQWAVVGDTFPVGC    S+V     F++NPD  +P ++TE G+Y   CGL+NV+MSWGH
Sbjct: 139 PQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGH 198

Query: 214 DDYMYLVAKENKTTLPSAALFIIRYHSFY 242
           D+Y+Y + K NK +LPS A ++IR+HSFY
Sbjct: 199 DEYLYQMMKFNKFSLPSEAFYMIRFHSFY 227


>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 246

 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 120/183 (65%), Gaps = 7/183 (3%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDESD   D P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 179
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     
Sbjct: 66  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 122

Query: 180 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239
           F++NPD  +P ++TE G Y   CGLD V+ SWGHD+Y Y V K NK +LP  A + IR+H
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 182

Query: 240 SFY 242
           SFY
Sbjct: 183 SFY 185


>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 240

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 10/183 (5%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDES      P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 179
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     
Sbjct: 63  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 119

Query: 180 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239
           F++NPD  +P ++TE G Y   CGLD V+ SWGHD+Y Y V K NK +LP  A + IR+H
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 179

Query: 240 SFY 242
           SFY
Sbjct: 180 SFY 182


>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
 pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
           Dimethyl Derivative Of Sulfaphenazole
 pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
           DICLOFENAC
          Length = 473

 Score = 27.3 bits (59), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 124 RKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKEN 183
           R DY DE++L L   +H+  ++L  P       W  V + FP    +   I  HK   +N
Sbjct: 168 RFDYKDEEFLKLMESLHENVELLGTP-------WLQVYNNFPALLDYFPGI--HKTLLKN 218

Query: 184 PDY 186
            DY
Sbjct: 219 ADY 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,803,616
Number of Sequences: 62578
Number of extensions: 411037
Number of successful extensions: 916
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)