Query 026080
Match_columns 244
No_of_seqs 127 out of 204
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 3E-112 7E-117 759.4 9.2 191 52-244 3-193 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 1.4E-97 3E-102 639.1 9.8 191 28-221 12-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.1 0.00039 8.4E-09 60.8 3.0 38 108-146 22-59 (179)
4 TIGR00277 HDIG uncharacterized 95.2 0.02 4.4E-07 40.0 3.0 29 209-239 49-77 (80)
5 smart00471 HDc Metal dependent 94.9 0.013 2.9E-07 42.2 1.4 38 110-147 3-45 (124)
6 TIGR00488 putative HD superfam 93.6 0.024 5.2E-07 46.9 0.6 38 109-146 6-47 (158)
7 PRK00106 hypothetical protein; 92.4 0.24 5.2E-06 49.9 5.5 87 91-240 332-422 (535)
8 PF01966 HD: HD domain; Inter 91.1 0.04 8.6E-07 40.6 -1.1 34 113-146 2-41 (122)
9 TIGR03319 YmdA_YtgF conserved 90.7 0.46 9.9E-06 47.3 5.6 88 91-241 311-402 (514)
10 COG4341 Predicted HD phosphohy 88.0 0.45 9.8E-06 42.3 2.9 46 101-147 20-65 (186)
11 TIGR01596 cas3_HD CRISPR-assoc 87.4 0.15 3.3E-06 41.3 -0.4 33 114-146 3-47 (177)
12 TIGR00295 conserved hypothetic 86.5 1.1 2.4E-05 37.7 4.4 29 211-241 61-89 (164)
13 PRK12705 hypothetical protein; 84.2 1.7 3.6E-05 43.7 5.1 68 112-240 324-395 (508)
14 COG2316 Predicted hydrolase (H 84.2 0.83 1.8E-05 41.0 2.6 55 86-146 28-86 (212)
15 cd00077 HDc Metal dependent ph 82.5 0.34 7.4E-06 35.3 -0.4 35 112-146 3-44 (145)
16 PF08668 HDOD: HDOD domain; I 81.1 1.7 3.8E-05 36.1 3.3 126 80-240 47-194 (196)
17 PRK12703 tRNA 2'-O-methylase; 72.4 3.4 7.5E-05 39.6 3.1 60 81-146 163-226 (339)
18 PF15608 PELOTA_1: PELOTA RNA 72.2 11 0.00024 30.6 5.5 55 64-122 16-78 (100)
19 PRK07152 nadD putative nicotin 68.0 2.1 4.5E-05 39.9 0.6 30 211-241 258-288 (342)
20 TIGR02621 cas3_GSU0051 CRISPR- 66.7 2.9 6.2E-05 44.5 1.4 37 110-146 674-716 (844)
21 PRK05007 PII uridylyl-transfer 63.4 14 0.00031 39.1 5.7 35 110-144 460-512 (884)
22 PRK10885 cca multifunctional t 55.1 4.4 9.6E-05 39.2 0.3 35 111-146 227-261 (409)
23 PRK12704 phosphodiesterase; Pr 53.2 11 0.00024 37.9 2.7 53 92-146 318-374 (520)
24 COG2206 c-di-GMP phosphodieste 51.4 9 0.0002 35.8 1.7 43 101-147 142-191 (344)
25 KOG4481 Uncharacterized conser 49.8 16 0.00034 32.9 2.9 33 84-127 113-145 (194)
26 PF06784 UPF0240: Uncharacteri 49.4 14 0.00031 32.3 2.5 34 83-127 113-146 (179)
27 COG1639 Predicted signal trans 49.1 17 0.00036 34.5 3.1 129 77-239 66-215 (289)
28 PRK03381 PII uridylyl-transfer 48.9 9.6 0.00021 39.8 1.6 35 111-145 420-457 (774)
29 PRK05092 PII uridylyl-transfer 48.5 6.4 0.00014 41.7 0.3 57 89-145 462-545 (931)
30 PRK01759 glnD PII uridylyl-tra 47.5 21 0.00045 37.8 3.8 35 110-144 435-487 (854)
31 TIGR03760 ICE_TraI_Pfluor inte 45.3 9.5 0.00021 34.2 0.8 36 112-147 68-122 (218)
32 PRK13480 3'-5' exoribonuclease 44.9 8.4 0.00018 36.4 0.5 33 116-148 167-201 (314)
33 PF13328 HD_4: HD domain; PDB: 42.8 12 0.00025 30.7 0.9 36 106-142 14-49 (153)
34 PRK08071 L-aspartate oxidase; 37.9 44 0.00095 32.8 4.2 73 73-146 415-508 (510)
35 PF04986 Y2_Tnp: Putative tran 37.3 7.7 0.00017 33.4 -1.0 34 206-243 144-177 (183)
36 COG3481 Predicted HD-superfami 36.8 25 0.00054 33.3 2.2 50 115-165 148-199 (287)
37 PRK00275 glnD PII uridylyl-tra 36.8 14 0.00029 39.4 0.5 36 110-145 459-512 (895)
38 COG1418 Predicted HD superfami 35.5 29 0.00063 31.0 2.3 38 111-148 36-77 (222)
39 PRK04374 PII uridylyl-transfer 35.1 20 0.00042 38.2 1.4 36 110-145 448-501 (869)
40 PRK00227 glnD PII uridylyl-tra 34.9 65 0.0014 33.8 5.0 37 110-146 379-418 (693)
41 COG0647 NagD Predicted sugar p 32.5 2.8E+02 0.006 25.9 8.2 97 84-203 48-171 (269)
42 COG2069 CdhD CO dehydrogenase/ 32.1 2.1E+02 0.0046 28.3 7.6 90 32-122 115-226 (403)
43 COG1713 Predicted HD superfami 31.6 27 0.00059 31.2 1.5 48 92-146 5-56 (187)
44 TIGR01693 UTase_glnD [Protein- 31.1 12 0.00025 39.2 -1.0 35 111-145 428-480 (850)
45 KOG1766 Enhancer of rudimentar 30.6 73 0.0016 26.3 3.7 54 35-104 10-68 (104)
46 PRK03059 PII uridylyl-transfer 30.5 24 0.00052 37.4 1.1 35 110-144 439-491 (856)
47 PF12477 TraW_N: Sex factor F 29.9 19 0.00042 23.6 0.2 11 157-167 21-31 (31)
48 COG4198 Uncharacterized conser 29.8 35 0.00077 33.7 2.0 49 95-143 349-405 (405)
49 PLN02892 isocitrate lyase 29.0 71 0.0015 33.1 4.1 70 76-145 338-462 (570)
50 COG1023 Gnd Predicted 6-phosph 28.1 80 0.0017 30.2 4.0 61 86-159 178-250 (300)
51 PF10305 Fmp27_SW: RNA pol II 27.9 27 0.00059 27.8 0.8 28 194-231 70-97 (103)
52 TIGR02692 tRNA_CCA_actino tRNA 27.2 36 0.00078 33.2 1.6 38 110-147 257-296 (466)
53 PTZ00100 DnaJ chaperone protei 27.0 1.9E+02 0.0041 24.0 5.6 52 71-129 41-96 (116)
54 PRK14068 exodeoxyribonuclease 26.4 1E+02 0.0022 23.7 3.6 40 85-124 3-43 (76)
55 TIGR02578 cas_TM1811_Csm1 CRIS 26.2 22 0.00048 36.7 -0.0 14 134-147 2-15 (648)
56 TIGR00691 spoT_relA (p)ppGpp s 25.7 47 0.001 34.5 2.2 35 108-144 16-51 (683)
57 TIGR01346 isocit_lyase isocitr 25.7 34 0.00074 35.1 1.2 40 107-146 386-441 (527)
58 PF10809 DUF2732: Protein of u 25.4 1.8E+02 0.0039 22.7 4.9 62 38-99 3-64 (77)
59 KOG3442 Uncharacterized conser 25.3 2.8E+02 0.006 23.9 6.3 63 56-121 19-88 (132)
60 PRK14064 exodeoxyribonuclease 25.2 1.1E+02 0.0024 23.4 3.6 41 85-125 3-44 (75)
61 KOG2155 Tubulin-tyrosine ligas 25.1 41 0.0009 34.5 1.6 18 120-137 373-390 (631)
62 TIGR03401 cyanamide_fam HD dom 24.0 37 0.00081 30.5 1.0 39 108-146 55-98 (228)
63 PF03656 Pam16: Pam16; InterP 24.0 28 0.00062 29.2 0.2 34 85-120 52-86 (127)
64 PRK13298 tRNA CCA-pyrophosphor 23.2 22 0.00047 35.1 -0.7 36 111-147 228-263 (417)
65 PHA00687 hypothetical protein 23.0 51 0.0011 24.1 1.4 13 225-237 8-20 (56)
66 COG3437 Response regulator con 21.8 1.8E+02 0.004 28.6 5.3 52 91-146 169-227 (360)
67 PRK11092 bifunctional (p)ppGpp 21.7 98 0.0021 32.5 3.6 53 90-144 23-76 (702)
68 PF12928 tRNA_int_end_N2: tRNA 21.2 41 0.00089 25.1 0.6 46 192-237 15-62 (72)
69 COG0132 BioD Dethiobiotin synt 21.1 75 0.0016 28.8 2.4 20 108-127 145-164 (223)
70 cd01282 HTH_MerR-like_sg3 Heli 20.8 4.2E+02 0.009 20.8 6.3 63 31-117 24-86 (112)
71 PF07514 TraI_2: Putative heli 20.7 29 0.00063 32.8 -0.4 51 97-147 49-121 (327)
72 PF08579 RPM2: Mitochondrial r 20.6 77 0.0017 26.8 2.1 20 217-236 47-66 (120)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=3.3e-112 Score=759.39 Aligned_cols=191 Identities=69% Similarity=1.199 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhCCCCC
Q 026080 52 ERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDED 131 (244)
Q Consensus 52 ~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~p~pD 131 (244)
+|+++|++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+||
T Consensus 3 ~~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~d 82 (253)
T PF05153_consen 3 EACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPD 82 (253)
T ss_dssp --HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-H
T ss_pred cHhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceecccc
Q 026080 132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 211 (244)
Q Consensus 132 W~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSW 211 (244)
|||||||||||||||++ |+++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+|||
T Consensus 83 W~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msW 160 (253)
T PF05153_consen 83 WMQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSW 160 (253)
T ss_dssp HHHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-S
T ss_pred hhhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecC
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHhhCCCCCChhHHHHHHhccccCC
Q 026080 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYGK 244 (244)
Q Consensus 212 gHDEYlY~Vlk~n~~tLP~eaL~mIRyHSFYp~ 244 (244)
|||||||+|||+|+||||+|||+||||||||||
T Consensus 161 gHDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypw 193 (253)
T PF05153_consen 161 GHDEYLYQVLKHNKSTLPEEALYMIRYHSFYPW 193 (253)
T ss_dssp SHHHHHHHHHHHCT----HHHHHHHHHTT-HHH
T ss_pred CchHHHHHHHHcccCccCHHHHHHHHHhccccc
Confidence 999999999999999999999999999999997
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=1.4e-97 Score=639.06 Aligned_cols=191 Identities=73% Similarity=1.293 Sum_probs=184.5
Q ss_pred ecCCCCCCCCCcccccCCCCcc-chhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCC
Q 026080 28 LDGGFLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDP 106 (244)
Q Consensus 28 ldg~f~~P~~~~~~~~FR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDP 106 (244)
.|--|+.|+.++++.+||+|++ +++||+||+.|||+||+|||||||++||++|+||++.+||||||||+||++||||||
T Consensus 12 v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDP 91 (204)
T KOG1573|consen 12 VDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDP 91 (204)
T ss_pred ccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCC
Confidence 3455999999999999999964 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCCCcceecccccccccccccCCCCCCCCeeEeccceecccccCCCcccc-cccccCCC
Q 026080 107 DLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHH-KYFKENPD 185 (244)
Q Consensus 107 D~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~-~~F~~NPD 185 (244)
|+|+|||+|||||||+||++||+.||||||||||||||||. |+|+||||||||||||||+|++||||+ ++|..|||
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD 168 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPD 168 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCC
Confidence 99999999999999999999999999999999999999995 588999999999999999999999997 99999999
Q ss_pred CCCCccccccCcccCCCCcceeccccCchhhHHHHH
Q 026080 186 YSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVA 221 (244)
Q Consensus 186 ~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vl 221 (244)
.+||+|||+.|||+++||||||+||||||||||+|+
T Consensus 169 ~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 169 INNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred CCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.08 E-value=0.00039 Score=60.81 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCcceeccccccccccc
Q 026080 108 LDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 108 ~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl 146 (244)
...+|++|+||||...++++.++++ .+.+|+||+|.++
T Consensus 22 e~Vs~leH~LQ~A~lA~~~Gad~el-vvAALLHDIGhll 59 (179)
T TIGR03276 22 EAVSQLEHALQCAQLAEAAGADDEL-IVAAFLHDIGHLL 59 (179)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHH-HHHHHHHhcchhh
Confidence 4589999999999999999866666 8999999999987
No 4
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.19 E-value=0.02 Score=40.00 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=23.6
Q ss_pred cccCchhhHHHHHhhCCCCCChhHHHHHHhc
Q 026080 209 MSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239 (244)
Q Consensus 209 mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyH 239 (244)
...+|.++=+.+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345777877888875 47999999999998
No 5
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.88 E-value=0.013 Score=42.21 Aligned_cols=38 Identities=32% Similarity=0.331 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHhhC---C--CCCcceecccccccccccc
Q 026080 110 EPQIEHLLQTAEAIRKDY---P--DEDWLHLTGLIHDLGKVLN 147 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d~---p--~pDW~qLtGliHDLGKvl~ 147 (244)
.+..+|.+++|..++.-. + +.+.+-++||+||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 456788888877765321 1 3467789999999999874
No 6
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=93.63 E-value=0.024 Score=46.90 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHHH----hhCCCCCcceeccccccccccc
Q 026080 109 DEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 109 d~~~i~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (244)
+.....|.+.+|...| +-++++++..++||+||+||.+
T Consensus 6 ~~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 6 DEHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3467899999887643 3346788999999999999953
No 7
>PRK00106 hypothetical protein; Provisional
Probab=92.36 E-value=0.24 Score=49.89 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=63.2
Q ss_pred HHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHH----HhhCCCCCcceecccccccccccccCCCCCCCCeeEeccceec
Q 026080 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAI----RKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (244)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEai----R~d~p~pDW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPv 166 (244)
.|++.+|-.|-.-++-+. ....|.+.+|... ++-+.++++.-+.||+||+||++..
T Consensus 332 ~e~~~~lg~l~~r~sy~q--nl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~------------------ 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQ--NVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDR------------------ 391 (535)
T ss_pred HHHHHHHHHHhhhccCCC--cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCc------------------
Confidence 467777777755544333 3679999998875 3445577899999999999998510
Q ss_pred ccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhHHHHHhhCCCCCChhHHHHHHhcc
Q 026080 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 167 GC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
.+ ..+|.+.=+.++++. .+|++-+.+|++|-
T Consensus 392 -----------------------------e~------------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH 422 (535)
T PRK00106 392 -----------------------------EV------------EGSHVEIGMEFARKY--KEHPVVVNTIASHH 422 (535)
T ss_pred -----------------------------cc------------cCChHHHHHHHHHHc--CCCHHHHHHHHHhC
Confidence 00 115888889999865 48999999999983
No 8
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=91.05 E-value=0.04 Score=40.60 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH---hhCC---CCCcceeccccccccccc
Q 026080 113 IEHLLQTAEAIR---KDYP---DEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 113 i~H~lQTAEaiR---~d~p---~pDW~qLtGliHDLGKvl 146 (244)
++|.+.+|+..+ +..+ +.+++.+.||+||+||..
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 567777776643 2222 557889999999999988
No 9
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.73 E-value=0.46 Score=47.33 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHhhhhcCCCCCCCCchHHHHHHHHHHH----HHhhCCCCCcceecccccccccccccCCCCCCCCeeEeccceec
Q 026080 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEA----IRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (244)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEa----iR~d~p~pDW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPv 166 (244)
.|++.+|..|---+....+ ...|.+.+|.. .++-+.+++...+.||+||+||++..
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~------------------ 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDH------------------ 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccch------------------
Confidence 4567777665433222221 46799888876 34445677888899999999997410
Q ss_pred ccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhHHHHHhhCCCCCChhHHHHHHhccc
Q 026080 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (244)
Q Consensus 167 GC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHSF 241 (244)
+ + -..|.++=+.+++.. .+|++.+.+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~~--~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKKY--KESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHHc--CCCHHHHHHHHHhCC
Confidence 0 0 025888888888764 589999999999963
No 10
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=88.02 E-value=0.45 Score=42.27 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=35.0
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceecccccccccccc
Q 026080 101 VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (244)
Q Consensus 101 VDeSDPD~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~ 147 (244)
-|++=--.-++|.+|+||+|-..-+||-..+| .-..|+||+|-+..
T Consensus 20 g~e~y~ge~VTq~eHaLQ~AtlAerdGa~~~l-VaaALLHDiGhl~~ 65 (186)
T COG4341 20 GDEGYSGEPVTQLEHALQCATLAERDGADTAL-VAAALLHDIGHLYA 65 (186)
T ss_pred cccccccCcchhhhhHHHHhHHHHhcCCcHHH-HHHHHHHhHHHHhh
Confidence 34443333478999999999999999854455 56789999999984
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=87.38 E-value=0.15 Score=41.29 Aligned_cols=33 Identities=39% Similarity=0.543 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHh----------hCC--CCCcceeccccccccccc
Q 026080 114 EHLLQTAEAIRK----------DYP--DEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 114 ~H~lQTAEaiR~----------d~p--~pDW~qLtGliHDLGKvl 146 (244)
+|++.||+..+. ..+ .++++-+.+++||+||+-
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 577777776542 111 357899999999999975
No 12
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=86.53 E-value=1.1 Score=37.75 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=23.4
Q ss_pred cCchhhHHHHHhhCCCCCChhHHHHHHhccc
Q 026080 211 WGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (244)
Q Consensus 211 WgHDEYlY~Vlk~n~~tLP~eaL~mIRyHSF 241 (244)
+.|.++=|.+|++ ..+|++.+.+|+.|.+
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~ 89 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFG 89 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhC
Confidence 3788999999986 4678888888888865
No 13
>PRK12705 hypothetical protein; Provisional
Probab=84.22 E-value=1.7 Score=43.73 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHH----hhCCCCCcceecccccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCC
Q 026080 112 QIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYS 187 (244)
Q Consensus 112 ~i~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~ 187 (244)
.+.|.+.+|..++ +-+-+++....+||+||+||... |.
T Consensus 324 vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e----------------------------- 365 (508)
T PRK12705 324 VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE----------------------------- 365 (508)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh-----------------------------
Confidence 5789999988754 33445676778999999999630 00
Q ss_pred CCccccccCcccCCCCcceeccccCchhhHHHHHhhCCCCCChhHHHHHHhcc
Q 026080 188 NPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 188 ~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
+.-.|.+.=+.+++.. .+|++...+|++|.
T Consensus 366 ---------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HH 395 (508)
T PRK12705 366 ---------------------SDGNHVEIGAELARKF--NEPDEVINAIASHH 395 (508)
T ss_pred ---------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhC
Confidence 0126888888888864 68999999999986
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=84.16 E-value=0.83 Score=41.03 Aligned_cols=55 Identities=31% Similarity=0.438 Sum_probs=41.6
Q ss_pred ccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh---hC-CCCCcceeccccccccccc
Q 026080 86 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DY-PDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 86 ~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~---d~-p~pDW~qLtGliHDLGKvl 146 (244)
+.||-+||+++|.+.|.+ .+.+.|++.++..+|. .. -+..=--++||+||+.--+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 468889999999998864 5889999999998873 22 2222225899999987555
No 15
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=82.55 E-value=0.34 Score=35.26 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhh---C----CCCCcceeccccccccccc
Q 026080 112 QIEHLLQTAEAIRKD---Y----PDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 112 ~i~H~lQTAEaiR~d---~----p~pDW~qLtGliHDLGKvl 146 (244)
...|.++++..+..- . .+++.+-+.||+||+||..
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 3 RFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 456776665554322 1 2346678999999999976
No 16
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=81.14 E-value=1.7 Score=36.05 Aligned_cols=126 Identities=24% Similarity=0.254 Sum_probs=71.1
Q ss_pred hcCCCCccccHHHHHHHhhh--------------hcCCCC-CCCC-chHHHHHHHHHHHHHh----hCC-CCCcceeccc
Q 026080 80 YGKLNRVEMSIWECCELLND--------------VVDESD-PDLD-EPQIEHLLQTAEAIRK----DYP-DEDWLHLTGL 138 (244)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln~--------------lVDeSD-PD~d-~~~i~H~lQTAEaiR~----d~p-~pDW~qLtGl 138 (244)
+.++.+.--||.+|+-.|=. ....+. .... ..-..|.+.+|..+++ ... ++|-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455666799999876641 222222 1222 3344899999888652 222 3478889999
Q ss_pred ccccccccccCCCCCCCCe-eEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhH
Q 026080 139 IHDLGKVLNLPSFGGLPQW-AVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYM 217 (244)
Q Consensus 139 iHDLGKvl~l~~~~~~~QW-avVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYl 217 (244)
+||+|+++++..+ |++ .-+..... .+ ++ +-=-.++-.+.+.|.|==
T Consensus 127 L~~iG~l~l~~~~---~~~~~~~~~~~~----------------~~------------~~--~~~~~e~~~~g~~h~~lg 173 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEYYEEILQEVK----------------QE------------PE--SREEAERELFGVTHAELG 173 (196)
T ss_dssp HTTHHHHHHHHHC---HHHHHHHHHHHH----------------HH------------CT--HHHHHHHHHHSSHHHHHH
T ss_pred HHHHhHHHHHHHh---HHHHHHHHHHHH----------------cC------------CC--CHHHHHHHHHcCCHHHHH
Confidence 9999999965222 111 11100000 00 00 001123445556788888
Q ss_pred HHHHhhCCCCCChhHHHHHHhcc
Q 026080 218 YLVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 218 Y~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
..++++- .||++-...||+|-
T Consensus 174 ~~l~~~W--~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 174 AALLRKW--GLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHHHT--T--HHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHHHHh
Confidence 8888875 89999999999984
No 17
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=72.38 E-value=3.4 Score=39.60 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=39.7
Q ss_pred cCCCCccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHH---hh-CCCCCcceeccccccccccc
Q 026080 81 GKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR---KD-YPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 81 ~~~~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR---~d-~p~pDW~qLtGliHDLGKvl 146 (244)
+|.-...++.-||+++|...--+ -..+.|.++.+...+ +. ..+.+=..+.||+||+||..
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~------e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k 226 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGAS------DLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTK 226 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 33445568999999999987221 136889887665532 22 22444556789999999964
No 18
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=72.23 E-value=11 Score=30.60 Aligned_cols=55 Identities=31% Similarity=0.476 Sum_probs=44.8
Q ss_pred hhhhhhHHHHHHHHHHhcC--CCCccccHHHHHHHhhh------hcCCCCCCCCchHHHHHHHHHHH
Q 026080 64 NHINQTYDFVKKMREEYGK--LNRVEMSIWECCELLND------VVDESDPDLDEPQIEHLLQTAEA 122 (244)
Q Consensus 64 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln~------lVDeSDPD~d~~~i~H~lQTAEa 122 (244)
..+.|+.++|.+..++|+- .|+.+-+|=||-..|.. ||++. + -|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~--~--~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP--D--DPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC--C--CccHHHHHHHHHH
Confidence 4467899999999999974 66889999999999986 55532 2 2778999999986
No 19
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=68.04 E-value=2.1 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.030 Sum_probs=23.5
Q ss_pred cCchhhHHHHHhhCCCCCC-hhHHHHHHhccc
Q 026080 211 WGHDDYMYLVAKENKTTLP-SAALFIIRYHSF 241 (244)
Q Consensus 211 WgHDEYlY~Vlk~n~~tLP-~eaL~mIRyHSF 241 (244)
..|.+.=+.++++. ..+| ++.+..||||--
T Consensus 258 ~~H~~~Ga~ll~~~-~~~p~~~i~~aI~~Hh~ 288 (342)
T PRK07152 258 VLHQYVGALWLKHV-YGIDDEEILNAIRNHTS 288 (342)
T ss_pred HHhHHHHHHHHHHH-cCCCcHHHHHHHHhccC
Confidence 35999999999762 3677 789999999863
No 20
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=66.70 E-value=2.9 Score=44.54 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHH---hhCCCCCc---ceeccccccccccc
Q 026080 110 EPQIEHLLQTAEAIR---KDYPDEDW---LHLTGLIHDLGKVL 146 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR---~d~p~pDW---~qLtGliHDLGKvl 146 (244)
-+.-+|+..+|+..+ +..+-++| ..+.|+.|||||.-
T Consensus 674 q~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 674 VALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EEHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 345599999988866 33446777 47999999999976
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=63.39 E-value=14 Score=39.13 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCcceeccccccccc
Q 026080 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~------------------d~p~pDW~qLtGliHDLGK 144 (244)
.+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 3455788888777652 1136788999999999999
No 22
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=55.12 E-value=4.4 Score=39.17 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCcceeccccccccccc
Q 026080 111 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 111 ~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl 146 (244)
+..+|.+.+-+.+.+-- ....+-++.|+||+||-.
T Consensus 227 dv~~Htl~~l~~~~~l~-~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLS-PSLDVRFAALCHDLGKGL 261 (409)
T ss_pred cHHHHHHHHHHHHHhcC-CCHHHHHHHHhccccCCC
Confidence 55689888887776542 334578899999999976
No 23
>PRK12704 phosphodiesterase; Provisional
Probab=53.16 E-value=11 Score=37.86 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHH----hhCCCCCcceeccccccccccc
Q 026080 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 92 EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (244)
+++.+|..+ .-.|+.+. ....|.+-+|-..+ .-+.+++-.-+.||+||+||+.
T Consensus 318 ~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 318 ELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 456666665 33344432 24578887766533 3334566677999999999974
No 24
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=51.38 E-value=9 Score=35.84 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=28.5
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHhh---CCCCC----cceecccccccccccc
Q 026080 101 VDESDPDLDEPQIEHLLQTAEAIRKD---YPDED----WLHLTGLIHDLGKVLN 147 (244)
Q Consensus 101 VDeSDPD~d~~~i~H~lQTAEaiR~d---~p~pD----W~qLtGliHDLGKvl~ 147 (244)
++..|+.| -.|-..+|+-.+.- -+-++ ++-+.|++||.||+-.
T Consensus 142 ~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 142 IKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred ccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 55555544 67888887764432 22333 5578999999999874
No 25
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=16 Score=32.92 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.0
Q ss_pred CCccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhC
Q 026080 84 NRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (244)
Q Consensus 84 ~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~ 127 (244)
.+++.||.||+++||. -.-+|.+ ||||.|-..|
T Consensus 113 pkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 113 PKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 3678999999999998 4455666 7899998887
No 26
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=49.40 E-value=14 Score=32.33 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=28.1
Q ss_pred CCCccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhC
Q 026080 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (244)
Q Consensus 83 ~~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~ 127 (244)
..++++|+.||+++|+..- .||.+ .|||.|-++|
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY 146 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEY 146 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHh
Confidence 4578999999999999864 45665 5799999998
No 27
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=49.08 E-value=17 Score=34.46 Aligned_cols=129 Identities=23% Similarity=0.289 Sum_probs=72.4
Q ss_pred HHHhcCCCCccccHHHHHHHhh-----hhc-----CC--CCCCCCchH----HHHHHHHHHHHH----hhC-CCCCccee
Q 026080 77 REEYGKLNRVEMSIWECCELLN-----DVV-----DE--SDPDLDEPQ----IEHLLQTAEAIR----KDY-PDEDWLHL 135 (244)
Q Consensus 77 ~~~~~~~~~~~MsI~EA~e~Ln-----~lV-----De--SDPD~d~~~----i~H~lQTAEaiR----~d~-p~pDW~qL 135 (244)
-.-|.++++.--||-||+..|= +|| .. +.++..--+ -++++-||-.++ .-+ ++++=.-+
T Consensus 66 NS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~ 145 (289)
T COG1639 66 NSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAYT 145 (289)
T ss_pred cchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3457778888888888877542 121 11 122222222 255666665543 333 56677789
Q ss_pred cccccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchh
Q 026080 136 TGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDD 215 (244)
Q Consensus 136 tGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDE 215 (244)
+||+|.+|+|+++..| |+|.-+.+-. . ..|+|-.+ .+-+..|+ .+|-+
T Consensus 146 ~gLLh~lG~l~ll~~~---~~~~~~~~~~------~---------~~~~~~~~-~~~e~~~i-------------~~h~~ 193 (289)
T COG1639 146 AGLLHNLGILVLLTDF---PDHCELLDYL------L---------ALNNDELL-ALDEELGI-------------FGHAS 193 (289)
T ss_pred HHHHHHccHHHHHHHh---HHHHHHHHHH------H---------HhccCccc-chHHHhcc-------------ccchH
Confidence 9999999999987333 4564332211 1 22322211 11222232 24667
Q ss_pred hHHHHHhhCCCCCChhHHHHHHhc
Q 026080 216 YMYLVAKENKTTLPSAALFIIRYH 239 (244)
Q Consensus 216 YlY~Vlk~n~~tLP~eaL~mIRyH 239 (244)
--+.+++.. .+|++-...||+|
T Consensus 194 Iga~llr~W--~fp~~l~e~i~~~ 215 (289)
T COG1639 194 IGAYLLRRW--NFPDDLIEAIRFH 215 (289)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHh
Confidence 777777764 6777777777776
No 28
>PRK03381 PII uridylyl-transferase; Provisional
Probab=48.95 E-value=9.6 Score=39.78 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHH---HhhCCCCCcceecccccccccc
Q 026080 111 PQIEHLLQTAEAI---RKDYPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 111 ~~i~H~lQTAEai---R~d~p~pDW~qLtGliHDLGKv 145 (244)
+.-+|.+.+-+.+ ...-..|+.+-|++|+||+||-
T Consensus 420 tVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg 457 (774)
T PRK03381 420 TVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKG 457 (774)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Confidence 4456888875554 3333457889999999999993
No 29
>PRK05092 PII uridylyl-transferase; Provisional
Probab=48.51 E-value=6.4 Score=41.67 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=35.1
Q ss_pred cHHHHHHHhhhhcCCCCCCCCc---------hHHHHHHHHHHHHHhh------------------CCCCCcceecccccc
Q 026080 89 SIWECCELLNDVVDESDPDLDE---------PQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHD 141 (244)
Q Consensus 89 sI~EA~e~Ln~lVDeSDPD~d~---------~~i~H~lQTAEaiR~d------------------~p~pDW~qLtGliHD 141 (244)
.+|..+.+|..++.|=..=..+ +.-+|.++|-+.+++- -++++.+-|++|+||
T Consensus 462 ~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHD 541 (931)
T PRK05092 462 RRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHD 541 (931)
T ss_pred HHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344444555556654332222 3336888887776531 235678899999999
Q ss_pred cccc
Q 026080 142 LGKV 145 (244)
Q Consensus 142 LGKv 145 (244)
+||-
T Consensus 542 IGKg 545 (931)
T PRK05092 542 IAKG 545 (931)
T ss_pred hhcC
Confidence 9993
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=47.49 E-value=21 Score=37.82 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCcceeccccccccc
Q 026080 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~------------------d~p~pDW~qLtGliHDLGK 144 (244)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4566798888776642 1245678899999999999
No 31
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=45.35 E-value=9.5 Score=34.19 Aligned_cols=36 Identities=33% Similarity=0.654 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH---HHhhCCCC-------------Cc---ceecccccccccccc
Q 026080 112 QIEHLLQTAEA---IRKDYPDE-------------DW---LHLTGLIHDLGKVLN 147 (244)
Q Consensus 112 ~i~H~lQTAEa---iR~d~p~p-------------DW---~qLtGliHDLGKvl~ 147 (244)
-++|-+.+|.. +++-|.-| .| .-..+|+||+||++.
T Consensus 68 Ll~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 68 LLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhhH
Confidence 45777777443 55555211 23 356789999999963
No 32
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=44.94 E-value=8.4 Score=36.37 Aligned_cols=33 Identities=42% Similarity=0.640 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCCC--Ccceeccccccccccccc
Q 026080 116 LLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNL 148 (244)
Q Consensus 116 ~lQTAEaiR~d~p~p--DW~qLtGliHDLGKvl~l 148 (244)
++++|.++-..||.- |-+-...|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 344455555557644 445566789999999965
No 33
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=42.80 E-value=12 Score=30.71 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCCCcceeccccccc
Q 026080 106 PDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (244)
Q Consensus 106 PD~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDL 142 (244)
.+...|-|.|++++|+.+.+-+-+ .=...+||+||.
T Consensus 14 ~~~g~py~~H~~~va~~l~~~~~d-~~~i~aalLHD~ 49 (153)
T PF13328_consen 14 RKSGEPYISHPLEVAEILAELGLD-EETIAAALLHDV 49 (153)
T ss_dssp -ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCC-HHHHhhheeecH
Confidence 345578999999999998655422 124688899984
No 34
>PRK08071 L-aspartate oxidase; Provisional
Probab=37.90 E-value=44 Score=32.81 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHhhhhc-CCC--CCC---CCchHHHHHHHHHHHH---------------HhhCCCCC
Q 026080 73 VKKMREEYGKLNRVEMSIWECCELLNDVV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPDED 131 (244)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lV-DeS--DPD---~d~~~i~H~lQTAEai---------------R~d~p~pD 131 (244)
+++...+|.+.-|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|+.| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45666778787888888999999999884 111 111 1223456888888874 66788778
Q ss_pred cceeccccccccccc
Q 026080 132 WLHLTGLIHDLGKVL 146 (244)
Q Consensus 132 W~qLtGliHDLGKvl 146 (244)
|...+ ++-.-||+.
T Consensus 495 ~~~~~-~~~~~~~~~ 508 (510)
T PRK08071 495 WRGKE-IVRTKRKLQ 508 (510)
T ss_pred cCceE-EEecCCcee
Confidence 87555 666666654
No 35
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=37.33 E-value=7.7 Score=33.38 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=30.4
Q ss_pred eeccccCchhhHHHHHhhCCCCCChhHHHHHHhccccC
Q 026080 206 NVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYG 243 (244)
Q Consensus 206 nv~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHSFYp 243 (244)
...|...-+|+|-+++.| +|+.++-||||+-||.
T Consensus 144 ~~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 144 TKTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 366777899999999997 9999999999999885
No 36
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=36.85 E-value=25 Score=33.34 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCC--CcceecccccccccccccCCCCCCCCeeEecccee
Q 026080 115 HLLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFP 165 (244)
Q Consensus 115 H~lQTAEaiR~d~p~p--DW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfP 165 (244)
-+++.|.++-+-||-- |=++..+.+||+||++-+-... ...|.+=|+-.+
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~~-~~~yt~~g~lig 199 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGPE-ATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCcc-cccceeccceeE
Confidence 3566677776666533 5678899999999999662222 457888777665
No 37
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=36.78 E-value=14 Score=39.38 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCcceecccccccccc
Q 026080 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d------------------~p~pDW~qLtGliHDLGKv 145 (244)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 45557999998777541 1245788999999999994
No 38
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=35.52 E-value=29 Score=31.02 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=26.4
Q ss_pred hHHHHHHHHHH---HHHhh-CCCCCcceeccccccccccccc
Q 026080 111 PQIEHLLQTAE---AIRKD-YPDEDWLHLTGLIHDLGKVLNL 148 (244)
Q Consensus 111 ~~i~H~lQTAE---aiR~d-~p~pDW~qLtGliHDLGKvl~l 148 (244)
..+.|.+.+|. .|-+. +-|++=....||+||+||....
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 45667666554 45544 4456666899999999999844
No 39
>PRK04374 PII uridylyl-transferase; Provisional
Probab=35.12 E-value=20 Score=38.23 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCcceecccccccccc
Q 026080 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d------------------~p~pDW~qLtGliHDLGKv 145 (244)
.+.-+|.+.+-+.+++- -.+|+.+-|++|+||+||-
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGKg 501 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAKG 501 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccCC
Confidence 45567888877666521 1347889999999999993
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=34.89 E-value=65 Score=33.80 Aligned_cols=37 Identities=32% Similarity=0.332 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHh---hCCCCCcceeccccccccccc
Q 026080 110 EPQIEHLLQTAEAIRK---DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~---d~p~pDW~qLtGliHDLGKvl 146 (244)
.+.-+|.+.|.+.+.+ ...+|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 3555799999886543 234567778999999999954
No 41
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=32.45 E-value=2.8e+02 Score=25.86 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCccccHHHHHHHhhhhcCCCCCCCCchH-HHHHHHHHHHHHhhCCCCCcceecccccccccccccCCCCC--------C
Q 026080 84 NRVEMSIWECCELLNDVVDESDPDLDEPQ-IEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG--------L 154 (244)
Q Consensus 84 ~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~-i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~l~~~~~--------~ 154 (244)
|....|-.+..+.|..+... |+...+ +.=..-||+.|++.+|. +|++.+ |+ .
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~---~~~~~~i~TS~~at~~~l~~~~~~-------------~kv~vi---G~~~l~~~l~~ 108 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGV---DVTPDDIVTSGDATADYLAKQKPG-------------KKVYVI---GEEGLKEELEG 108 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCC---CCCHHHeecHHHHHHHHHHhhCCC-------------CEEEEE---CCcchHHHHHh
Confidence 45667777677777773222 222222 24456678888887652 455443 21 2
Q ss_pred CCeeEecccee-----cccccCCCccc-------------ccccccCCCCCCCccccccCcccCCCC
Q 026080 155 PQWAVVGDTFP-----VGCAFDESIVH-------------HKYFKENPDYSNPAFNTEYGVYSEGCG 203 (244)
Q Consensus 155 ~QWavVGDTfP-----vGC~f~~~iv~-------------~~~F~~NPD~~~p~Ynt~~GiY~~~CG 203 (244)
-.|.++++.=| |.+.+++...| ..|+..|||..=| |+.| +-|+||
T Consensus 109 ~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p---~~~g-~~pgaG 171 (269)
T COG0647 109 AGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVP---TERG-LRPGAG 171 (269)
T ss_pred CCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcccc---CCCC-CccCcH
Confidence 24555554444 66667777776 4678899997655 6778 778887
No 42
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=32.10 E-value=2.1e+02 Score=28.27 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCCCCCCcccccCCCCcc-chhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCC-----------CccccHHHHHHHhhh
Q 026080 32 FLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLN-----------RVEMSIWECCELLND 99 (244)
Q Consensus 32 f~~P~~~~~~~~FR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~-----------~~~MsI~EA~e~Ln~ 99 (244)
|..|.-|.-.-+|--|+. ....-..|+++|..--.. -.|++++..++|+..- -..-+..||++.|.+
T Consensus 115 FeePqPnppvVtfDVFD~p~pglpkpire~~~dVmed-P~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEd 193 (403)
T COG2069 115 FEEPQPNPPVVTFDVFDIPRPGLPKPIREHYDDVMED-PGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLED 193 (403)
T ss_pred cCCCCCCCCeeEEEeccCCCCCCchhHHHHHHHHhhC-HHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHH
Confidence 888888877667888875 333336799999986555 7899999999998521 124688999999998
Q ss_pred hcCC---------C-CCCCCchHHHHHHHHHHH
Q 026080 100 VVDE---------S-DPDLDEPQIEHLLQTAEA 122 (244)
Q Consensus 100 lVDe---------S-DPD~d~~~i~H~lQTAEa 122 (244)
+++. | ||..|--.++.+-..||+
T Consensus 194 vLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEG 226 (403)
T COG2069 194 VLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEG 226 (403)
T ss_pred HHHhcCcCEEecCCCCCccCHHHHHHHHHhhcC
Confidence 7543 4 688887788887777665
No 43
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=31.58 E-value=27 Score=31.25 Aligned_cols=48 Identities=31% Similarity=0.498 Sum_probs=32.4
Q ss_pred HHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhh---C-CCCCcceeccccccccccc
Q 026080 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD---Y-PDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 92 EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d---~-p~pDW~qLtGliHDLGKvl 146 (244)
+....+..+++ .+.++|.+-.||+.++- | -++.=--++|+.||+.|-+
T Consensus 5 ~l~~~~~~~l~-------~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 5 ELLAIVKELLS-------EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 44444555444 37999999888776542 2 1333467999999999987
No 44
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=31.12 E-value=12 Score=39.22 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhhC------------------CCCCcceecccccccccc
Q 026080 111 PQIEHLLQTAEAIRKDY------------------PDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 111 ~~i~H~lQTAEaiR~d~------------------p~pDW~qLtGliHDLGKv 145 (244)
+.-+|.+.+.+.+.+-. ++++.+-|++|+||+||-
T Consensus 428 tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg 480 (850)
T TIGR01693 428 TVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKG 480 (850)
T ss_pred chhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcC
Confidence 33468888877765421 135578999999999993
No 45
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=30.60 E-value=73 Score=26.27 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCCCcccccCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCC-----CccccHHHHHHHhhhhcCCC
Q 026080 35 PQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLN-----RVEMSIWECCELLNDVVDES 104 (244)
Q Consensus 35 P~~~~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~-----~~~MsI~EA~e~Ln~lVDeS 104 (244)
|.-+.++.+|-+|++ .+|.+|=+-++-++++|.. ...-.|.+-.|++++|.|-|
T Consensus 10 ~s~r~esRT~~DYes----------------v~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~DlS 68 (104)
T KOG1766|consen 10 PSPRPESRTWGDYES----------------VTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLADLS 68 (104)
T ss_pred CCCCcccccccchHh----------------HHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhhhh
Confidence 333455668889987 3445555666666665532 34567999999999999877
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=30.45 E-value=24 Score=37.42 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHh----h--------------CCCCCcceeccccccccc
Q 026080 110 EPQIEHLLQTAEAIRK----D--------------YPDEDWLHLTGLIHDLGK 144 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~----d--------------~p~pDW~qLtGliHDLGK 144 (244)
.+.-+|.+.|-+.+++ + -.+++.+.|++|+||+||
T Consensus 439 ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 439 YTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred CcHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 3555799998877653 1 123578899999999999
No 47
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=29.89 E-value=19 Score=23.55 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.4
Q ss_pred eeEeccceecc
Q 026080 157 WAVVGDTFPVG 167 (244)
Q Consensus 157 WavVGDTfPvG 167 (244)
=-++|+|||+|
T Consensus 21 LG~~G~~fpIa 31 (31)
T PF12477_consen 21 LGVIGPTFPIA 31 (31)
T ss_pred ccccccccccC
Confidence 34779999975
No 48
>COG4198 Uncharacterized conserved protein [Function unknown]
Probab=29.76 E-value=35 Score=33.69 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=30.2
Q ss_pred HHhhhhcCCCCCCCC----chHHHHHHHHHHHHHhhCCCCCcc---eeccc-ccccc
Q 026080 95 ELLNDVVDESDPDLD----EPQIEHLLQTAEAIRKDYPDEDWL---HLTGL-IHDLG 143 (244)
Q Consensus 95 e~Ln~lVDeSDPD~d----~~~i~H~lQTAEaiR~d~p~pDW~---qLtGl-iHDLG 143 (244)
+-|..|||.-+=++- -|.|+||+-+|.+-+.-=|+--|| -|.|| ||+||
T Consensus 349 ~EL~rlVn~gs~svaf~Myp~~~~~Lm~v~ds~kimPpKSTwFePKl~SGL~Ih~~~ 405 (405)
T COG4198 349 EELERLVNSGSFSVAFAMYPWDIEDLMEVLDSGKIMPPKSTWFEPKLLSGLFIHVLG 405 (405)
T ss_pred HHHHHHhcCCceeEEEEeCCCCHHHHHhhhhhCCcCCCcccccccccccceeeeecC
Confidence 334555554332222 256788888887766665566788 57777 77765
No 49
>PLN02892 isocitrate lyase
Probab=29.00 E-value=71 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHhcCCCCccccHHHHHHHhhhhcC-----CCC--------------------------C-------CCCchHHHHHH
Q 026080 76 MREEYGKLNRVEMSIWECCELLNDVVD-----ESD--------------------------P-------DLDEPQIEHLL 117 (244)
Q Consensus 76 ~~~~~~~~~~~~MsI~EA~e~Ln~lVD-----eSD--------------------------P-------D~d~~~i~H~l 117 (244)
+.++|.+....-+|+.||-++-.+|.- +-| | .++.|.+.-+-
T Consensus 338 ~~~~~~~~~~~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~APyaDliW~ET~~Pdl~~A~ 417 (570)
T PLN02892 338 RLNEWMASVPKCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAPYADLIWMETASPDLAEAT 417 (570)
T ss_pred HHHHHHhhccccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhcccccCEEEecCCCCCHHHHH
Confidence 445666666677888888877777631 111 3 45579999999
Q ss_pred HHHHHHHhhCCCC----------Ccc-------eecccccccccc
Q 026080 118 QTAEAIRKDYPDE----------DWL-------HLTGLIHDLGKV 145 (244)
Q Consensus 118 QTAEaiR~d~p~p----------DW~-------qLtGliHDLGKv 145 (244)
+.||+||+.+|+. .|- ++--|+-||||+
T Consensus 418 ~Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLakl 462 (570)
T PLN02892 418 KFAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARL 462 (570)
T ss_pred HHHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999854 254 356688888883
No 50
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.15 E-value=80 Score=30.24 Aligned_cols=61 Identities=30% Similarity=0.437 Sum_probs=46.3
Q ss_pred ccccHHHHHHHhhhhcCCCCCCCCchHHHH------------HHHHHHHHHhhCCCCCcceecccccccccccccCCCCC
Q 026080 86 VEMSIWECCELLNDVVDESDPDLDEPQIEH------------LLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG 153 (244)
Q Consensus 86 ~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H------------~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~l~~~~~ 153 (244)
.|-.+|+|+-.=-+|+-+|.=|.|++++-- |=-||||.|++ | |--|+.|-+||.|
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~dSG---------- 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSDSG---------- 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeeccCC----------
Confidence 466788887666677778999999988732 33589999997 3 7778888888865
Q ss_pred CCCeeE
Q 026080 154 LPQWAV 159 (244)
Q Consensus 154 ~~QWav 159 (244)
|+.|+|
T Consensus 245 EGrWTv 250 (300)
T COG1023 245 EGRWTV 250 (300)
T ss_pred Cceeeh
Confidence 567875
No 51
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=27.92 E-value=27 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.8
Q ss_pred ccCcccCCCCcceeccccCchhhHHHHHhhCCCCCChh
Q 026080 194 EYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSA 231 (244)
Q Consensus 194 ~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk~n~~tLP~e 231 (244)
..-|.+|.|+||++ ++|||.|-|. +|..
T Consensus 70 ~l~i~kPsFpl~~~------pdFLh~~GkG----~PkD 97 (103)
T PF10305_consen 70 DLTIDKPSFPLDDL------PDFLHDVGKG----VPKD 97 (103)
T ss_pred cEEEeCCCCCchhh------HHHHHHhCCC----CCCC
Confidence 34578999999997 8999999986 5654
No 52
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=27.20 E-value=36 Score=33.22 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHhhC-CCCC-cceecccccccccccc
Q 026080 110 EPQIEHLLQTAEAIRKDY-PDED-WLHLTGLIHDLGKVLN 147 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d~-p~pD-W~qLtGliHDLGKvl~ 147 (244)
.+...|.+++-+.+.+-- ..++ .+.|+.|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 466789998877765321 1234 6899999999999653
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=26.95 E-value=1.9e+02 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcC--CC--CccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhCCC
Q 026080 71 DFVKKMREEYGK--LN--RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPD 129 (244)
Q Consensus 71 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~p~ 129 (244)
.|...+++-|.+ ++ ...||..||++.|.- +|+.+...|.-++. +.+++-|||
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPD 96 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPD 96 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCC
Confidence 355667776644 33 458999999999983 34555556654443 334455553
No 54
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.43 E-value=1e+02 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=33.4
Q ss_pred CccccHHHHHHHhhhhcCCC-CCCCCchHHHHHHHHHHHHH
Q 026080 85 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIR 124 (244)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDeS-DPD~d~~~i~H~lQTAEaiR 124 (244)
+.++|.-+|++.|.++|..- ++|++|.+..-+++.+-.+-
T Consensus 3 ~~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~ 43 (76)
T PRK14068 3 KETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLS 43 (76)
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 35789999999999999876 78999999988888776643
No 55
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=26.23 E-value=22 Score=36.69 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.1
Q ss_pred eecccccccccccc
Q 026080 134 HLTGLIHDLGKVLN 147 (244)
Q Consensus 134 qLtGliHDLGKvl~ 147 (244)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46799999999994
No 56
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=25.67 E-value=47 Score=34.47 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCc-ceeccccccccc
Q 026080 108 LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLGK 144 (244)
Q Consensus 108 ~d~~~i~H~lQTAEaiR~d~p~pDW-~qLtGliHDLGK 144 (244)
...|-|.|.+++|+.+.+-+. |. ...+||+||.=.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~--D~~~i~AaLLHDvvE 51 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGM--DEETVCAALLHDVIE 51 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCC--CHHHHHHHhccchHh
Confidence 446889999999999987643 44 366899999743
No 57
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=25.66 E-value=34 Score=35.05 Aligned_cols=40 Identities=25% Similarity=0.652 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCC----------Ccc------eeccccccccccc
Q 026080 107 DLDEPQIEHLLQTAEAIRKDYPDE----------DWL------HLTGLIHDLGKVL 146 (244)
Q Consensus 107 D~d~~~i~H~lQTAEaiR~d~p~p----------DW~------qLtGliHDLGKvl 146 (244)
.++.|.+..+-+.||+||+.+|+. .|. ++-.|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 456799999999999999999854 253 6778899999943
No 58
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=25.41 E-value=1.8e+02 Score=22.70 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred CcccccCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhh
Q 026080 38 NSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLND 99 (244)
Q Consensus 38 ~~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~ 99 (244)
|.+...+....++.....-+.+.=.+-++.|+..|..+..+==..-...+||.-||+|+|..
T Consensus 3 n~e~~~~~~~~d~~~l~~lL~~AR~eeRk~~A~~~S~RL~~LA~hi~~~~ls~~E~~ELLrq 64 (77)
T PF10809_consen 3 NTETRSMKTGADAASLNELLNKARMEERKDRADAFSSRLDALAAHIANEELSAVEAAELLRQ 64 (77)
T ss_pred cchhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 44444555555432244556666677888888888776655444455779999999999975
No 59
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.32 E-value=2.8e+02 Score=23.90 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH-HhcCCC-----CccccHHHHHHHhhhhcCC-CCCCCCchHHHHHHHHHH
Q 026080 56 GVENFYRINHINQTYDFVKKMRE-EYGKLN-----RVEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTAE 121 (244)
Q Consensus 56 ~V~~fYr~~H~~QTvdfv~~~~~-~~~~~~-----~~~MsI~EA~e~Ln~lVDe-SDPD~d~~~i~H~lQTAE 121 (244)
++.+.||++= .|+.+-...... +=+..+ .++||+-||+..||- ++ -.++.=.-+.+|||+.-+
T Consensus 19 Af~~A~RQei-a~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNd 88 (132)
T KOG3442|consen 19 AFVQAYRQEI-AASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVND 88 (132)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccC
Confidence 5667788653 445555443332 222222 367999999999984 22 122222345588887643
No 60
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.24 E-value=1.1e+02 Score=23.40 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=33.7
Q ss_pred CccccHHHHHHHhhhhcCCC-CCCCCchHHHHHHHHHHHHHh
Q 026080 85 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIRK 125 (244)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDeS-DPD~d~~~i~H~lQTAEaiR~ 125 (244)
+.++|.-+|+..|.++|..- +++++|....-+++.+-.+-+
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k 44 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK 44 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 35689999999999999887 689999998888887766443
No 61
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=41 Score=34.53 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=15.7
Q ss_pred HHHHHhhCCCCCcceecc
Q 026080 120 AEAIRKDYPDEDWLHLTG 137 (244)
Q Consensus 120 AEaiR~d~p~pDW~qLtG 137 (244)
|+-+|++++.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 788899999999999873
No 62
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=24.01 E-value=37 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHh-h----CCCCCcceeccccccccccc
Q 026080 108 LDEPQIEHLLQTAEAIRK-D----YPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 108 ~d~~~i~H~lQTAEaiR~-d----~p~pDW~qLtGliHDLGKvl 146 (244)
-++.-+...+.+|.+|-+ + ..++.=+-+++|+||+|+.-
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~ 98 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTD 98 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcccc
Confidence 334444555556666633 2 22445567899999999854
No 63
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=23.98 E-value=28 Score=29.15 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=16.2
Q ss_pred CccccHHHHHHHhhhhcCC-CCCCCCchHHHHHHHHH
Q 026080 85 RVEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTA 120 (244)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDe-SDPD~d~~~i~H~lQTA 120 (244)
...||+.||+..|| |++ .+++.=.-+..|||..-
T Consensus 52 ~~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~N 86 (127)
T PF03656_consen 52 SKGMTLDEARQILN--VKEELSREEIQKRYKHLFKAN 86 (127)
T ss_dssp -----HHHHHHHHT----G--SHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhcc
Confidence 34799999999999 555 22222233446666543
No 64
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=23.19 E-value=22 Score=35.12 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCcceecccccccccccc
Q 026080 111 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (244)
Q Consensus 111 ~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~ 147 (244)
....|.+.+-+.+.+.- ..-++-+++|+||+||-..
T Consensus 228 d~~~htl~~l~~~~~~~-~~l~lR~AaLlHDiGK~~t 263 (417)
T PRK13298 228 NLGNYILMGLSKISKLT-KDIDIRFSYLCQFLGSMIP 263 (417)
T ss_pred hHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhhcCCCC
Confidence 44567776666655432 2346778999999999753
No 65
>PHA00687 hypothetical protein
Probab=23.02 E-value=51 Score=24.06 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.7
Q ss_pred CCCCChhHHHHHH
Q 026080 225 KTTLPSAALFIIR 237 (244)
Q Consensus 225 ~~tLP~eaL~mIR 237 (244)
++|||+||+.++.
T Consensus 8 qttlppeamrllq 20 (56)
T PHA00687 8 QTTLPPEAMRLLQ 20 (56)
T ss_pred cccCCHHHHHHHH
Confidence 5899999987764
No 66
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=21.84 E-value=1.8e+02 Score=28.60 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHHHHHhhhhcCCCCCCCCchHHHHHHHH---HHHHHhhCC----CCCcceeccccccccccc
Q 026080 91 WECCELLNDVVDESDPDLDEPQIEHLLQT---AEAIRKDYP----DEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~d~~~i~H~lQT---AEaiR~d~p----~pDW~qLtGliHDLGKvl 146 (244)
.+.++-|..++..-|+.|. .|+..+ ++.+-+..+ .-|=+.+.+.+||.|||-
T Consensus 169 ~~t~~~L~~~~E~R~~etg----~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 169 DETLEELAALLEVRDYETG----DHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 3778888888855566663 333332 222222221 125668899999999986
No 67
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=21.67 E-value=98 Score=32.51 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhCCCCCcc-eeccccccccc
Q 026080 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWL-HLTGLIHDLGK 144 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~p~pDW~-qLtGliHDLGK 144 (244)
+..|+++........-.....|-|.|.+++|+.+..-+ -|+- ..+||+||.-.
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~--~D~~ti~AaLLHDvvE 76 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMR--LDYETLMAALLHDVIE 76 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcC--CCHHHHHHhcccchhh
Confidence 34455555433332222334577899999999988643 3544 67899999743
No 68
>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3.1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].
Probab=21.16 E-value=41 Score=25.09 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=23.7
Q ss_pred ccccCcccCCCCcceeccccCc-hhhHHHHHhhCC-CCCChhHHHHHH
Q 026080 192 NTEYGVYSEGCGLDNVMMSWGH-DDYMYLVAKENK-TTLPSAALFIIR 237 (244)
Q Consensus 192 nt~~GiY~~~CGLdnv~mSWgH-DEYlY~Vlk~n~-~tLP~eaL~mIR 237 (244)
+.--|+|.|..+.-.|.-.-|. =.-|=+.....+ --+|+||||++-
T Consensus 15 ~~~~a~w~p~~~~a~v~~~rG~~~~~mG~~~~~~~~~L~pEEalyLvE 62 (72)
T PF12928_consen 15 NLSRAIWDPELRMAEVTHPRGKFFQTMGRADRGGKLWLLPEEALYLVE 62 (72)
T ss_pred CEEEEEEECCCCEEEEECCcCCcHHhcCCccCCCeEEEeHHHHHHHHh
Confidence 3445666666666666554443 111111111112 257999999873
No 69
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=21.10 E-value=75 Score=28.84 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHHHHhhC
Q 026080 108 LDEPQIEHLLQTAEAIRKDY 127 (244)
Q Consensus 108 ~d~~~i~H~lQTAEaiR~d~ 127 (244)
+.|.-|+|++=|+|+||.++
T Consensus 145 ~~LGtINHtlLt~eal~~~g 164 (223)
T COG0132 145 IKLGTINHTLLTVEALRARG 164 (223)
T ss_pred CCccHHHHHHHHHHHHHHCC
Confidence 44788999999999999986
No 70
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.77 E-value=4.2e+02 Score=20.83 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCCCCCCcccccCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCCc
Q 026080 31 GFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDE 110 (244)
Q Consensus 31 ~f~~P~~~~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~d~ 110 (244)
|+.+|.- ..+.+|.|+. .+ |. ++.+++..+ ..-||+-|.-++|+......++..+.
T Consensus 24 GLl~p~r--~~~g~R~Y~~-~~----~~----------~l~~I~~lr-------~~G~sl~eI~~~l~~~~~~~~~~~~~ 79 (112)
T cd01282 24 GLLVPER--SANGYRDYDE-AA----VD----------RVRQIRRLL-------AAGLTLEEIREFLPCLRGGEPTFRPC 79 (112)
T ss_pred CCCCCCc--CCCCCeecCH-HH----HH----------HHHHHHHHH-------HcCCCHHHHHHHHHHhhCCCccCCcc
Confidence 6777853 3457999985 21 22 223333333 22377777777766543332233334
Q ss_pred hHHHHHH
Q 026080 111 PQIEHLL 117 (244)
Q Consensus 111 ~~i~H~l 117 (244)
+.+..++
T Consensus 80 ~~~~~~l 86 (112)
T cd01282 80 PDLLAVL 86 (112)
T ss_pred HHHHHHH
Confidence 4444433
No 71
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=20.73 E-value=29 Score=32.82 Aligned_cols=51 Identities=27% Similarity=0.522 Sum_probs=29.7
Q ss_pred hhhhcCCCCCCCC---chHHHHHHHHHHH-HHhhC----C-----------CCCcc---eecccccccccccc
Q 026080 97 LNDVVDESDPDLD---EPQIEHLLQTAEA-IRKDY----P-----------DEDWL---HLTGLIHDLGKVLN 147 (244)
Q Consensus 97 Ln~lVDeSDPD~d---~~~i~H~lQTAEa-iR~d~----p-----------~pDW~---qLtGliHDLGKvl~ 147 (244)
+-.++..|...-- =--+.|.|++|.. +|-.. | .+.|- -++||.||+||++.
T Consensus 49 ~vQ~LPASe~hhha~~GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 49 FVQLLPASESHHHAGPGGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHhcCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3344555543221 2356888887754 44211 1 34576 57899999999774
No 72
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=20.61 E-value=77 Score=26.78 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.0
Q ss_pred HHHHHhhCCCCCChhHHHHH
Q 026080 217 MYLVAKENKTTLPSAALFII 236 (244)
Q Consensus 217 lY~Vlk~n~~tLP~eaL~mI 236 (244)
|||-+|.|+.+||+-.+|-+
T Consensus 47 lYqslkRN~i~lPsv~~Yn~ 66 (120)
T PF08579_consen 47 LYQSLKRNGITLPSVELYNK 66 (120)
T ss_pred HHHHHHhcCCCCCcHHHHHH
Confidence 89999999999998877643
Done!