Query 026080
Match_columns 244
No_of_seqs 127 out of 204
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 4E-116 1E-120 794.0 13.7 214 27-244 10-229 (289)
2 2ibn_A Inositol oxygenase; red 100.0 2E-104 6E-109 708.0 10.2 187 55-244 3-190 (250)
3 2o08_A BH1327 protein; putativ 94.1 0.022 7.6E-07 46.7 2.4 52 88-146 2-57 (188)
4 3ccg_A HD superfamily hydrolas 93.9 0.019 6.6E-07 47.1 1.5 52 88-146 3-58 (190)
5 2ogi_A Hypothetical protein SA 93.8 0.024 8.3E-07 46.9 2.2 52 88-146 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 86.6 0.38 1.3E-05 42.1 3.0 125 82-240 74-218 (305)
7 3i7a_A Putative metal-dependen 84.9 0.71 2.4E-05 39.8 3.8 118 80-240 69-214 (281)
8 3b57_A LIN1889 protein; Q92AN1 83.4 0.6 2E-05 38.9 2.6 55 92-146 9-64 (209)
9 2qgs_A Protein Se1688; alpha-h 82.1 0.74 2.5E-05 38.9 2.7 51 91-144 8-63 (225)
10 3dto_A BH2835 protein; all alp 81.8 0.83 2.8E-05 39.2 3.0 57 90-146 7-64 (223)
11 3ljx_A MMOQ response regulator 81.2 0.67 2.3E-05 40.3 2.2 125 80-240 61-206 (288)
12 3djb_A Hydrolase, HD family; a 80.9 0.71 2.4E-05 39.6 2.2 56 90-145 7-63 (223)
13 2pjq_A Uncharacterized protein 78.9 0.84 2.9E-05 38.8 2.0 58 88-145 10-68 (231)
14 3mem_A Putative signal transdu 75.9 0.23 7.7E-06 46.4 -2.6 128 80-240 230-382 (457)
15 3m1t_A Putative phosphohydrola 73.2 1.4 4.9E-05 37.9 1.9 123 82-240 62-203 (275)
16 2pq7_A Predicted HD superfamil 71.1 2.8 9.6E-05 34.7 3.2 53 90-145 15-71 (220)
17 3sk9_A Putative uncharacterize 68.1 1.5 5E-05 38.8 0.9 42 109-152 23-84 (265)
18 3tm8_A BD1817, uncharacterized 64.7 2.8 9.7E-05 37.2 2.1 27 212-239 231-257 (328)
19 3kq5_A Hypothetical cytosolic 63.8 1.6 5.3E-05 41.5 0.2 37 110-146 74-119 (393)
20 1vqr_A Hypothetical protein CJ 60.0 4.5 0.00015 34.9 2.4 78 69-146 65-164 (297)
21 2l3i_A Aoxki4A, antimicrobial 40.5 24 0.00083 22.0 2.8 26 208-241 5-30 (30)
22 2hek_A Hypothetical protein; p 38.0 14 0.00048 34.0 2.1 37 110-146 49-90 (371)
23 3nqw_A CG11900; stringent resp 37.6 32 0.0011 28.4 4.1 54 90-143 9-65 (179)
24 3m5f_A Metal dependent phospho 36.4 13 0.00045 33.1 1.6 16 131-146 57-72 (244)
25 3nr1_A HD domain-containing pr 35.5 33 0.0011 28.3 3.8 35 109-143 28-63 (178)
26 3gw7_A Uncharacterized protein 34.1 11 0.00037 32.6 0.7 41 105-145 22-63 (239)
27 4dmb_A HD domain-containing pr 30.9 11 0.00039 32.2 0.3 44 110-166 44-90 (204)
28 1ynb_A Hypothetical protein AF 30.1 15 0.00052 30.6 0.9 36 110-146 37-80 (173)
29 2paq_A 5'-deoxynucleotidase YF 28.6 18 0.0006 30.4 1.0 38 110-147 30-77 (201)
30 1ckk_B Camkk, protein (RAT Ca2 27.9 13 0.00046 22.8 0.1 9 234-242 15-23 (26)
31 1chu_A Protein (L-aspartate ox 27.5 51 0.0017 30.9 4.1 51 73-123 443-500 (540)
32 2dqb_A Deoxyguanosinetriphosph 25.2 19 0.00065 33.4 0.7 36 111-146 75-114 (376)
33 1vj7_A Bifunctional RELA/SPOT; 24.7 37 0.0013 31.7 2.5 53 90-143 28-80 (393)
34 3aql_A Poly(A) polymerase; tra 21.9 22 0.00075 33.1 0.4 36 111-146 266-303 (415)
35 2q14_A Phosphohydrolase; BT420 21.0 27 0.00093 32.7 0.8 14 133-146 89-102 (410)
36 2ksn_A Ubiquitin domain-contai 20.6 1.1E+02 0.0037 25.3 4.3 47 69-126 34-83 (137)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=4.4e-116 Score=794.03 Aligned_cols=214 Identities=49% Similarity=0.913 Sum_probs=192.4
Q ss_pred eecCC-CCCCCCC----cccccCCCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhhhc
Q 026080 27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV 101 (244)
Q Consensus 27 vldg~-f~~P~~~----~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lV 101 (244)
.||++ |.+|+.+ +++++||||++ +.++++|++|||+||++||||||++||++|++++|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 48888 6888877 67889999997 557899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceecccccccccccccCCCCCCCCeeEeccceecccccCCCccccc-cc
Q 026080 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YF 180 (244)
Q Consensus 102 DeSDPD~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~-~F 180 (244)
||||||+|+|||+||||||||||+|||..||||||||||||||||++ | ++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~--~-~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL--W-GEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG--G-TCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh--c-CCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999999877999999999999999987 4 69999999999999999999999999 99
Q ss_pred ccCCCCCCCccccccCcccCCCCcceeccccCchhhHHHHHhhCCCCCChhHHHHHHhccccCC
Q 026080 181 KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYGK 244 (244)
Q Consensus 181 ~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHSFYp~ 244 (244)
++|||.+||+|||+||||+||||||||+||||||||||+|||+|+||||+|||+||||||||||
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpw 229 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPW 229 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1.8e-104 Score=708.04 Aligned_cols=187 Identities=53% Similarity=0.983 Sum_probs=180.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhCCCCCcce
Q 026080 55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 134 (244)
Q Consensus 55 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~p~pDW~q 134 (244)
++|++|||+||++||||||++||++|++++|++|||||||++||+||||||||++++||+|+|||||+||+|||+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred ecccccccccccccCCCCCCCCeeEeccceecccccCCCccccc-ccccCCCCCCCccccccCcccCCCCcceeccccCc
Q 026080 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213 (244)
Q Consensus 135 LtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~-~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgH 213 (244)
|+||||||||+|++ + ++|||+||||||||||+|+++|||++ +|++|||.+||+|||+||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~--~-~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL--F-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH--T-TCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc--c-CCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 4 68999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhHHHHHhhCCCCCChhHHHHHHhccccCC
Q 026080 214 DDYMYLVAKENKTTLPSAALFIIRYHSFYGK 244 (244)
Q Consensus 214 DEYlY~Vlk~n~~tLP~eaL~mIRyHSFYp~ 244 (244)
|||||+|||+|+||||+|||+||||||||||
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypw 190 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPW 190 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCch
Confidence 9999999999999999999999999999997
No 3
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=94.09 E-value=0.022 Score=46.65 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred ccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh----hCCCCCcceeccccccccccc
Q 026080 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~----d~p~pDW~qLtGliHDLGKvl 146 (244)
|++.++.++|.+.+++ ....|.+.+|...+. -+-+++-.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999987653 578899998877543 233445567999999999985
No 4
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.85 E-value=0.019 Score=47.12 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHH----hhCCCCCcceeccccccccccc
Q 026080 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (244)
|++.++.+.|.+.+++ ....|.+.+|...+ +-+-+++-..+.||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888898999887653 57789999887744 2333456678999999999975
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.83 E-value=0.024 Score=46.92 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=40.3
Q ss_pred ccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh----hCCCCCcceeccccccccccc
Q 026080 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~----d~p~pDW~qLtGliHDLGKvl 146 (244)
|++.++.++|...+++ ....|.+.+|...+. -+-+++-..+.||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8889999999987653 577899998877542 333456678999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=86.60 E-value=0.38 Score=42.06 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCccccHHHHHHHhhh--------------hcCCCCCCCCc-hHHHHHHHHHHHHHh---hC--CCCCcceecccccc
Q 026080 82 KLNRVEMSIWECCELLND--------------VVDESDPDLDE-PQIEHLLQTAEAIRK---DY--PDEDWLHLTGLIHD 141 (244)
Q Consensus 82 ~~~~~~MsI~EA~e~Ln~--------------lVDeSDPD~d~-~~i~H~lQTAEaiR~---d~--p~pDW~qLtGliHD 141 (244)
++.+.--||.+|+-+|-. .........+. .-..|.+.+|..++. .. ++++-.-++||+||
T Consensus 74 ~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHD 153 (305)
T 3hc1_A 74 SAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHD 153 (305)
T ss_dssp HTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455667788888776541 12222233333 335999999887653 22 24566789999999
Q ss_pred cccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhHHHHH
Q 026080 142 LGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVA 221 (244)
Q Consensus 142 LGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vl 221 (244)
+||+.....+. +.|. .++ +.-...|. +. .-.+.-.|-..|.++=+.++
T Consensus 154 IGkl~l~~~~p---------~~~~-------~il--~~~~~~~~---~l-----------~~~E~~~~~~~H~~iG~~ll 201 (305)
T 3hc1_A 154 VGEVFINFFRG---------KEFS-------QVV--TLVDEEKI---TF-----------GQAEERLFGTSHCEVGFALA 201 (305)
T ss_dssp HHHHHHHHHSH---------HHHH-------HHH--HHHHHHCC---CH-----------HHHHHHHHSSCHHHHHHHHH
T ss_pred hhHHHHHHHHH---------HHHH-------HHH--HHHHhcCC---CH-----------HHHHHHHHCCCHHHHHHHHH
Confidence 99998531110 1111 000 00000000 00 01123345557999999999
Q ss_pred hhCCCCCChhHHHHHHhcc
Q 026080 222 KENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 222 k~n~~tLP~eaL~mIRyHS 240 (244)
++ ..+|++...+||+|-
T Consensus 202 ~~--w~lp~~i~~~I~~HH 218 (305)
T 3hc1_A 202 KR--WSLNEFICDTILYHH 218 (305)
T ss_dssp HH--TTCCHHHHHHHHHTT
T ss_pred HH--cCCCHHHHHHHHHhC
Confidence 87 578999999999984
No 7
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=84.91 E-value=0.71 Score=39.77 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=71.0
Q ss_pred hcCCCCccccHHHHHHHhh--------------hhcCCCCCCCC--c-hHHHHHHHHHHHHH---h--------hCCCCC
Q 026080 80 YGKLNRVEMSIWECCELLN--------------DVVDESDPDLD--E-PQIEHLLQTAEAIR---K--------DYPDED 131 (244)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln--------------~lVDeSDPD~d--~-~~i~H~lQTAEaiR---~--------d~p~pD 131 (244)
|.++.+.--||.+|+-+|- .+.+...|-.. + .-..|.+.+|..++ + ...+++
T Consensus 69 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~ 148 (281)
T 3i7a_A 69 LYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYD 148 (281)
T ss_dssp TTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHH
T ss_pred HhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 4456677789999988753 12333222211 1 23589988876543 2 123456
Q ss_pred cceecccccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceecccc
Q 026080 132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 211 (244)
Q Consensus 132 W~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSW 211 (244)
-.-++||+||+||+...... +.+| +.+. + +. -++ -.+..
T Consensus 149 ~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~-~-----~~------------~~~-~~~~~ 187 (281)
T 3i7a_A 149 TLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT-T-----IE------------HLR-SLVRK 187 (281)
T ss_dssp HHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC-C-----HH------------HHH-HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc-C-----hH------------HHH-HHHhC
Confidence 77899999999998753100 0111 1111 0 00 011 12344
Q ss_pred CchhhHHHHHhhCCCCCChhHHHHHHhcc
Q 026080 212 GHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 212 gHDEYlY~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
.|.+.=+.++++. .+|++-..+||+|-
T Consensus 188 ~H~~iGa~ll~~w--~lp~~i~~ai~~Hh 214 (281)
T 3i7a_A 188 MQGPIGRAVLKSW--DFAPEVMEVVERWA 214 (281)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHC--CCCHHHHHHHHHHc
Confidence 6999999999974 79999999999985
No 8
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=83.40 E-value=0.6 Score=38.86 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh-hCCCCCcceeccccccccccc
Q 026080 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 92 EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKvl 146 (244)
++.+.+...+...|+.-++.-+...+.+|..|.+ .+.+++-+.+.+|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 3444455555444455555555555566666665 345777889999999999964
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=82.13 E-value=0.74 Score=38.88 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHhhhhcCCCCCCCCchHHHHHHHHH---HHH-Hh-hCCCCCcceeccccccccc
Q 026080 91 WECCELLNDVVDESDPDLDEPQIEHLLQTA---EAI-RK-DYPDEDWLHLTGLIHDLGK 144 (244)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTA---Eai-R~-d~p~pDW~qLtGliHDLGK 144 (244)
.++.+.+...+...++.- .+.|.+..+ ..| .+ .+.+++-+.+.+|+||+||
T Consensus 8 ~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 8 KKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 344444555554333333 456665554 445 44 3347778899999999998
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=81.85 E-value=0.83 Score=39.21 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh-hCCCCCcceeccccccccccc
Q 026080 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKvl 146 (244)
|..+.+.+.......|+.-++.-+.-...+|..|-+ .+.+++-+.+.+|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 444555566666655666666666666677777643 344667789999999999964
No 11
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=81.18 E-value=0.67 Score=40.33 Aligned_cols=125 Identities=14% Similarity=0.239 Sum_probs=72.3
Q ss_pred hcCCCCccccHHHHHHHhhh-----------hcCC--CCC--CCCch-HHHHHHHHHHHHHhh---C--CCCCcceeccc
Q 026080 80 YGKLNRVEMSIWECCELLND-----------VVDE--SDP--DLDEP-QIEHLLQTAEAIRKD---Y--PDEDWLHLTGL 138 (244)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln~-----------lVDe--SDP--D~d~~-~i~H~lQTAEaiR~d---~--p~pDW~qLtGl 138 (244)
+.++.+.--||.+|+-+|=. +.+. +.| ..++. -..|.+++|..+|.- . ++++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 33456677899999876531 1111 112 12333 358999999876632 2 24567789999
Q ss_pred ccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhHH
Q 026080 139 IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMY 218 (244)
Q Consensus 139 iHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY 218 (244)
+||+||+++...+ | +.|. +.+... . ..+. .-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~---p------~~~~------------~il~~~-~--------~~~l----~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAW---P------EEYS------------ECLRKA-D--------GEAL----IALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHC---H------HHHH------------HHHHHC-C--------HHHH----HHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHH---H------HHHH------------HHHHHh-h--------cCCH----HHHHHHHHccCHHHHHH
Confidence 9999999854111 1 0110 000000 0 0000 11233345568999999
Q ss_pred HHHhhCCCCCChhHHHHHHhcc
Q 026080 219 LVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 219 ~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
.+++. -.||++-..+||||-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99987 479999999999984
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=80.89 E-value=0.71 Score=39.57 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhh-CCCCCcceecccccccccc
Q 026080 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d-~p~pDW~qLtGliHDLGKv 145 (244)
|..+.+.+.......|+.-++.-+.-...+|..|-+. +.+++-+.+.+|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 3444555556665556666666666666677777543 4466788999999999984
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=78.88 E-value=0.84 Score=38.76 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=38.8
Q ss_pred ccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHh-hCCCCCcceecccccccccc
Q 026080 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKv 145 (244)
+-|.++.+.+...+...++.-++.-+.-.++.|..|.+ .+.+++-+.+.+|+||+||.
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDD 68 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcc
Confidence 34566666666666654555555555555666666665 34567788999999999984
No 14
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=75.94 E-value=0.23 Score=46.43 Aligned_cols=128 Identities=14% Similarity=0.249 Sum_probs=72.1
Q ss_pred hcCCCCccccHHHHHH-Hh--h---h------hcC---CC-CCCCC-chHHHHHHHHHHHHHh---hC-----CCCCcce
Q 026080 80 YGKLNRVEMSIWECCE-LL--N---D------VVD---ES-DPDLD-EPQIEHLLQTAEAIRK---DY-----PDEDWLH 134 (244)
Q Consensus 80 ~~~~~~~~MsI~EA~e-~L--n---~------lVD---eS-DPD~d-~~~i~H~lQTAEaiR~---d~-----p~pDW~q 134 (244)
|.++.+.--||.+|+- +| + + +.+ .+ +...+ ..-..|.+.+|..++. .. ++++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345567789999987 32 1 1 122 11 11112 2456899988877553 22 2334567
Q ss_pred ecccccccccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCch
Q 026080 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHD 214 (244)
Q Consensus 135 LtGliHDLGKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHD 214 (244)
++||+||+||+++...+ |+. |. .+. +....+|.. + -.-.++-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i~--~~~~~~~~~--~-----------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LVC--RSLEVSPHI--D-----------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HHH--HHHHHCTTS--C-----------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HHH--HHHHhcCCC--C-----------HHHHHHHHHcCCHH
Confidence 99999999999954111 111 00 000 000011100 0 00123334667899
Q ss_pred hhHHHHHhhCCCCCChhHHHHHHhcc
Q 026080 215 DYMYLVAKENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 215 EYlY~Vlk~n~~tLP~eaL~mIRyHS 240 (244)
+.=+.++++. .||++-...||||-
T Consensus 359 ~vGa~Ll~~W--~lP~~i~~aI~~HH 382 (457)
T 3mem_A 359 QIAAQLMENW--GMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHhc
Confidence 9999999874 79999999999984
No 15
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=73.22 E-value=1.4 Score=37.90 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCCCccccHHHHHHHhhh--------------hcCCCCCCCCchH-HHHHHHHHHHHHh----hCCCCCcceeccccccc
Q 026080 82 KLNRVEMSIWECCELLND--------------VVDESDPDLDEPQ-IEHLLQTAEAIRK----DYPDEDWLHLTGLIHDL 142 (244)
Q Consensus 82 ~~~~~~MsI~EA~e~Ln~--------------lVDeSDPD~d~~~-i~H~lQTAEaiR~----d~p~pDW~qLtGliHDL 142 (244)
++.+.--||.+|+-+|=. ..+. .|..++.. ..|.+.+|..++. -+.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 345566788888776431 2222 23344444 4799998877542 33456777899999999
Q ss_pred ccccccCCCCCCCCeeEeccceecccccCCCcccccccccCCCCCCCccccccCcccCCCCcceeccccCchhhHHHHHh
Q 026080 143 GKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAK 222 (244)
Q Consensus 143 GKvl~l~~~~~~~QWavVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Ynt~~GiY~~~CGLdnv~mSWgHDEYlY~Vlk 222 (244)
||++....+ |.+. . .+. +..+ . . .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~------~-------~i~--~~~~-~-~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVA------A-------TIS--AAVA-D-G--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHH------H-------HHH--HHHH-T-T--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHH------H-------HHH--HHHh-C-C--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999854111 1110 0 000 0000 0 0 000 012233455679999999999
Q ss_pred hCCCCCChhHHHHHHhcc
Q 026080 223 ENKTTLPSAALFIIRYHS 240 (244)
Q Consensus 223 ~n~~tLP~eaL~mIRyHS 240 (244)
+. .||++-...||||-
T Consensus 188 ~W--~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 SW--KFTPHLVKGIQFQN 203 (275)
T ss_dssp HT--TCCHHHHHHHHTTT
T ss_pred HC--CCCHHHHHHHHHhC
Confidence 74 79999999999984
No 16
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=71.10 E-value=2.8 Score=34.68 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHH---HHh-hCCCCCcceecccccccccc
Q 026080 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEA---IRK-DYPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEa---iR~-d~p~pDW~qLtGliHDLGKv 145 (244)
+.++.+.+.......|+..+ ..|.+.++.. |-+ .+.+++-+.+.||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 34455555555543344433 4565555544 433 33456678999999999874
No 17
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=68.06 E-value=1.5 Score=38.78 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHHhh----------------CCC----CCcceecccccccccccccCCCC
Q 026080 109 DEPQIEHLLQTAEAIRKD----------------YPD----EDWLHLTGLIHDLGKVLNLPSFG 152 (244)
Q Consensus 109 d~~~i~H~lQTAEaiR~d----------------~p~----pDW~qLtGliHDLGKvl~l~~~~ 152 (244)
..|.+.|++-||+..+.- +.. ..|+...|++||+||.- +.|.
T Consensus 23 ~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~fq 84 (265)
T 3sk9_A 23 FHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVFQ 84 (265)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGGC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHHH
Confidence 389999999999885541 211 25888899999999995 4454
No 18
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=64.67 E-value=2.8 Score=37.23 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=21.5
Q ss_pred CchhhHHHHHhhCCCCCChhHHHHHHhc
Q 026080 212 GHDDYMYLVAKENKTTLPSAALFIIRYH 239 (244)
Q Consensus 212 gHDEYlY~Vlk~n~~tLP~eaL~mIRyH 239 (244)
.|.++=|.++.. ...+|++.+.+||+|
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~H 257 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQH 257 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHh
Confidence 388999994433 357999999999999
No 19
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=63.76 E-value=1.6 Score=41.52 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=27.6
Q ss_pred chHHHHHHH-H---HHHHHhhCCCC-----Ccceeccccccccccc
Q 026080 110 EPQIEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVL 146 (244)
Q Consensus 110 ~~~i~H~lQ-T---AEaiR~d~p~p-----DW~qLtGliHDLGKvl 146 (244)
=.-++|.|. + |.++++.||.- +=+-..||+||+||++
T Consensus 74 GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 74 CSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 356799999 6 56788888631 1346678999999997
No 20
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=59.95 E-value=4.5 Score=34.91 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCccccHHHHHHHhhh-----------hcCCCCCCCCch------HHHHHHHHHHHHHhhCCC--
Q 026080 69 TYDFVKKMREEYGKLNRVEMSIWECCELLND-----------VVDESDPDLDEP------QIEHLLQTAEAIRKDYPD-- 129 (244)
Q Consensus 69 Tvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~-----------lVDeSDPD~d~~------~i~H~lQTAEaiR~d~p~-- 129 (244)
|....+-.-.-+.++.+.--||.+|+.+|-. +.+.-..+.+-. -..|.+.+|..+++-...
T Consensus 65 s~~lLr~aNS~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~ 144 (297)
T 1vqr_A 65 TAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDED 144 (297)
T ss_dssp HHHHHHHHTSGGGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred ---CCcceeccccccccccc
Q 026080 130 ---EDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 130 ---pDW~qLtGliHDLGKvl 146 (244)
++=.-+.||+||+||+.
T Consensus 145 ~~~~e~a~~aGLLHDIGkl~ 164 (297)
T 1vqr_A 145 KKLSHLLVPCAMLLRLGIVI 164 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccHHH
No 21
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=40.49 E-value=24 Score=22.04 Aligned_cols=26 Identities=31% Similarity=0.499 Sum_probs=21.9
Q ss_pred ccccCchhhHHHHHhhCCCCCChhHHHHHHhccc
Q 026080 208 MMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (244)
Q Consensus 208 ~mSWgHDEYlY~Vlk~n~~tLP~eaL~mIRyHSF 241 (244)
--||--..+--+|||. -|+|+|-|.|
T Consensus 5 pkswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 5 PKSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SSCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred CcchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 3588888888899986 5999999987
No 22
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=38.04 E-value=14 Score=33.99 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHhh----CCCC-Ccceeccccccccccc
Q 026080 110 EPQIEHLLQTAEAIRKD----YPDE-DWLHLTGLIHDLGKVL 146 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d----~p~p-DW~qLtGliHDLGKvl 146 (244)
-...+|.+.+|...|+- +-++ .-..++||+||+|+..
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~p 90 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPP 90 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Confidence 45688988888876542 2122 3578999999999976
No 23
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=37.64 E-value=32 Score=28.37 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhcCCCC-CC-CCchHHHHHHHHHHHHHhhCCCCCc-ceecccccccc
Q 026080 90 IWECCELLNDVVDESD-PD-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLG 143 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSD-PD-~d~~~i~H~lQTAEaiR~d~p~pDW-~qLtGliHDLG 143 (244)
|.+|+++-.......- .+ ...|-|.|.+.+|+.+..+.+-.|. ...+||+||.=
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvv 65 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVV 65 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHH
Confidence 4445555444433332 22 4578999999999999855432244 34689999863
No 24
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=36.37 E-value=13 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.7
Q ss_pred Ccceeccccccccccc
Q 026080 131 DWLHLTGLIHDLGKVL 146 (244)
Q Consensus 131 DW~qLtGliHDLGKvl 146 (244)
+++-++++.||+||.-
T Consensus 57 ~ll~~a~llHDiGKa~ 72 (244)
T 3m5f_A 57 EFMKILIKLHDIGKAS 72 (244)
T ss_dssp HHHHHHHHHTTGGGGB
T ss_pred HHHHHHHHHcccccCC
Confidence 4567899999999987
No 25
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=35.55 E-value=33 Score=28.34 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCCCc-ceecccccccc
Q 026080 109 DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLG 143 (244)
Q Consensus 109 d~~~i~H~lQTAEaiR~d~p~pDW-~qLtGliHDLG 143 (244)
..|-|.|.+.+|+.+..+.+-.|. ...+||+||.=
T Consensus 28 G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvv 63 (178)
T 3nr1_A 28 GTPYINHPIGVARILTHEAGITDIVVLQAALLHDTV 63 (178)
T ss_dssp CCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHH
Confidence 478899999999999655432354 46789999863
No 26
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=34.14 E-value=11 Score=32.63 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.1
Q ss_pred CCCCCchHHHHHHHHHHHHHhh-CCCCCcceecccccccccc
Q 026080 105 DPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKV 145 (244)
Q Consensus 105 DPD~d~~~i~H~lQTAEaiR~d-~p~pDW~qLtGliHDLGKv 145 (244)
|+.-++.-+.-.+.+|..|-+. +.+++-+.+.+|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 3333444444455555555432 3567788999999999996
No 27
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=30.92 E-value=11 Score=32.19 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHhhCC-CCCc--ceecccccccccccccCCCCCCCCeeEeccceec
Q 026080 110 EPQIEHLLQTAEAIRKDYP-DEDW--LHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR~d~p-~pDW--~qLtGliHDLGKvl~l~~~~~~~QWavVGDTfPv 166 (244)
.+.-+|.+++|-..---.+ .-|+ .-..+|+|||+.++ +||+.|+
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 4677899998876443221 2343 45678999999877 5788664
No 28
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=30.06 E-value=15 Score=30.65 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHH---HHhhCCCCCc-----ceeccccccccccc
Q 026080 110 EPQIEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 146 (244)
Q Consensus 110 ~~~i~H~lQTAEa---iR~d~p~pDW-----~qLtGliHDLGKvl 146 (244)
.+..+|.+++|-. +-. ++.-|+ ....+|+||++.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 4677899988876 333 244677 35679999999987
No 29
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=28.56 E-value=18 Score=30.42 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHH-------hhC-CCCCcc--eecccccccccccc
Q 026080 110 EPQIEHLLQTAEAIR-------KDY-PDEDWL--HLTGLIHDLGKVLN 147 (244)
Q Consensus 110 ~~~i~H~lQTAEaiR-------~d~-p~pDW~--qLtGliHDLGKvl~ 147 (244)
.+..+|.+++|-... +.. +.-|+- .+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 466789999886521 222 233544 56699999999983
No 30
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=27.87 E-value=13 Score=22.82 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=8.1
Q ss_pred HHHHhcccc
Q 026080 234 FIIRYHSFY 242 (244)
Q Consensus 234 ~mIRyHSFY 242 (244)
.|+|.|||+
T Consensus 15 ~Mlr~~sf~ 23 (26)
T 1ckk_B 15 SMLRKRSFG 23 (26)
T ss_dssp HHCSSSCCC
T ss_pred HHhhccccc
Confidence 699999997
No 31
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=27.50 E-value=51 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHhhhhcCC-------CCCCCCchHHHHHHHHHHHH
Q 026080 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDE-------SDPDLDEPQIEHLLQTAEAI 123 (244)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDe-------SDPD~d~~~i~H~lQTAEai 123 (244)
+++...+|.+.-|.+-++.+|++.|..|-.+ .+...+.-.+.+++.+|+.|
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~ 500 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELI 500 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 4556667788888888999999999886421 12222345788999999985
No 32
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=25.15 E-value=19 Score=33.43 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHh----hCCCCCcceeccccccccccc
Q 026080 111 PQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (244)
Q Consensus 111 ~~i~H~lQTAEaiR~----d~p~pDW~qLtGliHDLGKvl 146 (244)
+.++|-+-+|...|. -+-+++-....||+||+|+.-
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTCCS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCc
Confidence 445565555544332 222445678899999999853
No 33
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=24.74 E-value=37 Score=31.73 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhhCCCCCcceecccccccc
Q 026080 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLG 143 (244)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d~p~pDW~qLtGliHDLG 143 (244)
|.+|+++-.......-.....|-|.|.+.+|+.+..-+-+++ ...+||+||.-
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDvv 80 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDVV 80 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTHH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhHH
Confidence 455555554443333223447889999999999987654333 46789999953
No 34
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=21.90 E-value=22 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHH-HHhhCCCCCcceeccccc-cccccc
Q 026080 111 PQIEHLLQTAEA-IRKDYPDEDWLHLTGLIH-DLGKVL 146 (244)
Q Consensus 111 ~~i~H~lQTAEa-iR~d~p~pDW~qLtGliH-DLGKvl 146 (244)
...+|.+++.+. |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 456888887554 666666677899999999 999953
No 35
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.96 E-value=27 Score=32.71 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.3
Q ss_pred ceeccccccccccc
Q 026080 133 LHLTGLIHDLGKVL 146 (244)
Q Consensus 133 ~qLtGliHDLGKvl 146 (244)
..++||+||+|+-=
T Consensus 89 ~~~AaLlHDiGh~P 102 (410)
T 2q14_A 89 VQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHTTTTCCT
T ss_pred HHHHHHHhccCCCc
Confidence 46889999999854
No 36
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=20.58 E-value=1.1e+02 Score=25.26 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCCC---CccccHHHHHHHhhhhcCCCCCCCCchHHHHHHHHHHHHHhh
Q 026080 69 TYDFVKKMREEYGKLN---RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD 126 (244)
Q Consensus 69 Tvdfv~~~~~~~~~~~---~~~MsI~EA~e~Ln~lVDeSDPD~d~~~i~H~lQTAEaiR~d 126 (244)
|-.=..++|++|-.-- -++.-||+|+..--.++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 4445667899987644 468889999988887765544 5778887654
Done!