BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026082
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG SMNPA +FG A + NW N W +YW+ P GA LA +++++F
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHW----IYWVGPIIGAVLAGALYEYVF 269
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG SMNPA +FG A + NW N W +YW+ P GA LA +++++F
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHW----IYWVGPIIGAVLAGALYEYVF 230
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG SMNPA +FG A + NW N W +YW+ P GA LA +++++F
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHW----IYWVGPIIGAVLAGALYEYVF 230
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG SMNPA +FG A + NW N W +YW+ P GA LA +++++F
Sbjct: 176 YTGASMNPARSFGPAVIMGNWENHW----IYWVGPIIGAVLAGGLYEYVF 221
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 183 TGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
TG +NPA +FG A + N + WD +++W+ PF GA +AA +++ A
Sbjct: 217 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 266
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 183 TGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
TG +NPA +FG A + N + WD +++W+ PF GA +AA +++ A
Sbjct: 240 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 183 TGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
TG +NPA +FG A + N + WD +++W+ PF GA +AA +++ A
Sbjct: 240 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 183 TGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
TG +NPA +FG A + N + WD +++W+ PF GA +AA +++ A
Sbjct: 236 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 285
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 183 TGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
TG +NPA +FG A + N + WD +++W+ PF GA +AA +++ A
Sbjct: 217 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 266
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG +NPA +FG A + +N+ N W ++W+ PF G LA ++ F+
Sbjct: 186 YTGCGINPARSFGSAVITHNFSNHW----IFWVGPFIGGALAVLIYDFIL 231
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
YTG +NPA +FG + + +N+ + W ++W+ PF GA LA ++ F+
Sbjct: 188 YTGCGINPARSFGSSVITHNFQDHW----IFWVGPFIGAALAVLIYDFIL 233
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 182 YTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWV-FKFLFP 231
+TG SMNPA +FG A V N + +V+W+ P GA LAA + F LFP
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILYFYLLFP 228
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKF-LFP 231
YTG MNPA +F A + N+ N W VYW+ P GA L + ++ F LFP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHW----VYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKF-LFP 231
YTG MNPA +F A + N+ N W VYW+ P GA L + ++ F LFP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHW----VYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKF-LFP 231
YTG MNPA +F A + N+ N W VYW+ P GA L + ++ F LFP
Sbjct: 174 YTGAGMNPARSFAPAILTRNFTNHW----VYWVGPVIGAGLGSLLYDFLLFP 221
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 183 TGPSMNPANAFGWAYVNN---WHNTWDLFYVYWICPFFGAFLAAWVFKFL 229
TG S+NPA FG Y+ + N W F +Y I P GA AAW++ +L
Sbjct: 195 TGSSLNPARTFG-PYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKF-LFP 231
YTG MNPA +F A + N+ N W VYW+ P GA L + ++ F LFP
Sbjct: 172 YTGAGMNPARSFAPAILTRNFTNHW----VYWVGPVIGAGLGSLLYDFLLFP 219
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 183 TGPSMNPANAFGWAYVNNW----HNTWDLFYVYWICPFFGAFLAAWVFKFL 229
+G S+NPA FG Y+N+ + W+ + +Y I P GA LAA +++L
Sbjct: 194 SGSSLNPARTFG-PYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
Query: 182 YTGPSMNPANAFGWAYVN----NWHNTWDLFYVYWICPFFGAFLA 222
YTG +NPA +FG A N+H ++YW+ P GAFLA
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYH------WIYWLGPILGAFLA 256
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 183 TGPSMNPANAFG---WAYVNNWHN---TWDLFYVYWICPFFGAFLAAWVFKFLF 230
TG +MNPA FG +A++ W N T Y++ P FG + A V F +
Sbjct: 198 TGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 183 TGPSMNPANAFG---WAYVNNWHN---TWDLFYVYWICPFFGAFLAAWVFKFLF 230
TG +MNPA FG +A++ W N T Y++ P FG + A V F +
Sbjct: 198 TGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.143 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,922,547
Number of Sequences: 62578
Number of extensions: 186918
Number of successful extensions: 387
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 27
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)