Query 026083
Match_columns 243
No_of_seqs 218 out of 512
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202 U2 snRNP splicing fact 100.0 2.1E-37 4.6E-42 278.7 8.9 120 1-120 51-201 (260)
2 KOG0147 Transcriptional coacti 99.0 3.9E-10 8.5E-15 111.0 4.9 43 30-72 490-532 (549)
3 TIGR01622 SF-CC1 splicing fact 98.9 6.9E-10 1.5E-14 103.3 4.5 44 30-73 410-453 (457)
4 TIGR01645 half-pint poly-U bin 98.9 1.2E-09 2.5E-14 109.5 5.2 42 31-72 566-607 (612)
5 PF13893 RRM_5: RNA recognitio 98.8 1.8E-08 3.9E-13 69.3 6.4 35 31-65 22-56 (56)
6 KOG4207 Predicted splicing fac 98.7 4.9E-08 1.1E-12 88.0 9.6 62 9-70 15-95 (256)
7 TIGR01642 U2AF_lg U2 snRNP aux 98.7 9.7E-09 2.1E-13 96.7 5.0 43 30-72 464-506 (509)
8 smart00361 RRM_1 RNA recogniti 98.7 2.7E-08 5.9E-13 72.0 4.8 34 30-63 37-70 (70)
9 KOG0107 Alternative splicing f 98.7 2.4E-07 5.2E-12 81.5 10.8 58 11-68 14-85 (195)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.6 8.7E-08 1.9E-12 85.9 7.3 55 13-67 275-348 (352)
11 PLN03134 glycine-rich RNA-bind 98.6 1.6E-07 3.5E-12 77.8 6.8 53 13-65 40-111 (144)
12 PF00076 RRM_1: RNA recognitio 98.4 4.3E-07 9.2E-12 62.5 4.8 48 14-61 5-70 (70)
13 smart00360 RRM RNA recognition 98.3 1.6E-06 3.6E-11 57.5 6.0 48 16-63 5-71 (71)
14 KOG0120 Splicing factor U2AF, 98.3 5.6E-07 1.2E-11 88.7 4.8 42 30-71 454-495 (500)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.3 1.5E-06 3.3E-11 77.9 6.9 55 11-65 7-80 (352)
16 PF14259 RRM_6: RNA recognitio 98.3 2.5E-06 5.4E-11 60.0 6.5 47 15-61 6-70 (70)
17 TIGR01659 sex-lethal sex-letha 98.3 2.7E-06 5.8E-11 79.8 7.8 52 14-65 114-184 (346)
18 smart00362 RRM_2 RNA recogniti 98.2 4.1E-06 9E-11 55.9 6.1 48 16-63 8-72 (72)
19 cd00590 RRM RRM (RNA recogniti 98.2 5.1E-06 1.1E-10 55.7 6.2 50 15-64 7-74 (74)
20 TIGR01628 PABP-1234 polyadenyl 98.1 4.9E-06 1.1E-10 80.4 6.4 55 12-66 290-362 (562)
21 KOG1548 Transcription elongati 98.1 6E-06 1.3E-10 78.7 5.8 43 30-72 314-357 (382)
22 TIGR01648 hnRNP-R-Q heterogene 98.0 1.2E-05 2.6E-10 80.6 6.8 54 13-66 239-305 (578)
23 COG0724 RNA-binding proteins ( 98.0 1.7E-05 3.7E-10 63.9 6.2 55 12-66 120-193 (306)
24 TIGR01622 SF-CC1 splicing fact 98.0 1.7E-05 3.6E-10 74.2 6.7 55 12-66 191-264 (457)
25 TIGR01659 sex-lethal sex-letha 97.9 1.7E-05 3.6E-10 74.6 6.3 56 12-67 198-274 (346)
26 KOG1996 mRNA splicing factor [ 97.9 7.3E-06 1.6E-10 77.2 3.3 43 30-72 329-371 (378)
27 KOG0110 RNA-binding protein (R 97.9 3.7E-05 8.1E-10 78.4 8.5 90 14-109 522-637 (725)
28 PLN03120 nucleic acid binding 97.9 2.5E-05 5.3E-10 71.8 6.2 55 12-67 9-79 (260)
29 TIGR01642 U2AF_lg U2 snRNP aux 97.9 2.6E-05 5.5E-10 73.8 6.4 54 14-67 302-374 (509)
30 KOG0122 Translation initiation 97.8 3.4E-05 7.3E-10 70.9 5.5 55 12-66 194-267 (270)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.7 5.9E-05 1.3E-09 72.7 6.4 53 15-67 283-350 (481)
32 TIGR01628 PABP-1234 polyadenyl 97.7 5.8E-05 1.3E-09 73.1 6.2 55 12-66 5-78 (562)
33 KOG0124 Polypyrimidine tract-b 97.7 2.9E-05 6.3E-10 75.2 3.6 43 30-72 497-539 (544)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.6 0.00011 2.4E-09 70.8 6.7 56 12-67 7-77 (481)
35 TIGR01645 half-pint poly-U bin 97.5 0.0002 4.4E-09 72.4 6.8 54 12-65 209-281 (612)
36 KOG0108 mRNA cleavage and poly 97.4 0.00022 4.7E-09 69.6 6.0 60 11-70 22-100 (435)
37 PLN03121 nucleic acid binding 97.4 0.00025 5.5E-09 64.7 5.8 55 11-66 9-79 (243)
38 KOG0148 Apoptosis-promoting RN 97.3 0.0003 6.5E-09 65.8 5.0 91 15-108 70-187 (321)
39 KOG0148 Apoptosis-promoting RN 97.3 0.00045 9.7E-09 64.7 5.8 52 14-65 171-235 (321)
40 KOG0113 U1 small nuclear ribon 97.3 0.0013 2.7E-08 62.2 8.8 58 15-72 109-188 (335)
41 KOG0123 Polyadenylate-binding 97.2 0.00042 9E-09 66.0 5.3 59 11-70 80-155 (369)
42 TIGR01648 hnRNP-R-Q heterogene 97.2 0.00047 1E-08 69.3 5.4 55 11-65 62-135 (578)
43 KOG0109 RNA-binding protein LA 97.1 0.00046 1E-08 65.1 4.3 56 11-66 82-148 (346)
44 KOG0114 Predicted RNA-binding 97.1 0.00087 1.9E-08 55.5 5.1 54 13-66 24-93 (124)
45 PLN03213 repressor of silencin 97.1 0.00086 1.9E-08 67.3 5.5 54 12-65 15-85 (759)
46 KOG0127 Nucleolar protein fibr 96.9 0.0013 2.8E-08 66.4 5.6 61 12-72 122-201 (678)
47 smart00356 ZnF_C3H1 zinc finge 96.9 0.00074 1.6E-08 40.4 2.2 26 70-95 2-27 (27)
48 KOG0121 Nuclear cap-binding pr 96.8 0.0011 2.4E-08 56.6 3.6 63 12-78 41-122 (153)
49 KOG0130 RNA-binding protein RB 96.6 0.002 4.3E-08 55.6 3.4 53 16-68 81-152 (170)
50 COG5175 MOT2 Transcriptional r 96.5 0.0022 4.9E-08 61.9 3.7 71 33-109 168-241 (480)
51 PF00642 zf-CCCH: Zinc finger 96.5 0.00065 1.4E-08 42.1 -0.1 26 70-95 1-27 (27)
52 KOG0105 Alternative splicing f 96.5 0.0021 4.7E-08 57.8 3.1 58 12-69 11-84 (241)
53 KOG0117 Heterogeneous nuclear 96.3 0.005 1.1E-07 60.8 5.0 58 13-70 265-334 (506)
54 KOG0117 Heterogeneous nuclear 96.3 0.0063 1.4E-07 60.2 5.5 59 15-79 91-169 (506)
55 KOG4660 Protein Mei2, essentia 96.3 0.0023 4.9E-08 64.1 2.4 48 15-62 83-144 (549)
56 KOG0125 Ataxin 2-binding prote 96.2 0.0058 1.3E-07 58.6 4.3 50 16-65 105-171 (376)
57 KOG0415 Predicted peptidyl pro 96.1 0.0058 1.3E-07 59.4 3.8 84 17-100 249-357 (479)
58 KOG4208 Nucleolar RNA-binding 96.1 0.0088 1.9E-07 53.9 4.7 39 30-68 92-130 (214)
59 KOG0147 Transcriptional coacti 95.9 0.012 2.7E-07 59.0 5.5 53 13-65 284-355 (549)
60 KOG0145 RNA-binding protein EL 95.8 0.017 3.7E-07 54.4 5.5 52 14-65 48-118 (360)
61 KOG0111 Cyclophilin-type pepti 95.6 0.0098 2.1E-07 54.9 3.1 43 30-72 52-94 (298)
62 KOG0131 Splicing factor 3b, su 95.5 0.021 4.5E-07 51.1 4.7 60 12-71 101-180 (203)
63 KOG4209 Splicing factor RNPS1, 95.3 0.016 3.4E-07 52.2 3.3 50 15-65 109-177 (231)
64 KOG4206 Spliceosomal protein s 95.2 0.026 5.6E-07 51.2 4.3 55 12-66 14-88 (221)
65 KOG0123 Polyadenylate-binding 95.1 0.019 4.1E-07 54.9 3.3 52 15-66 278-347 (369)
66 KOG0145 RNA-binding protein EL 94.9 0.058 1.3E-06 50.9 6.1 50 16-65 287-355 (360)
67 KOG0131 Splicing factor 3b, su 94.8 0.019 4.2E-07 51.3 2.5 54 13-66 15-87 (203)
68 KOG0144 RNA-binding protein CU 94.7 0.03 6.4E-07 55.5 3.8 52 15-66 132-204 (510)
69 KOG0127 Nucleolar protein fibr 94.7 0.032 7E-07 56.6 4.0 57 9-65 7-82 (678)
70 KOG0124 Polypyrimidine tract-b 94.7 0.027 5.9E-07 55.1 3.3 49 16-64 122-189 (544)
71 KOG0106 Alternative splicing f 94.6 0.027 5.9E-07 50.8 2.9 53 14-66 8-71 (216)
72 KOG0106 Alternative splicing f 94.4 0.039 8.5E-07 49.8 3.4 51 12-62 104-165 (216)
73 KOG0149 Predicted RNA-binding 93.7 0.062 1.3E-06 49.5 3.3 56 11-67 16-90 (247)
74 PF11608 Limkain-b1: Limkain b 93.6 0.11 2.4E-06 41.4 4.2 38 30-67 39-76 (90)
75 KOG4212 RNA-binding protein hn 93.0 0.12 2.7E-06 51.6 4.4 38 30-67 86-123 (608)
76 KOG0144 RNA-binding protein CU 92.7 0.14 3.1E-06 50.9 4.3 52 13-64 40-113 (510)
77 PF08777 RRM_3: RNA binding mo 92.4 0.17 3.7E-06 40.3 3.8 49 16-64 10-76 (105)
78 KOG0126 Predicted RNA-binding 92.0 0.018 3.9E-07 51.7 -2.5 54 12-65 40-112 (219)
79 KOG4212 RNA-binding protein hn 91.8 0.25 5.4E-06 49.5 4.9 53 12-64 541-607 (608)
80 KOG0110 RNA-binding protein (R 91.8 0.12 2.7E-06 53.4 2.9 58 12-69 618-694 (725)
81 KOG0109 RNA-binding protein LA 91.7 0.36 7.9E-06 46.1 5.6 57 11-67 6-73 (346)
82 KOG0226 RNA-binding proteins [ 90.9 0.22 4.8E-06 46.7 3.3 48 16-63 199-265 (290)
83 KOG0533 RRM motif-containing p 90.8 0.54 1.2E-05 43.1 5.7 60 11-70 87-164 (243)
84 KOG1457 RNA binding protein (c 88.5 1.3 2.7E-05 41.3 6.2 53 15-67 42-117 (284)
85 KOG0146 RNA-binding protein ET 88.5 0.5 1.1E-05 45.0 3.7 37 17-53 29-83 (371)
86 KOG0153 Predicted RNA-binding 88.2 0.87 1.9E-05 44.2 5.2 58 15-74 236-307 (377)
87 KOG0132 RNA polymerase II C-te 87.4 1.1 2.4E-05 47.4 5.8 50 15-64 429-491 (894)
88 KOG4210 Nuclear localization s 85.9 0.64 1.4E-05 43.1 2.9 59 12-71 190-267 (285)
89 KOG4211 Splicing factor hnRNP- 85.8 0.94 2E-05 45.6 4.1 36 14-49 17-68 (510)
90 KOG2068 MOT2 transcription fac 85.1 0.26 5.7E-06 47.1 -0.1 58 33-96 128-186 (327)
91 PF04059 RRM_2: RNA recognitio 84.9 2.8 6E-05 33.5 5.7 27 30-56 45-71 (97)
92 KOG4211 Splicing factor hnRNP- 83.6 1.5 3.3E-05 44.1 4.4 74 15-89 111-212 (510)
93 KOG1190 Polypyrimidine tract-b 83.2 1.5 3.2E-05 43.7 4.2 54 15-68 422-491 (492)
94 KOG1190 Polypyrimidine tract-b 82.7 4.6 0.0001 40.4 7.3 61 17-77 308-382 (492)
95 KOG0146 RNA-binding protein ET 81.5 0.92 2E-05 43.2 2.0 50 16-65 294-362 (371)
96 PF11767 SET_assoc: Histone ly 81.2 2.5 5.3E-05 31.7 3.8 46 17-62 10-65 (66)
97 PF04847 Calcipressin: Calcipr 79.8 2.9 6.2E-05 36.7 4.3 50 21-70 9-73 (184)
98 KOG4368 Predicted RNA binding 79.5 5.5 0.00012 41.4 6.8 9 100-108 586-594 (757)
99 PF05172 Nup35_RRM: Nup53/35/4 79.1 3.5 7.6E-05 33.0 4.3 31 30-61 54-84 (100)
100 KOG1457 RNA binding protein (c 78.0 1.8 4E-05 40.3 2.7 43 12-54 215-272 (284)
101 KOG2591 c-Mpl binding protein, 77.9 1.5 3.3E-05 45.1 2.3 50 19-68 187-252 (684)
102 KOG1995 Conserved Zn-finger pr 76.9 2.7 5.8E-05 40.8 3.5 55 11-65 70-151 (351)
103 KOG1040 Polyadenylation factor 76.0 1.1 2.3E-05 42.8 0.7 27 69-95 74-100 (325)
104 KOG4454 RNA binding protein (R 75.8 1.4 3.1E-05 40.8 1.3 55 14-68 16-87 (267)
105 PF08952 DUF1866: Domain of un 73.4 8 0.00017 33.3 5.2 41 30-72 70-110 (146)
106 KOG1548 Transcription elongati 73.1 6.6 0.00014 38.4 5.1 57 11-67 138-220 (382)
107 KOG4206 Spliceosomal protein s 73.0 3.6 7.8E-05 37.6 3.2 42 15-56 154-209 (221)
108 KOG1847 mRNA splicing factor [ 71.9 1.7 3.8E-05 45.4 1.0 9 115-123 748-756 (878)
109 PF14605 Nup35_RRM_2: Nup53/35 71.8 3.7 8E-05 28.9 2.4 27 21-47 14-53 (53)
110 KOG4307 RNA binding protein RB 71.0 8 0.00017 41.1 5.5 52 13-64 873-943 (944)
111 KOG2314 Translation initiation 69.4 4.1 9E-05 42.1 3.0 29 30-58 105-133 (698)
112 PF10309 DUF2414: Protein of u 68.9 9.2 0.0002 28.5 4.0 36 11-50 12-62 (62)
113 KOG4676 Splicing factor, argin 67.4 5.5 0.00012 39.7 3.3 52 13-65 13-86 (479)
114 KOG0116 RasGAP SH3 binding pro 65.6 8.3 0.00018 38.1 4.2 52 12-64 293-363 (419)
115 KOG4205 RNA-binding protein mu 63.6 5.5 0.00012 37.8 2.5 51 14-65 104-173 (311)
116 KOG2494 C3H1-type Zn-finger pr 61.4 2.5 5.4E-05 40.7 -0.2 27 68-94 32-60 (331)
117 KOG4661 Hsp27-ERE-TATA-binding 60.5 11 0.00023 39.6 4.0 48 18-65 416-482 (940)
118 PF03880 DbpA: DbpA RNA bindin 60.0 5.8 0.00013 29.2 1.6 31 33-64 43-73 (74)
119 PF07576 BRAP2: BRCA1-associat 59.7 11 0.00024 30.6 3.3 26 32-57 56-81 (110)
120 KOG4205 RNA-binding protein mu 59.1 4.6 0.0001 38.3 1.1 58 12-70 11-88 (311)
121 KOG1677 CCCH-type Zn-finger pr 56.2 7.3 0.00016 35.6 1.9 38 62-99 167-205 (332)
122 KOG2416 Acinus (induces apopto 56.0 22 0.00048 37.2 5.4 67 11-77 448-531 (718)
123 KOG1763 Uncharacterized conser 56.0 4.3 9.3E-05 39.0 0.4 41 68-108 88-129 (343)
124 PF14608 zf-CCCH_2: Zinc finge 55.7 9 0.00019 22.1 1.5 18 75-94 2-19 (19)
125 COG5252 Uncharacterized conser 53.2 4.1 8.8E-05 38.2 -0.3 42 68-109 81-123 (299)
126 COG5152 Uncharacterized conser 53.1 7 0.00015 36.0 1.2 34 62-95 131-165 (259)
127 KOG2193 IGF-II mRNA-binding pr 42.8 32 0.0007 34.9 4.1 56 11-66 5-74 (584)
128 COG5084 YTH1 Cleavage and poly 39.9 18 0.00039 34.2 1.8 31 69-99 101-131 (285)
129 KOG4285 Mitotic phosphoprotein 39.1 49 0.0011 32.2 4.5 39 30-70 231-270 (350)
130 KOG1365 RNA-binding protein Fu 39.0 45 0.00098 33.5 4.4 36 14-49 168-225 (508)
131 KOG0120 Splicing factor U2AF, 38.6 25 0.00055 35.7 2.7 36 30-65 331-366 (500)
132 KOG2494 C3H1-type Zn-finger pr 36.2 26 0.00056 34.0 2.2 34 69-106 68-101 (331)
133 KOG1813 Predicted E3 ubiquitin 35.9 13 0.00028 35.6 0.2 29 67-95 181-210 (313)
134 KOG2888 Putative RNA binding p 34.5 20 0.00044 35.3 1.2 9 21-29 171-179 (453)
135 KOG1040 Polyadenylation factor 34.5 19 0.00041 34.6 1.0 42 60-101 92-135 (325)
136 KOG2296 Integral membrane prot 34.1 25 0.00054 36.8 1.9 55 179-234 563-617 (673)
137 KOG4368 Predicted RNA binding 33.5 36 0.00079 35.7 2.9 7 190-196 684-690 (757)
138 PRK13014 methionine sulfoxide 31.5 47 0.001 29.5 3.0 83 16-98 68-171 (186)
139 KOG1847 mRNA splicing factor [ 30.7 56 0.0012 34.8 3.7 23 81-103 689-711 (878)
140 KOG0151 Predicted splicing reg 29.7 43 0.00092 35.9 2.7 25 33-57 695-719 (877)
141 PRK14054 methionine sulfoxide 29.5 52 0.0011 28.8 2.8 58 16-73 63-140 (172)
142 PF11823 DUF3343: Protein of u 29.3 93 0.002 22.7 3.8 42 32-78 3-44 (73)
143 KOG1365 RNA-binding protein Fu 28.8 20 0.00043 35.9 0.2 62 15-76 288-370 (508)
144 PF03439 Spt5-NGN: Early trans 27.8 58 0.0013 24.7 2.5 28 30-57 44-71 (84)
145 PF13524 Glyco_trans_1_2: Glyc 26.5 1.4E+02 0.003 21.6 4.3 29 22-50 31-59 (92)
146 KOG0835 Cyclin L [General func 26.2 1.2E+02 0.0025 29.9 4.8 26 30-56 173-198 (367)
147 KOG0153 Predicted RNA-binding 26.2 31 0.00067 33.9 1.0 31 71-101 160-190 (377)
148 TIGR00401 msrA methionine-S-su 26.2 64 0.0014 27.5 2.8 57 16-73 60-137 (149)
149 PF02714 DUF221: Domain of unk 26.2 78 0.0017 28.6 3.5 33 33-67 1-33 (325)
150 KOG1456 Heterogeneous nuclear 26.1 51 0.0011 33.1 2.4 36 33-68 162-199 (494)
151 COG0225 MsrA Peptide methionin 25.8 87 0.0019 27.8 3.6 58 16-73 66-143 (174)
152 PF06373 CART: Cocaine and amp 24.8 32 0.00069 26.7 0.6 13 82-94 58-70 (73)
153 KOG4676 Splicing factor, argin 23.1 69 0.0015 32.2 2.7 10 51-60 113-122 (479)
154 PLN02435 probable UDP-N-acetyl 22.6 51 0.0011 33.4 1.7 36 37-72 427-473 (493)
155 COG0150 PurM Phosphoribosylami 22.2 1.4E+02 0.0031 29.2 4.6 44 19-62 288-335 (345)
156 KOG1456 Heterogeneous nuclear 21.4 2.1E+02 0.0045 28.9 5.6 75 30-104 325-421 (494)
157 KOG1677 CCCH-type Zn-finger pr 21.2 51 0.0011 30.1 1.4 34 66-99 126-161 (332)
158 KOG4019 Calcineurin-mediated s 20.9 1.4E+02 0.0031 27.0 4.0 36 30-65 51-87 (193)
159 PF08544 GHMP_kinases_C: GHMP 20.6 63 0.0014 23.0 1.5 25 30-54 59-83 (85)
160 PRK05528 methionine sulfoxide 20.6 1.1E+02 0.0023 26.5 3.1 57 16-73 56-129 (156)
161 PF08156 NOP5NT: NOP5NT (NUC12 20.5 93 0.002 23.0 2.4 30 22-51 27-65 (67)
162 PF06970 RepA_N: Replication i 20.3 67 0.0014 24.4 1.6 15 30-44 46-60 (76)
No 1
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=278.74 Aligned_cols=120 Identities=56% Similarity=0.951 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHhHcC------------------------------cccEEEEeCCHHHHHHHHHHh
Q 026083 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFE------------------------------VGNVYVQFREEEQAARALKSL 50 (243)
Q Consensus 1 mYqnP~~~~~~~d~~~~~~~~e~lqehFE------------------------------~GNVYVkF~~ee~A~~Ai~aL 50 (243)
|||||.+..+.+|+++..+++++||+||+ +|||||+|..+++|++|++.|
T Consensus 51 myq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~l 130 (260)
T KOG2202|consen 51 MYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDL 130 (260)
T ss_pred HHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHH
Confidence 89999999888888889999999999997 899999999999999999999
Q ss_pred CCceeCCeeeEEEeccCCCCCcccccccccCCCCCCCCCccCccccCCHHHHHHHhhcccccC-cCCCCCC
Q 026083 51 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH-SRSRSRS 120 (243)
Q Consensus 51 NGR~FaGR~I~vEfspVtdFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~~Lf~~~~~~~-~~~~srs 120 (243)
|+|||+|+||+|||+|||+|++|||++|+.+.|++|++|||||++.++++|.+.|+..+.+.. .++++++
T Consensus 131 nnRw~~G~pi~ae~~pvT~~rea~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~~~~~sra~~ 201 (260)
T KOG2202|consen 131 NNRWYNGRPIHAELSPVTDFREAICGQFERTECSRGGACNFMHVKRLSRSLRRELYGRQRKRYPRRSRARA 201 (260)
T ss_pred cCccccCCcceeeecCcCchhhhhhcccccccCCCCCcCcchhhhhhhHHHHHHhhhhhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999977654 3333333
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.98 E-value=3.9e-10 Score=110.98 Aligned_cols=43 Identities=37% Similarity=0.706 Sum_probs=41.1
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.|+|||+|.+++.|..|+++|+||||+||.|.|.|.|+++|..
T Consensus 490 ~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~ 532 (549)
T KOG0147|consen 490 AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHS 532 (549)
T ss_pred CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhh
Confidence 6999999999999999999999999999999999999998854
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.94 E-value=6.9e-10 Score=103.31 Aligned_cols=44 Identities=25% Similarity=0.583 Sum_probs=41.8
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
.|+|||+|.+.++|.+|+++||||||+||+|.|+|+|++.|..+
T Consensus 410 ~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 410 AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhh
Confidence 69999999999999999999999999999999999999998654
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.91 E-value=1.2e-09 Score=109.46 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=40.0
Q ss_pred ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 31 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 31 GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
|+|||+|.++++|.+|+++||||||+||+|.|+|++...|..
T Consensus 566 g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~ 607 (612)
T TIGR01645 566 VKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDH 607 (612)
T ss_pred EEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhc
Confidence 579999999999999999999999999999999999999864
No 5
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.79 E-value=1.8e-08 Score=69.29 Aligned_cols=35 Identities=37% Similarity=0.787 Sum_probs=34.1
Q ss_pred ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 31 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 31 GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
|++||+|.+.++|.+|+..|||++|.|++|.|+|+
T Consensus 22 ~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 22 GFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 99999999999999999999999999999999985
No 6
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.75 E-value=4.9e-08 Score=87.98 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 9 TPGVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 9 ~~~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
+-.||++++-+++++|...|| .||+||.|.+..+|++|+++|+|+..+|+.|.|+|.-...
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr 94 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGR 94 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCC
Confidence 346789999999999999999 8999999999999999999999999999999999864443
Q ss_pred C
Q 026083 70 F 70 (243)
Q Consensus 70 F 70 (243)
-
T Consensus 95 ~ 95 (256)
T KOG4207|consen 95 P 95 (256)
T ss_pred C
Confidence 3
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.74 E-value=9.7e-09 Score=96.74 Aligned_cols=43 Identities=21% Similarity=0.561 Sum_probs=40.3
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.|+|||+|.++++|++||.+|||++|+||+|.|+|++...|..
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence 3899999999999999999999999999999999999988853
No 8
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=2.7e-08 Score=72.02 Aligned_cols=34 Identities=44% Similarity=0.882 Sum_probs=32.6
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
.|++||.|.++++|.+|++.|||++|+||+|.|+
T Consensus 37 rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 37 RGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 7999999999999999999999999999999874
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=2.4e-07 Score=81.47 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
-|.+++..+++.+|...|. -||+||+|++..+|++|+.+|+|+-|.|-.|.|||+...
T Consensus 14 YVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 14 YVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred EeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5667889999999999998 799999999999999999999999999999999999653
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.62 E-value=8.7e-08 Score=85.89 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
-++...+++++|.++|+ .|++||.|.+.++|.+||.+|||.+|+||+|.|+|...
T Consensus 275 ~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 275 YNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34567789999999998 79999999999999999999999999999999999653
No 11
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.56 E-value=1.6e-07 Score=77.78 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|+++|+ .|+.||+|.++++|++||+.|||..++|++|.|++.
T Consensus 40 gnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred eCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45678899999999998 699999999999999999999999999999999885
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.41 E-value=4.3e-07 Score=62.53 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 026083 14 AQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPII 61 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~ 61 (243)
+++..+++++|.+.|+ .|.+||+|.+.++|++|++.|+|..|+|++|+
T Consensus 5 nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 5 NLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 3457789999999998 78999999999999999999999999999985
No 13
>smart00360 RRM RNA recognition motif.
Probab=98.33 E-value=1.6e-06 Score=57.47 Aligned_cols=48 Identities=33% Similarity=0.612 Sum_probs=43.2
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
+..+++++|.++|+ .|.+||+|.+.++|..|++.|++..|.|+.|.|+
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 45678899999997 4799999999999999999999999999999874
No 14
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=5.6e-07 Score=88.72 Aligned_cols=42 Identities=29% Similarity=0.687 Sum_probs=40.8
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
.|+|||+|.+.++|++|+.+|+||.|++|+|.|.|.++..|.
T Consensus 454 ~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 454 TGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred cccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 899999999999999999999999999999999999999884
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.30 E-value=1.5e-06 Score=77.90 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+.+++..+++++|.+.|. .|+.||+|.++++|++||..|||.++.|++|.+++.
T Consensus 7 ~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 7 IVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred EEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3456678899999999998 489999999999999999999999999999999986
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.29 E-value=2.5e-06 Score=60.00 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 026083 15 QGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPII 61 (243)
Q Consensus 15 ~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~ 61 (243)
.+..+++++|.+.|+ .|.+||+|.++++|..|++.++|.+|.|+.|.
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 355688999999998 59999999999999999999999999999984
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.26 E-value=2.7e-06 Score=79.83 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+...+++++|.++|+ .|++||+|.++++|++||..|||..+.+++|.|+++
T Consensus 114 nLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 114 YLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4578899999999998 489999999999999999999999999999999986
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=98.22 E-value=4.1e-06 Score=55.85 Aligned_cols=48 Identities=31% Similarity=0.613 Sum_probs=43.2
Q ss_pred CCCCCHHHHHhHcC-------------c----ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 16 GNPLDPRKIQEHFE-------------V----GNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------~----GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
+..++.++|+++|. . |.+||+|.+.++|+.|++.|+|..|.|++|.|+
T Consensus 8 ~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 8 PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 45678899999997 3 999999999999999999999999999999863
No 19
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.21 E-value=5.1e-06 Score=55.71 Aligned_cols=50 Identities=34% Similarity=0.653 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 15 QGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 15 ~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
++..+++++|.++|. .|.+||+|.+.++|..|++.|++.+|.|+.|.|.+
T Consensus 7 l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 7 LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 345578899999996 48999999999999999999999999999999864
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.11 E-value=4.9e-06 Score=80.45 Aligned_cols=55 Identities=29% Similarity=0.555 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|.++|+ .|++||.|.+.++|.+|+..|||.+|+|++|.|.+.-
T Consensus 290 V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 290 VKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred EeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 345567889999999998 5899999999999999999999999999999999864
No 21
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.06 E-value=6e-06 Score=78.69 Aligned_cols=43 Identities=30% Similarity=0.605 Sum_probs=39.1
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtdFre 72 (243)
.|.|-|.|.+.++|..||+.|+||||+||+|.|+++ .-+.|..
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeee
Confidence 788889999999999999999999999999999998 5567754
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.99 E-value=1.2e-05 Score=80.57 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|+++|+ .|++||+|.+.++|++||++|||..|+|++|.|+++.
T Consensus 239 gNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 239 RNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred eCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45677889999999997 7899999999999999999999999999999999984
No 23
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.98 E-value=1.7e-05 Score=63.89 Aligned_cols=55 Identities=29% Similarity=0.512 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|.++|. .|+.||.|.++++|..|+..|+|-+|.|++|.|.+..
T Consensus 120 v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 120 VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 445678899999999998 6999999999999999999999999999999999965
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.96 E-value=1.7e-05 Score=74.18 Aligned_cols=55 Identities=31% Similarity=0.519 Sum_probs=49.6
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|+++|+ .|++||+|.+.++|.+|+..|||..+.|++|.|.|..
T Consensus 191 v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 191 VGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 344567789999999998 4889999999999999999999999999999999964
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.94 E-value=1.7e-05 Score=74.56 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG--R~I~vEfspV 67 (243)
+.++...+++++|+++|+ .|++||+|.+.++|++||++||+..+.| ++|.|.+...
T Consensus 198 V~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 198 VTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred EeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 455678899999999997 4899999999999999999999999977 6888887643
No 26
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.91 E-value=7.3e-06 Score=77.20 Aligned_cols=43 Identities=28% Similarity=0.590 Sum_probs=39.7
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.--|||+|...++|.+|+-.||||||+||.|.|.|..+.+|+.
T Consensus 329 avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 329 AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred hheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 3457999999999999999999999999999999999999964
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=3.7e-05 Score=78.35 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHhHcC----------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 14 AQGNPLDPRKIQEHFE----------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE----------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
++.+.++.++|..+|. .|++||+|.++++|+.|+++|+|.-.+|..|.|.+|+ ..-
T Consensus 522 Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k~- 599 (725)
T KOG0110|consen 522 NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NKP- 599 (725)
T ss_pred cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Ccc-
Confidence 5567889999999997 3999999999999999999999999999999999999 222
Q ss_pred cccccccccCCCCCCCCCccCccccCCHHH----HHHHhhcc
Q 026083 72 EATCRQYEENTCNRGGYCNFMHLKRISRDL----RRQLFGRY 109 (243)
Q Consensus 72 eA~Crq~~~g~C~RGg~CNFmHv~~~sr~l----~~~Lf~~~ 109 (243)
...-+ -+|+.-..|+=|||+.+|-.. .++||..+
T Consensus 600 ~~~~g----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 600 ASTVG----KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred ccccc----cccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 22222 578888889999999998765 56777764
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.88 E-value=2.5e-05 Score=71.80 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|+.||.|.++++|+.|| .|||..+.|++|.|+...-
T Consensus 9 VgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 9 VSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 455678899999999998 589999999999999999 5999999999999999653
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.88 E-value=2.6e-05 Score=73.79 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
++...+++++|.+.|+ .|++||+|.+.++|..||..|||..+.|+.|.|.++-.
T Consensus 302 nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 302 NLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 3567789999999997 68999999999999999999999999999999999643
No 30
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=3.4e-05 Score=70.92 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++.+|++.|- .||+||.|.+.++|++||..|||.=|+-=.|.||++.
T Consensus 194 vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 194 VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred EecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456678899999999997 8999999999999999999999999999999999983
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.73 E-value=5.9e-05 Score=72.67 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=48.1
Q ss_pred CCC-CCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 15 QGN-PLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 15 ~~~-~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
++. .+++++|.++|+ .|++||+|.+.++|..||..|||.-+.|++|.|+++..
T Consensus 283 L~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 283 LHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 344 589999999998 59999999999999999999999999999999999744
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.72 E-value=5.8e-05 Score=73.08 Aligned_cols=55 Identities=27% Similarity=0.476 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|.++|. .|++||.|.+.++|++||..||+..+.|++|.+.++.
T Consensus 5 VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 345677899999999997 4899999999999999999999999999999998863
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=2.9e-05 Score=75.19 Aligned_cols=43 Identities=26% Similarity=0.610 Sum_probs=39.0
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
+-.|||+|....++.+|..+|+||||+||.|.+|+.....|..
T Consensus 497 iVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 497 IVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred hheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 4568999999999999999999999999999999988777754
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.64 E-value=0.00011 Score=70.83 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHh--CCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSL--SGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aL--NGR~FaGR~I~vEfspV 67 (243)
+.++...+++++|.+.|+ .|.+||+|.++++|++||+.| |+-.+.|++|.|+|+..
T Consensus 7 V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 7 VRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 345667899999999998 789999999999999999974 88999999999999853
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.50 E-value=0.0002 Score=72.38 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.++...+++++|.++|+ .|+.||+|.+.++|.+||..|||-.++|+.|.|..+
T Consensus 209 VgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 209 VASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred eecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 345567789999999997 689999999999999999999999999999999885
No 36
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.45 E-value=0.00022 Score=69.65 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
.+....+.+++++|-+.|. .|+.|++|.++++|+.|+..|||.-|.||+|.|+|..-.+-
T Consensus 22 ~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 22 FVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred EecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 3455678999999999998 89999999999999999999999999999999999765444
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.42 E-value=0.00025 Score=64.73 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+.++...+++++|++.|. .|+.||+|.++++|+.|+ .|||--+.+++|.++-++
T Consensus 9 ~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 9 EVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4667788999999999998 589999999999999999 899999999999988754
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0003 Score=65.81 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc-cc
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE-AT 74 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre-A~ 74 (243)
+...++-++|++.|- +|..||.|-+.++|+.||..|||.|+++|.|....+.-....+ .-
T Consensus 70 ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~ 149 (321)
T KOG0148|consen 70 LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGK 149 (321)
T ss_pred cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCC
Confidence 456678899999996 8999999999999999999999999999999877653222100 11
Q ss_pred cccccc-------CCCCCCCCCccCccccCCHHHHHHHhhc
Q 026083 75 CRQYEE-------NTCNRGGYCNFMHLKRISRDLRRQLFGR 108 (243)
Q Consensus 75 Crq~~~-------g~C~RGg~CNFmHv~~~sr~l~~~Lf~~ 108 (243)
-..||+ ..|. =||-=+-- ..+.+|.+++|..
T Consensus 150 ~ltfdeV~NQssp~Nts--VY~G~I~~-~lte~~mr~~Fs~ 187 (321)
T KOG0148|consen 150 PLTFDEVYNQSSPDNTS--VYVGNIAS-GLTEDLMRQTFSP 187 (321)
T ss_pred CccHHHHhccCCCCCce--EEeCCcCc-cccHHHHHHhccc
Confidence 111211 1222 13432211 4788999999876
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00045 Score=64.70 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.....++++.|+++|. .|..||+|.+.|.|..||..+||.-.+|.+|.|..-
T Consensus 171 ~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 171 NIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 3345689999999998 899999999999999999999999999999999764
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.0013 Score=62.24 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec---cCCCCCc
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS---PVTDFRE 72 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs---pVtdFre 72 (243)
+.+++++.+|++.|+ .|.+||+|.++.+...|++...|-.++|+.|.|.+- .|.-|.-
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccc
Confidence 468899999999999 899999999999999999999999999999999984 5555544
No 41
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00042 Score=65.96 Aligned_cols=59 Identities=25% Similarity=0.461 Sum_probs=50.7
Q ss_pred CCCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
.+.+++..++.+.|.+.|. .|. ||+|.++++|.+||+.|||..+.|++|.|..-.-...
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3566778889999999998 677 9999999999999999999999999999977544333
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.20 E-value=0.00047 Score=69.34 Aligned_cols=55 Identities=29% Similarity=0.269 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEec
Q 026083 11 GVDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFS 65 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa-GR~I~vEfs 65 (243)
.+.++...+++++|.+.|+ .|++||+|.+.++|++||+.||+..+. |+.|.+..+
T Consensus 62 FVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 62 FVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred EeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3455678899999999998 699999999999999999999999884 888766543
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.14 E-value=0.00046 Score=65.14 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+.+.....+..||++-|+ .+.+||.|.-.++|..|++.|+++.|.|++++|++|.
T Consensus 82 ~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 82 HVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred ccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 4555566678899999998 7999999999999999999999999999999999974
No 44
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.11 E-value=0.00087 Score=55.45 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
-++++.++.+++-+.|. .|.+||-|++..+|.+|++.|+|-.++++.|.|-|+.
T Consensus 24 rNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 24 RNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 45689999999999998 8999999999999999999999999999999999874
No 45
>PLN03213 repressor of silencing 3; Provisional
Probab=97.06 E-value=0.00086 Score=67.26 Aligned_cols=54 Identities=13% Similarity=0.339 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHhHcC---------------cccEEEEeCCH--HHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------VGNVYVQFREE--EQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------~GNVYVkF~~e--e~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
|.++.+.+++++|+..|. +||.||+|... .++.+||.+|||--+.|+.|.|+..
T Consensus 15 VGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 456789999999999997 89999999987 7899999999999999999999875
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.0013 Score=66.41 Aligned_cols=61 Identities=25% Similarity=0.496 Sum_probs=53.9
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCCCCc
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDFRE 72 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtdFre 72 (243)
+-++++.+.+.+|+-+|. -||.||+|....+|.+|++.|||-.|+||+|-|.+. +-..|..
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 456678888889999998 799999999999999999999999999999999995 6566654
No 47
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.90 E-value=0.00074 Score=40.38 Aligned_cols=26 Identities=23% Similarity=0.732 Sum_probs=23.0
Q ss_pred CCcccccccccCCCCCCCCCccCccc
Q 026083 70 FREATCRQYEENTCNRGGYCNFMHLK 95 (243)
Q Consensus 70 FreA~Crq~~~g~C~RGg~CNFmHv~ 95 (243)
++..+|..|..|.|.+|..|.|+|..
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 56678999999999999999999963
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0011 Score=56.56 Aligned_cols=63 Identities=32% Similarity=0.496 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
+.++.+-+++++|-|.|. -|+.||+|-..++|+.|++-|||.-.+-++|.+++.+ -|.|
T Consensus 41 VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~--GF~e 118 (153)
T KOG0121|consen 41 VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA--GFVE 118 (153)
T ss_pred EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc--cchh
Confidence 455677889999999997 7999999999999999999999999999999999854 4544
Q ss_pred cccccc
Q 026083 73 ATCRQY 78 (243)
Q Consensus 73 A~Crq~ 78 (243)
-+||
T Consensus 119 --GRQy 122 (153)
T KOG0121|consen 119 --GRQY 122 (153)
T ss_pred --hhhh
Confidence 4555
No 49
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.58 E-value=0.002 Score=55.56 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=47.9
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
-..+++++|++.|. .|.+.|+|.+.++|++||.+|||--+-|..|.|.++.|.
T Consensus 81 HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 81 HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 45678999999996 788999999999999999999999999999999986554
No 50
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.52 E-value=0.0022 Score=61.88 Aligned_cols=71 Identities=25% Similarity=0.595 Sum_probs=55.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcccccccccC-CCCCCCCCccCccccCCHHH--HHHHhhcc
Q 026083 33 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN-TCNRGGYCNFMHLKRISRDL--RRQLFGRY 109 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~Crq~~~g-~C~RGg~CNFmHv~~~sr~l--~~~Lf~~~ 109 (243)
|||.|...|+|..||.+.+|-+.+||.|.|.|-. |.| |..|..+ .|+ .+.|=|||--.+-.+. +++|...+
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lkatYGT-TKY----CtsYLRn~~Cp-Np~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT-TKY----CTSYLRNAVCP-NPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEeeecCc-hHH----HHHHHcCCCCC-CCCeeeecCCCcccccccHHHHhhhh
Confidence 6999999999999999999999999999998843 444 8888666 466 4679999976655443 45555544
No 51
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.49 E-value=0.00065 Score=42.11 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=19.4
Q ss_pred CCccccccccc-CCCCCCCCCccCccc
Q 026083 70 FREATCRQYEE-NTCNRGGYCNFMHLK 95 (243)
Q Consensus 70 FreA~Crq~~~-g~C~RGg~CNFmHv~ 95 (243)
|+..+|..|.. |.|+.|..|+|+|..
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 46788998866 999999999999963
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.49 E-value=0.0021 Score=57.80 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
+.+++..+-+++|++.|- ..++||+|++..+|++||..-+|--|+|=.|.|||..-..
T Consensus 11 vGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 11 VGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 345567788899999996 6799999999999999999999999999999999975443
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.34 E-value=0.005 Score=60.84 Aligned_cols=58 Identities=26% Similarity=0.436 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCCC
Q 026083 13 DAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDF 70 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtdF 70 (243)
-++...++++.|.+.|. .-..||.|.+-++|.+||+.|||.-.+|-+|.|.|. |+..-
T Consensus 265 RNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 265 RNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 34456789999999997 567899999999999999999999999999999997 66544
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.32 E-value=0.0063 Score=60.18 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCcee-CCeeeEEEeccCCCCCccc
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFY-AGRPIIVDFSPVTDFREAT 74 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~F-aGR~I~vEfspVtdFreA~ 74 (243)
..-++.+++|.-.|| +|.+||.|.+.++|+.||+.||+--| .|+.|.|.+| .|.
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S------van 164 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS------VAN 164 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe------eec
Confidence 346678899988888 89999999999999999999999866 6999999875 577
Q ss_pred ccccc
Q 026083 75 CRQYE 79 (243)
Q Consensus 75 Crq~~ 79 (243)
||+|.
T Consensus 165 ~RLFi 169 (506)
T KOG0117|consen 165 CRLFI 169 (506)
T ss_pred ceeEe
Confidence 88874
No 55
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.0023 Score=64.14 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 026083 15 QGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 62 (243)
Q Consensus 15 ~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~v 62 (243)
++..++.++|.+.|+ .|.|||+|-|+.+|+.|+++||++-++|+.|.+
T Consensus 83 l~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 83 LPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 466789999999998 899999999999999999999999999999984
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=96.17 E-value=0.0058 Score=58.56 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=44.7
Q ss_pred CCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 16 GNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 16 ~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+..-+-+|...|+ +||.||.|++.++|++|-.+|+|....||.|.|...
T Consensus 105 PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 105 PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 45566677888887 899999999999999999999999999999999774
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0058 Score=59.36 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=64.4
Q ss_pred CCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCC--CCcc-
Q 026083 17 NPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTD--FREA- 73 (243)
Q Consensus 17 ~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtd--FreA- 73 (243)
..++.++|.-+|. .-.+||+|.+.+++++|+=.|..-..+.|.|+|.|| .|.. |+..
T Consensus 249 PVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~ 328 (479)
T KOG0415|consen 249 PVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKG 328 (479)
T ss_pred CcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccccc
Confidence 3456778888887 345799999999999999999999999999999998 5554 4331
Q ss_pred --cccccccCCCCCCCCCccCccccCCHH
Q 026083 74 --TCRQYEENTCNRGGYCNFMHLKRISRD 100 (243)
Q Consensus 74 --~Crq~~~g~C~RGg~CNFmHv~~~sr~ 100 (243)
.-..+..-.|..+.--+|+|-.++.+.
T Consensus 329 ~~~~~d~~~~d~~~~~~~k~~~kd~~~~~ 357 (479)
T KOG0415|consen 329 SQKETDHRAKDCVGGPSSKFIHKDQNRPR 357 (479)
T ss_pred cccccchhhhccccCCcccchhccCCCCC
Confidence 111223346999999999998877643
No 58
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=96.05 E-value=0.0088 Score=53.92 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=37.7
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
.|.+||+|++++.|.-|.+.||+-.|-|+.|.|-|.|..
T Consensus 92 KgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 92 KGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred CceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 899999999999999999999999999999999999876
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=95.93 E-value=0.012 Score=58.99 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++-+.++++.|...|| .|+.||+|.+.++|.+|+..|||=-.|||+|.|...
T Consensus 284 gnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 284 GNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34567889999999999 899999999999999999999998899999997664
No 60
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=95.78 E-value=0.017 Score=54.38 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
-+++.+++++|+..|. .|..||-|.++++|++||..|||--.--+.|.|.|.
T Consensus 48 YLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 48 YLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3568899999999997 788999999999999999999999999999999996
No 61
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0098 Score=54.86 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=38.9
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
+|+.||+|...|+|..||+.||+--+-||.|.|.|.......+
T Consensus 52 RgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 52 RGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred cceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 8999999999999999999999999999999999985455444
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=95.50 E-value=0.021 Score=51.07 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=51.3
Q ss_pred CCCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
+.+++..++++.|-+.|. .|+.||-|.+.+.|.+|+.+|||.+.+.++|.+++.--.+-.
T Consensus 101 vgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 101 VGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 445667888898988886 789999999999999999999999999999999996544433
No 63
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.26 E-value=0.016 Score=52.25 Aligned_cols=50 Identities=34% Similarity=0.413 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++.++.++|+.||+ .|+.||.|.+.+.++.|++ |||--+-|++|.+++.
T Consensus 109 vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 109 VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 466777888999998 7899999999999999998 9999999999999874
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.18 E-value=0.026 Score=51.21 Aligned_cols=55 Identities=24% Similarity=0.565 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHh----HcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQE----HFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqe----hFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+..++|.. .|+ .|-+||-|.+++.|..|+.+|+|--|=|+++.+.|+.
T Consensus 14 InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 14 INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 444556666677665 665 8999999999999999999999999999999999964
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.06 E-value=0.019 Score=54.86 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 15 QGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+..++.+.|++.|. .|+.||.|...++|.+|+..+||+...|++|.+.+..
T Consensus 278 ld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 278 LDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred CccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 456788899999887 8999999999999999999999999999999887754
No 66
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=94.95 E-value=0.058 Score=50.93 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=45.5
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
..++++.-|.+.|. .|+.||...+-++|..||..|||--.++|.|+|.|-
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 45667777899998 899999999999999999999999999999999984
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=94.82 E-value=0.019 Score=51.30 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++..|.|.|- +|+.||+|.++|+|+=|++.||+--.=||||.+.-+.
T Consensus 15 gnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 15 GNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred ecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34566677888888875 8999999999999999999999999999999987754
No 68
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=94.74 E-value=0.03 Score=55.48 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCcee---CCeeeEEEecc
Q 026083 15 QGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~F---aGR~I~vEfsp 66 (243)
+...+++.+|++.|. +|++||+|.+.+.|..||++|||-+= .--||+|-|..
T Consensus 132 lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 132 LSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred ccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 345678899999997 89999999999999999999999864 34678887753
No 69
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=94.70 E-value=0.032 Score=56.63 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 9 TPGVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 9 ~~~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
|-.+-.+++.++.++|.+.|. .|+.||.|.=+|+++.|+..+++--|.|+.|.+++.
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 334555678899999999998 899999999999999999999999999999999986
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=94.67 E-value=0.027 Score=55.13 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=45.3
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
.+.+.++.|+..|. .||+||+|+=+|.|+-|++.|||-..+||-|.|-.
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 56778889999998 89999999999999999999999999999999874
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.59 E-value=0.027 Score=50.79 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
..+..+.+++|.+.|- .|++||.|.++.+|.+||-.|||.-|.|..|.+|+.-
T Consensus 8 ~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 8 RLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 3456677888888886 7999999999999999999999999999998888743
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.37 E-value=0.039 Score=49.80 Aligned_cols=51 Identities=33% Similarity=0.525 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 62 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~v 62 (243)
++++...+...+|.+||. .+..+|+|.++++|..||..|+|--+.|+.|.+
T Consensus 104 ~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 104 VRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 344455566688999998 588899999999999999999999999999999
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=93.69 E-value=0.062 Score=49.46 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+..+.-.+..+.|.++|| +|..||.|.|.++|.+|++..| =-.+||...|.|.-+
T Consensus 16 fVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 16 FVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3455677889999999999 8999999999999999998765 456777777777544
No 74
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=93.59 E-value=0.11 Score=41.41 Aligned_cols=38 Identities=37% Similarity=0.498 Sum_probs=29.9
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.|-+.|+|.+.+.|..|.+-|+|..-=|..|.|.|+|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 67789999999999999999999999999999999975
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=92.97 E-value=0.12 Score=51.55 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=35.3
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.|+.-|+|+++|.+++|++.||---..||+|+|.=.|-
T Consensus 86 rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 86 RGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred CCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 89999999999999999999999999999999976543
No 76
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=92.67 E-value=0.14 Score=50.86 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCce-eCCe--eeEEEe
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRF-YAGR--PIIVDF 64 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~-FaGR--~I~vEf 64 (243)
....-..++++|.+.|| .|+.||+|.+.++|.+|+.+|+..+ |-|- ||++-|
T Consensus 40 gqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 40 GQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred ccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 33456679999999999 8999999999999999999997654 4443 444433
No 77
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=92.42 E-value=0.17 Score=40.32 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=30.3
Q ss_pred CCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCc-----eeCCeeeEEEe
Q 026083 16 GNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGR-----FYAGRPIIVDF 64 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR-----~FaGR~I~vEf 64 (243)
+.+++.++|.+.|. .-..||.|.+++.|+.|+.+|.-. .+++..|.+++
T Consensus 10 ~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 10 GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 45678999999998 445799999999999999998765 44444444443
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.03 E-value=0.018 Score=51.74 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+..+++.+++.+|--.|. .||+|+.|++..+..-||..|||--..||.|.|..+
T Consensus 40 iggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 40 IGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 445678889999888886 899999999999999999999999999999999874
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=91.82 E-value=0.25 Score=49.52 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHhHcC------------cccE--EEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE------------VGNV--YVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------~GNV--YVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+.++++..|=.-|++.|- .|+- -|+|.++++|+.|+..|||--.+||.|.|.|
T Consensus 541 irNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 541 IRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred EecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 445677788888888885 2222 5999999999999999999999999999976
No 80
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.80 E-value=0.12 Score=53.44 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
+-+.++.++.++|++.|. .|+.||.|-+.++|..|+++|-+.-|=||.|..|+.....
T Consensus 618 VRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 618 VRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 445578889999999997 8999999999999999999999999999999999976544
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=91.69 E-value=0.36 Score=46.07 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=49.1
Q ss_pred CCCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+.+++.++++.+|...|| +-..||..+++..|+.||..|+|--+.|.-|.||-|.-
T Consensus 6 FIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 6 FIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred hccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 3556677889999999999 44458899999999999999999999999999998753
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.87 E-value=0.22 Score=46.68 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=41.8
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
+.+++.+-|...|. .|.-||-|.+..++..|++.|||+|-+-|+|.+-
T Consensus 199 gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 199 GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45567777777775 8999999999999999999999999999999764
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=90.77 E-value=0.54 Score=43.14 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
.+-+++..+..++|+|.|+ .|..=|-|..-++|..||+.|||--.+|++|..+++--...
T Consensus 87 ~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 87 NVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred eeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 3455677888899999887 68889999999999999999999999999999998644443
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=88.53 E-value=1.3 Score=41.34 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeC---CeeeEEEeccC
Q 026083 15 QGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFSPV 67 (243)
Q Consensus 15 ~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa---GR~I~vEfspV 67 (243)
+..++-+.+|-.-|- .-+.||.|.+-.+|.+|+++|||--|+ +..|+.||..-
T Consensus 42 LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKS 117 (284)
T KOG1457|consen 42 LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKS 117 (284)
T ss_pred CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhc
Confidence 345566777777764 246899999999999999999999998 78899999653
No 85
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=88.49 E-value=0.5 Score=44.96 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCc
Q 026083 17 NPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGR 53 (243)
Q Consensus 17 ~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR 53 (243)
..-+++++...|. +|+.||||.+--+|+.||.+|+|-
T Consensus 29 kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 29 KQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred ccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 3447788888886 899999999999999999999984
No 86
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.20 E-value=0.87 Score=44.25 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHH-HhCCceeCCeeeEEEeccCCCCCccc
Q 026083 15 QGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALK-SLSGRFYAGRPIIVDFSPVTDFREAT 74 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~-aLNGR~FaGR~I~vEfspVtdFreA~ 74 (243)
+...+++.+|.+||. .|.+||.|.+-++|+.|.. .+|--..+|+.|.+...+- |+.|.
T Consensus 236 l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~--~~~a~ 307 (377)
T KOG0153|consen 236 LNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP--KQAAQ 307 (377)
T ss_pred cccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC--ccccc
Confidence 345778999999997 8999999999999996654 5666667999999996544 54443
No 87
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=87.44 E-value=1.1 Score=47.36 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 15 QGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
.+..+.+.+|...|| .|++||+-..-.+|.+|+++|+.--++++.|++-+
T Consensus 429 i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 429 IPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred ccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 456678899999998 89999999999999999999999999999996654
No 88
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.94 E-value=0.64 Score=43.13 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
+..+.+.++.++|.+||. .|+.||.|.....+..|+.. +.+..+|++|.+++.......
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred ecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 344567889999998887 89999999999999999999 999999999999997655554
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=85.76 E-value=0.94 Score=45.57 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=32.0
Q ss_pred CCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHH
Q 026083 14 AQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKS 49 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~a 49 (243)
.++..+|.++|++.|+ .|-+||+|.++|++++|++.
T Consensus 17 GLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 17 GLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred CCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHh
Confidence 3467789999999998 79999999999999999964
No 90
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.11 E-value=0.26 Score=47.10 Aligned_cols=58 Identities=28% Similarity=0.649 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCccccccccc-CCCCCCCCCccCcccc
Q 026083 33 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKR 96 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~Crq~~~-g~C~RGg~CNFmHv~~ 96 (243)
|||.|..+++|..||...+|-.++|+.|.|.|-. +.| |.-+.. -.|+... |=|||=.-
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt-tky----cs~~l~~~~c~~~~-cmylhe~~ 186 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGT-TKY----CSFYLRNDICQNPD-CMYLHEIG 186 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC-Ccc----hhHHhhhhcccCcc-cccccccc
Confidence 8999999999999999999999999999988732 344 444433 3577655 99999653
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=84.94 E-value=2.8 Score=33.48 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=25.5
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYA 56 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~Fa 56 (243)
.|.+||-|.+.+.|.+-.++++|+...
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 899999999999999999999998774
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.57 E-value=1.5 Score=44.11 Aligned_cols=74 Identities=28% Similarity=0.330 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCccc-
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREAT- 74 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~- 74 (243)
+++.+++++|.+.|. -|-+||+|++.+.|++|++. +-.-++=|=|.+--+.+..++.+.
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~ 189 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAG 189 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhcc
Confidence 578899999999998 68899999999999999965 455566666777666666665544
Q ss_pred --------ccccccCCCCCCCCC
Q 026083 75 --------CRQYEENTCNRGGYC 89 (243)
Q Consensus 75 --------Crq~~~g~C~RGg~C 89 (243)
-..|+.-+-+||++=
T Consensus 190 ~~~~~~~rpGpy~~~~a~Rg~~d 212 (510)
T KOG4211|consen 190 PGDGRVGRPGPYDRPGAPRGGYD 212 (510)
T ss_pred ccccccCCCCccccccCCccccc
Confidence 234444355565544
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=83.24 E-value=1.5 Score=43.67 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEEeccCC
Q 026083 15 QGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFSPVT 68 (243)
Q Consensus 15 ~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR-~I~vEfspVt 68 (243)
....+++++|+++|- .--.++++.++|+|..|+-.|..-+.++- .|.|.||..+
T Consensus 422 ip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 422 IPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 356789999999996 23367889999999999999999999987 8899998643
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=82.68 E-value=4.6 Score=40.35 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=49.7
Q ss_pred CCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcccccc
Q 026083 17 NPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQ 77 (243)
Q Consensus 17 ~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~Crq 77 (243)
..++++.|--.|. .-++.|++.+...|+-|+..|+|-..=|++|.+.||.-++-.--.=+|
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 4567888888887 567899999999999999999998888899999999777665444333
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=81.48 E-value=0.92 Score=43.24 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
..++...||-+.|- +=|.||.|+++.+|+.||.+|||=-++=+.|+|.|-
T Consensus 294 PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 294 PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 34556667777775 556799999999999999999999999999998884
No 96
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.23 E-value=2.5 Score=31.67 Aligned_cols=46 Identities=11% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCCCHHHHHhHcC----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 026083 17 NPLDPRKIQEHFE----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 62 (243)
Q Consensus 17 ~~~~~e~lqehFE----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~v 62 (243)
..++-.+|+..+- .==.||-|.+.++|++|..+.+|+.|-+-.|..
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3445566666554 223699999999999999999999887766554
No 97
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.78 E-value=2.9 Score=36.74 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=37.1
Q ss_pred HHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEeccCCCC
Q 026083 21 PRKIQEHFE-------------VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 21 ~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLN--GR~FaGR~I~vEfspVtdF 70 (243)
...|+++|. -+-|-|-|.+.++|..|...|. +..|.|..|.+-|...+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 456666665 6778999999999999999999 9999999999999855555
No 98
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=79.53 E-value=5.5 Score=41.43 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=4.5
Q ss_pred HHHHHHhhc
Q 026083 100 DLRRQLFGR 108 (243)
Q Consensus 100 ~l~~~Lf~~ 108 (243)
.++.+.+.+
T Consensus 586 ~~r~k~~aR 594 (757)
T KOG4368|consen 586 FFRAKMRAR 594 (757)
T ss_pred HHHHHHHHH
Confidence 345555554
No 99
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=79.07 E-value=3.5 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.6
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPII 61 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~ 61 (243)
...|.|+|.+..+|.+|| ..||.-|+|-.|.
T Consensus 54 ~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp TTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred CCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 345899999999999999 5599999997664
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=77.98 E-value=1.8 Score=40.30 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCce
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRF 54 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~ 54 (243)
+.+++..+++++|+..|. .-.+||.|.+.+.|..||..|.|-.
T Consensus 215 ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 215 IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 445677889999999997 3357999999999999999998754
No 101
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=77.93 E-value=1.5 Score=45.06 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=40.5
Q ss_pred CCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCc--eeCCeeeEEEeccCC
Q 026083 19 LDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPVT 68 (243)
Q Consensus 19 ~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR--~FaGR~I~vEfspVt 68 (243)
+-.|+++-.|+ .-+-||.|+++.||+.|++.|.-+ -|-|+||.|-+-++.
T Consensus 187 tp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImARIKain 252 (684)
T KOG2591|consen 187 TPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAIN 252 (684)
T ss_pred ChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhh
Confidence 33467788887 678899999999999999999765 699999998665443
No 102
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=76.86 E-value=2.7 Score=40.77 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=45.5
Q ss_pred CCCCCCCCCCHHHHHhHcC---------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 11 GVDAQGNPLDPRKIQEHFE---------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE---------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
++-.....++...|.++|. +|-.-|.|.+...|+.||..++++-|.|-+|.|-
T Consensus 70 ~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs 149 (351)
T KOG1995|consen 70 FVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVS 149 (351)
T ss_pred eeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhh
Confidence 3333345567788888886 7889999999999999999999999999988877
Q ss_pred ec
Q 026083 64 FS 65 (243)
Q Consensus 64 fs 65 (243)
+.
T Consensus 150 ~a 151 (351)
T KOG1995|consen 150 LA 151 (351)
T ss_pred hh
Confidence 64
No 103
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=75.98 E-value=1.1 Score=42.81 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.8
Q ss_pred CCCcccccccccCCCCCCCCCccCccc
Q 026083 69 DFREATCRQYEENTCNRGGYCNFMHLK 95 (243)
Q Consensus 69 dFreA~Crq~~~g~C~RGg~CNFmHv~ 95 (243)
.+..-+|+-|..|.|..|..|+|||..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 678899999999999999999999964
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=75.77 E-value=1.4 Score=40.85 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 14 AQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
+....++++-|.|.|- .-|+||.|.+|-...-|++.|||--.-+++|++.|-.-+
T Consensus 16 n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 16 NMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 3456788888999885 348999999999999999999999999999998875444
No 105
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=73.41 E-value=8 Score=33.29 Aligned_cols=41 Identities=29% Similarity=0.491 Sum_probs=31.8
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.+..+|.|.+-+.|.+|+ .|+|--+.|+.|.+.+-. .+|-.
T Consensus 70 ~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt-pdW~~ 110 (146)
T PF08952_consen 70 GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT-PDWLK 110 (146)
T ss_dssp TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--------
T ss_pred CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC-ccHHH
Confidence 677899999999999999 789999999999999943 36643
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=73.10 E-value=6.6 Score=38.39 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHhHcC--------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 11 GVDAQGNPLDPRKIQEHFE--------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE--------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
-+..++..+|-+++++.|. .|-.-+-|-.+++..-|++.|++--|.|..|.||-
T Consensus 138 YVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVer 217 (382)
T KOG1548|consen 138 YVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVER 217 (382)
T ss_pred EecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEeh
Confidence 3445677788999999887 78888999999999999999999999999999997
Q ss_pred ccC
Q 026083 65 SPV 67 (243)
Q Consensus 65 spV 67 (243)
...
T Consensus 218 Akf 220 (382)
T KOG1548|consen 218 AKF 220 (382)
T ss_pred hhh
Confidence 543
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=72.95 E-value=3.6 Score=37.62 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeC
Q 026083 15 QGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYA 56 (243)
Q Consensus 15 ~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa 56 (243)
....++.+.|+..|+ .|.+||+|.++..|..|.++|.|=-.-
T Consensus 154 iP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 154 IPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceec
Confidence 456778888899988 789999999999999999999875443
No 108
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=71.86 E-value=1.7 Score=45.39 Aligned_cols=9 Identities=89% Similarity=1.235 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 026083 115 RSRSRSRSP 123 (243)
Q Consensus 115 ~~~srs~s~ 123 (243)
++++||+||
T Consensus 748 r~rsRsrSp 756 (878)
T KOG1847|consen 748 RGRSRSRSP 756 (878)
T ss_pred ccccccCCc
Confidence 334444444
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=71.80 E-value=3.7 Score=28.89 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=21.5
Q ss_pred HHHHHhHcC-------------cccEEEEeCCHHHHHHHH
Q 026083 21 PRKIQEHFE-------------VGNVYVQFREEEQAARAL 47 (243)
Q Consensus 21 ~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai 47 (243)
.+.+-+||. .-.+||+|.+..+|++|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 355777887 335799999999999985
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=70.96 E-value=8 Score=41.09 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
.+..+.++-++|-+.|. .|-.-|-|++.++|..|+..|+++-+..|.|.+.+
T Consensus 873 ~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 873 NNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34467788899999996 78899999999999999999999999999998765
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=69.42 E-value=4.1 Score=42.11 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=27.1
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCe
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGR 58 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR 58 (243)
.|.+|++|.+..+|+.|++.|||.-++-.
T Consensus 105 kG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 105 KGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred eeEEEEEecChhhHHHHHHhcccceeccc
Confidence 89999999999999999999999888754
No 112
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=68.87 E-value=9.2 Score=28.45 Aligned_cols=36 Identities=44% Similarity=0.614 Sum_probs=27.6
Q ss_pred CCCCCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHh
Q 026083 11 GVDAQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSL 50 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aL 50 (243)
|+|. ++.++|+..|. .-.+=|-|.+++.|.+|+.+|
T Consensus 12 Gvd~----lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 12 GVDE----LSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred cCCC----CCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 5555 67788877665 345667799999999999886
No 113
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=67.36 E-value=5.5 Score=39.69 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHhHcC----------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE----------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE----------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+....++.++||-.|. .-.+||+|.++..+..|. .|....|=++.|+|-.+
T Consensus 13 anispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 13 ANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred cccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 34456678999999997 345799999999888776 66667777777777554
No 114
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=65.59 E-value=8.3 Score=38.08 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCCCCCCCCHHHHHhHcC-------------c------ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------V------GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~------GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+.++...+++.+|++.|. . .+.||+|.+.++++.||.+- --..+|+.|.||-
T Consensus 293 V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 293 VKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred eecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 455678899999999997 1 45599999999999999885 7788899998886
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=63.64 E-value=5.5 Score=37.79 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.....++++++.+.|+ .|+.||.|.+++.+.+++ ...-.-|+|++|.|--.
T Consensus 104 G~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 104 GLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRA 173 (311)
T ss_pred CcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeec
Confidence 3467789999999999 899999999999888877 56888899999988764
No 116
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=61.41 E-value=2.5 Score=40.66 Aligned_cols=27 Identities=41% Similarity=0.923 Sum_probs=23.1
Q ss_pred CCC-CcccccccccCCCCCCCC-CccCcc
Q 026083 68 TDF-REATCRQYEENTCNRGGY-CNFMHL 94 (243)
Q Consensus 68 tdF-reA~Crq~~~g~C~RGg~-CNFmHv 94 (243)
+.| ..++||.|..++|.||.. |-|-|.
T Consensus 32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 32 TKWLTLEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred cchhHHHHHHHHHhccccCCCccccccCC
Confidence 445 458999999999999987 999987
No 117
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=60.53 E-value=11 Score=39.55 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 18 PLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 18 ~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
-+-.-+|...|. .=..||...+.++|.+||..|+-.-+-||+|.||-.
T Consensus 416 tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 416 TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 344567888887 233599999999999999999999999999999985
No 118
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=59.98 E-value=5.8 Score=29.25 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=18.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 33 VYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
-||.-. ++.|..++.+|++..+.|++|.+|.
T Consensus 43 S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 43 SFVEVP-EEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEEE--TT-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 355543 4479999999999999999999986
No 119
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=59.70 E-value=11 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.7
Q ss_pred cEEEEeCCHHHHHHHHHHhCCceeCC
Q 026083 32 NVYVQFREEEQAARALKSLSGRFYAG 57 (243)
Q Consensus 32 NVYVkF~~ee~A~~Ai~aLNGR~FaG 57 (243)
-|-|||.+.++|..=...+||+-|+-
T Consensus 56 mVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 56 MVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCC
Confidence 47789999999999999999999973
No 120
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=59.11 E-value=4.6 Score=38.30 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDF 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtdF 70 (243)
+..+...++++.|+++|. .|+.||.|.+++....+|.+ ----++|+.|.+.-. |..+.
T Consensus 11 iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 11 IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCcccc
Confidence 344567789999999998 79999999998877777754 334578888876653 44433
No 121
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=56.16 E-value=7.3 Score=35.62 Aligned_cols=38 Identities=18% Similarity=0.559 Sum_probs=30.8
Q ss_pred EEeccCCCCCccccccccc-CCCCCCCCCccCccccCCH
Q 026083 62 VDFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKRISR 99 (243)
Q Consensus 62 vEfspVtdFreA~Crq~~~-g~C~RGg~CNFmHv~~~sr 99 (243)
+....-..|++-.|.-|.. |.|+.|..|-|+|...-..
T Consensus 167 ~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 167 NQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred hhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 4445557899999999966 9999999999999976333
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=56.00 E-value=22 Score=37.16 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCc-ee--CCeeeEEEeccCCCCCcc
Q 026083 11 GVDAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGR-FY--AGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR-~F--aGR~I~vEfspVtdFreA 73 (243)
-++++.-+++..+|++.+. .-..||.|.++++|..-+.||+|- |= +++-|.|+|.--++..-+
T Consensus 448 hI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld~h 527 (718)
T KOG2416|consen 448 HIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELDKH 527 (718)
T ss_pred eeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHHHH
Confidence 3466677888889888776 566799999999999999999995 43 578899999877766544
Q ss_pred cccc
Q 026083 74 TCRQ 77 (243)
Q Consensus 74 ~Crq 77 (243)
+-.+
T Consensus 528 r~~l 531 (718)
T KOG2416|consen 528 RNGL 531 (718)
T ss_pred hccc
Confidence 4333
No 123
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=55.99 E-value=4.3 Score=39.01 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=32.5
Q ss_pred CCCCcccccccccCCCCCCCCCccCccccCCHHH-HHHHhhc
Q 026083 68 TDFREATCRQYEENTCNRGGYCNFMHLKRISRDL-RRQLFGR 108 (243)
Q Consensus 68 tdFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l-~~~Lf~~ 108 (243)
.|-..-+|-.|-.|+|..|..|+|.|=+-+-+.. ++.||..
T Consensus 88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d 129 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPD 129 (343)
T ss_pred CCchHHHHHHHhccCCCCCCcccccchHHHhhhccchhcccc
Confidence 6778899999999999999999999977655543 4455553
No 124
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=55.66 E-value=9 Score=22.06 Aligned_cols=18 Identities=39% Similarity=1.097 Sum_probs=13.6
Q ss_pred ccccccCCCCCCCCCccCcc
Q 026083 75 CRQYEENTCNRGGYCNFMHL 94 (243)
Q Consensus 75 Crq~~~g~C~RGg~CNFmHv 94 (243)
|+ |..+ |..+..|-|.|.
T Consensus 2 Ck-~~~~-C~~~~~C~f~HP 19 (19)
T PF14608_consen 2 CK-FGPN-CTNGDNCPFSHP 19 (19)
T ss_pred Cc-CcCC-CCCCCcCccCCc
Confidence 66 3333 999999999994
No 125
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=53.19 E-value=4.1 Score=38.24 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=34.2
Q ss_pred CCCCcccccccccCCCCCCCCCccCccccCCHHHHH-HHhhcc
Q 026083 68 TDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-QLFGRY 109 (243)
Q Consensus 68 tdFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~-~Lf~~~ 109 (243)
.+-...+|-.|-.+.|..|..|+|.|-+..-+.+.+ +||...
T Consensus 81 vdpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDv 123 (299)
T COG5252 81 VDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDV 123 (299)
T ss_pred cCchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhh
Confidence 355678999999999999999999999887777644 577653
No 126
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=53.08 E-value=7 Score=35.96 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=28.3
Q ss_pred EEeccCCCCCccccccc-ccCCCCCCCCCccCccc
Q 026083 62 VDFSPVTDFREATCRQY-EENTCNRGGYCNFMHLK 95 (243)
Q Consensus 62 vEfspVtdFreA~Crq~-~~g~C~RGg~CNFmHv~ 95 (243)
+..--|-||...+|..| +.|-|.-|..|-|+|-.
T Consensus 131 ~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 131 FRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred eeccceeecCcccccchhhcccccCCchhhhhhhh
Confidence 33345678889999999 77899999999999964
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=42.81 E-value=32 Score=34.91 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCce-eCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRF-YAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~-FaGR~I~vEfsp 66 (243)
.++.++..+++.+|...|. .|..||-+.++.-|.+|++.|+|.- .-|+++.++.+-
T Consensus 5 yignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 5 YIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred cccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4667778889999999997 7889999999999999999999975 669999998863
No 128
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=39.92 E-value=18 Score=34.23 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCcccccccccCCCCCCCCCccCccccCCH
Q 026083 69 DFREATCRQYEENTCNRGGYCNFMHLKRISR 99 (243)
Q Consensus 69 dFreA~Crq~~~g~C~RGg~CNFmHv~~~sr 99 (243)
..+.-.|+-+..|.|+.+..|.|||=..+..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCccc
Confidence 5667788888888888888888888776655
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.09 E-value=49 Score=32.18 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=31.2
Q ss_pred ccc-EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 30 VGN-VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 30 ~GN-VYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
.|| +||+|...-+|.+||.. ||+.|+|-.+ +-+.|.+|-
T Consensus 231 ngNwMhirYssr~~A~KALsk-ng~ii~g~vm-iGVkpCtDk 270 (350)
T KOG4285|consen 231 NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM-IGVKPCTDK 270 (350)
T ss_pred CCceEEEEecchhHHHHhhhh-cCeeeccceE-EeeeecCCH
Confidence 343 69999999999999954 9999999766 556676665
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=38.98 E-value=45 Score=33.51 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHhHcC----------------------cccEEEEeCCHHHHHHHHHH
Q 026083 14 AQGNPLDPRKIQEHFE----------------------VGNVYVQFREEEQAARALKS 49 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE----------------------~GNVYVkF~~ee~A~~Ai~a 49 (243)
.+.+.+++.++-+.|. .|-+||.|..+++|+.|+..
T Consensus 168 GLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 168 GLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 3568889999999994 68899999999999999854
No 131
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=38.60 E-value=25 Score=35.65 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=34.5
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.|+.|.+|.+.-.+..|+..|||--..+++|+|...
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 899999999999999999999999999999999875
No 132
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=36.18 E-value=26 Score=33.96 Aligned_cols=34 Identities=26% Similarity=0.612 Sum_probs=24.6
Q ss_pred CCCcccccccccCCCCCCCCCccCccccCCHHHHHHHh
Q 026083 69 DFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 106 (243)
Q Consensus 69 dFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~~Lf 106 (243)
+-+---|-.+..+.|.|-. |-|+| +++.|+..|.
T Consensus 68 ~g~v~aC~Ds~kgrCsR~n-CkylH---pp~hlkdql~ 101 (331)
T KOG2494|consen 68 NGRVIACFDSQKGRCSREN-CKYLH---PPQHLKDQLK 101 (331)
T ss_pred CCeEEEEeccccCccCccc-ceecC---CChhhhhhhh
Confidence 3333448899999999977 99999 5556655553
No 133
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=13 Score=35.61 Aligned_cols=29 Identities=31% Similarity=0.849 Sum_probs=25.4
Q ss_pred CCCCCccccccc-ccCCCCCCCCCccCccc
Q 026083 67 VTDFREATCRQY-EENTCNRGGYCNFMHLK 95 (243)
Q Consensus 67 VtdFreA~Crq~-~~g~C~RGg~CNFmHv~ 95 (243)
+-+|..-+|..| ++|-|..|..|-|+|-+
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhh
Confidence 457888999999 67899999999999964
No 134
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=34.49 E-value=20 Score=35.29 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=4.0
Q ss_pred HHHHHhHcC
Q 026083 21 PRKIQEHFE 29 (243)
Q Consensus 21 ~e~lqehFE 29 (243)
+.+|..+||
T Consensus 171 p~dLw~WyE 179 (453)
T KOG2888|consen 171 PADLWDWYE 179 (453)
T ss_pred hhHHHHHhh
Confidence 344444444
No 135
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=34.47 E-value=19 Score=34.57 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=29.2
Q ss_pred eEEEeccCCCCCcc-ccccc-ccCCCCCCCCCccCccccCCHHH
Q 026083 60 IIVDFSPVTDFREA-TCRQY-EENTCNRGGYCNFMHLKRISRDL 101 (243)
Q Consensus 60 I~vEfspVtdFreA-~Crq~-~~g~C~RGg~CNFmHv~~~sr~l 101 (243)
-+|+|+..-+...+ .|.-| ..|.|..+..|.|+|+-.-+...
T Consensus 92 D~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k 135 (325)
T KOG1040|consen 92 DQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIK 135 (325)
T ss_pred CcCcchhhhhhcccccccccccccccccccCCcccCCChhhhhh
Confidence 45777765444443 46655 66899999999999998644333
No 136
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=34.13 E-value=25 Score=36.80 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=43.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCccccccCCCCccccCC
Q 026083 179 VREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGNGYHSYKQ 234 (243)
Q Consensus 179 ~Re~S~ERRa~ie~Wnrere~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (243)
.|+.++||-++-..| +|+..++..-+-++.+-+++|++.|-++-+.+.+..+|.+
T Consensus 563 srkr~ee~e~r~r~w-~e~~g~~~~s~trn~gp~~~~~ssn~sd~~t~r~~fky~r 617 (673)
T KOG2296|consen 563 SRKRGEEREARTRKW-AEQQGKHSPSETRNSGPSNGQGSSNPSDASTGRNMFKYIR 617 (673)
T ss_pred HHhhhhhHHHHHHHH-HHHhcCCCcccccCCCCCCCCCCCCccccccccchHHHHH
Confidence 367788888888899 7777777656677888889999999988777888887765
No 137
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=33.54 E-value=36 Score=35.68 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026083 190 IEQWNRE 196 (243)
Q Consensus 190 ie~Wnre 196 (243)
|+-=|++
T Consensus 684 lse~NKG 690 (757)
T KOG4368|consen 684 LGEENKG 690 (757)
T ss_pred cccccch
Confidence 4433443
No 138
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=31.52 E-value=47 Score=29.49 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCCCCHHHHHhHcC----------ccc----EE---EEeCCHH---HHHHHHHHhCCceeCCeeeEEEeccCCCCCcccc
Q 026083 16 GNPLDPRKIQEHFE----------VGN----VY---VQFREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREATC 75 (243)
Q Consensus 16 ~~~~~~e~lqehFE----------~GN----VY---VkF~~ee---~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~C 75 (243)
+..++-++|-++|= .|+ =| |-+.+++ .|++++..|...-.-+++|.+|+.|...|-.|-=
T Consensus 68 p~~iSy~~LL~~Ff~~hDPt~~~~Qg~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEe 147 (186)
T PRK13014 68 PKQVSYENLLQIFFSTHDPTQLNRQGPDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAED 147 (186)
T ss_pred CCcCCHHHHHHHHHHhcCCCccCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHH
Confidence 35567788877663 222 12 3344544 4555677775432227899999999999966532
Q ss_pred c-ccccCCCCCCCCCccCccccCC
Q 026083 76 R-QYEENTCNRGGYCNFMHLKRIS 98 (243)
Q Consensus 76 r-q~~~g~C~RGg~CNFmHv~~~s 98 (243)
- |.-..+-+.++||-+.+..+..
T Consensus 148 yHQ~Yl~k~p~~~yc~~~~~~~~~ 171 (186)
T PRK13014 148 YHQDYLKKNPTHPYIVYNDLPKGS 171 (186)
T ss_pred HHHHHHHhCCCCCccEEEeChhhh
Confidence 1 1111345778999877665443
No 139
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=30.74 E-value=56 Score=34.79 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=9.8
Q ss_pred CCCCCCCCCccCccccCCHHHHH
Q 026083 81 NTCNRGGYCNFMHLKRISRDLRR 103 (243)
Q Consensus 81 g~C~RGg~CNFmHv~~~sr~l~~ 103 (243)
..|..+-.--=+-+..+.+-+-+
T Consensus 689 ~pcsg~R~l~~~~~~~~dr~ssk 711 (878)
T KOG1847|consen 689 HPCSGKRHLHKTRYSSKDRHSSK 711 (878)
T ss_pred CCCCCCCcCcccccCCCCccccc
Confidence 34655544333333344444433
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=29.73 E-value=43 Score=35.90 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=15.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCC
Q 026083 33 VYVQFREEEQAARALKSLSGRFYAG 57 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR~FaG 57 (243)
.+|+|.++..+..--..+.|--|.|
T Consensus 695 ~~~k~~de~~~~~~~~~ss~~~~~d 719 (877)
T KOG0151|consen 695 NPVKYDDEDRDKLRDIESSGSDNQD 719 (877)
T ss_pred cccccchhhhHHHhhhhhhcccccc
Confidence 5778877776665444455555544
No 141
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=29.50 E-value=52 Score=28.76 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=36.9
Q ss_pred CCCCCHHHHHhHcC--------------cccEE---EEeCCHH---HHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 16 GNPLDPRKIQEHFE--------------VGNVY---VQFREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 16 ~~~~~~e~lqehFE--------------~GNVY---VkF~~ee---~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
+..++-++|-++|= +|.=| |-|.+++ .|++++..|...-.-+++|.+++.|.+.|-.|
T Consensus 63 p~~isy~~Ll~~f~~~hDPt~~~~Qg~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~~Fy~A 140 (172)
T PRK14054 63 PAVISYRELLELFFQIHDPTTLNRQGNDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVEPAETFYEA 140 (172)
T ss_pred CCcCCHHHHHHHHHHhCCCCccCCCCCCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEecCCCceEC
Confidence 35567778777663 23322 4455554 45566666765522268999999999999665
No 142
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.32 E-value=93 Score=22.67 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=33.6
Q ss_pred cEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCccccccc
Q 026083 32 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQY 78 (243)
Q Consensus 32 NVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~Crq~ 78 (243)
..+|.|.+..+|.+|-+.|...=+ .+.+.|+..--.+.|+.-
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi-----~~~liP~P~~i~~~CG~a 44 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI-----PVRLIPTPREISAGCGLA 44 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-----cEEEeCCChhccCCCCEE
Confidence 578999999999999999987654 466668877777888763
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=28.83 E-value=20 Score=35.95 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 15 QGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 15 ~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
+.+.++.++|-..|. .|-+||+|.++|.|..|+..-...+--+|-|.+--+.+....++
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~v 367 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEV 367 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHH
Confidence 356667777776665 78899999999999999998888887777777766666666655
Q ss_pred ccc
Q 026083 74 TCR 76 (243)
Q Consensus 74 ~Cr 76 (243)
.-+
T Consensus 368 L~~ 370 (508)
T KOG1365|consen 368 LSG 370 (508)
T ss_pred Hhc
Confidence 443
No 144
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.77 E-value=58 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.4
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAG 57 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaG 57 (243)
.|.|||+=.++.+...|++.+.+=+..-
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 8999999999999999999988755443
No 145
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=26.46 E-value=1.4e+02 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.4
Q ss_pred HHHHhHcCcccEEEEeCCHHHHHHHHHHh
Q 026083 22 RKIQEHFEVGNVYVQFREEEQAARALKSL 50 (243)
Q Consensus 22 e~lqehFE~GNVYVkF~~ee~A~~Ai~aL 50 (243)
..+.+.|+.|.-+|.|.++++...++..|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~el~~~i~~l 59 (92)
T PF13524_consen 31 PGLREIFEDGEHIITYNDPEELAEKIEYL 59 (92)
T ss_pred HHHHHHcCCCCeEEEECCHHHHHHHHHHH
Confidence 67888899998999999999999988875
No 146
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=26.22 E-value=1.2e+02 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYA 56 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~Fa 56 (243)
.-.|||.|.-+--|-.+| .|-+|-+.
T Consensus 173 RT~v~vry~pe~iACaci-yLaAR~~e 198 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACI-YLAARNLE 198 (367)
T ss_pred ccceeeecCHHHHHHHHH-HHHHhhhc
Confidence 678999998888777666 55555554
No 147
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.18 E-value=31 Score=33.89 Aligned_cols=31 Identities=29% Similarity=0.624 Sum_probs=27.1
Q ss_pred CcccccccccCCCCCCCCCccCccccCCHHH
Q 026083 71 REATCRQYEENTCNRGGYCNFMHLKRISRDL 101 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg~CNFmHv~~~sr~l 101 (243)
+.-||.-+..|.|.||..|-|-|=+++.-.|
T Consensus 160 ~p~Icsf~v~geckRG~ec~yrhEkp~d~~L 190 (377)
T KOG0153|consen 160 RPHICSFFVKGECKRGAECPYRHEKPPDDPL 190 (377)
T ss_pred CCccccceeeccccccccccccccCCCCcch
Confidence 4578999999999999999999999976555
No 148
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=26.17 E-value=64 Score=27.51 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=35.4
Q ss_pred CCCCCHHHHHhHcC----------c----ccEE---EEeCCHHHH---HHHHHHhCCc-eeCCeeeEEEeccCCCCCcc
Q 026083 16 GNPLDPRKIQEHFE----------V----GNVY---VQFREEEQA---ARALKSLSGR-FYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 16 ~~~~~~e~lqehFE----------~----GNVY---VkF~~ee~A---~~Ai~aLNGR-~FaGR~I~vEfspVtdFreA 73 (243)
+..++-++|-++|= . |-=| |-+.++++. ++++..|... -| +++|.+++.|.+.|-.|
T Consensus 60 p~~is~~~Ll~~f~~~hdPt~~~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~-~~~i~tei~~~~~Fy~A 137 (149)
T TIGR00401 60 PKVISYEELLDVFWEIHDPTQGNRQGNDIGTQYRSGIYYHSDEQEKAARASKERLQAAANY-GDPIVTEIEPAENFYYA 137 (149)
T ss_pred CCcCcHHHHHHHHHHhCCCCcCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHhccc-CCCeEEEEecCCCeeec
Confidence 35567788877764 2 2222 445555544 4445555542 23 68999999999999655
No 149
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.15 E-value=78 Score=28.62 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 33 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+||.|+++.+|..|++.+.... +..+.++..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 5899999999999999765543 35556666654
No 150
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=26.08 E-value=51 Score=33.06 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCc-eeCC-eeeEEEeccCC
Q 026083 33 VYVQFREEEQAARALKSLSGR-FYAG-RPIIVDFSPVT 68 (243)
Q Consensus 33 VYVkF~~ee~A~~Ai~aLNGR-~FaG-R~I~vEfspVt 68 (243)
+-|+|++.+.|++|-.+|||- -|+| =.|.+||...+
T Consensus 162 AmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 162 AMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 579999999999999999994 2333 34555554433
No 151
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=87 Score=27.85 Aligned_cols=58 Identities=24% Similarity=0.450 Sum_probs=38.4
Q ss_pred CCCCCHHHHHhHcC--------------cccEE---EEeCCHH---HHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 16 GNPLDPRKIQEHFE--------------VGNVY---VQFREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 16 ~~~~~~e~lqehFE--------------~GNVY---VkF~~ee---~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
+..++-++|-++|= +|-=| |-+.+++ .|++.+.+|..--+-+++|..|+.|+..|-.|
T Consensus 66 p~~isy~~LL~~ff~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~A 143 (174)
T COG0225 66 PKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPA 143 (174)
T ss_pred CccccHHHHHHHHheecCCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCccc
Confidence 35567788877763 33322 3344444 56666777776556678999999999999654
No 152
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=24.84 E-value=32 Score=26.70 Aligned_cols=13 Identities=54% Similarity=1.150 Sum_probs=5.2
Q ss_pred CCCCCCCCccCcc
Q 026083 82 TCNRGGYCNFMHL 94 (243)
Q Consensus 82 ~C~RGg~CNFmHv 94 (243)
.|+||..|||.-+
T Consensus 58 dC~rG~~CN~flL 70 (73)
T PF06373_consen 58 DCPRGTSCNFFLL 70 (73)
T ss_dssp B--TT--B-TTT-
T ss_pred CCCCCCchhhhHh
Confidence 5999999996543
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=23.15 E-value=69 Score=32.24 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=5.1
Q ss_pred CCceeCCeee
Q 026083 51 SGRFYAGRPI 60 (243)
Q Consensus 51 NGR~FaGR~I 60 (243)
+|-.|+-.|+
T Consensus 113 dg~Lp~~~~l 122 (479)
T KOG4676|consen 113 DGVLPGDRPL 122 (479)
T ss_pred CCccCCCCcc
Confidence 4555555554
No 154
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=22.60 E-value=51 Score=33.36 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.9
Q ss_pred eCCHHHHHHHHHHhCCcee--CCeee---------EEEeccCCCCCc
Q 026083 37 FREEEQAARALKSLSGRFY--AGRPI---------IVDFSPVTDFRE 72 (243)
Q Consensus 37 F~~ee~A~~Ai~aLNGR~F--aGR~I---------~vEfspVtdFre 72 (243)
-.+++.|..|+..|+.||. +|-.| .||+||...|..
T Consensus 427 ~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~sY~g 473 (493)
T PLN02435 427 FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAG 473 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCceeeCC
Confidence 4889999999999999999 77666 589999988854
No 155
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.21 E-value=1.4e+02 Score=29.18 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCHHHHHhHcCcccEEEEeCCHHHHHHHHHHhCCc----eeCCeeeEE
Q 026083 19 LDPRKIQEHFEVGNVYVQFREEEQAARALKSLSGR----FYAGRPIIV 62 (243)
Q Consensus 19 ~~~e~lqehFE~GNVYVkF~~ee~A~~Ai~aLNGR----~FaGR~I~v 62 (243)
++.+++-+.|.-|.-||-.-.+++|++|++.|.++ |.-|+....
T Consensus 288 v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~g~~a~~iG~V~~~ 335 (345)
T COG0150 288 VEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQGETAYVIGRVEAG 335 (345)
T ss_pred CCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhcCCceEEEEEEEeC
Confidence 56677777787888888889999999999999987 787877653
No 156
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=21.44 E-value=2.1e+02 Score=28.92 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=51.6
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcccccccccCCCCCC----------------------C
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRG----------------------G 87 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~Crq~~~g~C~RG----------------------g 87 (243)
-|-.-|+..++.+.+.|+..||+-..=|..|.+-+|...-.....--.-+.|+|.-- -
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~ 404 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQP 404 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccC
Confidence 566789999999999999999999999999999887544333321112233444321 1
Q ss_pred CCccCccccCCHHHHHH
Q 026083 88 YCNFMHLKRISRDLRRQ 104 (243)
Q Consensus 88 ~CNFmHv~~~sr~l~~~ 104 (243)
--|.||.+-.|-.|-++
T Consensus 405 Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 405 PSNVLHFFNAPLGVTEE 421 (494)
T ss_pred CcceeEEecCCCccCHH
Confidence 35788988877776554
No 157
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=21.23 E-value=51 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.610 Sum_probs=28.6
Q ss_pred cCCCCCccccccc-ccCCCCC-CCCCccCccccCCH
Q 026083 66 PVTDFREATCRQY-EENTCNR-GGYCNFMHLKRISR 99 (243)
Q Consensus 66 pVtdFreA~Crq~-~~g~C~R-Gg~CNFmHv~~~sr 99 (243)
....|..+.|..+ ..+.|.. |..|.|-|.+.-.+
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 4567889999998 5689998 99999988877666
No 158
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.91 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.2
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEEec
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFS 65 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR-~I~vEfs 65 (243)
.+.|=|-|.+.+.|..|...|.++-|.|. .+.+-|.
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 78899999999999999999999999999 6666554
No 159
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.65 E-value=63 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.6
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCce
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRF 54 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~ 54 (243)
=+.||+-|.+.+.|+++++.|.-.|
T Consensus 59 G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 59 GPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC
Confidence 4679999999999999999886443
No 160
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=20.55 E-value=1.1e+02 Score=26.48 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCCCHHHHHhHcC--------------cccE---EEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 16 GNPLDPRKIQEHFE--------------VGNV---YVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 16 ~~~~~~e~lqehFE--------------~GNV---YVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
+..++-++|-++|= .|-= =|-|.++++.+.|.+.+... -..++|.+++.|.+.|-.|
T Consensus 56 p~~isy~~LL~~f~~~hdPt~~~~Qg~D~G~QYRS~If~~d~eQ~~~a~~~~~~~-~~~~~i~Tei~~~~~Fy~A 129 (156)
T PRK05528 56 PRMVSITDLMGYLFEIIDPYSVNKQGNDVGEKYRTGIYSEVDDHLIEARQFIERR-EDADKIAVEVLPLTNYVKS 129 (156)
T ss_pred CCcCCHHHHHHHHHHhCCcccccccCCCCCCCceEEEEeCCHHHHHHHHHHHHHH-hcCCCeEEEEecCCCeeec
Confidence 35567788877663 2222 25566776665555544322 2257899999999999554
No 161
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.49 E-value=93 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.6
Q ss_pred HHHHhHcC---------cccEEEEeCCHHHHHHHHHHhC
Q 026083 22 RKIQEHFE---------VGNVYVQFREEEQAARALKSLS 51 (243)
Q Consensus 22 e~lqehFE---------~GNVYVkF~~ee~A~~Ai~aLN 51 (243)
++|++.|. .=..|..|.+.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhhhhccCCCCHHHHHHHHHHhh
Confidence 68888887 3446999999999999988764
No 162
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=20.28 E-value=67 Score=24.40 Aligned_cols=15 Identities=47% Similarity=0.658 Sum_probs=13.3
Q ss_pred cccEEEEeCCHHHHH
Q 026083 30 VGNVYVQFREEEQAA 44 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~ 44 (243)
.|+|||.|..++-|+
T Consensus 46 ~G~vYi~~s~eel~~ 60 (76)
T PF06970_consen 46 NGNVYIIFSIEELME 60 (76)
T ss_pred CCCEEEEeeHHHHHH
Confidence 899999999988665
Done!