Query 026083
Match_columns 243
No_of_seqs 218 out of 512
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.5 5.1E-15 1.8E-19 113.5 0.8 66 1-66 9-104 (104)
2 3s6e_A RNA-binding protein 39; 99.3 2.9E-12 1E-16 100.8 4.5 51 22-72 32-97 (114)
3 3ue2_A Poly(U)-binding-splicin 99.2 4.4E-12 1.5E-16 100.1 4.4 52 21-72 39-113 (118)
4 3v4m_A Splicing factor U2AF 65 99.2 6.2E-12 2.1E-16 96.6 4.0 43 30-72 59-101 (105)
5 2pe8_A Splicing factor 45; RRM 99.2 1.2E-11 4.2E-16 95.1 4.6 54 20-73 26-99 (105)
6 3dxb_A Thioredoxin N-terminall 99.1 1.5E-11 5.1E-16 102.7 3.2 43 30-72 175-217 (222)
7 3pgw_S U1-70K; protein-RNA com 99.1 1.2E-09 4.2E-14 102.4 13.2 75 11-85 106-199 (437)
8 2dit_A HIV TAT specific factor 98.9 2.2E-09 7.5E-14 81.6 7.2 52 21-72 40-107 (112)
9 3s8s_A Histone-lysine N-methyl 98.9 1.5E-09 5E-14 83.4 6.3 56 11-66 10-84 (110)
10 4fxv_A ELAV-like protein 1; RN 98.9 1.9E-09 6.4E-14 81.1 6.0 54 12-65 24-96 (99)
11 2e5h_A Zinc finger CCHC-type a 98.9 4.5E-09 1.6E-13 76.1 7.3 54 12-65 21-93 (94)
12 2ek1_A RNA-binding protein 12; 98.9 3.5E-09 1.2E-13 76.8 6.5 54 13-66 21-93 (95)
13 2lkz_A RNA-binding protein 5; 98.9 2.5E-09 8.6E-14 80.8 5.9 63 4-66 6-93 (95)
14 1fjc_A Nucleolin RBD2, protein 98.9 7.6E-09 2.6E-13 75.3 8.0 66 1-66 3-89 (96)
15 3mdf_A Peptidyl-prolyl CIS-tra 98.9 4.7E-09 1.6E-13 74.5 6.6 54 12-65 12-84 (85)
16 1whx_A Hypothetical protein ri 98.8 3.1E-09 1.1E-13 81.0 5.8 59 13-71 16-87 (111)
17 3bs9_A Nucleolysin TIA-1 isofo 98.8 5.2E-09 1.8E-13 74.5 6.3 54 13-66 12-84 (87)
18 2cqc_A Arginine/serine-rich sp 98.8 4.4E-09 1.5E-13 76.1 5.9 54 13-66 21-93 (95)
19 1x4c_A Splicing factor, argini 98.8 1.1E-08 3.7E-13 77.0 8.1 55 12-66 20-91 (108)
20 3md1_A Nuclear and cytoplasmic 98.8 7E-09 2.4E-13 73.3 6.7 53 14-66 8-79 (83)
21 2fc8_A NCL protein; structure 98.8 6.4E-09 2.2E-13 76.5 6.5 55 12-66 20-90 (102)
22 2cqp_A RNA-binding protein 12; 98.8 7.6E-09 2.6E-13 75.6 6.7 54 13-66 21-93 (98)
23 2cqb_A Peptidyl-prolyl CIS-tra 98.8 6.6E-09 2.3E-13 76.5 6.2 56 12-67 17-91 (102)
24 2dgu_A Heterogeneous nuclear r 98.8 2E-08 6.9E-13 74.5 8.9 56 12-67 16-82 (103)
25 2fc9_A NCL protein; structure 98.8 9.7E-09 3.3E-13 75.6 6.9 54 13-66 21-89 (101)
26 1x4a_A Splicing factor, argini 98.8 7.9E-09 2.7E-13 77.3 6.4 54 13-66 28-97 (109)
27 1wg1_A KIAA1579 protein, homol 98.8 1.1E-08 3.8E-13 74.2 6.9 59 12-70 10-80 (88)
28 4a8x_A RNA-binding protein wit 98.8 9.6E-09 3.3E-13 73.1 6.2 55 12-66 9-83 (88)
29 2dnz_A Probable RNA-binding pr 98.8 7.9E-09 2.7E-13 74.9 5.8 55 12-66 10-83 (95)
30 2cq3_A RNA-binding protein 9; 98.8 1.2E-08 4E-13 75.4 6.8 55 13-67 21-92 (103)
31 4f25_A Polyadenylate-binding p 98.8 9.6E-09 3.3E-13 78.4 6.4 55 12-66 10-81 (115)
32 3ulh_A THO complex subunit 4; 98.8 8.9E-09 3E-13 76.4 6.0 54 13-66 35-106 (107)
33 2dnp_A RNA-binding protein 14; 98.8 1.2E-08 4.2E-13 73.8 6.5 56 12-67 14-80 (90)
34 1whw_A Hypothetical protein ri 98.8 8.8E-09 3E-13 75.4 5.8 56 13-68 14-88 (99)
35 2cq0_A Eukaryotic translation 98.8 1.1E-08 3.6E-13 75.6 6.2 55 13-67 21-94 (103)
36 2cpz_A CUG triplet repeat RNA- 98.8 1.1E-08 3.7E-13 77.2 6.3 54 13-66 31-103 (115)
37 2dgo_A Cytotoxic granule-assoc 98.8 1.1E-08 3.7E-13 77.0 6.3 54 13-66 21-93 (115)
38 1x5s_A Cold-inducible RNA-bind 98.8 6.4E-09 2.2E-13 76.5 4.9 55 12-66 17-90 (102)
39 2cqi_A Nucleolysin TIAR; RNA r 98.8 1.3E-08 4.4E-13 75.2 6.4 54 13-66 21-91 (103)
40 2ywk_A Putative RNA-binding pr 98.8 1E-08 3.5E-13 74.3 5.7 54 13-66 22-93 (95)
41 2do4_A Squamous cell carcinoma 98.8 1.5E-08 5E-13 74.5 6.5 54 13-66 23-94 (100)
42 2x1f_A MRNA 3'-END-processing 98.8 1.3E-08 4.4E-13 74.5 6.2 55 13-67 8-81 (96)
43 2xnq_A Nuclear polyadenylated 98.7 1.3E-08 4.4E-13 75.7 6.1 54 13-66 28-93 (97)
44 1x5u_A Splicing factor 3B subu 98.7 1E-08 3.5E-13 75.8 5.3 54 13-66 21-93 (105)
45 2dnm_A SRP46 splicing factor; 98.7 7.9E-09 2.7E-13 76.4 4.7 56 12-67 18-92 (103)
46 2cqh_A IGF-II mRNA-binding pro 98.7 1.3E-08 4.3E-13 74.0 5.6 55 12-66 13-81 (93)
47 2do0_A HnRNP M, heterogeneous 98.7 1.7E-08 5.9E-13 75.6 6.6 55 12-66 20-92 (114)
48 2d9p_A Polyadenylate-binding p 98.7 1.2E-08 4.1E-13 75.4 5.6 56 12-67 20-92 (103)
49 2dgt_A RNA-binding protein 30; 98.7 1.8E-08 6.2E-13 73.2 6.4 55 12-66 15-80 (92)
50 1p27_B RNA-binding protein 8A; 98.7 1.4E-08 4.7E-13 75.2 5.6 53 13-65 29-100 (106)
51 1x5t_A Splicing factor 3B subu 98.7 1.5E-08 5.1E-13 73.6 5.7 56 12-67 10-85 (96)
52 1why_A Hypothetical protein ri 98.7 1.6E-08 5.3E-13 74.2 5.8 55 12-66 22-91 (97)
53 2ytc_A PRE-mRNA-splicing facto 98.7 1.5E-08 5.1E-13 72.1 5.5 53 13-65 18-84 (85)
54 2lxi_A RNA-binding protein 10; 98.7 1.2E-08 4.1E-13 75.3 5.1 53 13-65 7-80 (91)
55 3ex7_B RNA-binding protein 8A; 98.7 1.2E-08 4.2E-13 77.8 5.3 54 13-66 28-100 (126)
56 1oo0_B CG8781-PA, drosophila Y 98.7 2.3E-08 7.7E-13 74.7 6.6 53 13-65 32-103 (110)
57 2cpj_A Non-POU domain-containi 98.7 1.4E-08 4.9E-13 74.7 5.4 54 13-66 21-87 (99)
58 2wbr_A GW182, gawky, LD47780P; 98.7 1.6E-08 5.5E-13 78.0 5.8 54 12-65 12-78 (89)
59 3md3_A Nuclear and cytoplasmic 98.7 2.3E-08 7.9E-13 76.8 6.6 53 13-65 93-164 (166)
60 2cpd_A Apobec-1 stimulating pr 98.7 2.1E-08 7.3E-13 73.7 6.1 54 13-66 21-87 (99)
61 2jvo_A Nucleolar protein 3; nu 98.7 2.7E-08 9.2E-13 75.7 6.8 54 13-66 37-101 (108)
62 1p1t_A Cleavage stimulation fa 98.7 1.2E-08 4.1E-13 75.1 4.7 56 12-67 13-87 (104)
63 2dnq_A RNA-binding protein 4B; 98.7 1.5E-08 5.3E-13 73.3 5.1 56 12-67 13-79 (90)
64 2jvr_A Nucleolar protein 3; RN 98.7 2.2E-08 7.5E-13 78.0 6.3 55 12-66 33-103 (111)
65 2e5j_A Methenyltetrahydrofolat 98.7 1.4E-08 4.9E-13 74.6 5.0 54 13-66 25-92 (97)
66 2err_A Ataxin-2-binding protei 98.7 2E-08 7E-13 75.9 6.0 54 13-66 35-105 (109)
67 2cpi_A CCR4-NOT transcription 98.7 1.3E-08 4.6E-13 77.0 4.9 54 13-66 21-99 (111)
68 3beg_B Splicing factor, argini 98.7 2E-08 6.8E-13 76.8 5.7 53 12-64 21-85 (115)
69 1x4g_A Nucleolysin TIAR; struc 98.7 2.3E-08 7.8E-13 74.9 5.9 55 12-66 30-97 (109)
70 2dgv_A HnRNP M, heterogeneous 98.7 1.5E-08 5.1E-13 73.0 4.6 55 12-66 13-84 (92)
71 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.7 2.3E-08 7.9E-13 76.8 5.9 52 14-65 70-140 (140)
72 1x5p_A Negative elongation fac 98.7 3.9E-08 1.3E-12 72.2 6.8 51 17-67 23-86 (97)
73 2khc_A Testis-specific RNP-typ 98.7 1.8E-08 6E-13 76.2 5.0 52 14-65 47-117 (118)
74 2cpf_A RNA binding motif prote 98.7 2.6E-08 8.7E-13 72.8 5.7 56 12-67 10-87 (98)
75 2dng_A Eukaryotic translation 98.7 2.8E-08 9.6E-13 73.6 6.0 53 13-66 21-91 (103)
76 1wf1_A RNA-binding protein RAL 98.7 2.4E-08 8.3E-13 74.9 5.7 54 13-66 33-98 (110)
77 2dgs_A DAZ-associated protein 98.7 2.8E-08 9.7E-13 72.9 5.8 54 12-66 15-87 (99)
78 2kvi_A Nuclear polyadenylated 98.7 1.7E-08 5.9E-13 74.2 4.6 55 12-66 15-81 (96)
79 1nu4_A U1A RNA binding domain; 98.7 3.3E-08 1.1E-12 71.9 6.1 56 12-67 13-88 (97)
80 2dgw_A Probable RNA-binding pr 98.7 3.6E-08 1.2E-12 71.3 6.2 55 12-67 15-86 (91)
81 1x4h_A RNA-binding protein 28; 98.7 2.6E-08 9E-13 74.1 5.6 54 13-66 21-99 (111)
82 2kxn_B Transformer-2 protein h 98.7 2.8E-08 9.6E-13 78.0 6.0 55 12-66 51-124 (129)
83 1u6f_A Tcubp1, RNA-binding pro 98.7 2.5E-08 8.5E-13 77.3 5.6 55 14-68 49-122 (139)
84 2dgx_A KIAA0430 protein; RRM d 98.7 3.8E-08 1.3E-12 72.5 6.3 55 12-66 14-88 (96)
85 2cpx_A Hypothetical protein FL 98.7 2.3E-08 8E-13 74.9 5.3 56 13-68 31-105 (115)
86 1h2v_Z 20 kDa nuclear CAP bind 98.7 3.3E-08 1.1E-12 78.4 6.4 54 13-66 45-117 (156)
87 3r27_A HnRNP L, heterogeneous 98.7 2.5E-08 8.7E-13 77.4 5.5 56 12-67 26-96 (100)
88 2cph_A RNA binding motif prote 98.7 3.1E-08 1.1E-12 73.2 5.7 55 13-67 21-96 (107)
89 3ucg_A Polyadenylate-binding p 98.7 2.9E-08 9.9E-13 70.9 5.4 52 14-66 13-83 (89)
90 2kt5_A RNA and export factor-b 98.7 3.4E-08 1.2E-12 75.5 6.1 54 14-67 42-113 (124)
91 2cqd_A RNA-binding region cont 98.7 2.2E-08 7.5E-13 75.6 4.9 53 13-66 23-94 (116)
92 1fje_B Nucleolin RBD12, protei 98.7 3.6E-08 1.2E-12 77.5 6.4 54 13-66 105-172 (175)
93 2dnh_A Bruno-like 5, RNA bindi 98.7 2.8E-08 9.7E-13 73.4 5.4 54 13-66 21-95 (105)
94 2jrs_A RNA-binding protein 39; 98.6 2.8E-08 9.6E-13 75.4 5.2 54 13-66 32-104 (108)
95 2fy1_A RNA-binding motif prote 98.6 3.7E-08 1.3E-12 75.6 6.0 56 12-67 12-85 (116)
96 3p5t_L Cleavage and polyadenyl 98.6 1.2E-08 4.3E-13 74.2 3.1 54 13-66 7-81 (90)
97 2cq4_A RNA binding motif prote 98.6 3.3E-08 1.1E-12 74.4 5.4 52 13-65 31-101 (114)
98 1fj7_A Nucleolin RBD1, protein 98.6 2.7E-08 9.1E-13 73.3 4.7 53 13-66 23-93 (101)
99 2dgp_A Bruno-like 4, RNA bindi 98.6 3.5E-08 1.2E-12 73.0 5.2 54 13-66 19-94 (106)
100 3lqv_A PRE-mRNA branch site pr 98.6 3.8E-08 1.3E-12 74.0 5.4 55 12-66 13-83 (115)
101 2la4_A Nuclear and cytoplasmic 98.6 2.6E-08 8.8E-13 73.3 4.3 53 13-65 33-98 (101)
102 2cpe_A RNA-binding protein EWS 98.6 6.4E-08 2.2E-12 72.5 6.5 54 13-66 21-101 (113)
103 1wel_A RNA-binding protein 12; 98.6 2.4E-08 8.1E-13 76.8 4.1 54 13-67 31-103 (124)
104 4f02_A Polyadenylate-binding p 98.6 5.2E-08 1.8E-12 80.7 6.4 53 13-65 109-178 (213)
105 2la6_A RNA-binding protein FUS 98.6 4.5E-08 1.5E-12 72.0 5.4 54 12-65 18-98 (99)
106 2qfj_A FBP-interacting repress 98.6 4.5E-08 1.5E-12 78.9 5.8 54 13-66 131-203 (216)
107 3ns6_A Eukaryotic translation 98.6 1.8E-08 6.2E-13 75.1 3.2 48 18-65 23-90 (100)
108 1wi8_A EIF-4B, eukaryotic tran 98.6 7.7E-08 2.6E-12 71.3 6.5 55 12-67 20-93 (104)
109 2ad9_A Polypyrimidine tract-bi 98.6 6.7E-08 2.3E-12 76.8 6.4 59 12-70 36-109 (119)
110 2cq2_A Hypothetical protein LO 98.6 6.5E-08 2.2E-12 76.7 6.2 58 13-70 33-108 (114)
111 2dnn_A RNA-binding protein 12; 98.6 2.8E-08 9.6E-13 76.9 4.1 58 13-71 22-96 (109)
112 2cq1_A PTB-like protein L; RRM 98.6 8.6E-08 3E-12 73.2 6.6 56 13-68 21-91 (101)
113 1b7f_A Protein (SXL-lethal pro 98.6 2.2E-07 7.7E-12 71.9 9.0 55 13-67 9-82 (168)
114 2g4b_A Splicing factor U2AF 65 98.6 4.4E-08 1.5E-12 76.4 5.0 53 13-65 100-171 (172)
115 2kn4_A Immunoglobulin G-bindin 98.6 5.1E-08 1.7E-12 76.9 5.3 55 13-67 76-149 (158)
116 2mss_A Protein (musashi1); RNA 98.6 3.5E-08 1.2E-12 68.8 3.9 51 14-65 6-75 (75)
117 2hvz_A Splicing factor, argini 98.6 3.2E-08 1.1E-12 72.8 3.8 54 14-67 7-74 (101)
118 1sjq_A Polypyrimidine tract-bi 98.6 4.7E-08 1.6E-12 76.4 4.9 59 11-69 20-93 (105)
119 1b7f_A Protein (SXL-lethal pro 98.6 7.1E-08 2.4E-12 74.7 5.6 53 13-65 95-168 (168)
120 3zzy_A Polypyrimidine tract-bi 98.5 2.4E-07 8E-12 75.1 8.5 70 12-81 33-123 (130)
121 1x4d_A Matrin 3; structural ge 98.5 4.6E-08 1.6E-12 75.4 4.1 55 12-66 20-90 (102)
122 2db1_A Heterogeneous nuclear r 98.5 9.5E-08 3.3E-12 73.5 5.8 56 12-68 22-98 (118)
123 1fxl_A Paraneoplastic encephal 98.5 3.2E-07 1.1E-11 70.5 8.7 55 14-68 9-82 (167)
124 2bz2_A Negative elongation fac 98.5 1.4E-07 4.7E-12 73.5 6.7 56 17-72 47-115 (121)
125 2nlw_A Eukaryotic translation 98.5 5.9E-08 2E-12 72.8 4.4 51 20-70 34-103 (105)
126 2f3j_A RNA and export factor b 98.5 7.5E-08 2.6E-12 79.6 5.3 55 14-68 95-167 (177)
127 1wex_A Hypothetical protein (r 98.5 8.1E-08 2.8E-12 73.6 5.1 57 13-69 21-92 (104)
128 1rk8_A CG8781-PA, CG8781-PA pr 98.5 1.3E-07 4.4E-12 76.1 6.4 54 13-66 78-150 (165)
129 2jwn_A Embryonic polyadenylate 98.5 6.9E-08 2.4E-12 73.4 4.4 51 15-66 44-113 (124)
130 1x5o_A RNA binding motif, sing 98.5 1.2E-07 3.9E-12 71.2 5.6 54 13-66 31-110 (114)
131 1wg5_A Heterogeneous nuclear r 98.5 1.2E-07 4.1E-12 70.9 5.6 60 12-72 20-98 (104)
132 2div_A TRNA selenocysteine ass 98.5 9.4E-08 3.2E-12 69.9 4.9 55 12-66 14-92 (99)
133 2i2y_A Fusion protein consists 98.5 7.5E-08 2.6E-12 75.8 4.6 54 13-66 79-146 (150)
134 3pgw_A U1-A; protein-RNA compl 98.5 1.4E-07 4.7E-12 80.1 6.3 53 13-65 213-280 (282)
135 2dhg_A TRNA selenocysteine ass 98.5 6.3E-08 2.2E-12 71.4 3.5 55 12-66 14-88 (104)
136 3n9u_C Cleavage and polyadenyl 98.5 1.5E-07 5E-12 76.6 5.9 54 13-66 61-135 (156)
137 3tyt_A Heterogeneous nuclear r 98.5 1.6E-07 5.6E-12 78.8 6.4 54 13-66 10-78 (205)
138 2krb_A Eukaryotic translation 98.5 3.4E-08 1.1E-12 70.4 1.8 43 20-62 20-80 (81)
139 2cpy_A RNA-binding protein 12; 98.5 1.7E-07 5.9E-12 71.2 5.8 54 12-66 20-92 (114)
140 1wez_A HnRNP H', FTP-3, hetero 98.5 9.2E-08 3.2E-12 72.1 4.2 55 12-67 20-91 (102)
141 2dh8_A DAZ-associated protein 98.5 9.1E-08 3.1E-12 70.8 4.0 55 11-66 20-93 (105)
142 3egn_A RNA-binding protein 40; 98.5 1.4E-07 4.8E-12 73.7 5.3 54 13-66 51-128 (143)
143 1fxl_A Paraneoplastic encephal 98.5 1.5E-07 5.3E-12 72.3 5.4 53 13-65 94-167 (167)
144 2a3j_A U1 small nuclear ribonu 98.5 1.2E-07 4.1E-12 75.2 4.8 55 13-67 35-109 (127)
145 2j76_E EIF-4B, EIF4B, eukaryot 98.5 1.2E-07 4.1E-12 70.3 4.5 54 12-66 24-96 (100)
146 2e44_A Insulin-like growth fac 98.5 1.5E-07 5.1E-12 68.4 4.8 55 14-68 22-92 (96)
147 1s79_A Lupus LA protein; RRM, 98.5 1E-07 3.6E-12 72.4 4.1 53 12-65 16-86 (103)
148 1x4f_A Matrin 3; structural ge 98.5 1.4E-07 4.8E-12 74.2 4.9 54 13-66 31-100 (112)
149 2lea_A Serine/arginine-rich sp 98.5 7.6E-08 2.6E-12 76.0 3.3 55 13-67 53-126 (135)
150 2ki2_A SS-DNA binding protein 98.5 3.2E-08 1.1E-12 71.2 1.1 53 15-68 9-80 (90)
151 3s7r_A Heterogeneous nuclear r 98.5 2.8E-07 9.5E-12 65.9 6.0 53 12-65 16-87 (87)
152 2yh0_A Splicing factor U2AF 65 98.5 1.3E-07 4.4E-12 75.3 4.6 53 14-66 121-192 (198)
153 1sjr_A Polypyrimidine tract-bi 98.4 4.3E-07 1.5E-11 76.3 7.8 68 12-79 51-139 (164)
154 1x4b_A Heterogeneous nuclear r 98.4 2.2E-07 7.7E-12 70.0 5.5 52 14-66 34-104 (116)
155 1uaw_A Mouse-musashi-1; RNP-ty 98.4 1.3E-07 4.5E-12 65.8 3.9 51 14-65 7-76 (77)
156 2e5i_A Heterogeneous nuclear r 98.4 3.4E-07 1.1E-11 73.1 6.3 56 13-68 31-102 (124)
157 2diu_A KIAA0430 protein; struc 98.4 1.7E-07 6E-12 73.3 4.3 56 12-67 14-83 (96)
158 1x4e_A RNA binding motif, sing 98.4 5.9E-08 2E-12 69.1 1.4 53 12-64 10-81 (85)
159 3md3_A Nuclear and cytoplasmic 98.4 2.4E-07 8.1E-12 71.2 4.9 52 15-66 8-77 (166)
160 2hzc_A Splicing factor U2AF 65 98.4 3.2E-07 1.1E-11 65.1 5.2 51 13-64 12-86 (87)
161 3nmr_A Cugbp ELAV-like family 98.4 3.1E-07 1.1E-11 71.3 5.4 52 14-65 102-174 (175)
162 2dis_A Unnamed protein product 98.4 2.4E-07 8.3E-12 68.8 4.6 55 12-66 13-90 (109)
163 2lmi_A GRSF-1, G-rich sequence 98.4 2.1E-07 7.3E-12 69.9 4.1 54 13-67 17-91 (107)
164 2hgn_A Heterogeneous nuclear r 98.4 1.6E-07 5.5E-12 75.8 3.5 58 11-69 50-124 (139)
165 2hgl_A HNRPF protein, heteroge 98.4 2.8E-07 9.7E-12 74.0 4.9 55 12-67 49-124 (136)
166 3smz_A Protein raver-1, ribonu 98.4 5E-07 1.7E-11 76.7 6.6 56 14-69 191-265 (284)
167 2rs2_A Musashi-1, RNA-binding 98.4 5.9E-07 2E-11 68.0 6.2 53 13-66 31-102 (109)
168 2m2b_A RNA-binding protein 10; 98.4 1.5E-07 5.1E-12 73.1 2.9 53 13-66 29-106 (131)
169 2cjk_A Nuclear polyadenylated 98.4 3E-07 1E-11 71.2 4.5 51 15-66 95-164 (167)
170 2e5g_A U6 snRNA-specific termi 98.4 4.2E-07 1.4E-11 66.3 4.9 55 12-67 13-81 (94)
171 1qm9_A Polypyrimidine tract-bi 98.3 3.2E-07 1.1E-11 73.8 4.6 54 13-66 126-195 (198)
172 1iqt_A AUF1, heterogeneous nuc 98.3 3.4E-07 1.1E-11 63.6 3.6 51 14-65 6-75 (75)
173 1fje_B Nucleolin RBD12, protei 98.3 6.5E-07 2.2E-11 70.3 5.7 55 12-67 18-90 (175)
174 2qfj_A FBP-interacting repress 98.3 6.8E-07 2.3E-11 72.0 5.4 54 13-66 34-106 (216)
175 2cqg_A TDP-43, TAR DNA-binding 98.3 1.2E-06 4E-11 64.6 6.1 52 13-66 21-91 (103)
176 3q2s_C Cleavage and polyadenyl 98.3 3E-07 1E-11 78.9 3.3 55 12-66 73-148 (229)
177 2adc_A Polypyrimidine tract-bi 98.3 5.4E-07 1.8E-11 75.4 4.6 54 13-66 40-108 (229)
178 1l3k_A Heterogeneous nuclear r 98.3 1.1E-06 3.6E-11 69.9 6.0 53 13-66 110-181 (196)
179 4f02_A Polyadenylate-binding p 98.3 1.4E-06 4.8E-11 72.1 6.9 56 12-67 20-94 (213)
180 1qm9_A Polypyrimidine tract-bi 98.3 5.7E-07 2E-11 72.3 4.2 54 14-67 10-78 (198)
181 2lcw_A RNA-binding protein FUS 97.6 1.1E-07 3.8E-12 71.9 0.0 56 11-66 11-93 (116)
182 2adc_A Polypyrimidine tract-bi 98.2 1.5E-06 5.3E-11 72.6 6.2 53 14-66 158-226 (229)
183 3smz_A Protein raver-1, ribonu 98.2 2.1E-06 7.1E-11 72.9 7.0 55 12-66 27-93 (284)
184 3pgw_A U1-A; protein-RNA compl 98.2 2.1E-06 7.2E-11 72.8 6.7 56 11-66 13-88 (282)
185 3sde_A Paraspeckle component 1 98.2 2.1E-06 7.2E-11 73.3 6.7 54 13-66 28-94 (261)
186 2d9o_A DNAJ (HSP40) homolog, s 98.2 1.5E-06 5.3E-11 66.6 5.1 49 16-66 26-88 (100)
187 2yh0_A Splicing factor U2AF 65 98.2 1.2E-06 4.2E-11 69.6 4.8 53 13-66 10-86 (198)
188 2ghp_A U4/U6 snRNA-associated 98.2 1.9E-06 6.4E-11 73.5 6.2 51 15-66 218-289 (292)
189 2g4b_A Splicing factor U2AF 65 98.2 2.2E-06 7.7E-11 66.6 6.1 53 13-66 10-86 (172)
190 2hgm_A HNRPF protein, heteroge 98.2 4.6E-07 1.6E-11 72.3 1.6 54 12-66 47-119 (126)
191 2dha_A FLJ20171 protein; RRM d 98.2 9.3E-07 3.2E-11 69.9 3.3 56 12-68 28-105 (123)
192 2dnl_A Cytoplasmic polyadenyla 98.1 3.5E-06 1.2E-10 63.9 6.2 63 12-76 13-96 (114)
193 1l3k_A Heterogeneous nuclear r 98.1 3.7E-06 1.3E-10 66.7 6.0 54 12-66 18-90 (196)
194 2voo_A Lupus LA protein; RNA-b 98.1 4.6E-06 1.6E-10 69.6 5.9 52 13-65 115-184 (193)
195 3u1l_A PRE-mRNA-splicing facto 98.1 1.7E-06 5.9E-11 76.3 3.2 48 20-67 156-228 (240)
196 2xs2_A Deleted in azoospermia- 98.0 3.3E-06 1.1E-10 62.0 2.8 51 13-65 15-83 (102)
197 2ghp_A U4/U6 snRNA-associated 98.0 1E-05 3.6E-10 68.9 6.1 54 13-66 123-195 (292)
198 3sde_A Paraspeckle component 1 97.9 1.1E-05 3.8E-10 68.8 5.6 54 13-66 102-177 (261)
199 3tht_A Alkylated DNA repair pr 97.8 2E-05 7E-10 72.7 5.6 86 16-109 29-132 (345)
200 2cjk_A Nuclear polyadenylated 97.8 2.7E-05 9.3E-10 60.2 5.4 52 13-66 9-79 (167)
201 3nmr_A Cugbp ELAV-like family 97.8 2.4E-05 8.3E-10 60.5 5.0 54 13-66 9-86 (175)
202 3d2w_A TAR DNA-binding protein 97.7 5.4E-05 1.9E-09 55.4 5.9 51 12-66 16-82 (89)
203 3tyt_A Heterogeneous nuclear r 97.7 2.1E-05 7.3E-10 65.9 3.7 51 14-64 130-203 (205)
204 1wf0_A TDP-43, TAR DNA-binding 97.6 3.6E-05 1.2E-09 55.2 3.5 51 12-66 10-76 (88)
205 2j8a_A Histone-lysine N-methyl 97.6 5.8E-05 2E-09 62.5 4.8 52 16-67 15-95 (136)
206 2dnr_A Synaptojanin-1; RRM dom 97.2 0.00033 1.1E-08 54.2 4.7 48 22-71 30-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 97.0 0.00066 2.3E-08 53.0 4.5 41 23-64 40-91 (95)
208 1owx_A Lupus LA protein, SS-B, 96.0 0.015 5.1E-07 46.5 6.5 50 16-65 27-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 95.9 0.013 4.6E-07 47.4 6.0 53 12-64 26-96 (117)
210 2i2y_A Fusion protein consists 94.5 0.011 3.7E-07 46.1 1.3 36 30-66 13-49 (150)
211 1m9o_A Tristetraproline; Cys3H 92.4 0.084 2.9E-06 37.6 2.9 33 65-97 5-38 (77)
212 2d9n_A Cleavage and polyadenyl 92.3 0.052 1.8E-06 39.7 1.7 30 68-97 6-35 (77)
213 3d2q_A Muscleblind-like protei 90.2 0.076 2.6E-06 38.2 0.8 24 72-95 6-30 (70)
214 2rhk_C Cleavage and polyadenyl 90.0 0.09 3.1E-06 38.2 1.0 32 65-96 9-40 (72)
215 1wey_A Calcipressin 1; structu 89.8 0.37 1.3E-05 38.0 4.5 40 30-69 46-85 (104)
216 2kn4_A Immunoglobulin G-bindin 89.6 0.32 1.1E-05 37.7 4.0 24 30-53 13-36 (158)
217 3d2q_A Muscleblind-like protei 88.5 0.13 4.5E-06 36.9 1.0 27 68-95 38-64 (70)
218 2e5s_A Otthump00000018578; ZF- 88.3 0.21 7E-06 38.5 2.0 36 68-107 52-87 (98)
219 3d2n_A Muscleblind-like protei 88.2 0.22 7.4E-06 37.4 2.0 26 71-96 8-34 (83)
220 2cqe_A KIAA1064 protein; CCCH 88.0 0.3 1E-05 37.4 2.8 25 70-94 11-35 (98)
221 2d9m_A Zinc finger CCCH-type d 87.8 0.16 5.5E-06 37.6 1.1 33 66-103 16-48 (69)
222 2rpp_A Muscleblind-like protei 85.9 0.26 9E-06 37.5 1.4 26 71-96 16-42 (89)
223 2rhk_C Cleavage and polyadenyl 83.7 0.25 8.6E-06 35.8 0.4 47 50-99 23-71 (72)
224 3u1l_A PRE-mRNA-splicing facto 83.1 0.27 9.2E-06 43.1 0.4 30 73-102 71-100 (240)
225 1wwh_A Nucleoporin 35, nucleop 82.9 1.1 3.8E-05 36.0 3.9 46 21-68 37-95 (119)
226 1m9o_A Tristetraproline; Cys3H 82.5 0.26 8.8E-06 35.1 0.0 27 69-95 47-74 (77)
227 2e5s_A Otthump00000018578; ZF- 82.3 0.15 5.2E-06 39.2 -1.3 27 71-97 19-46 (98)
228 3d2n_A Muscleblind-like protei 82.0 0.67 2.3E-05 34.7 2.1 31 71-105 42-72 (83)
229 2cqe_A KIAA1064 protein; CCCH 81.2 0.86 2.9E-05 34.8 2.5 25 72-96 36-61 (98)
230 3p3d_A Nucleoporin 53; structu 78.6 2.5 8.7E-05 34.5 4.7 34 30-64 62-95 (132)
231 2fc6_A Nuclear, target of EGR1 77.8 0.74 2.5E-05 32.2 1.1 29 70-98 18-47 (50)
232 1uw4_A UPF3X; nonsense mediate 76.5 5.6 0.00019 30.1 5.8 52 16-67 10-87 (91)
233 2d9n_A Cleavage and polyadenyl 75.9 0.87 3E-05 33.0 1.1 44 51-97 18-63 (77)
234 2rpp_A Muscleblind-like protei 73.8 1.4 4.8E-05 33.5 1.8 32 71-106 50-81 (89)
235 2l08_A Regulator of nonsense t 72.3 7 0.00024 30.2 5.5 53 15-67 17-95 (97)
236 3pim_A Peptide methionine sulf 67.4 1.1 3.9E-05 38.4 0.0 78 16-97 87-186 (187)
237 1hy9_A Cocaine and amphetamine 30.6 20 0.0007 24.0 1.4 13 82-94 26-38 (41)
238 1whv_A Poly(A)-specific ribonu 27.2 99 0.0034 24.1 5.0 35 17-51 25-70 (100)
239 2g0c_A ATP-dependent RNA helic 21.2 43 0.0015 23.1 1.7 33 32-65 42-74 (76)
240 3e0m_A Peptide methionine sulf 21.1 23 0.0008 32.5 0.4 55 17-73 61-135 (313)
241 2dhx_A Poly (ADP-ribose) polym 20.9 2.1E+02 0.0072 22.3 5.8 48 15-63 16-79 (104)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=5.1e-15 Score=113.49 Aligned_cols=66 Identities=38% Similarity=0.732 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHhHc------------C------------------cccEEEEeCCHHHHHHHHHHh
Q 026083 1 MYQRLDMITPGVDAQGNPLDPRKIQEHF------------E------------------VGNVYVQFREEEQAARALKSL 50 (243)
Q Consensus 1 mYqnP~~~~~~~d~~~~~~~~e~lqehF------------E------------------~GNVYVkF~~ee~A~~Ai~aL 50 (243)
||+||.+....++.+...+++++|+++| + .|++||+|.++++|++|+.+|
T Consensus 9 m~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 9 IYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp EEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 8999987665445445567888888777 3 699999999999999999999
Q ss_pred CCceeCCeeeEEEecc
Q 026083 51 SGRFYAGRPIIVDFSP 66 (243)
Q Consensus 51 NGR~FaGR~I~vEfsp 66 (243)
||++|+||+|.|+|+|
T Consensus 89 ng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 89 NNRWFNGQPIHAELSP 104 (104)
T ss_dssp TTCEETTEECCEEECC
T ss_pred CCCEECCEEEEEEEcC
Confidence 9999999999999987
No 2
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.9e-12 Score=100.76 Aligned_cols=51 Identities=29% Similarity=0.587 Sum_probs=46.6
Q ss_pred HHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 22 RKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 22 e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
++|.+.|+ .|+|||+|.+.++|.+|+++|||+||+||+|.|+|+++++|..
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred HHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 45677776 5999999999999999999999999999999999999999854
No 3
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=4.4e-12 Score=100.13 Aligned_cols=52 Identities=21% Similarity=0.520 Sum_probs=47.7
Q ss_pred HHHHHhHcC--------------c---------ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 21 PRKIQEHFE--------------V---------GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 21 ~e~lqehFE--------------~---------GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
+++|.+.|+ . |+|||+|.++++|.+|+++||||||+||+|.|+|+++++|..
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 113 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhccc
Confidence 578888888 2 899999999999999999999999999999999999988853
No 4
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=6.2e-12 Score=96.63 Aligned_cols=43 Identities=21% Similarity=0.568 Sum_probs=40.4
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.|+|||+|.++++|.+|+++|||+||+||+|.|+|+++..|..
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 3999999999999999999999999999999999999888753
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.19 E-value=1.2e-11 Score=95.11 Aligned_cols=54 Identities=26% Similarity=0.480 Sum_probs=49.7
Q ss_pred CHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 20 DPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 20 ~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
.+++|++.|+ .|++||+|.++++|.+|+++|||+||+||+|.|+|++.+.|...
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence 5789999998 48999999999999999999999999999999999988887653
No 6
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=1.5e-11 Score=102.69 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=41.0
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
.|+|||+|.++++|.+|+++||||||+||+|.|+|+++++|..
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 217 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHT
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhh
Confidence 5899999999999999999999999999999999999999854
No 7
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.07 E-value=1.2e-09 Score=102.38 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
.|.++...+++++|.++|. .|++||+|.++++|++||.+|||.+|.|++|.|+|+......
T Consensus 106 fV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCC
Confidence 4456778899999999998 689999999999999999999999999999999998544433
Q ss_pred cccccccccCCCCC
Q 026083 72 EATCRQYEENTCNR 85 (243)
Q Consensus 72 eA~Crq~~~g~C~R 85 (243)
...++..--|.+..
T Consensus 186 ~~~~~~~ggG~gg~ 199 (437)
T 3pgw_S 186 GWRPRRLGGGLGGT 199 (437)
T ss_pred CCCCCCcCCCCCCC
Confidence 33333333333333
No 8
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.2e-09 Score=81.63 Aligned_cols=52 Identities=27% Similarity=0.505 Sum_probs=47.4
Q ss_pred HHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec-cCCCCCc
Q 026083 21 PRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDFRE 72 (243)
Q Consensus 21 ~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs-pVtdFre 72 (243)
+++|.++|+ .|++||+|.++++|++|+..|||++|+|++|.|+++ |.++|..
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQS 107 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSC
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCccc
Confidence 578999997 599999999999999999999999999999999995 7788854
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=83.44 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+.++...+++++|+++|+ .|++||+|.+.++|++||+.|||..+.|++|.|++++
T Consensus 10 fV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3455678899999999998 6899999999999999999999999999999999975
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.90 E-value=1.9e-09 Score=81.09 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|++.|||..+.|++|.|+++
T Consensus 24 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345678899999999997 689999999999999999999999999999999997
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.5e-09 Score=76.07 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++
T Consensus 21 V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 21 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 344567899999999998 489999999999999999999999999999999986
No 12
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.87 E-value=3.5e-09 Score=76.82 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 21 QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp ECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 44567899999999998 5899999999999999999999999999999999864
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.87 E-value=2.5e-09 Score=80.81 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 026083 4 RLDMITPGVDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGR----FYAGR 58 (243)
Q Consensus 4 nP~~~~~~~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR----~FaGR 58 (243)
...|.+-.+.+++..+++++|.+.|+ .|+.||+|.+.++|++|+++|||. .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 44555555667788999999999998 689999999999999999999997 69999
Q ss_pred eeEEEecc
Q 026083 59 PIIVDFSP 66 (243)
Q Consensus 59 ~I~vEfsp 66 (243)
+|.|+|+.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999964
No 14
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.86 E-value=7.6e-09 Score=75.34 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCCCCCCCC-------CCCCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCee
Q 026083 1 MYQRLDMITP-------GVDAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRP 59 (243)
Q Consensus 1 mYqnP~~~~~-------~~d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~ 59 (243)
||.+|..... .+.+++..+++++|+++|+ .|++||+|.++++|++|+..|||..+.|++
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 7777753211 1234567899999999997 589999999999999999999999999999
Q ss_pred eEEEecc
Q 026083 60 IIVDFSP 66 (243)
Q Consensus 60 I~vEfsp 66 (243)
|.|+++.
T Consensus 83 l~v~~a~ 89 (96)
T 1fjc_A 83 VSLYYTG 89 (96)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9999973
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.86 E-value=4.7e-09 Score=74.47 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|.+.|+ .|++||+|.++++|++|++.|||..+.|++|.|+++
T Consensus 12 V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345567889999999998 688999999999999999999999999999999985
No 16
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=3.1e-09 Score=81.03 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++||..|||..|.|++|.|++++...|.
T Consensus 16 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 16 KNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 44567889999999997 699999999999999999999999999999999999876664
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.84 E-value=5.2e-09 Score=74.54 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++|++.|||..+.|++|.|+++.
T Consensus 12 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 12 GDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 44567799999999998 5899999999999999999999999999999999963
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=4.4e-09 Score=76.05 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 21 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred ECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 44567789999999997 5899999999999999999999999999999999863
No 19
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=1.1e-08 Score=76.99 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHhHcC------------cccEEEEeCCHHHHHHHHHHhCCceeCC-----eeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE------------VGNVYVQFREEEQAARALKSLSGRFYAG-----RPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG-----R~I~vEfsp 66 (243)
+.++...+++++|+++|. .|++||+|.++++|++||+.|||..|.| ++|.|+++.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp EESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 345678899999999998 2999999999999999999999999999 999999963
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.83 E-value=7e-09 Score=73.29 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+++..+++++|.++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++.
T Consensus 8 nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 8 DLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 4567789999999998 6899999999999999999999999999999999974
No 21
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=6.4e-09 Score=76.51 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|+++|+ .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp EECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345577899999999998 5899999999999999999999999999999999974
No 22
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=7.6e-09 Score=75.60 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|. .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 21 QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp ESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred eCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34567899999999998 5899999999999999999999999999999999964
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=6.6e-09 Score=76.45 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++|++.|||..|.|++|.|+++..
T Consensus 17 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 345567899999999998 68999999999999999999999999999999999744
No 24
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.81 E-value=2e-08 Score=74.52 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=50.7
Q ss_pred CCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++||..|||..+.|++|.|+++..
T Consensus 16 V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 345677899999999998 78999999999999999999999999999999999743
No 25
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=9.7e-09 Score=75.63 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.++++|++||..|||..|.|++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 21 SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp ESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 44567899999999997 6899999999999999999999999999999999974
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=7.9e-09 Score=77.28 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|+++|+ .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 28 ~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 44567889999999998 5899999999999999999999999999999999974
No 27
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.80 E-value=1.1e-08 Score=74.15 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=52.8
Q ss_pred CCCCCCCCCHHHHHhHcC------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++|++.|||..+.|++|.|+++|...+
T Consensus 10 V~nLp~~~t~~~l~~~F~~~~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 10 VKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp EESCCSSCCHHHHHHHTCSSCCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EeCCCCCCCHHHHHHHHhhCCeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 344567889999999997 59999999999999999999999999999999999987553
No 28
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.78 E-value=9.6e-09 Score=73.09 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.+.|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++.
T Consensus 9 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 345567889999999997 5799999999999999999999999999999999973
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=7.9e-09 Score=74.92 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|++||+|.+.++|++|++.|||..+.|++|.|+++.
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 10 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 344567799999999998 5899999999999999999999999999999999974
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.2e-08 Score=75.40 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++..
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 21 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp ESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 44567899999999998 58999999999999999999999999999999999743
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.78 E-value=9.6e-09 Score=78.41 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|. .|+.||+|.+.++|++||+.|||..+.|++|.|+++.
T Consensus 10 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 10 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred ECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 345678899999999998 5899999999999999999999999999999999863
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.78 E-value=8.9e-09 Score=76.36 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.++++|++|+..|||..+.|++|.|+++.
T Consensus 35 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 35 SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34577899999999997 5899999999999999999999999999999999974
No 33
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-08 Score=73.80 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++..
T Consensus 14 V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 445677899999999998 67999999999999999999999999999999999743
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.77 E-value=8.8e-09 Score=75.40 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++...
T Consensus 14 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 14 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 44567799999999997 489999999999999999999999999999999997543
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.1e-08 Score=75.65 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|.++|+ .|++||+|.++++|++||..|||..|.|++|.|+++..
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 21 TNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp ESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 44567899999999998 57999999999999999999999999999999999743
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.77 E-value=1.1e-08 Score=77.20 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 31 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 31 YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 34567889999999998 4899999999999999999999999999999999974
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.77 E-value=1.1e-08 Score=76.98 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 21 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567899999999998 4899999999999999999999999999999999973
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=6.4e-09 Score=76.53 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|+ .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 17 v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 345577899999999997 5899999999999999999999999999999999973
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.3e-08 Score=75.18 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|++|+..|||..|.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 21 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred eCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34567889999999998 4899999999999999999999999999999999974
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.76 E-value=1e-08 Score=74.31 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|++|+..|||..|.|++|.|+++.
T Consensus 22 ~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 22 GNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34567789999999998 4899999999999999999999999999999999863
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-08 Score=74.53 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.++++|++|+..|||..+.|++|.|+++.
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 23 SGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44567899999999998 3899999999999999999999999999999999974
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.75 E-value=1.3e-08 Score=74.51 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 8 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 8 GSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 34567789999999997 58999999999999999999999999999999999743
No 43
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.75 E-value=1.3e-08 Score=75.72 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=49.5
Q ss_pred CCCCC-CCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGN-PLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~-~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++.. .+++++|.++|. .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 28 ~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 28 GNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp ESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred eCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 44566 899999999998 6999999999999999999999999999999999964
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1e-08 Score=75.81 Aligned_cols=54 Identities=26% Similarity=0.304 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|++|+..|||..|.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 21 GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 44567899999999997 5899999999999999999999999999999999974
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=7.9e-09 Score=76.36 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.++...+++++|.++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++..
T Consensus 18 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 345577899999999998 48999999999999999999999999999999999753
No 46
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.3e-08 Score=73.99 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=50.3
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCC-ceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSG-RFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNG-R~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|+ .|++||+|.++++|++|++.||| ..+.|++|.|+++.
T Consensus 13 V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 445678899999999997 68999999999999999999999 99999999999974
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.7e-08 Score=75.57 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|+++|. .|++||+|.+.++|++||..|||..|.|++|.|+++.
T Consensus 20 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 345577899999999998 4899999999999999999999999999999999974
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=75.36 Aligned_cols=56 Identities=25% Similarity=0.499 Sum_probs=50.4
Q ss_pred CCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 20 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 345577899999999998 48999999999999999999999999999999999743
No 49
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=73.19 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 15 V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 15 VGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp EESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 344567899999999998 6799999999999999999999999999999999974
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=75.20 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|.++|. .|++||+|.+.++|++|+..|||..|.|++|.|+++
T Consensus 29 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 29 TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred eCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44567889999999998 489999999999999999999999999999999996
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.5e-08 Score=73.59 Aligned_cols=56 Identities=18% Similarity=0.488 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .|++||+|.++++|++|+..|||..+.|++|.|+++..
T Consensus 10 V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 345567789999999997 48999999999999999999999999999999999743
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=1.6e-08 Score=74.20 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeC--CeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYA--GRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa--GR~I~vEfsp 66 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|+..|||..+. |++|.|+++.
T Consensus 22 V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 22 VGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 344577899999999998 689999999999999999999999999 9999999974
No 53
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=72.07 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aL-NGR~FaGR~I~vEfs 65 (243)
.+++..+++++|.++|. .|++||+|.+.++|++|+..| ||..+.|++|.|+++
T Consensus 18 ~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 18 GGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp ECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred cCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 44567799999999998 599999999999999999999 999999999999985
No 54
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=75.25 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=47.2
Q ss_pred CCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhC-CceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLS-GRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLN-GR~FaGR~I~vEfs 65 (243)
.+++..+++++|.++|+ .|++||+|.++++|++||++|+ +-.+.|++|.|+|+
T Consensus 7 ~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 34577899999999997 6899999999999999999985 55799999999997
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.72 E-value=1.2e-08 Score=77.82 Aligned_cols=54 Identities=24% Similarity=0.427 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 28 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 28 TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 44567889999999997 6899999999999999999999999999999999864
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.72 E-value=2.3e-08 Score=74.69 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+++..+++++|.++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++
T Consensus 32 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 32 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34567889999999998 489999999999999999999999999999999996
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.4e-08 Score=74.66 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.+.++|++|++.|||..+.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 21 GNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp ESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred eCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34567899999999998 5999999999999999999999999999999999974
No 58
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.71 E-value=1.6e-08 Score=78.02 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|++.|. .|+.||+|.++++|.+|+++|||.-+.||+|.|++.
T Consensus 12 VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 12 LKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp EECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred EeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 345678899999999998 899999999999999999999999999999999986
No 59
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.3e-08 Score=76.84 Aligned_cols=53 Identities=23% Similarity=0.512 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+++..+++++|.++|+ .|++||+|.+.++|.+|+..|||..++|++|.|+|+
T Consensus 93 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 93 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp ESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 34567889999999998 578999999999999999999999999999999986
No 60
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.1e-08 Score=73.70 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 21 RNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp ESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34567899999999997 5799999999999999999999999999999999974
No 61
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.70 E-value=2.7e-08 Score=75.65 Aligned_cols=54 Identities=28% Similarity=0.490 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|++.|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 37 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 37 RPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 44567889999999998 6999999999999999999999999999999999974
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.2e-08 Score=75.07 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 13 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 13 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 344567889999999997 58999999999999999999999999999999999743
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=73.29 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++..
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp EESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 345567899999999998 68999999999999999999999999999999999743
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.70 E-value=2.2e-08 Score=77.99 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|+.||+|.++++|++||+.|||..|.|++|.|+++.
T Consensus 33 VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp EECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred EECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345678899999999996 5899999999999999999999999999999999973
No 65
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.4e-08 Score=74.59 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|. .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 25 ~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 25 GNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred eCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34567899999999998 6999999999999999999999999999999999974
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2e-08 Score=75.91 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.+.|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 35 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 35 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp ESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34467889999999998 5899999999999999999999999999999999963
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=1.3e-08 Score=76.96 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHH---hHcC----------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQ---EHFE----------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lq---ehFE----------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|. ++|. .|++||+|.++++|++||+.|||..|+|++|.|+++.
T Consensus 21 ~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 21 VGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp EEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred ECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 3456788999999 9998 2799999999999999999999999999999999964
No 68
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.69 E-value=2e-08 Score=76.82 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHhHcC------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+.++...+++++|+++|+ .|++||+|.++++|++||+.|||..|.|++|.+.+
T Consensus 21 V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 21 VSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp EEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 345678889999999998 29999999999999999999999999999955544
No 69
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.3e-08 Score=74.92 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 30 V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp EECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 344567899999999998 6999999999999999999999999999999999974
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.68 E-value=1.5e-08 Score=73.03 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|. .|++||+|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 13 V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 445677899999999997 4899999999999999999999999999999999974
No 71
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.68 E-value=2.3e-08 Score=76.78 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+++..+++++|.++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++
T Consensus 70 nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 70 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred eCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3467789999999998 689999999999999999999999999999999874
No 72
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3.9e-08 Score=72.21 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=47.6
Q ss_pred CCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 17 NPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 17 ~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
..+++++|.++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++..
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 23 EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4789999999998 69999999999999999999999999999999999743
No 73
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.68 E-value=1.8e-08 Score=76.15 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
++...+++++|+++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++
T Consensus 47 nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 47 HLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3467789999999998 589999999999999999999999999999999985
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=2.6e-08 Score=72.78 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=49.8
Q ss_pred CCCCCCCCCHHHHHhHcC--------------c--------ccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------V--------GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------~--------GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ . |++||+|.+.++|++|+..|||..|.|++|.|+++..
T Consensus 10 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 10 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 345567899999999997 2 6999999999999999999999999999999999743
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.68 E-value=2.8e-08 Score=73.56 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.++++|++|| .|||..+.|++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 21 GNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp ESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 44578899999999998 589999999999999999 999999999999999974
No 76
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.67 E-value=2.4e-08 Score=74.89 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=49.6
Q ss_pred CCCCCC-CCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNP-LDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~-~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++.. +++++|+++|+ .|++||+|.++++|++|++.|||..|.|++|.|+++.
T Consensus 33 ~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 33 GNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred eCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 445677 89999999998 6999999999999999999999999999999999974
No 77
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.8e-08 Score=72.86 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++||+ |||..|.|++|.|+++.
T Consensus 15 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 345577899999999998 5899999999999999998 99999999999999974
No 78
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.7e-08 Score=74.18 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=50.1
Q ss_pred CCCCCC-CCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGN-PLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~-~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++. .+++++|.++|. .|++||+|.+.++|++|+..|||..+.|++|.|+++.
T Consensus 15 V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 15 IGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp EESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred EeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 344566 899999999998 6999999999999999999999999999999999974
No 79
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.67 E-value=3.3e-08 Score=71.87 Aligned_cols=56 Identities=20% Similarity=0.483 Sum_probs=50.0
Q ss_pred CCCCCCCCCHHHHH----hHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQ----EHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lq----ehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|. ++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++..
T Consensus 13 V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 13 INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 34567788999999 8887 59999999999999999999999999999999999743
No 80
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.6e-08 Score=71.28 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|. .|++||+|.++++|++||. |||..+.|++|.|.++..
T Consensus 15 v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 345578899999999997 6899999999999999999 999999999999999743
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.6e-08 Score=74.06 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhC------CceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLS------GRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLN------GR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.+.++|++||..|| |..+.|++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 44577899999999997 6899999999999999999999 999999999999974
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.66 E-value=2.8e-08 Score=78.05 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|++.|+ .|++||+|.++++|++||..|||..|.|++|.|+++.
T Consensus 51 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 51 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 345677899999999998 5899999999999999999999999999999999974
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.66 E-value=2.5e-08 Score=77.32 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
++...+++++|.++|+ .|++||+|.+.++|++||+.|||..+.|++|.|+++...
T Consensus 49 nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 49 YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp SCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3467889999999998 679999999999999999999999999999999997543
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=3.8e-08 Score=72.53 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHH----hHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQ----EHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lq----ehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+ ++|+ .|++||+|.+.++|++||+.|||..+.|++|.|+++.
T Consensus 14 V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 14 VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34567789999999 9997 5899999999999999999999999999999999973
No 85
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.3e-08 Score=74.94 Aligned_cols=56 Identities=20% Similarity=0.383 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
.+++..+++++|.+.|. .|++||+|.+.++|++||..|||..+.|++|.|+++...
T Consensus 31 ~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 31 KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp ECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred eCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 34567899999999997 489999999999999999999999999999999997543
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.66 E-value=3.3e-08 Score=78.39 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|++||..|||..|.|++|.|+++.
T Consensus 45 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 45 GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34567889999999998 4899999999999999999999999999999999975
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.66 E-value=2.5e-08 Score=77.38 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCc--eeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR--~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.+.|+ .|++||+|.++++|.+|++.|||. ++.|++|.|+|+.-
T Consensus 26 V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 345678899999999998 799999999999999999999987 48999999999853
No 88
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=3.1e-08 Score=73.20 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aL-NGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|.++|+ .|++||+|.+.++|++||..| ||..|.|++|.|+++..
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 21 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred eCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 44567899999999997 379999999999999999999 99999999999999744
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.65 E-value=2.9e-08 Score=70.93 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+++..+++++|.++|+ .|++||+|.+.++|++|+ .|||..|.|++|.|+++.
T Consensus 13 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 13 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp SCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4567789999999998 689999999999999999 999999999999999974
No 90
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.65 E-value=3.4e-08 Score=75.55 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 14 AQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
++...+++++|.++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+++..
T Consensus 42 nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 42 NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 3467789999999997 48999999999999999999999999999999999754
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.2e-08 Score=75.59 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|+++|+ .|++||+|.++++|++||..||+ .|.|++|.|+++.
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 23 GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred eCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 44577899999999997 58999999999999999999999 9999999999974
No 92
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.65 E-value=3.6e-08 Score=77.47 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.+.++|.+|+..|||.+++|++|.|+|+.
T Consensus 105 ~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 105 KNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp ESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 34567789999999997 5899999999999999999999999999999999974
No 93
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.65 E-value=2.8e-08 Score=73.38 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCC---eeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAG---RPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG---R~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.+.++|++||..|||..+.| ++|.|+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 21 GMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 44577889999999998 4899999999999999999999999998 999999974
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.64 E-value=2.8e-08 Score=75.38 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|++.|||..|.|++|.|+++.
T Consensus 32 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 32 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp ECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 34567899999999998 5899999999999999999999999999999999973
No 95
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.64 E-value=3.7e-08 Score=75.59 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=50.4
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.+.|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 12 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 12 IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 445667899999999997 39999999999999999999999999999999999753
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.64 E-value=1.2e-08 Score=74.15 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|+++|+ .|++||+|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 7 ~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 7 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 34567889999999997 5789999999999999999999999999999999863
No 97
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=3.3e-08 Score=74.39 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|| .|||..|.|++|.|+++
T Consensus 31 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 31 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred eCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34567889999999998 589999999999999999 99999999999999986
No 98
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.63 E-value=2.7e-08 Score=73.26 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.+.++|++||+ |||..+.|++|.|+++.
T Consensus 23 ~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 23 GNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 44578899999999997 6899999999999999998 99999999999999974
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.62 E-value=3.5e-08 Score=73.03 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCcee---CCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~F---aGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|+++|||..+ .|++|.|+++.
T Consensus 19 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 19 GQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 44567899999999998 48999999999999999999999988 99999999974
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.62 E-value=3.8e-08 Score=73.96 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|. .|++||+|.+.++|.+|+..|||..|.|++|.|+++.
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 445678899999999997 5899999999999999999999999999999999974
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.6e-08 Score=73.31 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|+..|||..+.|++|.|+++
T Consensus 33 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 33 GNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred cCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 44567889999999997 699999999999999999999999999999999875
No 102
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=6.4e-08 Score=72.52 Aligned_cols=54 Identities=15% Similarity=0.373 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHhHcC---------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|+++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 21 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp ECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred cCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 44567889999999997 368999999999999999999999999999999997
Q ss_pred c
Q 026083 66 P 66 (243)
Q Consensus 66 p 66 (243)
.
T Consensus 101 ~ 101 (113)
T 2cpe_A 101 R 101 (113)
T ss_dssp S
T ss_pred C
Confidence 4
No 103
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=2.4e-08 Score=76.78 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.++...+++++|+++|. .|++||+|.++++|++||. |||..+.|++|.|+++..
T Consensus 31 ~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 31 KGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp ECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred eCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 45578899999999998 6899999999999999999 999999999999998754
No 104
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.61 E-value=5.2e-08 Score=80.69 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|.++|+ .|++||+|.+.++|++||+.|||..++|++|.|+++
T Consensus 109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45577899999999998 689999999999999999999999999999999885
No 105
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.61 E-value=4.5e-08 Score=71.96 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+.++...+++++|+++|+ .|++||+|.+.++|++|++.|||..|.|++|.|++
T Consensus 18 V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 97 (99)
T 2la6_A 18 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 97 (99)
T ss_dssp EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEe
Confidence 345678899999999997 36899999999999999999999999999999998
Q ss_pred c
Q 026083 65 S 65 (243)
Q Consensus 65 s 65 (243)
+
T Consensus 98 A 98 (99)
T 2la6_A 98 A 98 (99)
T ss_dssp C
T ss_pred c
Confidence 6
No 106
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.61 E-value=4.5e-08 Score=78.94 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.+.++|.+|+..|||..|+|++|.|+++.
T Consensus 131 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 131 ASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp ECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred eCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 34567789999999998 5889999999999999999999999999999999963
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.61 E-value=1.8e-08 Score=75.12 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCC-eeeEEEec
Q 026083 18 PLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAG-RPIIVDFS 65 (243)
Q Consensus 18 ~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG-R~I~vEfs 65 (243)
.+++++|.++|+ .|++||.|.+.++|++||+.|||..|.| ++|.|.++
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 778899999998 6999999999999999999999999999 99999986
No 108
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=7.7e-08 Score=71.27 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.++...+++++|.++|+ .|++||+|.++++|++|| .|||..|.|++|.|+++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 20 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred EeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 345577899999999998 479999999999999999 9999999999999999743
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.7e-08 Score=76.77 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCC--ceeCCeeeEEEeccCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSG--RFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNG--R~FaGR~I~vEfspVtdF 70 (243)
+.+++..+++++|++.|+ .|++||+|.++++|++|++.|++ ..+.|++|.|+|+.-...
T Consensus 36 VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 36 IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 345678899999999998 69999999999999999999984 689999999999854443
No 110
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.5e-08 Score=76.68 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCcee-----CCeeeEEEeccCCCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFY-----AGRPIIVDFSPVTDF 70 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~F-----aGR~I~vEfspVtdF 70 (243)
.++...+++++|+++|+ .|+.||+|.+.++|++|+++|||+.+ .|++|.+.|+--..|
T Consensus 33 g~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 33 GGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp CTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 34567889999999998 68999999999999999999999998 799999999744333
No 111
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=76.87 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 13 DAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
.++...+++++|+++|+ .|+.||+|.++++|++|| .|||..++||.|.|..+....|.
T Consensus 22 ~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~ 96 (109)
T 2dnn_A 22 HGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWV 96 (109)
T ss_dssp ECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHH
T ss_pred eCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchh
Confidence 45678899999999997 699999999999999999 79999999999999876544443
No 112
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=8.6e-08 Score=73.21 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHh--CCceeCCeeeEEEeccCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSL--SGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aL--NGR~FaGR~I~vEfspVt 68 (243)
.+++..+++++|++.|+ .|++||+|.++++|++|++.| ++..+.|++|.|+|+...
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 21 RKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 45678899999999998 699999999999999999987 578899999999998543
No 113
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.59 E-value=2.2e-07 Score=71.85 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|++.|+|..+.|++|.|+++..
T Consensus 9 ~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 9 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 34567789999999997 48999999999999999999999999999999999754
No 114
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.58 E-value=4.4e-08 Score=76.37 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+++..+++++|.+.|+ .|++||+|.+.++|.+|+..|||.+|+|++|.|+++
T Consensus 100 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 100 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34567889999999998 588999999999999999999999999999999985
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.58 E-value=5.1e-08 Score=76.89 Aligned_cols=55 Identities=24% Similarity=0.473 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|.++|+ .|++||+|.+.++|++||+.|||..+.|++|.|+++..
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 44577899999999997 68999999999999999999999999999999999743
No 116
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.58 E-value=3.5e-08 Score=68.78 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+++..+++++|+++|+ .|++||+|.++++|++|++ |||..+.|++|.|+++
T Consensus 6 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 6 GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred cCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 3456789999999997 5899999999999999997 9999999999999863
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.58 E-value=3.2e-08 Score=72.85 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 14 AQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+++..+++++|.++|+ .|++||+|.++++|++|+..|||..+.|++|.|+++..
T Consensus 7 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 7 NLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 3456789999999997 58999999999999999999999999999999999743
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=4.7e-08 Score=76.38 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEeccCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLN--GR~FaGR~I~vEfspVtd 69 (243)
.+.+++..+++++|++.|+ .|+.||+|.++++|++||+.|+ +..+.|++|.|+++....
T Consensus 20 fV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 3456678899999999998 6999999999999999999986 489999999999985433
No 119
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.56 E-value=7.1e-08 Score=74.68 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG--R~I~vEfs 65 (243)
.+++..+++++|.++|+ .|++||+|.+.++|.+|+..|||..|.| ++|.|.|+
T Consensus 95 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 95 TNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 34567789999999998 3889999999999999999999999988 99999884
No 120
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.55 E-value=2.4e-07 Score=75.05 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHhHcC--------------ccc-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEeccCCCC----
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------VGN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTDF---- 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------~GN-VYVkF~~ee~A~~Ai~aLNGR~FaG--R~I~vEfspVtdF---- 70 (243)
+.++.+.+++++|.+.|+ .|+ +||+|.++++|++|+++|||.-|.| ++|.++|+.....
T Consensus 33 V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~ 112 (130)
T 3zzy_A 33 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 112 (130)
T ss_dssp EESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCC
T ss_pred ECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEe
Confidence 345678899999999998 577 9999999999999999999999988 9999999865433
Q ss_pred CcccccccccC
Q 026083 71 REATCRQYEEN 81 (243)
Q Consensus 71 reA~Crq~~~g 81 (243)
....++.|..-
T Consensus 113 n~~~srDyt~~ 123 (130)
T 3zzy_A 113 NNDKSRDYTRP 123 (130)
T ss_dssp CSSSEEETTCT
T ss_pred cCCCcccCCCC
Confidence 44566666433
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=4.6e-08 Score=75.40 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCCC-CCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCc--eeCCeeeEEEecc
Q 026083 12 VDAQGN-PLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~-~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR--~FaGR~I~vEfsp 66 (243)
+.+++. .+++++|++.|+ .|+.||+|.++++|++||+.|||. .|.||+|.|+++.
T Consensus 20 V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345677 899999999998 689999999999999999999964 5999999999975
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.54 E-value=9.5e-08 Score=73.47 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
+.++...+++++|+++|+ .|++||+|.++++|++||+ |||..+.||+|.|.++...
T Consensus 22 V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 345678899999999996 5789999999999999999 9999999999999987533
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.54 E-value=3.2e-07 Score=70.49 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
+++..+++++|.+.|+ .|++||+|.++++|++|++.|||..+.|++|.+.++...
T Consensus 9 nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 9 YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 4567789999999998 389999999999999999999999999999999997543
No 124
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.54 E-value=1.4e-07 Score=73.49 Aligned_cols=56 Identities=16% Similarity=0.314 Sum_probs=49.2
Q ss_pred CCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 17 NPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 17 ~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
..+++++|+++|+ .|++||+|.+.++|++||..|||..|.|++|.|+++.-....+
T Consensus 47 l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 47 EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC--
T ss_pred CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCCC
Confidence 4689999999998 6999999999999999999999999999999999975444433
No 125
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.54 E-value=5.9e-08 Score=72.75 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=45.6
Q ss_pred CHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEEec-cCCCC
Q 026083 20 DPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFS-PVTDF 70 (243)
Q Consensus 20 ~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR-~I~vEfs-pVtdF 70 (243)
++++|.++|+ .|++||+|.+.++|++||..|||..|.|+ +|.|+++ ++..|
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKY 103 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhhh
Confidence 5789999998 49999999999999999999999999999 9999997 44444
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.53 E-value=7.5e-08 Score=79.64 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 14 AQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
++...+++++|+++|. .|++||+|.+.++|++||+.|||..|.|++|.|+++...
T Consensus 95 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 95 NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 3467789999999997 489999999999999999999999999999999998554
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=8.1e-08 Score=73.58 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCc--eeCCeeeEEEeccCCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPVTD 69 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR--~FaGR~I~vEfspVtd 69 (243)
.++...+++++|++.|+ .|+.||+|.++++|.+|++.|++. .+.|++|.|+|+....
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 21 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp ESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 45678899999999998 699999999999999999999764 5999999999985443
No 128
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.52 E-value=1.3e-07 Score=76.13 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.+.++|++||..|||..|.|++|.|+++.
T Consensus 78 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 78 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred eCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34567899999999998 4899999999999999999999999999999999963
No 129
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.52 E-value=6.9e-08 Score=73.44 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+...+++++|+++|+ .|++||+|.++++|++|| .|||..|.|++|.|+++.
T Consensus 44 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 44 VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 356789999999997 689999999999999999 899999999999999974
No 130
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.2e-07 Score=71.22 Aligned_cols=54 Identities=15% Similarity=0.404 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCcee--------CCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFY--------AGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~F--------aGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|+..|||..+ .|++|.|.|+.
T Consensus 31 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 31 SNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 34567789999999998 48999999999999999999999999 68889999864
No 131
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.2e-07 Score=70.91 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=52.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCCc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 72 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFre 72 (243)
+.+++..+++++|+++|. .|+.||+|.++++|++||.. ||..++||+|.|.++....+..
T Consensus 20 V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 20 LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 345678899999999998 58999999999999999998 9999999999999876555543
No 132
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=9.4e-08 Score=69.86 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCee----eEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRP----IIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~----I~vEfsp 66 (243)
+.+++..+++++|.+.|+ .|++||+|.+.++|++|+..|||..+.|++ |.|+++.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 455677899999999997 389999999999999999999999999999 9999864
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.51 E-value=7.5e-08 Score=75.85 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.+.++|.+|+..|||..+.|++|.|+++.
T Consensus 79 ~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 79 GNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp ESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 34567889999999997 6999999999999999999999999999999999973
No 134
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.50 E-value=1.4e-07 Score=80.11 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa-GR~I~vEfs 65 (243)
.++...+++++|.+.|+ .|++||+|.+.++|.+|+..|||..|. |++|.|+|+
T Consensus 213 ~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 213 TNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred eCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 34567789999999998 499999999999999999999999999 999999986
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.3e-08 Score=71.37 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCce-eCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRF-YAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~-FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|. .|++||+|.+.++|++||..|||.. +.|++|.|+++.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 445677899999999886 4789999999999999999999999 999999999973
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=76.56 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.+.|+ .|+.||+|.+.++|++||..|||..|.|++|.|+++.
T Consensus 61 gnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 61 GSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 34578899999999996 5789999999999999999999999999999999863
No 137
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.49 E-value=1.6e-07 Score=78.79 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCC-CCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQG-NPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~-~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++ ..+++++|.+.|. .|++||+|.++++|++||+.|||..+.|++|.|.++.
T Consensus 10 ~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 10 YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp ECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred eCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4455 6789999999998 5999999999999999999999999999999999974
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.49 E-value=3.4e-08 Score=70.37 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=39.9
Q ss_pred CHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCe-eeEE
Q 026083 20 DPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIV 62 (243)
Q Consensus 20 ~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR-~I~v 62 (243)
++++|++.|+ .|++||+|.+.++|++|+..|||..|.|+ +|.|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 5689999997 59999999999999999999999999999 8875
No 139
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.7e-07 Score=71.15 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|+++|+ .|++||+|.++++|++||.. ||..|.|++|.|+++.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 20 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 345678899999999997 58999999999999999987 9999999999999874
No 140
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=9.2e-08 Score=72.15 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|+.||+|.++++|++|| .||+..+.||+|.|.++..
T Consensus 20 V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp EESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 455678899999999998 689999999999999999 5899999999999988643
No 141
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=9.1e-08 Score=70.83 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=49.2
Q ss_pred CCCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+.+++..+++++|+++|. .|++||+|.++++|++||.. ||..|.|++|.|+++.
T Consensus 20 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 3455678899999999997 48999999999999999999 9999999999999863
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=73.72 Aligned_cols=54 Identities=24% Similarity=0.513 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHhHcC------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||.|.+.++|.+||..|||..|.|++|.|+++.
T Consensus 51 ~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 51 KNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp EEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44567899999999997 3689999999999999999999999999999999974
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.48 E-value=1.5e-07 Score=72.27 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCee--eEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRP--IIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~--I~vEfs 65 (243)
.+++..+++++|.+.|+ .|++||+|.+.++|.+|++.|||..|.|+. |.|.|+
T Consensus 94 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 94 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 34467789999999998 478999999999999999999999999975 877764
No 144
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=75.22 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHH----hHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQ----EHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lq----ehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|+ +.|+ .|++||+|.+.++|.+|+..|||..|.|++|.|+++..
T Consensus 35 ~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 35 TNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 3456678888765 5676 69999999999999999999999999999999999743
No 145
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=70.31 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.++...+++++|.++|+ .|++||+|.+.++|++|+ .|||..|.|++|.|+++.
T Consensus 24 V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 24 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp ESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 345577899999999997 479999999999999999 999999999999999864
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=68.41 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 14 AQGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
+++..+++++|.++|. .|.+||+|.+.++|++|+..|||..+.|++|.|+++...
T Consensus 22 nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 22 NIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred cCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3467889999999997 233899999999999999999999999999999997543
No 147
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1e-07 Score=72.41 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++||. |||..|.|++|.|.+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445678899999999997 5999999999999999998 9999999999999874
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.4e-07 Score=74.20 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=47.8
Q ss_pred CCCCCC-CCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEecc
Q 026083 13 DAQGNP-LDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~-~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLN--GR~FaGR~I~vEfsp 66 (243)
.+++.. +++++|.+.|+ .|++||+|.++++|++||+.|| +..|.||+|.|+++.
T Consensus 31 ~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 31 SNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp ESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred eCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 345676 89999999998 6999999999999999999986 567999999999974
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.46 E-value=7.6e-08 Score=75.96 Aligned_cols=55 Identities=24% Similarity=0.473 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.+++..+++++|.++|+ .|++||+|.+.++|++||..|||..+.|++|.|+++..
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 44567889999999998 57999999999999999999999999999999999743
No 150
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.46 E-value=3.2e-08 Score=71.23 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
++..+++++|.++|. .|++||+|.+.+ |++|+..|||..+.|++|.|+++...
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 456789999999997 689999999999 99999999999999999999997543
No 151
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.46 E-value=2.8e-07 Score=65.86 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+.+++..+++++|+++|+ .|++||+|.+.++|++|++ +++..++|++|.|+++
T Consensus 16 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345677899999999998 6899999999999999995 5888999999999863
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.46 E-value=1.3e-07 Score=75.31 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+++..+++++|.++|+ .|++||+|.+.++|++|+..|||.+|+|++|.|+++.
T Consensus 121 nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 121 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3456789999999997 5789999999999999999999999999999999973
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.45 E-value=4.3e-07 Score=76.35 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEeccCCC----C
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTD----F 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG--R~I~vEfspVtd----F 70 (243)
+.++...+++++|++.|+ .|+.||+|.++++|++|+++|||..|.| ++|.|+|+...+ +
T Consensus 51 VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~ 130 (164)
T 1sjr_A 51 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 130 (164)
T ss_dssp ECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCC
T ss_pred EeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccc
Confidence 355678899999999998 4789999999999999999999999955 999999985443 2
Q ss_pred Ccccccccc
Q 026083 71 REATCRQYE 79 (243)
Q Consensus 71 reA~Crq~~ 79 (243)
....++.|.
T Consensus 131 nn~rsrDyt 139 (164)
T 1sjr_A 131 NNDKSRDYT 139 (164)
T ss_dssp CSSSEEESS
T ss_pred cCCCCcccc
Confidence 334445543
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.2e-07 Score=70.01 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
++...+++++|.++|. .|++||+|.+.++|++||.. ||..|.|++|.|+++.
T Consensus 34 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 34 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp CCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4567899999999998 58999999999999999998 9999999999999963
No 155
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=1.3e-07 Score=65.79 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+++..+++++|+++|+ .|++||+|.++++|++|+..|+ ..+.|++|.|+++
T Consensus 7 nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 7 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 3456789999999998 5899999999999999999999 9999999999874
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.42 E-value=3.4e-07 Score=73.10 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHhHcC-------------ccc-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEEeccCC
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVT 68 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GN-VYVkF~~ee~A~~Ai~aLNGR~FaG--R~I~vEfspVt 68 (243)
.++...+++++|.+.|+ .|+ +||+|.++++|.+|+++|||..+.| ++|.|+|+...
T Consensus 31 ~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 31 QNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp ESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred cCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 45678899999999998 486 9999999999999999999999987 69999997433
No 157
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=1.7e-07 Score=73.34 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=49.0
Q ss_pred CCCCCCCCCHHH----HHhHcC----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRK----IQEHFE----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~----lqehFE----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.++.+.+++++ |.+.|+ .|+.||.|.++++|++|++.|||..+.||+|.+.|++-
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 566788899887 456776 57889999999999999999999999999999999854
No 158
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=5.9e-08 Score=69.13 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+.+++..+++++|.++|+ .|++||+|.++++|++|+..|||..+.|+.|.+..
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 344567889999999998 58999999999999999999999999999997754
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.4e-07 Score=71.15 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 15 QGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
++..+++++|.++|+ .|++||+|.++++|.+|+..|||..+.|++|.++++.
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 456789999999998 4899999999999999999999999999999999974
No 160
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.40 E-value=3.2e-07 Score=65.14 Aligned_cols=51 Identities=12% Similarity=0.361 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHhHcC------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 13 DAQGNPLDPRKIQEHFE------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
.+++..+++++|+++|. .|++||+|.++++|++|+ .|||..|.|++|.|+.
T Consensus 12 ~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 12 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred eCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 34567789999998885 478999999999999999 9999999999999873
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.40 E-value=3.1e-07 Score=71.31 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeC---CeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa---GR~I~vEfs 65 (243)
+++..+++++|++.|+ .|++||+|.+.++|.+|+++|||..+. |++|.|.|+
T Consensus 102 nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 102 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 4567889999999998 578999999999999999999998665 499999985
No 162
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=2.4e-07 Score=68.76 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLN--GR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.++|. .|++||+|.+.++|++|+..|| +..+.|++|.|+++.
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 344567889999999987 5899999999999999999996 589999999999973
No 163
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.39 E-value=2.1e-07 Score=69.87 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
.++...+++++|.++|. .|++||+|.++++|++||. |||.+++||+|.|.++..
T Consensus 17 ~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 17 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp ECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred eCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 45678899999999997 5789999999999999999 999999999999988643
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.38 E-value=1.6e-07 Score=75.81 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHhHcC-----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 11 GVDAQGNPLDPRKIQEHFE-----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE-----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
.+.++...+++++|+++|+ .|+.||+|.++++|++|| .||+..+.||+|.|.++....
T Consensus 50 fV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 4566788999999999998 689999999999999999 899999999999998875543
No 165
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.38 E-value=2.8e-07 Score=73.98 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|+++|+ .|+.||+|.++++|++||+ |||..++||+|.|.++..
T Consensus 49 VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 49 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 345678899999999997 4789999999999999999 999999999999998743
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.37 E-value=5e-07 Score=76.73 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCCCC-CCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 14 AQGNP-LDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 14 ~~~~~-~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
+++.. +++++|.+.|+ .|++||+|.+.++|.+|+..|||.+|+|++|.|.|+....
T Consensus 191 nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 191 RLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp CCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred cCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 44566 48999999998 5899999999999999999999999999999999985433
No 167
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.37 E-value=5.9e-07 Score=67.97 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|++||+|.++++|++||..|+ ..|.|++|.|+++.
T Consensus 31 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 31 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 102 (109)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEcc
Confidence 34567899999999998 5899999999999999999874 99999999999964
No 168
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=73.12 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCc----eeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGR----FYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR----~FaGR~I~vEfsp 66 (243)
.++...+++++|.++|+ .|+.||+|.+. +|.+||..|||. .+.|++|.|++..
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAK 106 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECC
Confidence 45577889999999998 58999999999 999999999999 9999999999974
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.36 E-value=3e-07 Score=71.24 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 15 QGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
++..+++++|.+.|+ .|++||+|.+.++|.+|++ |+|..|+|++|.|.++.
T Consensus 95 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 95 IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 457789999999997 4899999999999999998 89999999999999863
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.2e-07 Score=66.32 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHhHcC-cc-------------cEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-VG-------------NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-~G-------------NVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .| ++||+|.++++|++||. |||..|.|++|.|++...
T Consensus 13 V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 13 VSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 345678899999999998 22 89999999999999999 999999999999987643
No 171
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.35 E-value=3.2e-07 Score=73.84 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa-GR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.+.++|.+|+..|||..++ |++|.|+|+.
T Consensus 126 ~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 126 SNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred eCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 34567789999999996 588999999999999999999999999 9999999963
No 172
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.32 E-value=3.4e-07 Score=63.56 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+++..+++++|+++|+ .|++||+|.++++|++|++. ++..+.|++|.|.++
T Consensus 6 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 4567789999999997 68999999999999999985 999999999998864
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.32 E-value=6.5e-07 Score=70.26 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=48.6
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.+.|. .|++||+|.++++|++|+ .|||..+.|++|.|+++..
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 345678889999998887 699999999999999999 5999999999999999753
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.30 E-value=6.8e-07 Score=72.00 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.++|+ .|++||+|.++++|.+|+..|||..+.|++|.|.++.
T Consensus 34 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 34 GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred ECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34567799999999998 6899999999999999999999999999999998754
No 175
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.2e-06 Score=64.60 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.++...+++++|.++|. .|++||+|.+.++|++||. ++..+.|++|.|+++.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 21 LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred EcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 34577899999999998 5799999999999999998 4789999999999974
No 176
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.29 E-value=3e-07 Score=78.86 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
|.++...+++++|+++|. .|+.||+|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 73 VgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 73 IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp EESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 345678899999999996 5789999999999999999999999999999999863
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.28 E-value=5.4e-07 Score=75.37 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=49.3
Q ss_pred CCCCC-CCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGN-PLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~-~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++. .+++++|.+.|+ .|++||+|.++++|++|++.|||..|.|++|.|+++.
T Consensus 40 ~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 40 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp ESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred eCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 34566 789999999998 5999999999999999999999999999999999974
No 178
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.28 E-value=1.1e-06 Score=69.87 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.+.++|.+|+.. +|..|+|++|.|.++.
T Consensus 110 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp ECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 34567799999999998 57899999999999999987 8999999999999963
No 179
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.27 E-value=1.4e-06 Score=72.08 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+.+++..+++++|.++|+ .|++||+|.++++|++||..|||..+.|++|.+.++..
T Consensus 20 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 20 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 445678899999999998 68999999999999999999999999999999998753
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.26 E-value=5.7e-07 Score=72.32 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=49.1
Q ss_pred CCCC-CCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026083 14 AQGN-PLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 67 (243)
Q Consensus 14 ~~~~-~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspV 67 (243)
+++. .+++++|.+.|+ .|++||+|.++++|++|+..|||..+.|++|.|+++..
T Consensus 10 nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 10 NLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 4556 789999999997 59999999999999999999999999999999999753
No 181
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.59 E-value=1.1e-07 Score=71.85 Aligned_cols=56 Identities=25% Similarity=0.468 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHhHcC---------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 11 GVDAQGNPLDPRKIQEHFE---------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 11 ~~d~~~~~~~~e~lqehFE---------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
.+.++...+++++|.++|+ .|++||+|.+.++|++|+..|||..|.|++|.|+
T Consensus 11 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (116)
T 2lcw_A 11 FVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVS 90 (116)
Confidence 3445567788888888886 3789999999999999999999999999999999
Q ss_pred ecc
Q 026083 64 FSP 66 (243)
Q Consensus 64 fsp 66 (243)
++.
T Consensus 91 ~a~ 93 (116)
T 2lcw_A 91 FAT 93 (116)
Confidence 964
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.23 E-value=1.5e-06 Score=72.58 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHhHcC---------------cccEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEEecc
Q 026083 14 AQGNPLDPRKIQEHFE---------------VGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSP 66 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE---------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa-GR~I~vEfsp 66 (243)
++...+++++|.+.|+ .|++||+|.+.++|.+|+..|||..++ |++|.|+|+.
T Consensus 158 nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 158 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 4467789999999997 588999999999999999999999999 9999999963
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.22 E-value=2.1e-06 Score=72.91 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCCCCCCCCHHHHHhHcC------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|.+.|+ .|++||+|.++++|++|+..|||..+.|++|.+++++
T Consensus 27 V~nLp~~~te~~l~~~F~~~Gi~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 27 IRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp EECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHHcCCEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 345677899999999998 6999999999999999999999999999999999976
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.21 E-value=2.1e-06 Score=72.83 Aligned_cols=56 Identities=20% Similarity=0.459 Sum_probs=49.8
Q ss_pred CCCCCCCCCCHHHHH----hHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 11 GVDAQGNPLDPRKIQ----EHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 11 ~~d~~~~~~~~e~lq----ehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+.++...+++++|+ ++|. .|++||+|.+.++|++||..|||..+.|++|.|+++.
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 345667889999966 8887 5999999999999999999999999999999999973
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.20 E-value=2.1e-06 Score=73.26 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 28 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 28 GNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp ESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45678899999999998 7999999999999999999999999999999999874
No 186
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-06 Score=66.59 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 16 GNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 16 ~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
...+++++|+++|+ .|+.||+|.+.++|++||+.+++ +.|++|.|++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 35689999999998 68999999999999999999877 689999999864
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.20 E-value=1.2e-06 Score=69.57 Aligned_cols=53 Identities=11% Similarity=0.343 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHhHcC------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|+ .|||..|.|++|.|+++.
T Consensus 10 ~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 10 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 34567789999999985 578999999999999999 999999999999999863
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.19 E-value=1.9e-06 Score=73.46 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=46.3
Q ss_pred CCCC-CCHHHHHhHcC--------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 15 QGNP-LDPRKIQEHFE--------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 15 ~~~~-~~~e~lqehFE--------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
++.. +++++|.++|+ .|++||+|.+.++|.+|+ .|||.+|+|++|.|.|+.
T Consensus 218 lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 218 LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 3566 89999999998 277999999999999999 999999999999999963
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.19 E-value=2.2e-06 Score=66.62 Aligned_cols=53 Identities=11% Similarity=0.343 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHhHcC------------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|+ .|||..+.|++|.+++..
T Consensus 10 ~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 10 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred cCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 34567789999999885 478999999999999999 999999999999999853
No 190
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.16 E-value=4.6e-07 Score=72.27 Aligned_cols=54 Identities=26% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|+.||+|.++++|++||+. ++..++||+|.|..+.
T Consensus 47 VgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 47 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp EECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred EeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 345688999999999997 58999999999999999985 7799999999998764
No 191
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=9.3e-07 Score=69.87 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHhHcC----------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 12 VDAQGNPLDPRKIQEHFE----------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE----------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
+.++.+.+++++|+++|+ .|+.||+|.++++|++||+. |+..+.||.|.|..+...
T Consensus 28 V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 28 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 456788999999999996 47899999999999999986 999999999988776433
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.5e-06 Score=63.87 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCC
Q 026083 12 VDAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 70 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdF 70 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++||++|++ ++|+.|.+..++...-
T Consensus 13 VgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~~~~ 90 (114)
T 2dnl_A 13 VGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSPTIKD 90 (114)
T ss_dssp EECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCSSSCS
T ss_pred EcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCCCcCC
Confidence 445678899999999998 38999999999999999999964 7888888877665444
Q ss_pred Cccccc
Q 026083 71 REATCR 76 (243)
Q Consensus 71 reA~Cr 76 (243)
+....+
T Consensus 91 ~~~~v~ 96 (114)
T 2dnl_A 91 KPVQIR 96 (114)
T ss_dssp EEEEEE
T ss_pred Ceeecc
Confidence 333333
No 193
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.11 E-value=3.7e-06 Score=66.68 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
+.+++..+++++|++.|+ .|++||+|.++++|++||.. +|..+.|++|.+.++.
T Consensus 18 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 18 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 345677899999999998 57999999999999999976 9999999999999964
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.07 E-value=4.6e-06 Score=69.63 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.+++..+++++|+++|+ .|++||+|.++++|++|+..++. .|+|++|.|.+.
T Consensus 115 ~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 115 KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp ECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred cCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 44567789999999998 59999999999999999988765 899999999864
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.06 E-value=1.7e-06 Score=76.26 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=44.5
Q ss_pred CHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCcee------------CCeeeEEEeccC
Q 026083 20 DPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFY------------AGRPIIVDFSPV 67 (243)
Q Consensus 20 ~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~F------------aGR~I~vEfspV 67 (243)
++++|.++|+ .|++||+|.+.++|+.|+.+|+|..+ .|++|.|.++..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 5899999997 79999999999999999999999999 899999999743
No 196
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.97 E-value=3.3e-06 Score=62.04 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
.++...+++++|.++|+ .|++||+|.+.++|++|+. +|..++|++|.|..+
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 15 GGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34567889999999998 4899999999999999998 999999999998886
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.95 E-value=1e-05 Score=68.85 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|. .|++||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 123 ~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 123 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34567789999999997 5789999999999999999999999999999999974
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.92 E-value=1.1e-05 Score=68.80 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHh-CCceeC---CeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSL-SGRFYA---GRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aL-NGR~Fa---GR~I~vEfsp 66 (243)
.+++..+++++|.++|. .|++||+|.+.++|.+|+..| +|.++. |++|.|+++.
T Consensus 102 ~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 102 KNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 34567789999999998 689999999999999999999 667776 9999999865
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.80 E-value=2e-05 Score=72.70 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=63.5
Q ss_pred CCCCCHHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCcee---CCe--eeEEEeccCCCCCcccccc
Q 026083 16 GNPLDPRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFY---AGR--PIIVDFSPVTDFREATCRQ 77 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~F---aGR--~I~vEfspVtdFreA~Crq 77 (243)
...+++++|++.|+ +|+.||+|.+.++|++||++|||..+ .|+ +|.+.|+.-.. |..
T Consensus 29 ~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~-----~~~ 103 (345)
T 3tht_A 29 GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ-----WKE 103 (345)
T ss_dssp GGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEE-----EEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeeccc-----ccc
Confidence 46799999999998 79999999999999999999999988 355 78888863111 233
Q ss_pred cccCCCCCCCCCccCccccCCHHHHHHHhhcc
Q 026083 78 YEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 109 (243)
Q Consensus 78 ~~~g~C~RGg~CNFmHv~~~sr~l~~~Lf~~~ 109 (243)
+....-+.| =+++.--++.+-...|....
T Consensus 104 ~~~~~lp~G---l~~~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 104 LRPQALPPG---LMVVEEIISSEEEKMLLESV 132 (345)
T ss_dssp EECCSCCTT---EEEETTCSCHHHHHHHHTTC
T ss_pred cccccCCCc---eEEEcCcCCHHHHHHHHHhc
Confidence 333455655 34444457777777777654
No 200
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.79 E-value=2.7e-05 Score=60.16 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|+.. +..+.|++|.+.++.
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 45567889999999998 48999999999999999985 679999999988764
No 201
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.78 E-value=2.4e-05 Score=60.51 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeC---CeeeEEEecc
Q 026083 13 DAQGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFSP 66 (243)
Q Consensus 13 d~~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~Fa---GR~I~vEfsp 66 (243)
.+++..+++++|.+.|+ .|++||+|.++++|++|++.|||..+. +++|.+....
T Consensus 9 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 9 GQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 34567789999999997 268999999999999999999997765 6778777753
No 202
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.73 E-value=5.4e-05 Score=55.39 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRFY--AGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~F--aGR~I~vEfsp 66 (243)
+.++...+++++|+++|+ .|+.||+|.++++|+ +|+|..+ .|++|.|.++.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 455678899999999998 599999999999998 3567665 49999998863
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.70 E-value=2.1e-05 Score=65.87 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHhHcC-------------------cccEEEEeCCHHHHHHHHHHhCCceeCCe----eeEEEe
Q 026083 14 AQGNPLDPRKIQEHFE-------------------VGNVYVQFREEEQAARALKSLSGRFYAGR----PIIVDF 64 (243)
Q Consensus 14 ~~~~~~~~e~lqehFE-------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR----~I~vEf 64 (243)
+++..+++++|+++|+ .|+.||+|.+.++|.+||..|||..+.|+ ||++-|
T Consensus 130 NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 130 NAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 3467789999999997 28999999999999999999999999998 566554
No 204
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=3.6e-05 Score=55.16 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHhHcC--------------cccEEEEeCCHHHHHHHHHHhCCce--eCCeeeEEEecc
Q 026083 12 VDAQGNPLDPRKIQEHFE--------------VGNVYVQFREEEQAARALKSLSGRF--YAGRPIIVDFSP 66 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE--------------~GNVYVkF~~ee~A~~Ai~aLNGR~--FaGR~I~vEfsp 66 (243)
+.+++..+++++|+++|+ .|++||+|.++++|++| ++.- +.|++|.+.++.
T Consensus 10 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAE 76 (88)
T ss_dssp EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecC
Confidence 344567899999999998 59999999999999754 4444 499999998864
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.59 E-value=5.8e-05 Score=62.45 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=44.5
Q ss_pred CCCCCHHHHHhHcC-------------------cccEEEEeCC----HHH----HHHHHH--HhCCceeCCeeeEEEecc
Q 026083 16 GNPLDPRKIQEHFE-------------------VGNVYVQFRE----EEQ----AARALK--SLSGRFYAGRPIIVDFSP 66 (243)
Q Consensus 16 ~~~~~~e~lqehFE-------------------~GNVYVkF~~----ee~----A~~Ai~--aLNGR~FaGR~I~vEfsp 66 (243)
+..+++.+|++.|. .|+.||+|.+ +++ |.+|+. .|||..++|++|.|+|-+
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 67789999999997 8999999996 333 889999 899999999999999865
Q ss_pred C
Q 026083 67 V 67 (243)
Q Consensus 67 V 67 (243)
-
T Consensus 95 ~ 95 (136)
T 2j8a_A 95 H 95 (136)
T ss_dssp T
T ss_pred c
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00033 Score=54.21 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=40.0
Q ss_pred HHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCCCC
Q 026083 22 RKIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 71 (243)
Q Consensus 22 e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtdFr 71 (243)
.+|.+.|. .+..||.|.+.++|.+||+ |||-.+.||.|+|.+.. ++|-
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt-~dW~ 88 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS-PSGP 88 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC-CSSC
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC-CCcc
Confidence 45677776 5668999999999999998 99999999999999953 3453
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.00066 Score=53.01 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHHhHcC-----------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 23 KIQEHFE-----------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 23 ~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+|.+.|. .+-.||.|.+.++|.+||+ |||..+.||.|.|.+
T Consensus 40 ~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 40 ELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 4666666 4458999999999999998 999999999999987
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.98 E-value=0.015 Score=46.53 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCC-CCHHHHHhHcC-------------cccEEEEeCC-HHHHHHHHHHhC--CceeCCeeeEEEec
Q 026083 16 GNP-LDPRKIQEHFE-------------VGNVYVQFRE-EEQAARALKSLS--GRFYAGRPIIVDFS 65 (243)
Q Consensus 16 ~~~-~~~e~lqehFE-------------~GNVYVkF~~-ee~A~~Ai~aLN--GR~FaGR~I~vEfs 65 (243)
... ++.++|.+.|. .-..||+|.+ +++|++|+.+|| |.-+.|..|++++.
T Consensus 27 ~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 27 LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 444 88999999998 3457999999 899999999994 88889988888874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.013 Score=47.38 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHhHcC------------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 12 VDAQGNPLDPRKIQEHFE------------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 12 ~d~~~~~~~~e~lqehFE------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
+-+.+-.+++..|+...+ -|=+.|+|.++..|.+|.-+|+|--|+||+|.|--
T Consensus 26 L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 26 LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 334455577888766554 56789999999999999999999999999999853
No 210
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.54 E-value=0.011 Score=46.13 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=33.8
Q ss_pred cccEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEEecc
Q 026083 30 VGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSP 66 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aL-NGR~FaGR~I~vEfsp 66 (243)
.|..+|+|.+.++|++|+..| ||..++| +|.+.++.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 689999999999999999999 9999999 99999864
No 211
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=92.37 E-value=0.084 Score=37.62 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=27.9
Q ss_pred ccCCCCCccccccc-ccCCCCCCCCCccCccccC
Q 026083 65 SPVTDFREATCRQY-EENTCNRGGYCNFMHLKRI 97 (243)
Q Consensus 65 spVtdFreA~Crq~-~~g~C~RGg~CNFmHv~~~ 97 (243)
.+...|+..+|+.| ..|.|..|..|.|.|....
T Consensus 5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred CCCCCccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 35567899999999 5899999999999998753
No 212
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.32 E-value=0.052 Score=39.66 Aligned_cols=30 Identities=20% Similarity=0.690 Sum_probs=25.4
Q ss_pred CCCCcccccccccCCCCCCCCCccCccccC
Q 026083 68 TDFREATCRQYEENTCNRGGYCNFMHLKRI 97 (243)
Q Consensus 68 tdFreA~Crq~~~g~C~RGg~CNFmHv~~~ 97 (243)
...+..+|+-|..|.|.+|..|.|.|-..+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 445778999999999999999999997654
No 213
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=90.19 E-value=0.076 Score=38.15 Aligned_cols=24 Identities=42% Similarity=0.976 Sum_probs=21.1
Q ss_pred cccccccccCCCCCCC-CCccCccc
Q 026083 72 EATCRQYEENTCNRGG-YCNFMHLK 95 (243)
Q Consensus 72 eA~Crq~~~g~C~RGg-~CNFmHv~ 95 (243)
.++|+.|..|.|.+|. .|.|.|..
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCc
Confidence 4689999999999998 59999965
No 214
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=89.97 E-value=0.09 Score=38.24 Aligned_cols=32 Identities=22% Similarity=0.649 Sum_probs=25.5
Q ss_pred ccCCCCCcccccccccCCCCCCCCCccCcccc
Q 026083 65 SPVTDFREATCRQYEENTCNRGGYCNFMHLKR 96 (243)
Q Consensus 65 spVtdFreA~Crq~~~g~C~RGg~CNFmHv~~ 96 (243)
+........+|+-|..|.|.+|..|.|.|-..
T Consensus 9 ~~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CSSSCCCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred ccCCCCcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 34455677889988889999999999999754
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.78 E-value=0.37 Score=38.00 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=35.5
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCCC
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 69 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVtd 69 (243)
-.-|-|-|.++++|.+|-..|++.-|.|+.|.|-|...++
T Consensus 46 FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 46 FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 4567899999999999999999999999999999976443
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=89.62 E-value=0.32 Score=37.69 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=22.1
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCc
Q 026083 30 VGNVYVQFREEEQAARALKSLSGR 53 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR 53 (243)
.|+.||+|.+.++|++|+..+++.
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhccc
Confidence 699999999999999999998864
No 217
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=88.47 E-value=0.13 Score=36.90 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=23.5
Q ss_pred CCCCcccccccccCCCCCCCCCccCccc
Q 026083 68 TDFREATCRQYEENTCNRGGYCNFMHLK 95 (243)
Q Consensus 68 tdFreA~Crq~~~g~C~RGg~CNFmHv~ 95 (243)
..-+..+|..|..|.|.+| .|-|+|+.
T Consensus 38 ~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 38 NDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred cCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 4556789999999999999 99999974
No 218
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.31 E-value=0.21 Score=38.50 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=27.5
Q ss_pred CCCCcccccccccCCCCCCCCCccCccccCCHHHHHHHhh
Q 026083 68 TDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 107 (243)
Q Consensus 68 tdFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~~Lf~ 107 (243)
..-+..+|..|..|.|.++ .|-|+|+. ..|+..|--
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~~---~~l~~~~~~ 87 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHPP---AHLQAKIKA 87 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCCC---HHHHHHHHH
T ss_pred cCCccccchhhccCCCCCC-CcCccCCh---HHHHHHHHH
Confidence 3456789999999999999 89999964 456655533
No 219
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=88.17 E-value=0.22 Score=37.41 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=22.7
Q ss_pred CcccccccccCCCCCCC-CCccCcccc
Q 026083 71 REATCRQYEENTCNRGG-YCNFMHLKR 96 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg-~CNFmHv~~ 96 (243)
+.++|+.|..|.|.||. .|.|.|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 55789999999999995 999999864
No 220
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=88.03 E-value=0.3 Score=37.39 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=15.8
Q ss_pred CCcccccccccCCCCCCCCCccCcc
Q 026083 70 FREATCRQYEENTCNRGGYCNFMHL 94 (243)
Q Consensus 70 FreA~Crq~~~g~C~RGg~CNFmHv 94 (243)
.+..+|+-|..|.|.+|..|.|+|.
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 3455666666666666666666666
No 221
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.83 E-value=0.16 Score=37.60 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=26.0
Q ss_pred cCCCCCcccccccccCCCCCCCCCccCccccCCHHHHH
Q 026083 66 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 103 (243)
Q Consensus 66 pVtdFreA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~ 103 (243)
|...| .+|..|..|.|+.|..|.|-|=. .+|+.
T Consensus 16 P~~k~--~LC~~~~~G~C~~G~~C~FAHG~---~ELr~ 48 (69)
T 2d9m_A 16 PTGYF--SICDRYMNGTCPEGNSCKFAHGN---AELHE 48 (69)
T ss_dssp CCSCC--SBCHHHHHSCCSSCSSCSSBSSH---HHHHH
T ss_pred CCCCc--ccCcccCcCCCCCCCccCCcCCH---HHHhh
Confidence 33455 78999999999999999999965 44544
No 222
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=85.90 E-value=0.26 Score=37.55 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=21.4
Q ss_pred CcccccccccCCCCCCC-CCccCcccc
Q 026083 71 REATCRQYEENTCNRGG-YCNFMHLKR 96 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg-~CNFmHv~~ 96 (243)
+.++|+.|..|.|.||. .|.|.|...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 35789999889999996 899999754
No 223
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=83.75 E-value=0.25 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=33.1
Q ss_pred hCCceeCCeeeEEEeccC-CCCCccccccccc-CCCCCCCCCccCccccCCH
Q 026083 50 LSGRFYAGRPIIVDFSPV-TDFREATCRQYEE-NTCNRGGYCNFMHLKRISR 99 (243)
Q Consensus 50 LNGR~FaGR~I~vEfspV-tdFreA~Crq~~~-g~C~RGg~CNFmHv~~~sr 99 (243)
|.|.--.|.. |.|+.. ..-+..+|.-|.. |.|.. ..|.|+|+.+.++
T Consensus 23 l~G~C~~G~~--C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 23 LRGLCKKGDQ--CEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp HTTCCCCGGG--SSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred hcCCCCCCCC--CCCccccccccCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 4455555544 667643 3345678999998 99999 9999999987653
No 224
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=83.11 E-value=0.27 Score=43.12 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=26.8
Q ss_pred ccccccccCCCCCCCCCccCccccCCHHHH
Q 026083 73 ATCRQYEENTCNRGGYCNFMHLKRISRDLR 102 (243)
Q Consensus 73 A~Crq~~~g~C~RGg~CNFmHv~~~sr~l~ 102 (243)
-+|--|..|.|.+|..|.|+|-++...++.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d~~ 100 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDEEDIG 100 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCHHHHH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCccchh
Confidence 489999999999999999999988877765
No 225
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=82.92 E-value=1.1 Score=35.96 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=34.0
Q ss_pred HHHHHhHcC-------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeccCC
Q 026083 21 PRKIQEHFE-------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 68 (243)
Q Consensus 21 ~e~lqehFE-------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfspVt 68 (243)
...|-.||. ...|+|+|.+..+|++||. .||..++|-.+ +-..|++
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~m-IGV~p~~ 95 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIM-IGVKPCI 95 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEE-CEEEECC
T ss_pred HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEE-EEEEECC
Confidence 345788885 4568999999999999995 59999986443 3334444
No 226
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=82.48 E-value=0.26 Score=35.06 Aligned_cols=27 Identities=22% Similarity=0.830 Sum_probs=0.0
Q ss_pred CCCcccccccc-cCCCCCCCCCccCccc
Q 026083 69 DFREATCRQYE-ENTCNRGGYCNFMHLK 95 (243)
Q Consensus 69 dFreA~Crq~~-~g~C~RGg~CNFmHv~ 95 (243)
.+...+|..|. .|.|+.|..|.|+|..
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp ----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 45567898775 7999999999999975
No 227
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.31 E-value=0.15 Score=39.23 Aligned_cols=27 Identities=30% Similarity=0.791 Sum_probs=23.5
Q ss_pred CcccccccccCCCCCCC-CCccCccccC
Q 026083 71 REATCRQYEENTCNRGG-YCNFMHLKRI 97 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg-~CNFmHv~~~ 97 (243)
+..+|+.|..|.|.+|. .|.|.|....
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 44789999999999998 8999999754
No 228
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=82.01 E-value=0.67 Score=34.72 Aligned_cols=31 Identities=29% Similarity=0.650 Sum_probs=25.3
Q ss_pred CcccccccccCCCCCCCCCccCccccCCHHHHHHH
Q 026083 71 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 105 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~~L 105 (243)
.-.+|..|..|.|.|+ .|.|+|+ +..|...|
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~---~~~l~~~~ 72 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP---PPHLKTQL 72 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC---CHHHHHHH
T ss_pred ceeehhHhhhccccCC-CcceeCC---hHHHHHHH
Confidence 3578999999999999 8999997 44666555
No 229
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=81.21 E-value=0.86 Score=34.83 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=21.8
Q ss_pred ccccccc-ccCCCCCCCCCccCcccc
Q 026083 72 EATCRQY-EENTCNRGGYCNFMHLKR 96 (243)
Q Consensus 72 eA~Crq~-~~g~C~RGg~CNFmHv~~ 96 (243)
...|..| ..|.|..|..|.|+|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 5779998 589999999999999854
No 230
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=78.62 E-value=2.5 Score=34.54 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=28.7
Q ss_pred cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026083 30 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 64 (243)
Q Consensus 30 ~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEf 64 (243)
...|.|+|.+..+|.+|| ..||.-|+|-.|=|..
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~P 95 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIP 95 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEE
Confidence 355899999999999999 5699999998776654
No 231
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=77.80 E-value=0.74 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCccccccc-ccCCCCCCCCCccCccccCC
Q 026083 70 FREATCRQY-EENTCNRGGYCNFMHLKRIS 98 (243)
Q Consensus 70 FreA~Crq~-~~g~C~RGg~CNFmHv~~~s 98 (243)
-..++|.+| ..|-|+.|..|+|+|=.-+|
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 367899999 56999999999999976544
No 232
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=76.48 E-value=5.6 Score=30.12 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=39.9
Q ss_pred CCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCC-----eeeEEEeccC
Q 026083 16 GNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAG-----RPIIVDFSPV 67 (243)
Q Consensus 16 ~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaG-----R~I~vEfspV 67 (243)
...++++++.+.+. -.-+||.|.+.+++..-.+.++|.-|-. -+-.|||+|-
T Consensus 10 PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 10 PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 34577888877776 3558999999999999999999998842 2445777764
No 233
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.92 E-value=0.87 Score=33.03 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=30.7
Q ss_pred CCceeCCeeeEEEeccCCC-CCccccccccc-CCCCCCCCCccCccccC
Q 026083 51 SGRFYAGRPIIVDFSPVTD-FREATCRQYEE-NTCNRGGYCNFMHLKRI 97 (243)
Q Consensus 51 NGR~FaGR~I~vEfspVtd-FreA~Crq~~~-g~C~RGg~CNFmHv~~~ 97 (243)
.|.--.|. .|.|+...+ -+..+|.-|.. |.|. |..|-|+|+...
T Consensus 18 ~G~C~~G~--~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 18 RGLCKKGD--QCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TTCCSCTT--SSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred cCcCCCCC--CCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 34444443 466664332 24568999988 9999 899999999864
No 234
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=73.78 E-value=1.4 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=26.6
Q ss_pred CcccccccccCCCCCCCCCccCccccCCHHHHHHHh
Q 026083 71 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 106 (243)
Q Consensus 71 reA~Crq~~~g~C~RGg~CNFmHv~~~sr~l~~~Lf 106 (243)
+-.+|..|..|.|.|+ .|-|+|+ +..|+.+|-
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~---~~hl~~~~~ 81 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP---PTHLKTQLE 81 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC---CHHHHHHHH
T ss_pred ceeeehhhhhCcCCCC-CcceecC---HHHHHHHHH
Confidence 5688999999999998 8999996 457776664
No 235
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=72.28 E-value=7 Score=30.24 Aligned_cols=53 Identities=19% Similarity=0.465 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHhHcC---------------------cccEEEEeCCHHHHHHHHHHhCCceeCCe-----eeEEEeccC
Q 026083 15 QGNPLDPRKIQEHFE---------------------VGNVYVQFREEEQAARALKSLSGRFYAGR-----PIIVDFSPV 67 (243)
Q Consensus 15 ~~~~~~~e~lqehFE---------------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR-----~I~vEfspV 67 (243)
++..|+++++.+.+. -.-+||.|.+.++...-.+.++|.-|-.. +-.|||+|-
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCC
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCC
Confidence 345567777777665 34579999999999999999999888432 556777774
No 236
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=67.40 E-value=1.1 Score=38.44 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=49.7
Q ss_pred CCCCCHHHHHhHcC--------------cccEE---EEeCCHH---HHHHHHHHhCCceeCCeeeEEEeccCCCCCcccc
Q 026083 16 GNPLDPRKIQEHFE--------------VGNVY---VQFREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREATC 75 (243)
Q Consensus 16 ~~~~~~e~lqehFE--------------~GNVY---VkF~~ee---~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA~C 75 (243)
...++-++|-++|= +|-=| |-|.+++ .|++++..|+..| +++|..|+.|...|-.|-=
T Consensus 87 p~~isy~~LL~~Ff~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~A~~~~~~l~~~~--~~~IvTeI~p~~~Fy~AE~ 164 (187)
T 3pim_A 87 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKW--GNKIATVIEPIKNFYDAEE 164 (187)
T ss_dssp TTTSCHHHHHHHHTTSSCCBTTCC-----CGGGCCEEEESSHHHHHHHHHHHHHHGGGG--TTCBCCEEEEEEEEEEHHH
T ss_pred CccCCHHHHHHHHHHhcCCCcCCCCCCCcCcccceeeEeCCHHHHHHHHHHHHHHHHHh--CCCcEEEEeeCCCeeecHH
Confidence 35577788877764 22222 4456654 4667788888876 7899999999999965421
Q ss_pred c--ccccCCCCCCCCCccCccccC
Q 026083 76 R--QYEENTCNRGGYCNFMHLKRI 97 (243)
Q Consensus 76 r--q~~~g~C~RGg~CNFmHv~~~ 97 (243)
- +|- .+ ..++||.=+|..+.
T Consensus 165 yHQ~Yl-~k-nP~~Yccp~h~~r~ 186 (187)
T 3pim_A 165 YHQLYL-DK-NPQGYACPTHYLRE 186 (187)
T ss_dssp HHHHHC-TT-CTTCTTCCSCCCCC
T ss_pred HHHHHH-HH-CCCCCCCCcccccC
Confidence 1 121 22 23689987777653
No 237
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=30.58 E-value=20 Score=24.01 Aligned_cols=13 Identities=46% Similarity=0.899 Sum_probs=10.5
Q ss_pred CCCCCCCCccCcc
Q 026083 82 TCNRGGYCNFMHL 94 (243)
Q Consensus 82 ~C~RGg~CNFmHv 94 (243)
.|++|..|||.-+
T Consensus 26 ~C~rg~~Cn~fll 38 (41)
T 1hy9_A 26 DCPRGTSCNSFLL 38 (41)
T ss_dssp BCCTTCCBCTTTC
T ss_pred CCCCCCcchhhhe
Confidence 5999999996543
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=27.16 E-value=99 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCCHHHHHhHcC-----------cccEEEEeCCHHHHHHHHHHhC
Q 026083 17 NPLDPRKIQEHFE-----------VGNVYVQFREEEQAARALKSLS 51 (243)
Q Consensus 17 ~~~~~e~lqehFE-----------~GNVYVkF~~ee~A~~Ai~aLN 51 (243)
...-..+|.+.|. .-.+||-|.+.+.|..|+.+|+
T Consensus 25 ~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 25 KEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3345678999998 4568999999999999999874
No 239
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.18 E-value=43 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=22.8
Q ss_pred cEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026083 32 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 65 (243)
Q Consensus 32 NVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vEfs 65 (243)
+-||.-.. +.|..+++.|++-++.|++|.++..
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 34555544 4588999999999999999998864
No 240
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=21.09 E-value=23 Score=32.54 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCCCHHHHHhHcC--------------cccEE---EEeCCH---HHHHHHHHHhCCceeCCeeeEEEeccCCCCCcc
Q 026083 17 NPLDPRKIQEHFE--------------VGNVY---VQFREE---EQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 73 (243)
Q Consensus 17 ~~~~~e~lqehFE--------------~GNVY---VkF~~e---e~A~~Ai~aLNGR~FaGR~I~vEfspVtdFreA 73 (243)
..++-++|-++|= +|-=| |-|.++ +.|++++..|...| +++|.+|+.|...|-.|
T Consensus 61 ~~isy~~LL~~f~~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~a~~~~~~~~~~~--~~~IvTeI~p~~~Fy~A 135 (313)
T 3e0m_A 61 KEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERML--GRKIAVEVEQLRHYILA 135 (313)
T ss_dssp TTSCHHHHHHHHHHHSCTTCSSEETTEESGGGCCEEEESCGGGHHHHHHHHHHHHHHH--SSCCCCEEEECCCEEEC
T ss_pred CcCCHHHHHHHHHhhcCCCcCCCcCCCCccccceeEecCCHHHHHHHHHHHHHHHHhc--CCCeEEEEeeccceeEc
Confidence 5567788877663 22211 333443 45777788888764 68999999999999554
No 241
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.90 E-value=2.1e+02 Score=22.31 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHhHcC----------------cccEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 026083 15 QGNPLDPRKIQEHFE----------------VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 63 (243)
Q Consensus 15 ~~~~~~~e~lqehFE----------------~GNVYVkF~~ee~A~~Ai~aLNGR~FaGR~I~vE 63 (243)
+...++++.|+-.|| -+-+.|.|.+.+.|+..++. .--.|.|-+|.|-
T Consensus 16 lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 16 LPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 345678889999998 34569999999999988865 2344555666653
Done!