Query 026084
Match_columns 243
No_of_seqs 133 out of 697
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 8E-52 1.7E-56 371.0 19.3 203 18-238 44-246 (318)
2 COG5058 LAG1 Protein transport 100.0 2.3E-47 5E-52 338.7 15.8 201 18-238 112-315 (395)
3 KOG1608 Protein transporter of 100.0 9.6E-37 2.1E-41 268.3 12.0 198 16-233 73-270 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 6.1E-31 1.3E-35 223.8 12.3 160 73-240 1-163 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 1.3E-24 2.9E-29 182.1 11.6 154 74-238 1-161 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.5 4.5E-07 9.9E-12 64.3 6.0 43 14-56 20-62 (65)
7 KOG4474 Uncharacterized conser 95.8 0.043 9.3E-07 48.7 7.9 141 72-226 43-187 (253)
8 KOG4561 Uncharacterized conser 56.3 7.2 0.00016 35.4 1.9 71 155-230 139-216 (281)
9 PRK13454 F0F1 ATP synthase sub 30.1 2.4E+02 0.0051 23.6 6.9 27 26-52 34-60 (181)
10 PRK08476 F0F1 ATP synthase sub 25.7 2.6E+02 0.0056 22.3 6.2 28 25-52 9-36 (141)
11 PF11658 DUF3260: Protein of u 23.8 83 0.0018 31.0 3.4 83 79-185 40-122 (518)
12 PRK13461 F0F1 ATP synthase sub 22.4 3.2E+02 0.0069 22.0 6.2 31 22-52 4-34 (159)
13 PRK13453 F0F1 ATP synthase sub 20.3 4E+02 0.0086 21.9 6.5 31 22-52 17-47 (173)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-52 Score=371.02 Aligned_cols=203 Identities=48% Similarity=0.892 Sum_probs=188.8
Q ss_pred CCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhc
Q 026084 18 PAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTY 97 (243)
Q Consensus 18 p~~~Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l~~~k~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~~~~~g~~~l~ 97 (243)
-+..|.++..+++...+..|....-.+..|...+.+..+ + .+.+||+||+|+++||++++++|+++++
T Consensus 44 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~----------~--~~~~k~~Es~Wk~~yy~~s~~~glyV~~ 111 (318)
T KOG1607|consen 44 KGASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTA----------D--RRKKKFCESAWKFLYYLVSWIFGLYVMY 111 (318)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcC----------c--hhhhhhHHHHHHHHHHHHHHHHhhhhee
Confidence 355799999999999999998888777888777764333 1 2238999999999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhhcce
Q 026084 98 DEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFRFA 177 (243)
Q Consensus 98 ~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkDf~~m~~HH~~Ti~LI~~SY~~n~~ 177 (243)
++||+.|++++|.| ||+++++.++|+||++|.|||.|+++.+ +.|++||||+||++||++|++||.+||..||+
T Consensus 112 ~~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~ 185 (318)
T KOG1607|consen 112 HEPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNFT 185 (318)
T ss_pred cchhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999 9999999999999999999999999985 78999999999999999999999999999999
Q ss_pred eeceeeeeeccchhhHHhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026084 178 RVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTRS 238 (243)
Q Consensus 178 RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il~s~~~ 238 (243)
|+|++|+.+||+||++||++|++||.+.+.+++.+|++|+++|+++||+++|+++++|+..
T Consensus 186 R~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~ 246 (318)
T KOG1607|consen 186 RVGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSR 246 (318)
T ss_pred cccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-47 Score=338.67 Aligned_cols=201 Identities=29% Similarity=0.540 Sum_probs=188.8
Q ss_pred CCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhc
Q 026084 18 PAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTY 97 (243)
Q Consensus 18 p~~~Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l~~~k~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~~~~~g~~~l~ 97 (243)
.|..|++++++++++++.+|.+++..|.+|+|..++++. ++|++||+||+|.++||++++.+|+|+++
T Consensus 112 KG~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmr 179 (395)
T COG5058 112 KGILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMR 179 (395)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEe
Confidence 467899999999999999999999999999999987664 58899999999999999999999999999
Q ss_pred cCC-CCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 026084 98 DEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLSYIF 174 (243)
Q Consensus 98 ~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~--~~~l~f~e~kRkDf~~m~~HH~~Ti~LI~~SY~~ 174 (243)
++| |+.|++.+|.. ||+...|...|.||++|+|||.+| ++. ++.|++||||+||+.||++|++||..||.+
T Consensus 180 ss~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~f 253 (395)
T COG5058 180 SSPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVF 253 (395)
T ss_pred cCcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999 66699999988 999999999999999999999998 555 468999999999999999999999999999
Q ss_pred cceeeceeeeeeccchhhHHhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026084 175 RFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTRS 238 (243)
Q Consensus 175 n~~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il~s~~~ 238 (243)
||+|+|+.|...||+||++|+.+|++||++. .+++..|++|+.+|+++|++.. ++|+|+++-
T Consensus 254 hftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vlt 315 (395)
T COG5058 254 HFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVLT 315 (395)
T ss_pred HHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 9999999999999999999999999999996 8899999999999999999877 589998875
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-37 Score=268.32 Aligned_cols=198 Identities=20% Similarity=0.395 Sum_probs=190.1
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhh
Q 026084 16 SYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSV 95 (243)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l~~~k~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~~~~~g~~~ 95 (243)
.+.|++|++.+++|+++++++|+++|||+++++.+|+.++| .|..||+||+...+||..|.+||.++
T Consensus 73 Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~i 139 (374)
T KOG1608|consen 73 YYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFYI 139 (374)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhee
Confidence 56789999999999999999999999999999999998876 78899999999999999999999999
Q ss_pred hccCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 026084 96 TYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFR 175 (243)
Q Consensus 96 l~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkDf~~m~~HH~~Ti~LI~~SY~~n 175 (243)
+..|.+..|+++.|.| |||++|+..+|+||+.|+|||+|++++++|+.+||+|....+.|-+..+.+|+++|.+|
T Consensus 140 li~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYlln 214 (374)
T KOG1608|consen 140 LISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLN 214 (374)
T ss_pred eeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeceeeeeeccchhhHHhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 026084 176 FARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWIL 233 (243)
Q Consensus 176 ~~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il 233 (243)
+.|+|.+.+.||.+++.+.++++++.+.+.+ .+.+|.+++.+|+..|+......|+
T Consensus 215 l~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaVl 270 (374)
T KOG1608|consen 215 LNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAVL 270 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999955 6899999999999999988876555
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.97 E-value=6.1e-31 Score=223.80 Aligned_cols=160 Identities=35% Similarity=0.666 Sum_probs=148.6
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhhhccCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 026084 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (243)
Q Consensus 73 ~Kf~Es~w~~~~y~~~~~~g~~~l~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~-f~e~kR 151 (243)
+|++|+.||+++|+.+++.|.+++++++|++|+. .+ +|.++.++..++||.+|+||++++++.+. +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988886 34 89999999999999999999999998766 679999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcceeeceeeeeeccchhhHHhhhhhhhhcccc--hhhhHHHHHHHHHHHHHHHHHHH
Q 026084 152 ADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAE--GIASLSFILFVLSWILLRLIYYP 229 (243)
Q Consensus 152 kDf~~m~~HH~~Ti~LI~~SY~~n~~RiG~lVl~lHDisDi~L~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p 229 (243)
||.+||++||++|++++..||..|+.|+|.+++++||+||+|++++|++++.|.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 67889999999999999999999
Q ss_pred HHhhhhhcccc
Q 026084 230 FWILWSTRSVK 240 (243)
Q Consensus 230 ~~il~s~~~~~ 240 (243)
..++.+.....
T Consensus 153 ~~~~~~~~~~~ 163 (205)
T smart00724 153 FLILTVTVHYA 163 (205)
T ss_pred HHHHHHHhhhh
Confidence 98887765543
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.92 E-value=1.3e-24 Score=182.10 Aligned_cols=154 Identities=28% Similarity=0.660 Sum_probs=136.2
Q ss_pred HhhhhhhHHHHHHHHHhhhhhhhccCCCCCCccccccCCCCCCCCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026084 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQK---IKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (243)
Q Consensus 74 Kf~Es~w~~~~y~~~~~~g~~~l~~~~w~~~~~~~w~~~~~~~~P~~~---~~~~~~~yYl~q~afy~~~~~~l~f~e~k 150 (243)
||+|+.+.++++++++++|++++.++| ++|.+ ||+.+ .+...+.++.+++||++++++.....+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999988 44544 44443 34578899999999999999987777888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcceeeceeeeeeccchhhHHhhhhhhhhc-cc-chhhhHHH--HHHHHHHHHHHHH
Q 026084 151 RADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYI-GA-EGIASLSF--ILFVLSWILLRLI 226 (243)
Q Consensus 151 RkDf~~m~~HH~~Ti~LI~~SY~~n~~RiG~lVl~lHDisDi~L~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~ 226 (243)
|+|+++|++||++|+.++..||..|..|.|++++++||+||+||++.|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 55 45567788 9999999999999
Q ss_pred HHHHHhhhhhcc
Q 026084 227 YYPFWILWSTRS 238 (243)
Q Consensus 227 ~~p~~il~s~~~ 238 (243)
.+|..+.+....
T Consensus 150 ~~~~~~~~~~~~ 161 (198)
T PF03798_consen 150 LFPYLIYWVYWD 161 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999877776653
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.46 E-value=4.5e-07 Score=64.34 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=39.3
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026084 14 QESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGK 56 (243)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l~~~k 56 (243)
+..-.|++|++++++++++++++|.++|++|++|+|++++++|
T Consensus 20 ~~Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k 62 (65)
T PF08390_consen 20 GLYGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISK 62 (65)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456788999999999999999999999999999999998876
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.043 Score=48.67 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=89.3
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhhhhccCCC-CCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026084 72 IRKFNESAWKCVYFLTAELLALSVTYDEPW-FKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (243)
Q Consensus 72 ~~Kf~Es~w~~~~y~~~~~~g~~~l~~~~w-~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~k 150 (243)
..||....=.++.-+++..++.+.+.+.|- .-|+..++- ..-.-.-+..+||.+++..-+. .+++
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s-------------~~~~~l~~fS~gYfiyD~vDm~-~~~~ 108 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHS-------------LSAYQLLLFSAGYFIYDLVDML-MNEQ 108 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHh-------------hhhHHHHHHHHHHHHHHHHHHH-hcch
Confidence 346666666667777777787777776652 123322211 0112234567899999998754 5665
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcceeeceeeeeeccchhhHHhhhhhhhhcccchhh---hHHHHHHHHHHHHHHHH
Q 026084 151 RADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIA---SLSFILFVLSWILLRLI 226 (243)
Q Consensus 151 RkDf~~m~~HH~~Ti~LI~~SY~~n~~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~---~~~F~~f~~~w~~~Rl~ 226 (243)
-.+.+|.+.||++++.-....-..|-.--++....+..++++|||.=++++-.+.++-. .+.-.+=.+.++..|++
T Consensus 109 s~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 109 SELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 67899999999998765444333332222466778899999999999999987754311 12222235667777874
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=56.32 E-value=7.2 Score=35.36 Aligned_cols=71 Identities=15% Similarity=0.359 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcceeec-----eeeeeeccchhhHHhhhhhhhhcccch-hh-hHHHHHHHHHHHHHHHHH
Q 026084 155 GVSMGHHVATVILIVLSYIFRFARVG-----SVVLALHDASDVFLEIGKMSKYIGAEG-IA-SLSFILFVLSWILLRLIY 227 (243)
Q Consensus 155 ~~m~~HH~~Ti~LI~~SY~~n~~RiG-----~lVl~lHDisDi~L~~aK~~~y~~~~~-~~-~~~F~~f~~~w~~~Rl~~ 227 (243)
.+|++||++..+.+ + -..|=| .-.+++-..|-+|+.....+.-++.+. .. .+-=.+..++|+..|+..
T Consensus 139 ~~fviHh~~s~~~v-~----~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll 213 (281)
T KOG4561|consen 139 IEFVIHHIASLVFV-G----CLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILL 213 (281)
T ss_pred eeEEeeHHHHhhhh-e----eeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHH
Confidence 58999999982211 1 122223 334566788999999998888777654 11 233346688999999998
Q ss_pred HHH
Q 026084 228 YPF 230 (243)
Q Consensus 228 ~p~ 230 (243)
+|.
T Consensus 214 ~~~ 216 (281)
T KOG4561|consen 214 WPY 216 (281)
T ss_pred HHH
Confidence 875
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.08 E-value=2.4e+02 Score=23.56 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026084 26 LPLFALYFPSVRFFLEKFVFEKVAKRW 52 (243)
Q Consensus 26 ~~~~a~~~~~vR~~~~~~i~~pl~~~l 52 (243)
++...+.+.++=+++.+++++|+.+-+
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677778889999999875
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=25.66 E-value=2.6e+02 Score=22.29 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026084 25 VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (243)
Q Consensus 25 ~~~~~a~~~~~vR~~~~~~i~~pl~~~l 52 (243)
..++-.+.+.++=+++.+++++|+.+-+
T Consensus 9 ~~~~qli~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 9 LMLATFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666778889999998765
No 11
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=23.81 E-value=83 Score=30.98 Aligned_cols=83 Identities=17% Similarity=0.322 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhhhhhhccCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026084 79 AWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSM 158 (243)
Q Consensus 79 ~w~~~~y~~~~~~g~~~l~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkDf~~m~ 158 (243)
.|+-.=+.+....|+.+++.+.|+++....|.. ..+....+ .+|++= +.. -|. -++|+
T Consensus 40 ~l~~~R~~iAipig~aLly~DswLPp~~rl~~q------~~ql~~FS--------~~Yl~E-L~~-Rfi------n~~ml 97 (518)
T PF11658_consen 40 RLRRLRHWIAIPIGIALLYHDSWLPPFDRLWSQ------AGQLAGFS--------FSYLLE-LAG-RFI------NWQML 97 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH------HHHHhcCC--------HHHHHH-HHH-hcC------CHHHH
Confidence 455566778889999999999999999888754 12222222 333331 111 111 26676
Q ss_pred HHHHHHHHHHHHHhhhcceeeceeeee
Q 026084 159 GHHVATVILIVLSYIFRFARVGSVVLA 185 (243)
Q Consensus 159 ~HH~~Ti~LI~~SY~~n~~RiG~lVl~ 185 (243)
. .+..++++.-++.++.|++++|+.
T Consensus 98 ~--a~~vl~v~y~~ls~wiRvttfvv~ 122 (518)
T PF11658_consen 98 G--AAFVLLVAYLFLSQWIRVTTFVVA 122 (518)
T ss_pred H--HHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5 344566777778889999887753
No 12
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.38 E-value=3.2e+02 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026084 22 DFAVLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (243)
Q Consensus 22 Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l 52 (243)
|+...+.-.+.+.++=+++.+++++|+.+-+
T Consensus 4 ~~~~~~~~~inF~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 4 NIPTIIATIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444455556666677888899988875
No 13
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.32 E-value=4e+02 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026084 22 DFAVLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (243)
Q Consensus 22 Dl~~~~~~a~~~~~vR~~~~~~i~~pl~~~l 52 (243)
|....++-++.+.++=+++.+++++|+.+-+
T Consensus 17 ~~~t~~~~iInFliL~~lL~~~l~~pi~~~l 47 (173)
T PRK13453 17 EWGTVIVTVLTFIVLLALLKKFAWGPLKDVM 47 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666778888889988775
Done!