Query 026084
Match_columns 243
No_of_seqs 133 out of 697
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkl_B SPAC19A8.12 protein, SP 21.3 1E+02 0.0034 22.3 3.8 50 117-167 23-77 (95)
2 1lql_A OSMC, osmotical inducib 16.2 1.3E+02 0.0044 23.4 3.7 30 14-43 60-89 (166)
3 1b9u_A Protein (ATP synthase); 16.0 1.7E+02 0.0057 16.4 4.0 25 27-51 8-32 (34)
4 2kih_A Matrix protein 2; S31N, 7.0 4.6E+02 0.016 15.8 3.1 28 187-226 3-30 (43)
5 1qwi_A OSMC, osmotically induc 7.0 2.6E+02 0.0089 20.8 2.5 28 15-42 43-70 (143)
6 1nye_A Osmotically inducible p 5.6 2.8E+02 0.0096 21.3 2.0 28 15-42 62-89 (162)
7 2ql8_A Putative redox protein; 5.2 5.4E+02 0.018 18.9 3.4 28 15-42 43-70 (143)
8 1ml8_A Hypothetical protein (C 5.1 4.4E+02 0.015 19.0 2.8 26 17-42 33-58 (134)
9 2e8e_A Hypothetical protein AQ 5.0 4.1E+02 0.014 19.2 2.5 28 15-42 29-56 (132)
10 2onf_A Hypothetical protein TA 5.0 5E+02 0.017 18.8 3.1 27 16-42 39-65 (140)
No 1
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=21.30 E-value=1e+02 Score=22.32 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHHHHHHH
Q 026084 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHVATVIL 167 (243)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~-----e~kRkDf~~m~~HH~~Ti~L 167 (243)
=|....+...+.++.+|.|+|.+.=+. .-. .-.-|||.+++.+|+-.+.-
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~-~~~np~Lp~~~lk~F~~~if~~cp~L~~ 77 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPLLWK 77 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTHHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccc-cccCCCCCCCcHHHHHHHHHHhCHHHHh
Confidence 577777778899999999999653211 000 11236899999998765543
No 2
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=16.16 E-value=1.3e+02 Score=23.40 Aligned_cols=30 Identities=7% Similarity=-0.180 Sum_probs=25.4
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHHH
Q 026084 14 QESYPAYEDFAVLPLFALYFPSVRFFLEKF 43 (243)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~~ 43 (243)
+..-|+|.|++.....+|....++.+.++.
T Consensus 60 ~~~g~nP~ELllaalaaC~~~~~~~~a~~~ 89 (166)
T 1lql_A 60 TAKGFGPLAALLSGLAACELATANLMAPAK 89 (166)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345699999999999999999999887663
No 3
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=15.95 E-value=1.7e+02 Score=16.41 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026084 27 PLFALYFPSVRFFLEKFVFEKVAKR 51 (243)
Q Consensus 27 ~~~a~~~~~vR~~~~~~i~~pl~~~ 51 (243)
+.-++.+.++=.++.+++++|+.+-
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~ 32 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667778899999998764
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=7.04 E-value=4.6e+02 Score=15.82 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=16.5
Q ss_pred ccchhhHHhhhhhhhhcccchhhhHHHHHHHHHHHHHHHH
Q 026084 187 HDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLI 226 (243)
Q Consensus 187 HDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~ 226 (243)
.|.||++.-+| ++.-++=.+.|+.-|++
T Consensus 3 ~dssdplv~aa------------~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 3 NDSSDPLVVAA------------NIIGILHLILWILDRLF 30 (43)
T ss_dssp ---CCHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 46677765443 44445567889999985
No 5
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=7.00 E-value=2.6e+02 Score=20.77 Aligned_cols=28 Identities=14% Similarity=0.085 Sum_probs=24.4
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
..-|.|.|++..-..+|....++.++++
T Consensus 43 ~~g~nP~eLllaala~C~~~~~~~~a~~ 70 (143)
T 1qwi_A 43 EKGTNPEELIGAAHAACFSMALSLMLGE 70 (143)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999988765
No 6
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=5.56 E-value=2.8e+02 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.085 Sum_probs=24.3
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
..-|+|.|++..-..+|....++.++++
T Consensus 62 ~~g~nPeeLllaalaaC~~~~l~~~a~~ 89 (162)
T 1nye_A 62 EKGTNPEELIGAAHAACFSMALSLMLGE 89 (162)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999988765
No 7
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=5.16 E-value=5.4e+02 Score=18.94 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=24.0
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
..-|+|.|++..-..+|....++.+.++
T Consensus 43 ~~g~nP~eLllaala~C~~~~~~~~a~~ 70 (143)
T 2ql8_A 43 HPGTNPEQLLGLSLSTCLEATLEAVEKE 70 (143)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999988765
No 8
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=5.08 E-value=4.4e+02 Score=19.04 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.2
Q ss_pred CCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 17 YPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 17 ~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
-|+|.|++..-..+|..+.++.+.++
T Consensus 33 g~nP~eLllaala~C~~~~~~~~a~~ 58 (134)
T 1ml8_A 33 APSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHH
Confidence 68999999999999999999988765
No 9
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=5.00 E-value=4.1e+02 Score=19.18 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=24.1
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
..-|+|.|++..-..+|....++.+.++
T Consensus 29 ~~g~nP~eLllaala~C~~~~~~~~a~~ 56 (132)
T 2e8e_A 29 EKGLNPMELLLVSIGSCSGVDVYHILKK 56 (132)
T ss_dssp TTSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568999999999999999999888765
No 10
>2onf_A Hypothetical protein TA0195; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE COA; 1.70A {Thermoplasma acidophilum} SCOP: d.227.1.1
Probab=4.99 E-value=5e+02 Score=18.80 Aligned_cols=27 Identities=11% Similarity=-0.024 Sum_probs=23.2
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHHH
Q 026084 16 SYPAYEDFAVLPLFALYFPSVRFFLEK 42 (243)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (243)
.-|+|.|++..-..+|....++.+.++
T Consensus 39 ~g~~P~eLllaala~C~~~~~~~~a~~ 65 (140)
T 2onf_A 39 GQLYPETLFPSVLASCLLTTFLEFKDR 65 (140)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999988887665
Done!