BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026085
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 47 MHPVDTVKTRIQSQAILSGSQNQ-KSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 105
++P+D +TR+ + +Q + + + ++ +DGLRG Y+G V G + A
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 106 YFGFIESTKKWI-EESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSW 164
YFG ++ K + + + + W IA V G Y P + +++RM +Q K
Sbjct: 190 YFGVYDTAKGMLPDPKNVHIIVSW--MIAQTVTAVAGLVSY-PFDTVRRRMMMQSGRK-- 244
Query: 165 GSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVC 224
G+ +M YTG I +++G + + G WS + R + A ++V
Sbjct: 245 GADIM---------------YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 289
Query: 225 Y 225
Y
Sbjct: 290 Y 290
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 66/186 (35%), Gaps = 26/186 (13%)
Query: 31 REFLWXXXXXXXXXXMMHPVDTVKTRIQSQAI---LSGSQNQKSISQMVRSVWAADGLRG 87
++FL + P++ VK +Q Q +S + K I V + G
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 88 FYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFI-----AGAVGDTLGS 142
F+RG V T A F F + K+ W +F GA G T
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 143 FVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLR 202
FVY P + + R+ K Q +TG+ + I++ GLR
Sbjct: 129 FVY-PLDFARTRLAAD---------------VGKGAAQR--EFTGLGNCITKIFKSDGLR 170
Query: 203 GLYAGY 208
GLY G+
Sbjct: 171 GLYQGF 176
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 32 EFLWXXXXXXXXXXMMHPVDTVKTRIQ----SQAIL--SGSQNQKSISQMVRSVWAADGL 85
+FL + P+DT K R+Q SQ ++ + S + + + ++ +G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 86 RGFYRGVTPGVTGSLATGATYFGFIESTKKWIEE--SHPSLGGHWAHFIAGAVGDTLGSF 143
R Y G+ G+ ++ + G +S K++ + H +G + +AG+ L
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIG---SRLLAGSTTGALAVA 120
Query: 144 VYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRG 203
V P +V+K R Q Q ++ G Y +A +I RE+G+RG
Sbjct: 121 VAQPTDVVKVRFQAQA--RAGGG----------------RRYQSTVEAYKTIAREEGIRG 162
Query: 204 LYAGYWSTLARD 215
L+ G +AR+
Sbjct: 163 LWKGTSPNVARN 174
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 130 HFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIY 189
F+ + + P + K R+Q+QG +S G + + Y G+
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQG--ESQGLVRTAAS----------AQYRGVL 51
Query: 190 QAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMV 223
++ R +G R LY G + L R + FA + +
Sbjct: 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRI 85
>pdb|1T2J|A Chain A, Crystal Structure Of A Human Vh Domain
Length = 116
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 92 VTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 139
V PG + L+ A+ F F S W+ ++ P G W I+G+ G+T
Sbjct: 12 VQPGGSLRLSCAASGFTFSNSAMSWVRQA-PGKGLEWVSSISGSGGNT 58
>pdb|2WQF|A Chain A, Crystal Structure Of The Nitroreductase Cind From
Lactococcus Lactis In Complex With Fmn
Length = 202
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 154 RMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLA 213
R ++ G ++G+IL ++ V NLQ +Y +W EQG + W+ LA
Sbjct: 86 RAKLDGFKAAFGTILFFEDQAVVKNLQ---EQFALYADNFPVWSEQGSGIISVNVWTALA 142
Query: 214 R 214
Sbjct: 143 E 143
>pdb|1RMF|H Chain H, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 216
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 92 VTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 139
V PGV+ ++ + + FI+ W++ESH + W I+ GDT
Sbjct: 12 VRPGVSVKISCKGSGYTFIDYAIHWVKESH-AKSLEWIGVISAYSGDT 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,168,484
Number of Sequences: 62578
Number of extensions: 274264
Number of successful extensions: 859
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 19
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)