Query 026085
Match_columns 243
No_of_seqs 129 out of 1174
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.6E-40 1.2E-44 278.6 18.1 189 27-237 102-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.3E-38 1.1E-42 265.8 21.2 194 25-235 3-203 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5E-38 1.7E-42 264.7 18.4 185 28-232 111-296 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.2E-38 2.5E-42 264.5 17.4 186 31-235 3-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 30.3 42 0.0014 21.6 2.9 29 208-236 41-69 (81)
6 2acm_A Mucin-1; auto-catalytic 26.2 11 0.00039 22.6 -0.4 20 70-89 40-59 (66)
7 1pp9_G Ubiquinol-cytochrome C 25.7 69 0.0024 20.5 3.3 37 200-236 33-69 (81)
8 3vjj_A P9-1; 3.00A {Rice black 16.4 75 0.0026 25.6 2.3 36 41-85 273-308 (368)
9 3cx5_H Cytochrome B-C1 complex 15.4 1.1E+02 0.0038 20.1 2.6 38 199-236 42-79 (93)
10 3f2e_A SIRV coat protein; four 14.1 1E+02 0.0034 19.6 2.0 34 183-216 6-43 (100)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-40 Score=278.63 Aligned_cols=189 Identities=19% Similarity=0.290 Sum_probs=172.6
Q ss_pred chhHHHHHHHHHHHHHHHhhcccHHHHHHHHHhccccCCCCCCCCHHHHHHHHHHhcchhhhccCchhhhhhhHhhHHHH
Q 026085 27 FFVWREFLWGGIAGGFGEGMMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATY 106 (243)
Q Consensus 27 ~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 106 (243)
.+.+..+++|++||+++.++++|+|+||+|+|++........|++.++++++|+++||++|||||+.+.+++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999986433445789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhhhhhhccccHHHHHHHHHhcccccccccccccccccccccccccCCCC
Q 026085 107 FGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYT 186 (243)
Q Consensus 107 f~~~~~~k~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
|.+||.+|+.+.+......+....+++|++|+++++++++|+|++|+|||.+.. ..|.
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----------------------~~y~ 239 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----------------------GQYH 239 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----------------------SSCC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----------------------cccC
Confidence 999999999887655445667789999999999999999999999999998764 2499
Q ss_pred cHHHHHHHHHHhhchhhhccchhHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 026085 187 GIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFL 237 (243)
Q Consensus 187 ~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~ 237 (243)
++++|+++++++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+.+
T Consensus 240 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp SHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999876654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.3e-38 Score=265.84 Aligned_cols=194 Identities=19% Similarity=0.295 Sum_probs=167.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccHHHHHHHHHhccccC---CCCCCCCHHHHHHHHHHhcchhhhccCchhhhhhhHh
Q 026085 25 NQFFVWREFLWGGIAGGFGEGMMHPVDTVKTRIQSQAILS---GSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLA 101 (243)
Q Consensus 25 ~~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~ 101 (243)
+..+.+..+++|++||+++.++++|+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+.+++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 3456788999999999999999999999999999986321 1346899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhh-cCCCC---CchHHHHHHHHHHhhhhhhccccHHHHHHHHHhcccccccccccccccccccc
Q 026085 102 TGATYFGFIESTKKWIEE-SHPSL---GGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKS 177 (243)
Q Consensus 102 ~~~~~f~~~~~~k~~~~~-~~~~~---~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~ 177 (243)
..+++|.+||.+|+.+.+ .+... ......+++|++|+++++++++|+|++|+|+|++....
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--------------- 147 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---------------
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---------------
Confidence 999999999999995433 22222 13467899999999999999999999999999975321
Q ss_pred cccccCCCCcHHHHHHHHHHhhchhhhccchhHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 026085 178 NLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPN 235 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~ 235 (243)
.....|+++++++++++++||++|||||+.+++++.+|+.+++|.+||.+++.+.+
T Consensus 148 --~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 148 --AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp --TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred --CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01246899999999999999999999999999999999999999999999997643
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5e-38 Score=264.74 Aligned_cols=185 Identities=20% Similarity=0.386 Sum_probs=160.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccHHHHHHHHHhccccC-CCCCCCCHHHHHHHHHHhcchhhhccCchhhhhhhHhhHHHH
Q 026085 28 FVWREFLWGGIAGGFGEGMMHPVDTVKTRIQSQAILS-GSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATY 106 (243)
Q Consensus 28 ~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~Q~~~~~~-~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 106 (243)
..+..+++|++||+++.++++|+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+.+++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999985321 245689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhhhhhhccccHHHHHHHHHhcccccccccccccccccccccccccCCCC
Q 026085 107 FGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYT 186 (243)
Q Consensus 107 f~~~~~~k~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
|.+||.+|+.+.+.. ..+.+..+++|++|+++++++++|+|++|+|||.+.... .....|+
T Consensus 191 f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-----------------~~~~~y~ 251 (297)
T 1okc_A 191 FGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-----------------GADIMYT 251 (297)
T ss_dssp HHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-----------------GGGCSCS
T ss_pred HHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-----------------CCCCCCC
Confidence 999999999775432 345678899999999999999999999999999875321 0124699
Q ss_pred cHHHHHHHHHHhhchhhhccchhHHHhhhhhhhhHHHHHHHHHHHH
Q 026085 187 GIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILY 232 (243)
Q Consensus 187 ~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~ 232 (243)
++++|+++++++||++|||||+.++++|. +..+++|.+||.+|+.
T Consensus 252 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 252 GTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp SHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 99999999999999999999999999995 5789999999998875
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.2e-38 Score=264.52 Aligned_cols=186 Identities=23% Similarity=0.342 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHhccccC------CCCCCCCHHHHHHHHHHhcchhhhccCchhhhhhhHhhHH
Q 026085 31 REFLWGGIAGGFGEGMMHPVDTVKTRIQSQAILS------GSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGA 104 (243)
Q Consensus 31 ~~~~~g~~ag~~~~~~~~Pld~ik~r~Q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 104 (243)
..+++|++||+++.+++||+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+.+++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999986421 1346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhhhhhhccccHHHHHHHHHhcccccccccccccccccccccccccCC
Q 026085 105 TYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGY 184 (243)
Q Consensus 105 ~~f~~~~~~k~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (243)
++|.+||.+|+.+.+... ..+.+..+++|++|++++.++++|+|++|+|+|++.... ....
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------------~~~~ 143 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG------------------GGRR 143 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC------------------CSSS
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC------------------CCCC
Confidence 999999999998865422 456788999999999999999999999999999986421 0146
Q ss_pred CCcHHHHHHHHHHhhchhhhccchhHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 026085 185 YTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPN 235 (243)
Q Consensus 185 ~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~ 235 (243)
|.++++++++++++||++|||||+.+++++.+++.+++|.+||.+++.+.+
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999998754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=30.33 E-value=42 Score=21.58 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=23.2
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 026085 208 YWSTLARDVPFAGLMVCYFCCLILYFPNF 236 (243)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ye~l~~~~~~~ 236 (243)
+...++..+|..++.+.+|++-++....+
T Consensus 41 ~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 41 FSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999998865543
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=26.17 E-value=11 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHhcchhhhc
Q 026085 70 KSISQMVRSVWAADGLRGFY 89 (243)
Q Consensus 70 ~~~~~~~~~i~~~~G~~gly 89 (243)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56888999999999998876
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=25.72 E-value=69 Score=20.54 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=27.5
Q ss_pred chhhhccchhHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 026085 200 GLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNF 236 (243)
Q Consensus 200 G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~ 236 (243)
|+.-.+|-+...++..+|..++.+.+|++-++....+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 4444455566677788999999999999998865443
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=16.44 E-value=75 Score=25.59 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHhhcccHHHHHHHHHhccccCCCCCCCCHHHHHHHHHHhcch
Q 026085 41 GFGEGMMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGL 85 (243)
Q Consensus 41 ~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~ 85 (243)
-++.+=-+|||.+|-.++..- ++-..+++.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli---------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI---------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC---------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc---------cChHHHHHHHHhcCc
Confidence 345566899999998887653 344677888888884
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=15.38 E-value=1.1e+02 Score=20.13 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=28.2
Q ss_pred hchhhhccchhHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 026085 199 QGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNF 236 (243)
Q Consensus 199 ~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~ 236 (243)
+|+.-.+|-+...++..+|..++.+.+|++-++....+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 34555555566677788999999999999998866544
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=14.10 E-value=1e+02 Score=19.56 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHHhhch----hhhccchhHHHhhhh
Q 026085 183 GYYTGIYQAGSSIWREQGL----RGLYAGYWSTLARDV 216 (243)
Q Consensus 183 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~ 216 (243)
+++.++-+-+..++.+.|+ +.+|+|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4577777888888888887 668999988877643
Done!