Query 026086
Match_columns 243
No_of_seqs 149 out of 1408
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 2.8E-36 6E-41 267.9 17.4 205 20-235 49-295 (390)
2 PF00481 PP2C: Protein phospha 100.0 1.1E-32 2.4E-37 238.3 15.3 180 38-238 2-203 (254)
3 KOG0697 Protein phosphatase 1B 100.0 6.1E-33 1.3E-37 235.3 13.1 172 36-234 22-206 (379)
4 KOG0698 Serine/threonine prote 100.0 1.1E-31 2.3E-36 240.6 21.3 171 36-225 40-224 (330)
5 PLN03145 Protein phosphatase 2 100.0 1.3E-31 2.8E-36 242.2 18.5 176 40-238 70-271 (365)
6 PTZ00224 protein phosphatase 2 100.0 5.5E-29 1.2E-33 226.0 18.3 152 41-222 28-180 (381)
7 COG0631 PTC1 Serine/threonine 99.9 1.7E-26 3.6E-31 200.9 13.1 179 37-239 10-199 (262)
8 KOG0699 Serine/threonine prote 99.9 8.6E-25 1.9E-29 191.6 13.9 77 129-221 329-405 (542)
9 cd00143 PP2Cc Serine/threonine 99.9 3.9E-23 8.5E-28 176.6 18.9 180 38-238 3-198 (254)
10 smart00332 PP2Cc Serine/threon 99.9 8.2E-23 1.8E-27 175.2 19.7 164 39-223 9-178 (255)
11 PRK14559 putative protein seri 99.9 8E-23 1.7E-27 195.6 15.6 179 38-239 378-577 (645)
12 KOG1323 Serine/threonine phosp 99.7 1.8E-17 3.8E-22 144.5 12.7 117 59-192 142-297 (493)
13 PF13672 PP2C_2: Protein phosp 99.6 2.7E-14 5.8E-19 119.7 13.3 131 41-179 4-138 (212)
14 KOG1379 Serine/threonine prote 99.2 2.7E-10 5.9E-15 99.4 11.4 101 47-160 89-199 (330)
15 smart00331 PP2C_SIG Sigma fact 99.1 2.1E-09 4.6E-14 88.6 11.8 103 43-159 11-116 (193)
16 KOG0618 Serine/threonine phosp 98.9 7.7E-09 1.7E-13 101.2 9.6 185 3-226 497-698 (1081)
17 TIGR02865 spore_II_E stage II 97.9 0.00018 3.9E-09 71.6 13.9 163 22-209 540-710 (764)
18 PF07228 SpoIIE: Stage II spor 97.2 0.01 2.3E-07 48.3 12.4 88 60-160 3-92 (193)
19 PRK10693 response regulator of 75.0 58 0.0013 28.6 11.7 100 46-156 147-253 (303)
20 COG0631 PTC1 Serine/threonine 68.3 58 0.0013 28.2 9.7 90 69-160 49-146 (262)
21 PF05785 CNF1: Rho-activating 30.1 61 0.0013 28.6 3.4 23 129-152 131-153 (281)
22 COG2208 RsbU Serine phosphatas 26.7 4.7E+02 0.01 23.5 12.0 104 43-160 156-263 (367)
23 PF02953 zf-Tim10_DDP: Tim10/D 24.0 21 0.00046 23.9 -0.4 18 2-19 14-31 (66)
24 PF01436 NHL: NHL repeat; Int 20.3 1.6E+02 0.0035 15.9 3.3 19 139-157 10-28 (28)
25 TIGR02276 beta_rpt_yvtn 40-res 20.2 1.5E+02 0.0033 16.9 3.0 19 141-159 3-21 (42)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=267.95 Aligned_cols=205 Identities=46% Similarity=0.739 Sum_probs=176.2
Q ss_pred CCCccccccCCCCCCCCCccccccCCC-------CCCCCcEEEe--eCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhh
Q 026086 20 GGDGLLWHMDLKSHASGDYSIAVVQAN-------SMLEDQGQVF--TSPSATYVGVYDGHGGPEASRFITRHLFPFLHKF 90 (243)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~s~~~~g~r-------~~~ED~~~~~--~~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~ 90 (243)
..++++|.++...+..++++++..+.. +.-||+..+. ...++.|+||||||||.++|+|++++|+.++...
T Consensus 49 ~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~ 128 (390)
T KOG0700|consen 49 SVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARE 128 (390)
T ss_pred CcccccccccccccCcccchhhhhhhhhhhhhcCCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHH
Confidence 568899999999999999998877664 4667776544 4678999999999999999999999999998832
Q ss_pred hhh--------------------------------c-CCChHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEE
Q 026086 91 TTE--------------------------------Q-GGLSAEVIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVG 137 (243)
Q Consensus 91 ~~~--------------------------------~-~~~~~~~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~ 137 (243)
+.. . ...+.++|.+||.+++++|++...+.....++...+|+||+|.
T Consensus 129 L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~ 208 (390)
T KOG0700|consen 129 LQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVG 208 (390)
T ss_pred hhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEE
Confidence 111 1 3446789999999999999999999988899999999999999
Q ss_pred EEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHHHHHHhCCCCCCeEEEeCCeeeecccccccc
Q 026086 138 VIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRKEVEALHPDDSHIVVFSRGVWRIKGIIQHLI 217 (243)
Q Consensus 138 ~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr 217 (243)
++.+..|||||+|||||||+....++. .|.+.|||+||+.++++|+.||+..||++..+|+... |||+|.|++||
T Consensus 209 ~i~~~~LyVaN~GDSRAVLG~~~~~~~---~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~vsR 283 (390)
T KOG0700|consen 209 LIKGGDLYVANVGDSRAVLGVVENNGS---WLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQVSR 283 (390)
T ss_pred EEeCCeEEEEecCcchhhhceecCCCC---eEEEEecChhhccccHHHHHHHHHhCCCCcceEeecc--ceeeEEEEeee
Confidence 999999999999999999988874443 4799999999999999999999999999999887765 89999999888
Q ss_pred cccccccCCceeeecCCC
Q 026086 218 HQAVSVTFPFVGFKINWR 235 (243)
Q Consensus 218 ~~g~~~~~gd~~~k~~~~ 235 (243)
++||..+|.++.
T Consensus 284 ------AfGd~~lK~~~~ 295 (390)
T KOG0700|consen 284 ------AFGDGYLKWPEF 295 (390)
T ss_pred ------eccceeecchhh
Confidence 667888887743
No 2
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.1e-32 Score=238.31 Aligned_cols=180 Identities=27% Similarity=0.374 Sum_probs=141.7
Q ss_pred ccccccCC-CCCCCCcEEEee-------CCCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCC-ChHHHHHHHHHH
Q 026086 38 YSIAVVQA-NSMLEDQGQVFT-------SPSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGG-LSAEVIKKAFDA 108 (243)
Q Consensus 38 ~s~~~~g~-r~~~ED~~~~~~-------~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~-~~~~~l~~af~~ 108 (243)
|+++..++ |++|||++++.. ..+..+|||||||||..+|+|++++|+..+.+....... ...++|..+|..
T Consensus 2 ~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~ 81 (254)
T PF00481_consen 2 YGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLA 81 (254)
T ss_dssp EEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeee
Confidence 45555555 889999998885 347899999999999999999999999888887666555 567899999999
Q ss_pred -HHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeee-cCCCCCCCCCHHHH
Q 026086 109 -TEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAE-RLSVDHNVGVEEVR 186 (243)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~-~LT~dH~~~~~~E~ 186 (243)
++..+.+.... . ....+||||++++|.++++|+|||||||+|+++.+ ... +||+||+|.++.|+
T Consensus 82 ~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------~~~~~Lt~dH~~~~~~E~ 147 (254)
T PF00481_consen 82 FTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------GIIKQLTRDHKPSNPDER 147 (254)
T ss_dssp HHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------EEEEESS---STTSHHHH
T ss_pred cccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeecc---------ccccccccccccchhhcc
Confidence 88777763322 1 23578999999999999999999999999999998 455 99999999999999
Q ss_pred HHHHHhCCCCCCeEEEeCCeeeecccccccccccccccCC-----------ceeeecCCCccc
Q 026086 187 KEVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSVTFP-----------FVGFKINWRCLF 238 (243)
Q Consensus 187 ~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~~~g-----------d~~~k~~~~~~f 238 (243)
.||.++|| .+.. .+|+.|.|++||++|+..... ...++++.++.|
T Consensus 148 ~RI~~~gg----~v~~---~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~f 203 (254)
T PF00481_consen 148 ERIRKAGG----RVSE---NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEF 203 (254)
T ss_dssp HHHHHTT-----GEEE---TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEE
T ss_pred ceeecccc----cccc---chhhhhccccccccccccccccccceeeeecccccccccccceE
Confidence 99999975 2332 459999999999988776554 668888877644
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-33 Score=235.29 Aligned_cols=172 Identities=21% Similarity=0.277 Sum_probs=141.9
Q ss_pred CCccccccCC-CCCCCCcEEEe-----eCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcC----C---ChHHHH
Q 026086 36 GDYSIAVVQA-NSMLEDQGQVF-----TSPSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQG----G---LSAEVI 102 (243)
Q Consensus 36 ~~~s~~~~g~-r~~~ED~~~~~-----~~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~----~---~~~~~l 102 (243)
.+|.++++++ |-.|||++... .-++|+||||||||.|+++|.+++++|.+.|.....+.. . +...-|
T Consensus 22 lryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GI 101 (379)
T KOG0697|consen 22 LRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGI 101 (379)
T ss_pred eeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhH
Confidence 4899999999 55999998766 346999999999999999999999999999977544432 1 234568
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCC
Q 026086 103 KKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGV 182 (243)
Q Consensus 103 ~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~ 182 (243)
+.+|+++++.+.+..+.... ...+||||+-+++...++|++|+||||+++++++ .+..-|+||+|.+
T Consensus 102 rtGFL~iDE~mr~~~~~~~~----~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------~~~f~TqDHKP~~ 168 (379)
T KOG0697|consen 102 RTGFLSIDEIMRTLSDISKG----SDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------EVVFSTQDHKPYL 168 (379)
T ss_pred hhcceeHHHHHhhhhhhhcc----cccCCceEEEEEecCceEEEEecCcchhheecCC---------ceEEeccCCCCCC
Confidence 88899998877765433222 1248999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEeCCeeeecccccccccccccccCCceeeecCC
Q 026086 183 EEVRKEVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSVTFPFVGFKINW 234 (243)
Q Consensus 183 ~~E~~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~~~gd~~~k~~~ 234 (243)
|.|++||..+| +.|... ||+|.|++|| ++||+.||-..
T Consensus 169 p~EkeRIqnAG----GSVMIq----RvNGsLAVSR------AlGDydyK~v~ 206 (379)
T KOG0697|consen 169 PKEKERIQNAG----GSVMIQ----RVNGSLAVSR------ALGDYDYKNVP 206 (379)
T ss_pred hHHHHHHhcCC----CeEEEE----Eecceeeeeh------hccCcccccCC
Confidence 99999999995 567666 9999995555 77888887663
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-31 Score=240.62 Aligned_cols=171 Identities=34% Similarity=0.464 Sum_probs=141.7
Q ss_pred CCccccccCC-CCCCCCcEEEee--------CC-CceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCC--hHHHHH
Q 026086 36 GDYSIAVVQA-NSMLEDQGQVFT--------SP-SATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGL--SAEVIK 103 (243)
Q Consensus 36 ~~~s~~~~g~-r~~~ED~~~~~~--------~~-~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~--~~~~l~ 103 (243)
..++.+..++ |+.|||++.... .. ...||||||||||+.+|+|+.++|+..+.+........ ..++++
T Consensus 40 ~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~ 119 (330)
T KOG0698|consen 40 RLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALR 119 (330)
T ss_pred cceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence 3444445555 789999987772 22 47999999999999999999999999999877766542 678999
Q ss_pred HHHH-HHHHHHHHHHHhhccCCCCcccccceEEEEEEECC-EEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCC
Q 026086 104 KAFD-ATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKD-VLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVG 181 (243)
Q Consensus 104 ~af~-~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~-~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~ 181 (243)
++|. +++..+++. ..+....|||++++++.+. +|||||+|||||||++++ + .+++||.||+|.
T Consensus 120 ~~F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~---~-----~a~~Ls~DHkP~ 184 (330)
T KOG0698|consen 120 RAFLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKG---G-----VAVQLSVDHKPD 184 (330)
T ss_pred HHHHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCC---C-----eeeeCCCCCCCC
Confidence 9999 699988864 1123567999988888855 999999999999999875 3 799999999999
Q ss_pred CHHHHHHHHHhCCCCCCeEEEeCCeeeecccccccccccccccC
Q 026086 182 VEEVRKEVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSVTF 225 (243)
Q Consensus 182 ~~~E~~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~~~ 225 (243)
.+.|+.||.++| +.|....|+|||.|.|+|||++|+...+
T Consensus 185 ~~~E~~RI~~~G----G~v~~~~~~~Rv~G~LavsRa~GD~~~k 224 (330)
T KOG0698|consen 185 REDERERIEAAG----GRVSNWGGVWRVNGVLAVSRAFGDVELK 224 (330)
T ss_pred cHHHHHHHHHcC----CEEEEcCCcceEeceEEEeeecCCHHhc
Confidence 999999999995 6677777899999999999987775555
No 5
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.98 E-value=1.3e-31 Score=242.19 Aligned_cols=176 Identities=27% Similarity=0.301 Sum_probs=139.5
Q ss_pred ccccCCCCCCCCcEEEeeC------------CCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHH
Q 026086 40 IAVVQANSMLEDQGQVFTS------------PSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFD 107 (243)
Q Consensus 40 ~~~~g~r~~~ED~~~~~~~------------~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~ 107 (243)
.+..|.|+.|||++++..+ .+..||||||||||+.+++|++++|++.|.+.... .....++|.++|.
T Consensus 70 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~-~~~~~~al~~af~ 148 (365)
T PLN03145 70 WADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF-PREIEKVVSSAFL 148 (365)
T ss_pred EccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHH
Confidence 3556779999999876531 23589999999999999999999999999864332 2235678999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHH
Q 026086 108 ATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRK 187 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~ 187 (243)
.+++.+.+.... .....+|||++++++.++++|+||+||||+|+++++ .+++||+||+|.++.|++
T Consensus 149 ~~d~~~~~~~~~-----~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------~~~~LT~DH~~~~~~E~~ 214 (365)
T PLN03145 149 QTDTAFAEACSL-----DASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------KAIEMSRDHKPMCSKERK 214 (365)
T ss_pred HHhHHHHhhhcc-----ccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------eEEEecCCCCCCCHHHHH
Confidence 999988754321 122358999999999999999999999999999988 799999999999999999
Q ss_pred HHHHhCCCCCCeEEEeCCeeeeccccccccccccc--------------ccCCceeeecCCCccc
Q 026086 188 EVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVS--------------VTFPFVGFKINWRCLF 238 (243)
Q Consensus 188 RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~--------------~~~gd~~~k~~~~~~f 238 (243)
||...+ +.+. .| |+.|.+.+||++|+. ..|....++++..+.|
T Consensus 215 RI~~~G----g~v~--~g--~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~f 271 (365)
T PLN03145 215 RIEASG----GYVY--DG--YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEF 271 (365)
T ss_pred HHHHcC----Ccee--cc--eECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEE
Confidence 999885 3343 34 899999999998853 3444456777765555
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.96 E-value=5.5e-29 Score=225.97 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=124.5
Q ss_pred cccCCCCCCCCcEEEeeCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 026086 41 AVVQANSMLEDQGQVFTSPSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRS 120 (243)
Q Consensus 41 ~~~g~r~~~ED~~~~~~~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~ 120 (243)
+..|.|+.|||++++...++..||||||||||.++|+|++++|...+.+... ....+.|+++|..+++++.+..
T Consensus 28 s~~G~R~~nED~~~v~~~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~---~~~~~~l~~a~~~~d~~i~~~~--- 101 (381)
T PTZ00224 28 CVNGYRESMEDAHLLYLTDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE---PMTDERMEELCLEIDEEWMDSG--- 101 (381)
T ss_pred eCCCCCCCCCCeeEeccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHHhcc---
Confidence 4456699999998877666778999999999999999999999987765321 2235678999999998887421
Q ss_pred ccCCCCcccccceEEEEEEE-CCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHHHHHHhCCCCCCe
Q 026086 121 WSARPQIASVGSCCLVGVIA-KDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRKEVEALHPDDSHI 199 (243)
Q Consensus 121 ~~~~~~~~~sGtTa~v~~i~-~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~RI~~~~~~~~~~ 199 (243)
..+|||+++++|. +.++|||||||||+|+++++ ++++||.||+|.++.|+.||...++ .
T Consensus 102 -------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------~~~~LT~DH~~~~~~E~~RI~~~gg----~ 161 (381)
T PTZ00224 102 -------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------KLVFATEDHKPNNPGERQRIEACGG----R 161 (381)
T ss_pred -------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------EEEEcccCCCCCCHHHHhHHHHccC----E
Confidence 1359999988776 57999999999999999987 8999999999999999999998853 3
Q ss_pred EEEeCCeeeeccccccccccccc
Q 026086 200 VVFSRGVWRIKGIIQHLIHQAVS 222 (243)
Q Consensus 200 v~~~~G~~rv~g~l~~tr~~g~~ 222 (243)
+.. + |+.|.+.+||++|+.
T Consensus 162 v~~--~--Rv~G~l~vTRalGd~ 180 (381)
T PTZ00224 162 VVS--N--RVDGDLAVSRAFGDR 180 (381)
T ss_pred ecc--c--cccCceeeecccCCc
Confidence 432 3 999999999988874
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-26 Score=200.89 Aligned_cols=179 Identities=18% Similarity=0.140 Sum_probs=135.3
Q ss_pred CccccccCC-CCCCCCcEEEeeCCC---ceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCC-----hHHHHHHHHH
Q 026086 37 DYSIAVVQA-NSMLEDQGQVFTSPS---ATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGL-----SAEVIKKAFD 107 (243)
Q Consensus 37 ~~s~~~~g~-r~~~ED~~~~~~~~~---~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~-----~~~~l~~af~ 107 (243)
.+..+..|. |..|||++.+..+.+ ..||+|||||||+++++++++.+...|.+........ ..+.+.+++.
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAIL 89 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 344556666 778999998886443 4699999999999999999999999998764442211 3578888888
Q ss_pred HHHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHH
Q 026086 108 ATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRK 187 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~ 187 (243)
.++..+.+... .+.....+|||++++++.++++|+|||||||+|+++++ .++|||.||++.+++++.
T Consensus 90 ~~n~~i~~~~~----~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------~~~~lT~DH~~~~~~~~~ 156 (262)
T COG0631 90 KANEAIAEEGQ----LNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------ELKQLTEDHSLVNRLEQR 156 (262)
T ss_pred HHHHHHHHhhh----cccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------ceEEeccCCcHHHHHHHh
Confidence 88888886532 23445679999999999999999999999999999999 899999999999999998
Q ss_pred HHHHhCCCCCCeEEEeCCeeeecccccccccccccc--cCCceeeecCCCcccc
Q 026086 188 EVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSV--TFPFVGFKINWRCLFE 239 (243)
Q Consensus 188 RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~--~~gd~~~k~~~~~~f~ 239 (243)
|+...++. ... + |.+ ++||++|... .|.....+++..++|+
T Consensus 157 ~~~~~~~~----~~~--~--~~~---~ltralG~~~~~~p~~~~~~~~~~d~ll 199 (262)
T COG0631 157 GIITPEEA----RSH--P--RRN---ALTRALGDFDLLEPDITELELEPGDFLL 199 (262)
T ss_pred cCCCHHHH----HhC--c--cch---hhhhhcCCCcccceeEEEEEcCCCCEEE
Confidence 86554321 111 1 332 6788777766 3334467777665553
No 8
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=8.6e-25 Score=191.60 Aligned_cols=77 Identities=32% Similarity=0.356 Sum_probs=69.7
Q ss_pred cccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHHHHHHhCCCCCCeEEEeCCeee
Q 026086 129 SVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRKEVEALHPDDSHIVVFSRGVWR 208 (243)
Q Consensus 129 ~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~RI~~~~~~~~~~v~~~~G~~r 208 (243)
-+||||+|+++.+++|||||.||||+|++|.+ +++-|+.||+|..+.|..||.++|| . +.-+| |
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------kAvdmS~DHKPEDevE~~RI~~AGG---~--vtlDG--R 392 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------KAVDMSVDHKPEDEVETNRIHAAGG---Q--VTLDG--R 392 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecCC---------ceeecccCCCcccHHHHHHHHhcCC---e--Eeecc--e
Confidence 48999999999999999999999999999999 8999999999999999999999975 2 34467 9
Q ss_pred ecccccccccccc
Q 026086 209 IKGIIQHLIHQAV 221 (243)
Q Consensus 209 v~g~l~~tr~~g~ 221 (243)
|+|-|..+|++|+
T Consensus 393 VNGGLNLSRA~GD 405 (542)
T KOG0699|consen 393 VNGGLNLSRAFGD 405 (542)
T ss_pred ecCccchhhhhhh
Confidence 9999999987554
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.91 E-value=3.9e-23 Score=176.57 Aligned_cols=180 Identities=28% Similarity=0.319 Sum_probs=137.9
Q ss_pred ccccccCC-CCCCCCcEEEeeCC---CceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhc----CCChHHHHHHHHHHH
Q 026086 38 YSIAVVQA-NSMLEDQGQVFTSP---SATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQ----GGLSAEVIKKAFDAT 109 (243)
Q Consensus 38 ~s~~~~g~-r~~~ED~~~~~~~~---~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~----~~~~~~~l~~af~~~ 109 (243)
+..+..++ |..|||++.+.... ++.+|+|+|||||+..++++++.+.+.+.+..... ...+...|+++|..+
T Consensus 3 ~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (254)
T cd00143 3 AGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRA 82 (254)
T ss_pred eeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 34455555 77899999888655 78999999999999999999999999988766543 233456788889888
Q ss_pred HHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHHHH
Q 026086 110 EEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRKEV 189 (243)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~RI 189 (243)
++.+....... .....+|||++++++.+++++++|+||||+|+++++ .+.++|.||++.++.+..||
T Consensus 83 ~~~l~~~~~~~----~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------~~~~lt~dh~~~~~~~~~~i 149 (254)
T cd00143 83 DEEILEEAQDE----PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------EAVQLTKDHKPVNEEERERI 149 (254)
T ss_pred HHHHHHhhhhc----cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------ceeEcCCCCCCcChHHHHHH
Confidence 88887654321 233568999999999999999999999999999998 79999999999999999999
Q ss_pred HHhCCCCCCeEEEeCCeeeeccccccccccccc-------ccCCceeeec-CCCccc
Q 026086 190 EALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVS-------VTFPFVGFKI-NWRCLF 238 (243)
Q Consensus 190 ~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~-------~~~gd~~~k~-~~~~~f 238 (243)
...++. +. ..+..+...+||++|.. ..|....+++ +..+.|
T Consensus 150 ~~~~~~----~~----~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~i 198 (254)
T cd00143 150 EKAGGR----VS----NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFL 198 (254)
T ss_pred HHcCCc----EE----eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEE
Confidence 998642 11 12566677788877765 2333445566 444433
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.91 E-value=8.2e-23 Score=175.23 Aligned_cols=164 Identities=33% Similarity=0.483 Sum_probs=131.9
Q ss_pred cccccCC-CCCCCCcEEEeeC--CCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCC---ChHHHHHHHHHHHHHH
Q 026086 39 SIAVVQA-NSMLEDQGQVFTS--PSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGG---LSAEVIKKAFDATEEE 112 (243)
Q Consensus 39 s~~~~g~-r~~~ED~~~~~~~--~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~---~~~~~l~~af~~~~~~ 112 (243)
+.+..++ |.+|||++.+... .+..+|+|||||||+.+|+++++.+.+.+.+....... .+.+.|++++..++..
T Consensus 9 ~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (255)
T smart00332 9 GLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEE 88 (255)
T ss_pred EEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHH
Confidence 3344544 8899999988876 78899999999999999999999999998876544332 3567789999999888
Q ss_pred HHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCCCCHHHHHHHHHh
Q 026086 113 FLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNVGVEEVRKEVEAL 192 (243)
Q Consensus 113 ~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~~~~~E~~RI~~~ 192 (243)
+.+...... ....+|||++++++.++++|++|+||||+|+++.+ ...+||.||++.++.|..||...
T Consensus 89 ~~~~~~~~~----~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------~~~~lt~dh~~~~~~~~~~i~~~ 155 (255)
T smart00332 89 ILEELESLE----EDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------KAVQLTEDHKPSNEDERARIEAA 155 (255)
T ss_pred HHHhhhhcc----CCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------ceeEcCCCCCCcCHHHHHHHHHc
Confidence 886544322 33468999999999999999999999999999987 68999999999999999999998
Q ss_pred CCCCCCeEEEeCCeeeecccccccccccccc
Q 026086 193 HPDDSHIVVFSRGVWRIKGIIQHLIHQAVSV 223 (243)
Q Consensus 193 ~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~ 223 (243)
++ .+. .+ +..+...+||++|...
T Consensus 156 ~~----~~~--~~--~~~~~~~lt~~~g~~~ 178 (255)
T smart00332 156 GG----FVI--NG--RVNGVLALSRAIGDFF 178 (255)
T ss_pred CC----EEE--CC--eECCeEecccccCCHh
Confidence 64 222 23 6666778888777553
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.89 E-value=8e-23 Score=195.60 Aligned_cols=179 Identities=22% Similarity=0.232 Sum_probs=119.0
Q ss_pred ccccccCC-CCCCCCcEEEeeC------------CCceEEEEEeCCCchH----HHHHHHHHHHHHHHhhhhhcCCChHH
Q 026086 38 YSIAVVQA-NSMLEDQGQVFTS------------PSATYVGVYDGHGGPE----ASRFITRHLFPFLHKFTTEQGGLSAE 100 (243)
Q Consensus 38 ~s~~~~g~-r~~~ED~~~~~~~------------~~~~lf~VfDGHGG~~----aa~~~~~~l~~~l~~~~~~~~~~~~~ 100 (243)
+..+..|. |+.|||++.+... ....+|+|||||||+. ||+++.+.|.+.+.+..... ....+
T Consensus 378 a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~-~~~~~ 456 (645)
T PRK14559 378 AGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE-LPDEE 456 (645)
T ss_pred EEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc-ccHHH
Confidence 34456676 8899999876531 1346999999999887 45566666665555432211 12356
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCCC
Q 026086 101 VIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHNV 180 (243)
Q Consensus 101 ~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~~ 180 (243)
.++++|..+++.+.+...+.. ......||||++++++.++++|++||||||+|+++++ | .+++||+||++
T Consensus 457 ~L~~ai~~AN~~I~~~~~~~~--~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~---g-----~l~QLT~DHs~ 526 (645)
T PRK14559 457 TIREAIYLANEAIYDLNQQNA--RSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRK---G-----GLEQLTVDHEV 526 (645)
T ss_pred HHHHHHHHHHHHHHHHhhhcc--cccCCCCCceeeeEEEECCEEEEEEecCceEEEEecC---C-----eEEEeCCCCCH
Confidence 799999999999986543221 1133469999999999999999999999999998643 3 79999999999
Q ss_pred CCHHHHHHHHHhCCCCCCeEEEeCCeeeecccccccccccccc----cCCceeeecCCCcccc
Q 026086 181 GVEEVRKEVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSV----TFPFVGFKINWRCLFE 239 (243)
Q Consensus 181 ~~~~E~~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~----~~gd~~~k~~~~~~f~ 239 (243)
.+.+.+..+... ... + | .+...+||++|+.. .|....+++..++.|+
T Consensus 527 ~~~lv~~Gi~~~-------~a~--~--~-p~~~~LTrALG~~~~~~l~Pdi~~~~L~~gD~lL 577 (645)
T PRK14559 527 GQREIQRGVEPQ-------IAY--A--R-PDAYQLTQALGPRDNSAIQPDIQFLEIEEDTLLL 577 (645)
T ss_pred HHHHHHhCCCHH-------HHh--c--C-cccceeeeccCCCCCCcccceEEEEEcCCCCEEE
Confidence 765433221100 000 0 2 12356777777643 3555577777776653
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.74 E-value=1.8e-17 Score=144.54 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=92.3
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhh---------------------------------------cCCChH
Q 026086 59 PSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTE---------------------------------------QGGLSA 99 (243)
Q Consensus 59 ~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~---------------------------------------~~~~~~ 99 (243)
.++.+|.+||||.|+.+|-.+++.|++.|...+.. ......
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 37899999999999999999999988887653221 011133
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCC
Q 026086 100 EVIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHN 179 (243)
Q Consensus 100 ~~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~ 179 (243)
.+|+.||+.+++.+.+... ......|||+++++.--.+||+||.|||||++.+++ .+.+|+.+.+
T Consensus 222 GAlEsAFqemDeqiarer~------~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------eirplS~efT 286 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQ------VWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------EIRPLSKEFT 286 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH------hhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------CeeecccccC
Confidence 5688899888887765432 223467999999999999999999999999999999 7999999998
Q ss_pred CCCHHHHHHHHHh
Q 026086 180 VGVEEVRKEVEAL 192 (243)
Q Consensus 180 ~~~~~E~~RI~~~ 192 (243)
|. .||+|++..
T Consensus 287 Pe--tERqRlQ~L 297 (493)
T KOG1323|consen 287 PE--TERQRLQEL 297 (493)
T ss_pred cH--HHHHHHHHH
Confidence 86 678777554
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.58 E-value=2.7e-14 Score=119.71 Aligned_cols=131 Identities=22% Similarity=0.257 Sum_probs=76.1
Q ss_pred cccCCCCCCCCcEEEeeCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHHH-HHHHHHHHHHHHHHHH--
Q 026086 41 AVVQANSMLEDQGQVFTSPSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAEV-IKKAFDATEEEFLHLV-- 117 (243)
Q Consensus 41 ~~~g~r~~~ED~~~~~~~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~-l~~af~~~~~~~~~~~-- 117 (243)
+..+.+.+|||++.+...++..+++|+||+||...++.++..+...+.+.+.......... ....+..+.+++....
T Consensus 4 sh~~~~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T PF13672_consen 4 SHRGRGAPNQDAFGIRTDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRA 83 (212)
T ss_dssp ---TTSSS--EEEEEE-TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccCCCCCCCCCEEeeeCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhh
Confidence 4457789999999988888888999999999766555555555554444333332222222 3344444444444321
Q ss_pred -HhhccCCCCcccccceEEEEEEECCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCCC
Q 026086 118 -KRSWSARPQIASVGSCCLVGVIAKDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDHN 179 (243)
Q Consensus 118 -~~~~~~~~~~~~sGtTa~v~~i~~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH~ 179 (243)
.............+||++++++.++.++++|+||||+|+...+ + .+..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~---g-----~~~~l~~~~~ 138 (212)
T PF13672_consen 84 FQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRN---G-----EIQQLTDDHS 138 (212)
T ss_dssp --HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEET---T-----EEEE-S---B
T ss_pred hhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECC---C-----EEEEcCCCcc
Confidence 0000012234467999999999999999999999999776544 3 7889999886
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.17 E-value=2.7e-10 Score=99.41 Aligned_cols=101 Identities=25% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCCCCcEEEeeCCCceEEEEEeCCCchH-----HHHHHHHHHHHHHHh---hhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 026086 47 SMLEDQGQVFTSPSATYVGVYDGHGGPE-----ASRFITRHLFPFLHK---FTTEQGGLSAEVIKKAFDATEEEFLHLVK 118 (243)
Q Consensus 47 ~~~ED~~~~~~~~~~~lf~VfDGHGG~~-----aa~~~~~~l~~~l~~---~~~~~~~~~~~~l~~af~~~~~~~~~~~~ 118 (243)
+.=||++++..+++..+.|||||.||++ .+.| +++|.+...+ .....+..+...|.++|.++-..
T Consensus 89 ~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~------ 161 (330)
T KOG1379|consen 89 KGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ------ 161 (330)
T ss_pred CCCCcceeeccCcccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc------
Confidence 3679999999999999999999999988 4444 4444444333 22333445677788887654321
Q ss_pred hhccCCCCcccccceEEEEEEE--CCEEEEEecccCcEEEEeee
Q 026086 119 RSWSARPQIASVGSCCLVGVIA--KDVLYVANLGDSRAVLGRRV 160 (243)
Q Consensus 119 ~~~~~~~~~~~sGtTa~v~~i~--~~~l~vanvGDSRa~l~~~~ 160 (243)
......++||+++++. +.+|++||+|||-..+.|++
T Consensus 162 ------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G 199 (330)
T KOG1379|consen 162 ------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG 199 (330)
T ss_pred ------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC
Confidence 1223457788888887 88999999999999999998
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.06 E-value=2.1e-09 Score=88.63 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=77.2
Q ss_pred cCCCCCCCCcEEEeeCC-CceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhc
Q 026086 43 VQANSMLEDQGQVFTSP-SATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRSW 121 (243)
Q Consensus 43 ~g~r~~~ED~~~~~~~~-~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~~ 121 (243)
+.......|.+-+...+ +..+++|+||||+...|.+++..+...+.+..... ..+.+.+..+++.+...
T Consensus 11 ~p~~~~~GD~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-----~~~~~~l~~~n~~l~~~----- 80 (193)
T smart00331 11 EDATQVGGDFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-----ISLSQILERLNRAIYEN----- 80 (193)
T ss_pred cchHhcCccEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhc-----
Confidence 34456678888777544 47899999999988888888888888887765432 12445566666666532
Q ss_pred cCCCCcccccceEEEEEE--ECCEEEEEecccCcEEEEee
Q 026086 122 SARPQIASVGSCCLVGVI--AKDVLYVANLGDSRAVLGRR 159 (243)
Q Consensus 122 ~~~~~~~~sGtTa~v~~i--~~~~l~vanvGDSRa~l~~~ 159 (243)
....+++|++++++ ..++++++|+||+|+++++.
T Consensus 81 ----~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~ 116 (193)
T smart00331 81 ----GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRA 116 (193)
T ss_pred ----CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEEC
Confidence 12357999999888 68899999999999999984
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.88 E-value=7.7e-09 Score=101.20 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCC----CCCCCCccccccCCCCCCCCCccccccCC-CCCCCCcEEEe---eCCCceEEEEEeCCCchH
Q 026086 3 EMCARPLERCFGRG----DGGGGDGLLWHMDLKSHASGDYSIAVVQA-NSMLEDQGQVF---TSPSATYVGVYDGHGGPE 74 (243)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~g~-r~~~ED~~~~~---~~~~~~lf~VfDGHGG~~ 74 (243)
+.|+.+ +|+... .++....++|+ |.++..-+ |+++==+.... .....+.||.|||-+-.+
T Consensus 497 ~~l~~l--~~~~i~~~~~~d~~~n~~~~t----------~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~ 564 (1081)
T KOG0618|consen 497 KVLKSL--SQMDITLNNTPDGNVNAFLWT----------YGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSR 564 (1081)
T ss_pred HHhhhh--hheecccCCCCccccceehee----------eccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchh
Confidence 344444 455443 45556666776 55565544 43322221111 223467999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEEEC--------CEEEE
Q 026086 75 ASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVIAK--------DVLYV 146 (243)
Q Consensus 75 aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~~--------~~l~v 146 (243)
+..+++.++..++.+......+ ..+.|..+|..+++++-++-+ .-|..++.+.|.. .++++
T Consensus 565 v~~~vq~~ma~~L~eev~~~~~-et~~mr~~fl~~~rklg~~g~----------~lg~~~~~~~i~~d~~~~asS~~l~~ 633 (1081)
T KOG0618|consen 565 VLSLVQDTMASYLAEEVQLYGN-ETEQMRNTFLRLNRKLGEEGQ----------VLGGSVVLCQIVEDSLSPASSKTLFA 633 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHhhhhhhhhc----------cccchhhheeecccccCcccchhhhH
Confidence 9999999999999987766554 456699999999999864322 1245555555543 47899
Q ss_pred EecccCcEEEEeeeCCCCcccceeeecCCCCC-CCCCHHHHHHHHHhCCCCCCeEEEeCCeeeecccccccccccccccC
Q 026086 147 ANLGDSRAVLGRRVSENRKNMLVVAERLSVDH-NVGVEEVRKEVEALHPDDSHIVVFSRGVWRIKGIIQHLIHQAVSVTF 225 (243)
Q Consensus 147 anvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH-~~~~~~E~~RI~~~~~~~~~~v~~~~G~~rv~g~l~~tr~~g~~~~~ 225 (243)
||+|+|.+++++++ +..++|+.. ...+++|.+||...++ ++..+| +++|....||.+|-+..+
T Consensus 634 Anvg~c~avls~ng---------~~~p~t~~~~~~v~~eE~~RI~~~~g-----~i~ed~--k~ngvt~~tR~iG~~~l~ 697 (1081)
T KOG0618|consen 634 ANVGTCMAVLSRNG---------KPLPTTRSPMLEVDREEYKRIVDSKG-----FITEDN--KLNGVTSSTRAIGPFSLF 697 (1081)
T ss_pred hhhccchhhhhhcC---------CcCcccccccccCCHHHHHHHHHhcC-----eecCCC--eeeceeeeeeeccccccc
Confidence 99999999999999 677777764 5569999999999965 344466 899999999987766555
Q ss_pred C
Q 026086 226 P 226 (243)
Q Consensus 226 g 226 (243)
+
T Consensus 698 P 698 (1081)
T KOG0618|consen 698 P 698 (1081)
T ss_pred c
Confidence 4
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=97.94 E-value=0.00018 Score=71.62 Aligned_cols=163 Identities=17% Similarity=0.057 Sum_probs=96.3
Q ss_pred CccccccCCCCCCCCCccccccCCCCCCCCcEEEee-CCCceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHH
Q 026086 22 DGLLWHMDLKSHASGDYSIAVVQANSMLEDQGQVFT-SPSATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAE 100 (243)
Q Consensus 22 ~~~~~~~~~~~~~~~~~s~~~~g~r~~~ED~~~~~~-~~~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~ 100 (243)
-.+.+.+..+..-.-.+....++++..+.|.+.+.. ++...+++|+||+|....|...+......+.+..... . +
T Consensus 540 ~~i~f~e~~~~~~~~g~a~~~k~g~~vsGD~y~~~~l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g-~-~-- 615 (764)
T TIGR02865 540 CHLTFEETPKYHVSTGVARAAKDGELVSGDSYSFGKLSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG-F-D-- 615 (764)
T ss_pred EEEEEecCCceeehhhHHHhcCCCCcccCceEEEEEECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC-C-C--
Confidence 344444444332222233344566789999998886 4445788999999955544455666555555544322 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEEE--CCEEEEEecccCcEEEEeeeCCCCcccceeeecCCCCC
Q 026086 101 VIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVIA--KDVLYVANLGDSRAVLGRRVSENRKNMLVVAERLSVDH 178 (243)
Q Consensus 101 ~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i~--~~~l~vanvGDSRa~l~~~~~~~g~~~~~~~~~LT~dH 178 (243)
.+.++..+|..+... ....+.+|+.++++. ..++.++|+|+++.++.+++ .+.+++..+
T Consensus 616 -~~~ai~~lN~~L~~~---------~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------~v~~i~s~~ 676 (764)
T TIGR02865 616 -REVAIKTVNSILSLR---------STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------KVEVIRSSN 676 (764)
T ss_pred -HHHHHHHHHHHHHhC---------CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------EEEEecCCC
Confidence 244566666655421 112357898888884 68899999999999998876 677766654
Q ss_pred CCCC---HHHH--HHHHHhCCCCCCeEEEeCCeeee
Q 026086 179 NVGV---EEVR--KEVEALHPDDSHIVVFSRGVWRI 209 (243)
Q Consensus 179 ~~~~---~~E~--~RI~~~~~~~~~~v~~~~G~~rv 209 (243)
-|-- ..+. .+. ...| ...++..++|++..
T Consensus 677 lPlGil~~~~~~~~~~-~L~~-GD~Lll~SDGv~E~ 710 (764)
T TIGR02865 677 LPIGILDEVDVELVRK-KLKN-GDLIVMVSDGVLEG 710 (764)
T ss_pred ceeEeccCCccceEEE-EeCC-CCEEEEECCCCCcC
Confidence 4321 1111 111 1111 14567888887754
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.18 E-value=0.01 Score=48.33 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=57.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccceEEEEEE
Q 026086 60 SATYVGVYDGHGGPEASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRSWSARPQIASVGSCCLVGVI 139 (243)
Q Consensus 60 ~~~lf~VfDGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~~~~~~~~~~sGtTa~v~~i 139 (243)
+..++.|+|+.|-.-.|.+.+..+...+........ . ..+.+..+++.+...... ....+|++++.+
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~-~----p~~~l~~ln~~l~~~~~~--------~~~~~t~~~~~~ 69 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL-D----PEELLEALNRRLYRDLKG--------DNRYATACYAII 69 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT-S----HHHHHHHHHHHHHHHTTT--------TSTTEEEEEEEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHHHHHHHhhh--------ccccceEEEEEe
Confidence 457899999999444455556666666665543222 2 334455555555332111 135677877776
Q ss_pred E--CCEEEEEecccCcEEEEeee
Q 026086 140 A--KDVLYVANLGDSRAVLGRRV 160 (243)
Q Consensus 140 ~--~~~l~vanvGDSRa~l~~~~ 160 (243)
. .++++++|+|++++++++.+
T Consensus 70 d~~~~~l~~~~aG~~~~l~~~~~ 92 (193)
T PF07228_consen 70 DPETGTLTYANAGHPPPLLLRPG 92 (193)
T ss_dssp ETTTTEEEEEEESSSEEEEEETT
T ss_pred cccceEEEEeCCCCCCEEEEecc
Confidence 4 67899999999999999994
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=74.95 E-value=58 Score=28.62 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=52.2
Q ss_pred CCCCCCcEEEee-CCCceEEEEEe--CCCchH-HHHHHHHHHHH-HHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 026086 46 NSMLEDQGQVFT-SPSATYVGVYD--GHGGPE-ASRFITRHLFP-FLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRS 120 (243)
Q Consensus 46 r~~~ED~~~~~~-~~~~~lf~VfD--GHGG~~-aa~~~~~~l~~-~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~ 120 (243)
....-|.+-++. +++...|-++| ||||+. .|.+....+.. .+......... ......+.+..+|+.+.+.
T Consensus 147 ~~~~GD~~d~~~l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~-~~~~p~~~l~~lN~~l~~~---- 221 (303)
T PRK10693 147 ADKPGLVLDIAALSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQ-RLPELGALLKQVNHLLRQA---- 221 (303)
T ss_pred CCCCccEEeeeecCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhccccc-ccCCHHHHHHHHHHHHHhc----
Confidence 344567765553 44555555655 888666 33344444344 44332111110 0001233455666665531
Q ss_pred ccCCCCcccccceEEEEEEE--CCEEEEEecccCcEEE
Q 026086 121 WSARPQIASVGSCCLVGVIA--KDVLYVANLGDSRAVL 156 (243)
Q Consensus 121 ~~~~~~~~~sGtTa~v~~i~--~~~l~vanvGDSRa~l 156 (243)
... . -.|++..++. .+++..+|.|-...++
T Consensus 222 --~~~---~-~~t~~~~~~d~~~~~l~~~~AGhp~~~~ 253 (303)
T PRK10693 222 --NLP---G-QFPLLVGYYHRELKNLILVSAGLNATLN 253 (303)
T ss_pred --CCC---c-eeeEEEEEEEcCCCeEEEEeCCCCCEEe
Confidence 000 1 1477776664 5679999999999875
No 20
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=68.30 E-value=58 Score=28.15 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCC-chHHHHHHHHHHHHHHHhhhhh-----cCCChHHHHHHHHHHHHHHH--HHHHHhhccCCCCcccccceEEEEEEE
Q 026086 69 GHG-GPEASRFITRHLFPFLHKFTTE-----QGGLSAEVIKKAFDATEEEF--LHLVKRSWSARPQIASVGSCCLVGVIA 140 (243)
Q Consensus 69 GHG-G~~aa~~~~~~l~~~l~~~~~~-----~~~~~~~~l~~af~~~~~~~--~~~~~~~~~~~~~~~~sGtTa~v~~i~ 140 (243)
||- |..||+.+.+.|.+.+.+.... ......+.+..+=..+...- .+....+...-.-....+..+.++.+-
T Consensus 49 Gh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vG 128 (262)
T COG0631 49 GHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVG 128 (262)
T ss_pred chhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEcc
Confidence 999 5558889999999987762110 11123333333322222221 111111111111112356678888888
Q ss_pred CCEEEEEecccCcEEEEeee
Q 026086 141 KDVLYVANLGDSRAVLGRRV 160 (243)
Q Consensus 141 ~~~l~vanvGDSRa~l~~~~ 160 (243)
+.++|+..-| .+...+.+
T Consensus 129 DSR~yl~~~~--~~~~lT~D 146 (262)
T COG0631 129 DSRAYLLRDG--ELKQLTED 146 (262)
T ss_pred CCeEEEEcCC--ceEEeccC
Confidence 9999999988 66666555
No 21
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=30.07 E-value=61 Score=28.58 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=18.6
Q ss_pred cccceEEEEEEECCEEEEEecccC
Q 026086 129 SVGSCCLVGVIAKDVLYVANLGDS 152 (243)
Q Consensus 129 ~sGtTa~v~~i~~~~l~vanvGDS 152 (243)
.+|||.+++ +.++.+|..|+|-+
T Consensus 131 LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEE-EETTEEEEEEEEES
T ss_pred cCCCEEEEE-EcCCeEEEEEcCCC
Confidence 478888775 78999999999986
No 22
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=26.73 E-value=4.7e+02 Score=23.50 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=60.8
Q ss_pred cCCCCCCCCcEEEee-CCCceEEEEEeCCC-chHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 026086 43 VQANSMLEDQGQVFT-SPSATYVGVYDGHG-GPEASRFITRHLFPFLHKFTTEQGGLSAEVIKKAFDATEEEFLHLVKRS 120 (243)
Q Consensus 43 ~g~r~~~ED~~~~~~-~~~~~lf~VfDGHG-G~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~~~~~~~~~~~~ 120 (243)
...+.---|.+-+.. +.....++|.|..| |-.+|-. +......+........-.+.+. +..+++-+...
T Consensus 156 ~~a~~vGGD~yd~~~~~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~~~----l~~~n~~~~~~---- 226 (367)
T COG2208 156 VPASEVGGDYYDFIQLGEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPADV----LETLNRVLKQN---- 226 (367)
T ss_pred eEHHHcCCceEEEEEECCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHHHH----HHHHHHHHHhc----
Confidence 333334567765553 44678899999999 6666555 4444444443333222333333 33334333321
Q ss_pred ccCCCCcccccceEEEEEEE--CCEEEEEecccCcEEEEeee
Q 026086 121 WSARPQIASVGSCCLVGVIA--KDVLYVANLGDSRAVLGRRV 160 (243)
Q Consensus 121 ~~~~~~~~~sGtTa~v~~i~--~~~l~vanvGDSRa~l~~~~ 160 (243)
.. ..+-+|....++. ...+..+|+|---+++.+.+
T Consensus 227 ----~~-~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~ 263 (367)
T COG2208 227 ----LE-EDMFVTLFLGVYDLDSGELTYSNAGHEPALILSAD 263 (367)
T ss_pred ----cc-CCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcC
Confidence 11 1145677666664 67899999999999999887
No 23
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=24.04 E-value=21 Score=23.85 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=14.1
Q ss_pred hhhhhhhhhhhccCCCCC
Q 026086 2 LEMCARPLERCFGRGDGG 19 (243)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (243)
.++.++..++||.+|-..
T Consensus 14 ~~~~~~~t~~Cf~kCv~~ 31 (66)
T PF02953_consen 14 QELFNKLTERCFDKCVTK 31 (66)
T ss_dssp HHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 467889999999999554
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.33 E-value=1.6e+02 Score=15.87 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.1
Q ss_pred EECCEEEEEecccCcEEEE
Q 026086 139 IAKDVLYVANLGDSRAVLG 157 (243)
Q Consensus 139 i~~~~l~vanvGDSRa~l~ 157 (243)
-.++.+||+-.+..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3788999999988887653
No 25
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.22 E-value=1.5e+02 Score=16.88 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.5
Q ss_pred CCEEEEEecccCcEEEEee
Q 026086 141 KDVLYVANLGDSRAVLGRR 159 (243)
Q Consensus 141 ~~~l~vanvGDSRa~l~~~ 159 (243)
+++||++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4678999988887777644
Done!