Query 026087
Match_columns 243
No_of_seqs 131 out of 1663
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 2.2E-52 4.7E-57 357.6 22.0 212 7-242 1-213 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 2.4E-48 5.2E-53 327.3 20.9 233 8-242 1-233 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 7.4E-48 1.6E-52 319.9 21.7 238 5-242 3-240 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 2.9E-46 6.3E-51 311.6 20.3 226 1-243 1-230 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.3E-44 2.8E-49 302.4 17.7 211 8-242 3-217 (354)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 1E-40 2.3E-45 295.1 24.6 232 10-242 2-233 (368)
7 cd08301 alcohol_DH_plants Plan 100.0 1.5E-40 3.2E-45 294.1 24.4 235 8-242 1-235 (369)
8 PLN02740 Alcohol dehydrogenase 100.0 2.1E-40 4.5E-45 294.4 24.2 238 5-242 6-246 (381)
9 cd08300 alcohol_DH_class_III c 100.0 3.8E-40 8.2E-45 291.5 24.6 234 8-242 1-234 (368)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 2.1E-39 4.5E-44 287.0 23.1 231 10-242 1-239 (371)
11 PLN02827 Alcohol dehydrogenase 100.0 2E-38 4.3E-43 281.5 24.4 234 5-242 8-241 (378)
12 cd08277 liver_alcohol_DH_like 100.0 2.4E-38 5.1E-43 279.7 24.4 231 9-242 2-232 (365)
13 TIGR03451 mycoS_dep_FDH mycoth 100.0 2.9E-38 6.3E-43 278.4 22.4 224 9-242 1-224 (358)
14 cd08239 THR_DH_like L-threonin 100.0 3.8E-38 8.2E-43 275.3 22.0 210 10-242 1-211 (339)
15 TIGR02819 fdhA_non_GSH formald 100.0 2.1E-37 4.5E-42 276.1 22.4 215 9-241 2-232 (393)
16 PLN02586 probable cinnamyl alc 100.0 3.7E-37 8E-42 271.7 22.2 221 6-242 9-231 (360)
17 TIGR02822 adh_fam_2 zinc-bindi 100.0 5.8E-37 1.2E-41 267.4 22.1 206 13-242 2-212 (329)
18 COG1063 Tdh Threonine dehydrog 100.0 4E-37 8.8E-42 270.2 20.9 211 10-241 1-216 (350)
19 PRK09880 L-idonate 5-dehydroge 100.0 5.6E-37 1.2E-41 268.8 20.9 212 8-242 3-217 (343)
20 cd08299 alcohol_DH_class_I_II_ 100.0 1.6E-36 3.5E-41 268.8 23.8 232 8-241 6-237 (373)
21 cd08230 glucose_DH Glucose deh 100.0 1.6E-36 3.5E-41 266.9 21.0 210 10-242 1-222 (355)
22 COG0604 Qor NADPH:quinone redu 100.0 2.9E-36 6.4E-41 261.9 19.2 186 10-242 1-190 (326)
23 PLN02514 cinnamyl-alcohol dehy 100.0 2.4E-35 5.2E-40 259.9 23.2 220 6-241 6-227 (357)
24 PLN02178 cinnamyl-alcohol dehy 100.0 1.4E-35 3.1E-40 262.8 21.8 215 12-242 9-226 (375)
25 cd05279 Zn_ADH1 Liver alcohol 100.0 6.7E-35 1.4E-39 257.7 24.3 231 10-242 1-231 (365)
26 TIGR03201 dearomat_had 6-hydro 100.0 4.4E-35 9.5E-40 257.4 20.7 205 13-242 2-213 (349)
27 PRK10309 galactitol-1-phosphat 100.0 7E-34 1.5E-38 249.3 21.4 207 10-242 1-208 (347)
28 cd08237 ribitol-5-phosphate_DH 100.0 6.6E-34 1.4E-38 249.2 20.7 203 9-241 2-211 (341)
29 cd08285 NADP_ADH NADP(H)-depen 100.0 1.7E-33 3.7E-38 247.1 22.7 212 10-242 1-214 (351)
30 cd08278 benzyl_alcohol_DH Benz 100.0 1.6E-33 3.4E-38 249.0 22.4 232 8-242 1-234 (365)
31 cd08231 MDR_TM0436_like Hypoth 100.0 1.6E-33 3.4E-38 248.3 22.0 217 11-242 2-225 (361)
32 cd08296 CAD_like Cinnamyl alco 100.0 2.1E-33 4.6E-38 245.0 22.4 209 10-242 1-210 (333)
33 PRK10083 putative oxidoreducta 100.0 2.1E-33 4.6E-38 245.1 22.2 208 10-242 1-209 (339)
34 cd08233 butanediol_DH_like (2R 100.0 3.7E-33 8E-38 245.0 21.5 209 10-242 1-220 (351)
35 cd05278 FDH_like Formaldehyde 100.0 2.1E-32 4.5E-37 239.4 23.0 212 10-242 1-215 (347)
36 cd08283 FDH_like_1 Glutathione 100.0 3.7E-32 8.1E-37 241.9 22.9 224 10-239 1-229 (386)
37 cd08279 Zn_ADH_class_III Class 100.0 5.2E-32 1.1E-36 239.0 23.2 229 10-241 1-229 (363)
38 cd05284 arabinose_DH_like D-ar 100.0 6E-32 1.3E-36 236.0 21.2 210 10-242 1-215 (340)
39 cd08256 Zn_ADH2 Alcohol dehydr 100.0 6.5E-32 1.4E-36 237.0 21.5 209 10-241 1-221 (350)
40 cd08260 Zn_ADH6 Alcohol dehydr 100.0 1.7E-31 3.8E-36 233.7 23.4 210 10-242 1-212 (345)
41 PRK13771 putative alcohol dehy 100.0 1.2E-31 2.5E-36 233.6 21.9 205 10-238 1-206 (334)
42 cd08246 crotonyl_coA_red croto 100.0 1E-31 2.3E-36 239.4 21.3 214 6-241 9-240 (393)
43 KOG1197 Predicted quinone oxid 100.0 4.4E-32 9.5E-37 220.0 17.0 188 5-242 4-194 (336)
44 cd08282 PFDH_like Pseudomonas 100.0 2.1E-31 4.5E-36 236.2 23.0 217 10-241 1-223 (375)
45 cd08286 FDH_like_ADH2 formalde 100.0 2.1E-31 4.7E-36 233.1 22.6 211 10-242 1-214 (345)
46 cd08259 Zn_ADH5 Alcohol dehydr 100.0 3E-31 6.5E-36 230.1 22.6 208 10-241 1-209 (332)
47 cd08240 6_hydroxyhexanoate_dh_ 100.0 1.9E-31 4.1E-36 234.0 21.4 210 10-241 1-222 (350)
48 cd08284 FDH_like_2 Glutathione 100.0 4.2E-31 9.1E-36 231.0 22.1 211 10-241 1-214 (344)
49 PRK09422 ethanol-active dehydr 100.0 5.1E-31 1.1E-35 229.9 21.8 208 10-242 1-210 (338)
50 cd05283 CAD1 Cinnamyl alcohol 100.0 6.5E-31 1.4E-35 229.7 21.1 215 11-242 1-216 (337)
51 TIGR01751 crot-CoA-red crotony 100.0 7.5E-31 1.6E-35 234.4 21.5 213 7-241 5-236 (398)
52 cd08263 Zn_ADH10 Alcohol dehyd 100.0 1.3E-30 2.8E-35 230.3 21.8 230 10-242 1-235 (367)
53 cd08298 CAD2 Cinnamyl alcohol 100.0 1.8E-30 3.8E-35 225.7 22.2 209 10-242 1-214 (329)
54 cd08238 sorbose_phosphate_red 100.0 1.1E-30 2.3E-35 234.3 21.2 197 8-238 1-222 (410)
55 PLN02702 L-idonate 5-dehydroge 100.0 2.2E-30 4.9E-35 228.6 22.9 209 9-241 17-228 (364)
56 cd08264 Zn_ADH_like2 Alcohol d 100.0 2.7E-30 5.9E-35 224.2 21.8 203 10-241 1-205 (325)
57 cd08242 MDR_like Medium chain 100.0 3.8E-30 8.2E-35 222.8 21.5 202 10-242 1-202 (319)
58 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 5.8E-30 1.3E-34 222.7 22.0 209 10-241 1-211 (338)
59 PRK05396 tdh L-threonine 3-deh 100.0 4.2E-30 9E-35 224.7 21.1 208 10-242 1-211 (341)
60 TIGR01202 bchC 2-desacetyl-2-h 100.0 2.9E-30 6.4E-35 223.2 19.0 184 9-238 1-188 (308)
61 cd08245 CAD Cinnamyl alcohol d 100.0 7.8E-30 1.7E-34 221.7 21.5 208 11-242 1-209 (330)
62 cd08262 Zn_ADH8 Alcohol dehydr 100.0 7.8E-30 1.7E-34 222.8 20.8 196 10-241 1-208 (341)
63 cd08265 Zn_ADH3 Alcohol dehydr 100.0 1.1E-29 2.5E-34 225.8 21.7 208 10-242 29-251 (384)
64 cd08261 Zn_ADH7 Alcohol dehydr 100.0 1.5E-29 3.2E-34 220.8 21.8 206 10-242 1-206 (337)
65 cd08287 FDH_like_ADH3 formalde 100.0 1.7E-29 3.7E-34 221.0 21.6 208 10-242 1-216 (345)
66 KOG0025 Zn2+-binding dehydroge 100.0 7.7E-30 1.7E-34 210.2 17.1 189 5-242 15-212 (354)
67 cd08235 iditol_2_DH_like L-idi 100.0 2.6E-29 5.5E-34 219.6 21.5 207 10-241 1-212 (343)
68 cd05285 sorbitol_DH Sorbitol d 100.0 2.1E-29 4.6E-34 220.5 20.6 207 12-242 1-210 (343)
69 cd08266 Zn_ADH_like1 Alcohol d 100.0 3.7E-29 8.1E-34 217.1 21.7 209 10-241 1-213 (342)
70 cd08258 Zn_ADH4 Alcohol dehydr 100.0 9.8E-29 2.1E-33 213.4 22.7 209 10-242 1-213 (306)
71 cd08232 idonate-5-DH L-idonate 100.0 4.6E-29 9.9E-34 217.8 20.8 208 14-241 2-212 (339)
72 cd08297 CAD3 Cinnamyl alcohol 100.0 9.9E-29 2.1E-33 215.8 22.5 209 10-242 1-213 (341)
73 cd08234 threonine_DH_like L-th 100.0 1.1E-28 2.3E-33 214.8 21.7 206 10-241 1-206 (334)
74 cd08236 sugar_DH NAD(P)-depend 100.0 1.2E-28 2.7E-33 215.4 20.8 206 10-241 1-206 (343)
75 cd08291 ETR_like_1 2-enoyl thi 100.0 6.5E-29 1.4E-33 215.8 18.9 182 10-242 1-191 (324)
76 cd05281 TDH Threonine dehydrog 100.0 3E-28 6.4E-33 213.1 21.0 208 10-242 1-211 (341)
77 TIGR03366 HpnZ_proposed putati 100.0 5.9E-29 1.3E-33 212.2 15.1 161 66-242 1-168 (280)
78 cd08292 ETR_like_2 2-enoyl thi 100.0 3.4E-28 7.3E-33 210.6 19.9 181 10-241 1-186 (324)
79 TIGR02817 adh_fam_1 zinc-bindi 100.0 2.1E-28 4.6E-33 213.1 18.2 185 11-242 1-197 (336)
80 cd08274 MDR9 Medium chain dehy 100.0 7E-28 1.5E-32 211.0 20.6 199 10-241 1-223 (350)
81 cd08293 PTGR2 Prostaglandin re 100.0 1.5E-27 3.3E-32 208.7 20.0 170 22-242 23-204 (345)
82 TIGR00692 tdh L-threonine 3-de 100.0 1.9E-27 4E-32 208.0 19.6 202 16-242 5-209 (340)
83 cd08290 ETR 2-enoyl thioester 100.0 1.9E-27 4.1E-32 207.6 18.4 184 10-242 1-198 (341)
84 PRK10754 quinone oxidoreductas 100.0 4.7E-27 1E-31 204.0 19.4 184 9-241 1-187 (327)
85 cd05280 MDR_yhdh_yhfp Yhdh and 100.0 1.5E-26 3.3E-31 200.1 20.1 187 10-242 1-194 (325)
86 cd08295 double_bond_reductase_ 99.9 1.1E-26 2.5E-31 202.9 18.9 181 9-242 7-200 (338)
87 cd08276 MDR7 Medium chain dehy 99.9 4.2E-26 9.2E-31 197.9 21.9 203 10-241 1-206 (336)
88 cd08294 leukotriene_B4_DH_like 99.9 2.5E-26 5.4E-31 199.4 20.1 175 9-242 2-191 (329)
89 PLN03154 putative allyl alcoho 99.9 4.1E-26 9E-31 200.5 20.9 185 5-242 4-207 (348)
90 PTZ00354 alcohol dehydrogenase 99.9 3.9E-26 8.5E-31 198.1 20.4 183 9-241 1-187 (334)
91 TIGR02825 B4_12hDH leukotriene 99.9 3.5E-26 7.6E-31 198.8 19.9 162 22-242 19-186 (325)
92 cd08250 Mgc45594_like Mgc45594 99.9 7.8E-26 1.7E-30 196.4 20.1 180 9-241 1-186 (329)
93 cd05188 MDR Medium chain reduc 99.9 4.8E-26 1E-30 191.4 18.0 180 36-242 1-181 (271)
94 cd08248 RTN4I1 Human Reticulon 99.9 5.3E-26 1.2E-30 199.1 18.9 184 10-241 1-208 (350)
95 cd08252 AL_MDR Arginate lyase 99.9 8.2E-26 1.8E-30 196.7 19.5 185 10-241 1-197 (336)
96 cd08243 quinone_oxidoreductase 99.9 1.2E-25 2.6E-30 193.7 19.4 186 10-241 1-189 (320)
97 cd08249 enoyl_reductase_like e 99.9 5.3E-26 1.2E-30 198.9 17.2 188 10-241 1-200 (339)
98 cd08270 MDR4 Medium chain dehy 99.9 1.9E-25 4.2E-30 191.7 20.4 177 10-241 1-179 (305)
99 cd08289 MDR_yhfp_like Yhfp put 99.9 1.5E-25 3.2E-30 194.3 19.6 186 10-241 1-193 (326)
100 cd08244 MDR_enoyl_red Possible 99.9 2.4E-25 5.1E-30 192.6 20.6 183 10-241 1-189 (324)
101 TIGR02823 oxido_YhdH putative 99.9 2.7E-25 5.9E-30 192.5 20.8 185 11-241 1-192 (323)
102 cd08288 MDR_yhdh Yhdh putative 99.9 2.8E-25 6E-30 192.4 20.6 187 10-242 1-194 (324)
103 cd08273 MDR8 Medium chain dehy 99.9 8.7E-25 1.9E-29 189.7 20.2 181 10-241 1-185 (331)
104 cd05276 p53_inducible_oxidored 99.9 2.1E-24 4.5E-29 185.3 19.6 182 10-241 1-186 (323)
105 cd08253 zeta_crystallin Zeta-c 99.9 2.2E-24 4.7E-29 185.5 19.6 187 10-241 1-191 (325)
106 cd08271 MDR5 Medium chain dehy 99.9 3E-24 6.4E-29 185.4 20.4 184 10-241 1-187 (325)
107 cd08247 AST1_like AST1 is a cy 99.9 2.4E-24 5.2E-29 189.1 19.9 187 10-241 1-199 (352)
108 cd05282 ETR_like 2-enoyl thioe 99.9 4.1E-24 8.8E-29 184.8 18.0 171 22-242 14-186 (323)
109 cd08272 MDR6 Medium chain dehy 99.9 6.2E-24 1.3E-28 183.1 19.0 186 10-241 1-190 (326)
110 cd08269 Zn_ADH9 Alcohol dehydr 99.9 5.6E-24 1.2E-28 183.1 18.0 171 17-241 3-176 (312)
111 cd05286 QOR2 Quinone oxidoredu 99.9 2.1E-23 4.5E-28 178.8 20.1 180 11-241 1-183 (320)
112 KOG1198 Zinc-binding oxidoredu 99.9 1.7E-23 3.6E-28 182.7 17.0 171 22-242 20-205 (347)
113 cd08268 MDR2 Medium chain dehy 99.9 5.5E-23 1.2E-27 177.2 20.0 187 10-241 1-191 (328)
114 cd05289 MDR_like_2 alcohol deh 99.9 3.7E-23 8E-28 176.8 18.3 183 10-240 1-189 (309)
115 TIGR02824 quinone_pig3 putativ 99.9 9.3E-23 2E-27 175.5 19.7 182 10-241 1-186 (325)
116 PF08240 ADH_N: Alcohol dehydr 99.9 5.6E-24 1.2E-28 156.7 9.7 108 34-163 1-109 (109)
117 cd08267 MDR1 Medium chain dehy 99.9 9.1E-23 2E-27 175.6 17.7 171 23-241 15-189 (319)
118 cd05288 PGDH Prostaglandin deh 99.9 3.4E-22 7.4E-27 173.4 19.7 177 10-241 2-193 (329)
119 cd08251 polyketide_synthase po 99.9 2E-22 4.4E-27 171.9 17.6 164 29-241 2-167 (303)
120 cd08241 QOR1 Quinone oxidoredu 99.9 7.2E-22 1.6E-26 169.7 19.9 181 10-241 1-186 (323)
121 COG2130 Putative NADP-dependen 99.9 4.1E-22 8.9E-27 166.0 16.0 167 22-242 27-199 (340)
122 cd08275 MDR3 Medium chain dehy 99.9 4.8E-21 1.1E-25 166.1 19.8 180 11-241 1-185 (337)
123 cd05195 enoyl_red enoyl reduct 99.9 2.6E-21 5.5E-26 163.5 16.5 152 35-239 1-153 (293)
124 smart00829 PKS_ER Enoylreducta 99.9 1.9E-20 4.1E-25 158.1 15.8 148 39-240 2-150 (288)
125 cd08255 2-desacetyl-2-hydroxye 99.8 3.7E-18 8E-23 144.8 12.9 129 56-239 14-142 (277)
126 KOG1196 Predicted NAD-dependen 99.7 1.9E-15 4.2E-20 125.9 17.8 163 23-241 25-201 (343)
127 KOG1202 Animal-type fatty acid 99.5 4.5E-14 9.8E-19 134.3 11.5 157 22-238 1429-1596(2376)
128 PRK09424 pntA NAD(P) transhydr 98.1 6.5E-06 1.4E-10 75.6 7.3 50 191-241 161-210 (509)
129 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00011 2.4E-09 65.9 7.5 58 183-241 189-247 (413)
130 TIGR00561 pntA NAD(P) transhyd 97.5 0.00034 7.3E-09 64.3 7.0 50 192-242 161-210 (511)
131 TIGR01035 hemA glutamyl-tRNA r 97.4 3.8E-06 8.1E-11 75.8 -6.4 133 66-240 89-226 (417)
132 PRK00517 prmA ribosomal protei 97.2 0.0019 4E-08 54.3 8.2 81 149-237 79-160 (250)
133 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.00043 9.2E-09 60.1 4.0 83 158-241 139-225 (311)
134 PRK05476 S-adenosyl-L-homocyst 97.0 0.0022 4.8E-08 57.8 7.4 58 183-241 199-257 (425)
135 TIGR00936 ahcY adenosylhomocys 97.0 0.0028 6E-08 56.9 7.4 57 184-241 183-240 (406)
136 PF01488 Shikimate_DH: Shikima 96.9 0.0041 8.8E-08 47.2 7.0 45 193-237 10-54 (135)
137 PRK08306 dipicolinate synthase 96.8 0.0056 1.2E-07 52.8 7.7 47 194-241 151-197 (296)
138 PRK12771 putative glutamate sy 96.7 0.0033 7.1E-08 59.1 6.1 50 191-241 133-203 (564)
139 PLN02494 adenosylhomocysteinas 96.6 0.0068 1.5E-07 55.2 7.3 58 183-241 241-299 (477)
140 PF01262 AlaDh_PNT_C: Alanine 96.5 0.0091 2E-07 47.0 6.6 47 194-241 19-65 (168)
141 PRK00045 hemA glutamyl-tRNA re 96.4 0.0097 2.1E-07 53.9 6.8 63 178-240 162-228 (423)
142 TIGR00518 alaDH alanine dehydr 96.0 0.02 4.4E-07 51.0 6.7 43 194-237 166-208 (370)
143 TIGR02853 spore_dpaA dipicolin 96.0 0.022 4.7E-07 48.9 6.6 47 194-241 150-196 (287)
144 cd01075 NAD_bind_Leu_Phe_Val_D 95.9 0.027 5.8E-07 45.7 6.6 49 192-241 25-74 (200)
145 PRK11873 arsM arsenite S-adeno 95.9 0.027 5.8E-07 47.8 6.8 49 189-238 72-121 (272)
146 PRK04148 hypothetical protein; 95.8 0.025 5.5E-07 42.8 5.5 48 192-241 14-61 (134)
147 PF02826 2-Hacid_dh_C: D-isome 95.8 0.032 6.9E-07 44.3 6.5 47 192-239 33-79 (178)
148 PTZ00075 Adenosylhomocysteinas 95.8 0.043 9.4E-07 50.1 7.8 49 192-241 251-299 (476)
149 PRK12549 shikimate 5-dehydroge 95.5 0.067 1.5E-06 45.9 7.6 44 193-236 125-168 (284)
150 COG0169 AroE Shikimate 5-dehyd 95.3 0.06 1.3E-06 46.1 6.8 45 193-237 124-168 (283)
151 PRK12550 shikimate 5-dehydroge 95.2 0.09 2E-06 44.8 7.6 45 192-236 119-163 (272)
152 TIGR01809 Shik-DH-AROM shikima 95.2 0.064 1.4E-06 45.9 6.7 43 194-236 124-166 (282)
153 PRK08324 short chain dehydroge 95.1 0.059 1.3E-06 51.9 6.8 77 148-236 386-463 (681)
154 PRK14027 quinate/shikimate deh 94.9 0.13 2.7E-06 44.2 7.6 44 193-236 125-168 (283)
155 PRK00258 aroE shikimate 5-dehy 94.9 0.092 2E-06 44.8 6.8 44 193-236 121-164 (278)
156 PF00670 AdoHcyase_NAD: S-aden 94.5 0.15 3.3E-06 39.8 6.6 48 192-240 20-67 (162)
157 PLN03209 translocon at the inn 94.5 0.13 2.7E-06 48.3 7.1 47 188-235 73-120 (576)
158 TIGR00406 prmA ribosomal prote 94.5 0.22 4.8E-06 42.7 8.2 44 192-237 157-200 (288)
159 PRK07831 short chain dehydroge 94.2 0.15 3.3E-06 42.5 6.6 43 192-235 14-58 (262)
160 PRK12548 shikimate 5-dehydroge 94.1 0.24 5.1E-06 42.6 7.6 36 194-229 125-160 (289)
161 PLN02780 ketoreductase/ oxidor 94.1 0.14 3.1E-06 44.5 6.3 41 194-235 52-93 (320)
162 PRK05866 short chain dehydroge 94.1 0.17 3.6E-06 43.4 6.7 41 194-235 39-80 (293)
163 PRK12749 quinate/shikimate deh 94.0 0.24 5.3E-06 42.5 7.5 36 194-229 123-158 (288)
164 TIGR01318 gltD_gamma_fam gluta 94.0 0.16 3.5E-06 46.7 6.7 36 193-229 139-174 (467)
165 PRK08213 gluconate 5-dehydroge 93.9 0.2 4.3E-06 41.7 6.7 42 194-236 11-53 (259)
166 PRK06841 short chain dehydroge 93.8 0.22 4.8E-06 41.2 6.7 43 194-237 14-57 (255)
167 PRK12769 putative oxidoreducta 93.8 0.16 3.5E-06 48.7 6.5 36 193-229 325-360 (654)
168 cd01080 NAD_bind_m-THF_DH_Cycl 93.8 0.29 6.3E-06 38.6 6.9 43 189-232 38-81 (168)
169 PRK05854 short chain dehydroge 93.7 0.22 4.7E-06 43.1 6.7 41 194-235 13-54 (313)
170 PRK08945 putative oxoacyl-(acy 93.7 0.23 4.9E-06 41.0 6.6 43 191-234 8-51 (247)
171 cd01065 NAD_bind_Shikimate_DH 93.6 0.45 9.8E-06 36.3 7.8 47 193-239 17-64 (155)
172 PF02254 TrkA_N: TrkA-N domain 93.6 0.23 5.1E-06 36.0 5.8 43 198-241 1-43 (116)
173 cd01078 NAD_bind_H4MPT_DH NADP 93.5 0.23 5E-06 39.8 6.2 42 194-236 27-69 (194)
174 PRK06196 oxidoreductase; Provi 93.5 0.24 5.2E-06 42.8 6.7 41 194-235 25-66 (315)
175 TIGR00507 aroE shikimate 5-deh 93.5 0.35 7.6E-06 41.0 7.5 43 192-235 114-156 (270)
176 PF13823 ADH_N_assoc: Alcohol 93.5 0.097 2.1E-06 26.9 2.4 22 10-32 1-22 (23)
177 KOG1252 Cystathionine beta-syn 93.4 0.25 5.5E-06 42.9 6.3 54 188-242 96-153 (362)
178 PF12847 Methyltransf_18: Meth 93.4 0.29 6.2E-06 35.0 5.9 43 194-238 1-44 (112)
179 PRK00377 cbiT cobalt-precorrin 93.3 0.28 6E-06 39.5 6.3 48 188-236 34-82 (198)
180 PRK11705 cyclopropane fatty ac 93.3 0.2 4.3E-06 44.8 5.8 54 183-238 156-209 (383)
181 PRK12809 putative oxidoreducta 93.0 0.24 5.3E-06 47.3 6.4 35 194-229 309-343 (639)
182 PRK06197 short chain dehydroge 93.0 0.3 6.4E-06 41.9 6.3 40 193-233 14-54 (306)
183 PF02353 CMAS: Mycolic acid cy 92.9 0.23 4.9E-06 42.4 5.4 50 186-237 54-103 (273)
184 PRK13940 glutamyl-tRNA reducta 92.8 0.43 9.4E-06 43.2 7.3 47 193-239 179-226 (414)
185 PRK01438 murD UDP-N-acetylmura 92.6 0.42 9.2E-06 43.9 7.2 47 194-241 15-66 (480)
186 PLN02253 xanthoxin dehydrogena 92.6 0.42 9.2E-06 40.2 6.7 40 194-234 17-57 (280)
187 PRK06935 2-deoxy-D-gluconate 3 92.6 0.41 8.8E-06 39.8 6.5 34 194-228 14-48 (258)
188 cd05211 NAD_bind_Glu_Leu_Phe_V 92.4 0.49 1.1E-05 38.9 6.6 37 193-229 21-57 (217)
189 cd05311 NAD_bind_2_malic_enz N 92.4 0.33 7.2E-06 40.1 5.6 36 193-228 23-60 (226)
190 PF00070 Pyr_redox: Pyridine n 92.3 0.4 8.7E-06 32.4 5.0 33 197-230 1-33 (80)
191 COG0373 HemA Glutamyl-tRNA red 92.1 0.6 1.3E-05 42.1 7.2 50 193-242 176-226 (414)
192 TIGR02469 CbiT precorrin-6Y C5 92.1 0.64 1.4E-05 33.7 6.4 48 188-236 13-60 (124)
193 PRK10669 putative cation:proto 92.0 0.29 6.3E-06 46.0 5.4 45 196-241 418-462 (558)
194 PTZ00079 NADP-specific glutama 91.8 0.77 1.7E-05 41.9 7.6 36 192-228 234-270 (454)
195 COG0334 GdhA Glutamate dehydro 91.8 0.61 1.3E-05 41.8 6.8 37 193-230 205-241 (411)
196 PF06325 PrmA: Ribosomal prote 91.6 0.31 6.8E-06 42.0 4.7 43 192-236 159-201 (295)
197 PLN02520 bifunctional 3-dehydr 91.6 0.55 1.2E-05 43.9 6.7 42 194-236 378-419 (529)
198 COG0031 CysK Cysteine synthase 91.6 0.75 1.6E-05 39.6 6.9 55 187-242 54-111 (300)
199 PRK06484 short chain dehydroge 91.4 0.6 1.3E-05 43.2 6.9 44 193-237 267-311 (520)
200 TIGR02964 xanthine_xdhC xanthi 91.3 0.47 1E-05 39.8 5.4 38 192-230 97-134 (246)
201 PLN00203 glutamyl-tRNA reducta 91.3 0.53 1.1E-05 43.9 6.2 43 195-237 266-308 (519)
202 PRK13403 ketol-acid reductoiso 91.3 0.58 1.3E-05 40.8 6.0 48 192-240 13-60 (335)
203 PRK15181 Vi polysaccharide bio 91.1 0.5 1.1E-05 41.4 5.7 47 181-229 2-49 (348)
204 PLN03139 formate dehydrogenase 91.1 0.53 1.1E-05 42.2 5.8 45 194-239 198-242 (386)
205 PRK03562 glutathione-regulated 90.9 0.46 1E-05 45.3 5.6 46 195-241 400-445 (621)
206 PRK06720 hypothetical protein; 90.9 1 2.2E-05 35.4 6.7 39 194-233 15-54 (169)
207 PRK07574 formate dehydrogenase 90.6 0.66 1.4E-05 41.5 5.9 45 194-239 191-235 (385)
208 PF03807 F420_oxidored: NADP o 90.5 1.2 2.7E-05 31.0 6.3 42 197-239 1-47 (96)
209 COG1052 LdhA Lactate dehydroge 90.5 0.62 1.4E-05 40.7 5.6 37 193-230 144-180 (324)
210 KOG1205 Predicted dehydrogenas 90.4 0.68 1.5E-05 39.6 5.6 41 194-235 11-52 (282)
211 PLN00141 Tic62-NAD(P)-related 90.4 0.81 1.8E-05 38.0 6.1 41 192-233 14-55 (251)
212 PRK07424 bifunctional sterol d 90.3 0.9 2E-05 41.0 6.6 39 194-233 177-216 (406)
213 PRK14967 putative methyltransf 90.1 1.2 2.5E-05 36.6 6.8 47 189-237 31-77 (223)
214 PF13241 NAD_binding_7: Putati 90.1 0.38 8.2E-06 34.5 3.4 35 194-229 6-40 (103)
215 PRK06719 precorrin-2 dehydroge 89.9 0.86 1.9E-05 35.4 5.4 32 194-226 12-43 (157)
216 PLN02928 oxidoreductase family 89.9 0.67 1.4E-05 40.9 5.4 35 193-228 157-191 (347)
217 PRK12367 short chain dehydroge 89.9 0.88 1.9E-05 37.9 5.9 35 194-229 13-48 (245)
218 PLN02686 cinnamoyl-CoA reducta 89.8 1 2.2E-05 40.0 6.5 43 193-236 51-94 (367)
219 PF13450 NAD_binding_8: NAD(P) 89.8 0.71 1.5E-05 30.4 4.2 30 200-230 1-30 (68)
220 KOG1014 17 beta-hydroxysteroid 89.7 0.98 2.1E-05 38.9 6.0 43 193-237 47-91 (312)
221 PRK12814 putative NADPH-depend 89.4 0.92 2E-05 43.6 6.3 37 192-229 190-226 (652)
222 PRK03659 glutathione-regulated 89.3 0.71 1.5E-05 43.9 5.4 45 196-241 401-445 (601)
223 PRK13243 glyoxylate reductase; 89.3 1.1 2.3E-05 39.4 6.2 37 194-231 149-185 (333)
224 TIGR02355 moeB molybdopterin s 89.1 0.85 1.8E-05 38.1 5.2 35 195-229 24-58 (240)
225 PRK13943 protein-L-isoaspartat 89.1 1.3 2.9E-05 38.6 6.6 50 187-237 73-123 (322)
226 TIGR02356 adenyl_thiF thiazole 89.1 0.89 1.9E-05 36.8 5.2 35 194-228 20-54 (202)
227 PRK14982 acyl-ACP reductase; P 89.0 1.3 2.8E-05 39.0 6.5 44 193-236 153-198 (340)
228 COG2242 CobL Precorrin-6B meth 89.0 1.7 3.7E-05 34.8 6.5 54 187-241 27-84 (187)
229 PRK08328 hypothetical protein; 88.9 0.88 1.9E-05 37.7 5.1 36 194-229 26-61 (231)
230 PRK14030 glutamate dehydrogena 88.8 1.5 3.2E-05 40.0 6.8 32 193-225 226-257 (445)
231 COG0111 SerA Phosphoglycerate 88.7 0.68 1.5E-05 40.5 4.5 33 194-227 141-173 (324)
232 KOG1201 Hydroxysteroid 17-beta 88.6 1.2 2.7E-05 38.1 5.8 39 192-231 35-74 (300)
233 PF00899 ThiF: ThiF family; I 88.6 1.1 2.4E-05 33.5 5.2 34 195-228 2-35 (135)
234 cd05191 NAD_bind_amino_acid_DH 88.5 1.6 3.6E-05 30.0 5.5 35 193-227 21-55 (86)
235 KOG1208 Dehydrogenases with di 88.5 1.5 3.1E-05 38.3 6.4 43 193-236 33-76 (314)
236 PRK13984 putative oxidoreducta 88.5 1.3 2.8E-05 42.0 6.6 37 192-229 280-316 (604)
237 TIGR02632 RhaD_aldol-ADH rhamn 88.5 1.3 2.9E-05 42.7 6.7 41 194-235 413-454 (676)
238 PRK09310 aroDE bifunctional 3- 88.4 2 4.3E-05 39.7 7.6 42 194-236 331-372 (477)
239 PRK00141 murD UDP-N-acetylmura 88.3 1.6 3.5E-05 40.1 6.9 48 192-240 12-60 (473)
240 PRK08410 2-hydroxyacid dehydro 88.1 1.1 2.3E-05 39.0 5.4 34 194-228 144-177 (311)
241 COG0686 Ald Alanine dehydrogen 88.1 0.79 1.7E-05 39.7 4.3 42 196-238 169-210 (371)
242 PLN03013 cysteine synthase 88.1 1.6 3.5E-05 39.6 6.6 54 188-242 167-224 (429)
243 COG2230 Cfa Cyclopropane fatty 88.0 2.6 5.5E-05 36.1 7.3 53 183-237 61-113 (283)
244 TIGR01317 GOGAT_sm_gam glutama 87.9 1.6 3.4E-05 40.4 6.6 36 192-228 140-175 (485)
245 TIGR02354 thiF_fam2 thiamine b 87.8 1.2 2.7E-05 36.0 5.2 35 194-228 20-54 (200)
246 COG2264 PrmA Ribosomal protein 87.7 2.9 6.3E-05 36.1 7.6 73 157-236 129-202 (300)
247 PRK06436 glycerate dehydrogena 87.6 1.3 2.8E-05 38.4 5.5 35 193-228 120-154 (303)
248 PRK07201 short chain dehydroge 87.6 1.6 3.5E-05 41.6 6.7 40 195-235 371-411 (657)
249 PRK14175 bifunctional 5,10-met 87.6 2.6 5.5E-05 36.2 7.2 55 175-231 138-194 (286)
250 PRK05855 short chain dehydroge 87.6 1.7 3.7E-05 40.4 6.7 41 194-235 314-355 (582)
251 COG2518 Pcm Protein-L-isoaspar 87.6 2.4 5.1E-05 34.6 6.6 47 186-235 64-110 (209)
252 PRK12480 D-lactate dehydrogena 87.5 1.5 3.3E-05 38.4 5.9 37 194-231 145-181 (330)
253 PRK01710 murD UDP-N-acetylmura 87.4 1.5 3.3E-05 40.1 6.2 46 194-240 13-63 (458)
254 PRK07985 oxidoreductase; Provi 87.4 1.9 4E-05 36.9 6.4 34 194-228 48-82 (294)
255 PRK05690 molybdopterin biosynt 87.3 1.4 3.1E-05 36.8 5.5 36 194-229 31-66 (245)
256 PRK06932 glycerate dehydrogena 87.3 1.2 2.5E-05 38.8 5.1 34 194-228 146-179 (314)
257 PRK14031 glutamate dehydrogena 87.2 1.3 2.9E-05 40.3 5.5 33 193-226 226-258 (444)
258 cd05313 NAD_bind_2_Glu_DH NAD( 87.0 2.1 4.5E-05 36.1 6.2 34 192-226 35-68 (254)
259 PRK08317 hypothetical protein; 87.0 2.1 4.6E-05 34.7 6.4 52 186-238 11-63 (241)
260 PRK08261 fabG 3-ketoacyl-(acyl 86.9 2 4.4E-05 39.0 6.6 35 193-228 208-243 (450)
261 COG1086 Predicted nucleoside-d 86.8 1.9 4.2E-05 40.2 6.4 44 192-235 247-291 (588)
262 PRK11761 cysM cysteine synthas 86.8 3.3 7.2E-05 35.6 7.6 54 189-242 57-112 (296)
263 PRK06487 glycerate dehydrogena 86.7 1.4 3.1E-05 38.3 5.3 34 194-228 147-180 (317)
264 PRK12831 putative oxidoreducta 86.7 1.4 3.1E-05 40.4 5.6 36 192-228 137-172 (464)
265 PRK12475 thiamine/molybdopteri 86.6 1.5 3.2E-05 38.7 5.3 36 194-229 23-58 (338)
266 PRK15469 ghrA bifunctional gly 86.6 1.4 3.1E-05 38.2 5.2 37 193-230 134-170 (312)
267 PRK06701 short chain dehydroge 86.5 2.3 4.9E-05 36.3 6.4 37 192-229 43-80 (290)
268 PRK09496 trkA potassium transp 86.5 2.3 5E-05 38.6 6.8 45 193-238 229-273 (453)
269 PRK08223 hypothetical protein; 86.4 1.4 3.1E-05 37.8 5.0 36 194-229 26-61 (287)
270 PRK08644 thiamine biosynthesis 86.3 1.6 3.5E-05 35.7 5.1 35 194-228 27-61 (212)
271 cd00757 ThiF_MoeB_HesA_family 86.3 1.7 3.6E-05 35.9 5.3 34 195-228 21-54 (228)
272 PRK08762 molybdopterin biosynt 86.2 1.9 4.1E-05 38.4 6.0 35 194-228 134-168 (376)
273 PRK00811 spermidine synthase; 86.2 1.9 4.1E-05 36.9 5.7 45 193-238 75-119 (283)
274 KOG0029 Amine oxidase [Seconda 86.2 1.2 2.6E-05 41.4 4.7 37 193-230 13-49 (501)
275 TIGR01138 cysM cysteine syntha 86.1 3.7 7.9E-05 35.2 7.5 54 189-242 53-108 (290)
276 PRK08261 fabG 3-ketoacyl-(acyl 86.0 0.44 9.6E-06 43.3 1.9 42 188-230 27-73 (450)
277 PLN02427 UDP-apiose/xylose syn 86.0 2.1 4.4E-05 38.1 6.1 42 193-235 12-55 (386)
278 PRK07792 fabG 3-ketoacyl-(acyl 85.9 2.8 6E-05 36.1 6.7 34 194-228 11-45 (306)
279 cd01076 NAD_bind_1_Glu_DH NAD( 85.7 3.4 7.3E-05 34.2 6.8 32 193-225 29-60 (227)
280 PRK12810 gltD glutamate syntha 85.6 1.6 3.4E-05 40.2 5.3 36 192-228 140-175 (471)
281 PRK06128 oxidoreductase; Provi 85.6 2.1 4.5E-05 36.6 5.7 34 194-228 54-88 (300)
282 PLN02556 cysteine synthase/L-3 85.5 3.3 7.2E-05 36.9 7.1 55 188-242 103-160 (368)
283 PRK15116 sulfur acceptor prote 85.5 1.8 4E-05 36.7 5.2 35 194-228 29-63 (268)
284 PRK07688 thiamine/molybdopteri 85.3 1.8 3.9E-05 38.1 5.3 36 194-229 23-58 (339)
285 PRK11790 D-3-phosphoglycerate 85.3 1.9 4E-05 39.0 5.5 35 194-229 150-184 (409)
286 TIGR01381 E1_like_apg7 E1-like 85.1 1.6 3.6E-05 41.5 5.1 35 194-228 337-371 (664)
287 PRK07364 2-octaprenyl-6-methox 85.1 1.4 3E-05 39.5 4.5 33 196-229 19-51 (415)
288 PRK06141 ornithine cyclodeamin 85.0 3.7 8.1E-05 35.6 7.1 45 192-236 122-167 (314)
289 PRK05479 ketol-acid reductoiso 84.9 2.6 5.6E-05 37.0 6.0 47 193-240 15-62 (330)
290 PRK05597 molybdopterin biosynt 84.8 2 4.3E-05 38.1 5.3 36 194-229 27-62 (355)
291 PRK14192 bifunctional 5,10-met 84.8 3.8 8.2E-05 35.1 6.9 39 192-231 156-195 (283)
292 PRK08618 ornithine cyclodeamin 84.8 3.6 7.8E-05 35.9 6.9 45 192-236 124-169 (325)
293 PLN02565 cysteine synthase 84.7 3.8 8.3E-05 35.7 7.0 54 188-242 59-116 (322)
294 PLN02256 arogenate dehydrogena 84.6 3.6 7.8E-05 35.6 6.7 51 188-240 29-79 (304)
295 PRK06153 hypothetical protein; 84.5 1.6 3.4E-05 39.1 4.5 35 194-228 175-209 (393)
296 PRK10717 cysteine synthase A; 84.4 4.7 0.0001 35.2 7.5 54 189-242 58-113 (330)
297 PF01135 PCMT: Protein-L-isoas 84.3 3.1 6.8E-05 33.9 5.9 50 186-236 64-114 (209)
298 PRK11207 tellurite resistance 84.2 2.9 6.4E-05 33.5 5.7 47 188-237 24-70 (197)
299 PRK00676 hemA glutamyl-tRNA re 84.2 2.1 4.6E-05 37.6 5.2 39 193-231 172-210 (338)
300 COG1179 Dinucleotide-utilizing 84.1 1.7 3.6E-05 36.3 4.2 36 194-229 29-64 (263)
301 PRK00257 erythronate-4-phospha 83.9 2.4 5.1E-05 38.0 5.4 36 192-228 113-148 (381)
302 PRK07340 ornithine cyclodeamin 83.9 4.6 0.0001 34.9 7.1 44 192-235 122-166 (304)
303 PRK05600 thiamine biosynthesis 83.8 2.2 4.8E-05 38.0 5.2 35 194-228 40-74 (370)
304 PRK13942 protein-L-isoaspartat 83.8 4.9 0.00011 32.7 6.9 51 186-237 68-119 (212)
305 PLN02657 3,8-divinyl protochlo 83.6 2.8 6E-05 37.6 5.8 41 190-231 55-96 (390)
306 TIGR02992 ectoine_eutC ectoine 83.5 4.3 9.3E-05 35.5 6.8 43 193-235 127-170 (326)
307 PRK15438 erythronate-4-phospha 83.4 2.6 5.5E-05 37.7 5.4 34 193-227 114-147 (378)
308 PRK08291 ectoine utilization p 83.4 4.6 9.9E-05 35.3 7.0 44 193-236 130-174 (330)
309 PLN02366 spermidine synthase 83.2 3.2 6.9E-05 36.1 5.8 45 193-238 90-134 (308)
310 cd01562 Thr-dehyd Threonine de 83.1 4.5 9.7E-05 34.7 6.8 48 195-242 65-114 (304)
311 PRK04176 ribulose-1,5-biphosph 83.1 2.1 4.6E-05 36.0 4.6 33 196-229 26-58 (257)
312 PRK12779 putative bifunctional 83.0 2.1 4.5E-05 43.0 5.2 36 193-229 304-339 (944)
313 COG0281 SfcA Malic enzyme [Ene 83.0 2.9 6.2E-05 37.7 5.5 49 180-228 184-234 (432)
314 PLN02927 antheraxanthin epoxid 82.9 2.1 4.5E-05 41.2 4.9 37 192-229 78-114 (668)
315 PLN02695 GDP-D-mannose-3',5'-e 82.8 2.6 5.5E-05 37.4 5.2 35 193-228 19-54 (370)
316 PRK12770 putative glutamate sy 82.6 2.6 5.6E-05 37.0 5.2 37 192-229 15-51 (352)
317 PLN02306 hydroxypyruvate reduc 82.6 2.6 5.6E-05 37.8 5.1 35 194-229 164-199 (386)
318 KOG1210 Predicted 3-ketosphing 82.6 3.9 8.5E-05 35.5 5.9 45 192-237 30-75 (331)
319 TIGR00292 thiazole biosynthesi 82.5 2.2 4.9E-05 35.9 4.5 33 196-229 22-54 (254)
320 PF00289 CPSase_L_chain: Carba 82.2 1.7 3.6E-05 31.7 3.1 36 196-232 3-38 (110)
321 cd01492 Aos1_SUMO Ubiquitin ac 82.1 2.8 6.1E-05 33.8 4.8 35 194-228 20-54 (197)
322 TIGR01316 gltA glutamate synth 82.1 4.5 9.7E-05 37.0 6.7 36 192-228 269-304 (449)
323 KOG2018 Predicted dinucleotide 82.0 2.8 6E-05 36.4 4.8 40 193-232 72-111 (430)
324 PRK13581 D-3-phosphoglycerate 82.0 3.3 7.2E-05 38.7 5.9 34 194-228 139-172 (526)
325 TIGR01316 gltA glutamate synth 82.0 2.7 5.8E-05 38.4 5.2 35 193-228 131-165 (449)
326 TIGR01139 cysK cysteine syntha 82.0 7.2 0.00016 33.4 7.6 54 189-242 51-106 (298)
327 PF11017 DUF2855: Protein of u 81.9 11 0.00023 32.9 8.4 47 193-240 134-182 (314)
328 PRK12831 putative oxidoreducta 81.9 4.3 9.4E-05 37.3 6.5 36 192-228 278-313 (464)
329 PF00208 ELFV_dehydrog: Glutam 81.9 4.1 8.8E-05 34.1 5.8 32 193-225 30-61 (244)
330 TIGR01137 cysta_beta cystathio 81.8 5.9 0.00013 36.1 7.4 53 189-242 56-111 (454)
331 TIGR01327 PGDH D-3-phosphoglyc 81.7 3.6 7.9E-05 38.4 6.0 34 194-228 137-170 (525)
332 PLN02477 glutamate dehydrogena 81.7 3.1 6.8E-05 37.6 5.3 32 193-225 204-235 (410)
333 cd01485 E1-1_like Ubiquitin ac 81.6 3.1 6.8E-05 33.6 4.9 34 195-228 19-52 (198)
334 PTZ00414 10 kDa heat shock pro 81.6 4.2 9E-05 29.1 4.9 23 72-94 46-72 (100)
335 PRK09853 putative selenate red 81.6 2.7 5.7E-05 42.4 5.2 35 193-228 537-571 (1019)
336 PLN00011 cysteine synthase 81.4 6.8 0.00015 34.1 7.3 55 188-242 61-118 (323)
337 PF13580 SIS_2: SIS domain; PD 81.2 3.9 8.5E-05 30.8 5.1 39 187-226 96-137 (138)
338 TIGR01136 cysKM cysteine synth 81.2 8.4 0.00018 33.1 7.7 54 189-242 52-107 (299)
339 PRK09414 glutamate dehydrogena 81.1 7.4 0.00016 35.6 7.6 32 193-225 230-261 (445)
340 PRK07411 hypothetical protein; 81.0 3 6.6E-05 37.4 5.0 34 195-228 38-71 (390)
341 PRK07878 molybdopterin biosynt 81.0 3 6.5E-05 37.5 5.0 35 194-228 41-75 (392)
342 PRK13944 protein-L-isoaspartat 81.0 6.8 0.00015 31.6 6.7 50 186-236 64-114 (205)
343 PRK08132 FAD-dependent oxidore 80.8 2.4 5.1E-05 39.7 4.5 33 196-229 24-56 (547)
344 KOG0069 Glyoxylate/hydroxypyru 80.7 4 8.7E-05 35.8 5.5 48 192-240 159-206 (336)
345 PLN02206 UDP-glucuronate decar 80.7 3.4 7.4E-05 37.7 5.4 34 193-227 117-151 (442)
346 cd06448 L-Ser-dehyd Serine deh 80.6 6.4 0.00014 34.2 6.8 50 193-242 49-100 (316)
347 PRK11749 dihydropyrimidine deh 80.5 3.2 7E-05 37.9 5.2 36 193-229 138-173 (457)
348 PLN02735 carbamoyl-phosphate s 80.4 3.1 6.7E-05 42.5 5.4 53 177-230 5-68 (1102)
349 PLN02356 phosphateglycerate ki 80.3 7.2 0.00016 35.5 7.2 53 190-242 99-153 (423)
350 PRK08198 threonine dehydratase 80.3 6.5 0.00014 35.4 7.0 49 194-242 69-119 (404)
351 PF13738 Pyr_redox_3: Pyridine 80.2 3.2 6.9E-05 32.9 4.5 38 193-231 165-202 (203)
352 PRK07048 serine/threonine dehy 80.2 6.5 0.00014 34.2 6.7 47 196-242 73-121 (321)
353 COG3288 PntA NAD/NADP transhyd 79.9 1.4 3.1E-05 38.0 2.4 51 190-241 159-209 (356)
354 TIGR03315 Se_ygfK putative sel 79.8 3.2 7E-05 41.8 5.2 34 194-228 536-569 (1012)
355 PRK11730 fadB multifunctional 79.6 4.8 0.0001 39.2 6.2 39 196-235 314-352 (715)
356 PLN02970 serine racemase 79.5 7.3 0.00016 34.0 6.9 47 196-242 76-124 (328)
357 PRK06567 putative bifunctional 79.5 3.9 8.5E-05 41.0 5.6 35 193-228 381-415 (1028)
358 PRK08605 D-lactate dehydrogena 79.3 4 8.7E-05 35.8 5.2 36 194-230 145-181 (332)
359 PLN02572 UDP-sulfoquinovose sy 79.3 3.7 8E-05 37.5 5.1 35 192-227 44-79 (442)
360 PRK03369 murD UDP-N-acetylmura 79.3 3.5 7.5E-05 38.2 5.0 28 192-219 9-36 (488)
361 PTZ00188 adrenodoxin reductase 79.1 4.8 0.0001 37.4 5.7 36 193-229 37-73 (506)
362 PRK11749 dihydropyrimidine deh 79.0 7.3 0.00016 35.6 7.0 37 192-228 270-306 (457)
363 PRK08125 bifunctional UDP-gluc 79.0 4.2 9.1E-05 39.1 5.6 39 192-231 312-352 (660)
364 PLN02948 phosphoribosylaminoim 78.9 4.3 9.3E-05 38.5 5.5 37 193-230 20-56 (577)
365 PLN02166 dTDP-glucose 4,6-dehy 78.9 4.5 9.8E-05 36.9 5.5 35 193-228 118-153 (436)
366 KOG1203 Predicted dehydrogenas 78.8 4.7 0.0001 36.4 5.4 43 192-235 76-119 (411)
367 PLN00093 geranylgeranyl diphos 78.7 3.3 7.3E-05 37.9 4.7 33 196-229 40-72 (450)
368 PRK12778 putative bifunctional 78.6 4 8.7E-05 39.9 5.4 34 194-228 430-463 (752)
369 PRK00364 groES co-chaperonin G 78.5 4.9 0.00011 28.4 4.5 24 72-95 37-69 (95)
370 PRK06110 hypothetical protein; 78.3 7 0.00015 34.0 6.4 45 198-242 72-119 (322)
371 PRK08638 threonine dehydratase 78.1 8.5 0.00018 33.7 6.8 47 196-242 76-124 (333)
372 PRK15409 bifunctional glyoxyla 78.0 4.6 0.0001 35.3 5.1 34 194-228 144-178 (323)
373 cd00320 cpn10 Chaperonin 10 Kd 78.0 6 0.00013 27.9 4.8 25 71-95 35-68 (93)
374 PLN02852 ferredoxin-NADP+ redu 77.6 4.8 0.0001 37.3 5.3 36 193-229 24-61 (491)
375 TIGR02437 FadB fatty oxidation 77.5 6 0.00013 38.5 6.2 39 196-235 314-352 (714)
376 PRK14533 groES co-chaperonin G 77.5 7.2 0.00016 27.4 5.0 24 72-95 37-64 (91)
377 TIGR02441 fa_ox_alpha_mit fatt 77.3 6 0.00013 38.6 6.1 39 196-235 336-374 (737)
378 cd01561 CBS_like CBS_like: Thi 77.2 13 0.00028 31.7 7.6 51 192-242 50-102 (291)
379 COG0059 IlvC Ketol-acid reduct 77.1 6.9 0.00015 33.9 5.7 50 192-241 15-64 (338)
380 PRK04457 spermidine synthase; 77.1 9.4 0.0002 32.2 6.6 45 193-238 65-109 (262)
381 PRK06481 fumarate reductase fl 77.1 3.7 7.9E-05 38.2 4.5 34 195-229 61-94 (506)
382 TIGR00080 pimt protein-L-isoas 76.9 10 0.00023 30.7 6.7 50 186-236 69-119 (215)
383 PRK06608 threonine dehydratase 76.8 8.6 0.00019 33.8 6.5 46 197-242 74-121 (338)
384 PRK00216 ubiE ubiquinone/menaq 76.7 8 0.00017 31.4 6.0 48 189-238 46-95 (239)
385 PRK07121 hypothetical protein; 76.6 4.2 9.2E-05 37.5 4.8 33 196-229 21-53 (492)
386 PLN02463 lycopene beta cyclase 76.6 4.5 9.7E-05 37.0 4.8 32 197-229 30-61 (447)
387 PRK14191 bifunctional 5,10-met 76.6 14 0.0003 31.7 7.5 56 175-232 137-194 (285)
388 PLN02712 arogenate dehydrogena 76.4 7.5 0.00016 37.5 6.5 45 194-240 368-412 (667)
389 PRK00107 gidB 16S rRNA methylt 76.4 9.1 0.0002 30.6 6.1 44 192-237 43-87 (187)
390 PRK08246 threonine dehydratase 76.4 12 0.00026 32.3 7.3 49 194-242 67-117 (310)
391 PF00056 Ldh_1_N: lactate/mala 76.2 10 0.00022 28.8 6.0 36 197-232 2-39 (141)
392 PRK08287 cobalt-precorrin-6Y C 76.1 13 0.00028 29.3 6.9 49 188-237 25-73 (187)
393 PHA01634 hypothetical protein 76.0 8.9 0.00019 28.9 5.3 40 194-237 28-69 (156)
394 cd00640 Trp-synth-beta_II Tryp 75.7 9.8 0.00021 31.4 6.3 49 194-242 49-99 (244)
395 PF01946 Thi4: Thi4 family; PD 75.6 4.8 0.0001 33.2 4.2 31 197-228 19-49 (230)
396 PRK12770 putative glutamate sy 75.5 8.9 0.00019 33.6 6.3 34 194-227 171-204 (352)
397 KOG1481 Cysteine synthase [Ami 75.4 4.6 0.0001 34.5 4.1 54 187-241 92-148 (391)
398 PRK01581 speE spermidine synth 75.3 10 0.00022 33.8 6.5 45 192-237 148-192 (374)
399 PRK08294 phenol 2-monooxygenas 75.3 3.8 8.2E-05 39.3 4.1 33 196-229 33-66 (634)
400 cd06447 D-Ser-dehyd D-Serine d 75.0 13 0.00029 33.5 7.3 45 198-242 136-183 (404)
401 TIGR00438 rrmJ cell division p 74.8 7 0.00015 30.9 5.0 42 189-230 27-68 (188)
402 TIGR00477 tehB tellurite resis 74.5 9.9 0.00021 30.4 5.9 48 186-236 22-69 (195)
403 PLN02576 protoporphyrinogen ox 74.4 5.1 0.00011 36.8 4.7 33 196-229 13-46 (496)
404 PRK12775 putative trifunctiona 74.4 5.5 0.00012 40.4 5.2 34 194-228 429-462 (1006)
405 KOG0685 Flavin-containing amin 74.4 6.7 0.00014 36.0 5.1 38 192-229 18-55 (498)
406 TIGR01127 ilvA_1Cterm threonin 74.2 14 0.0003 32.9 7.3 46 197-242 50-97 (380)
407 PLN02823 spermine synthase 74.1 9.9 0.00022 33.4 6.1 44 194-238 103-146 (336)
408 PRK06381 threonine synthase; V 74.0 8.2 0.00018 33.4 5.6 48 195-242 62-112 (319)
409 PF13478 XdhC_C: XdhC Rossmann 74.0 3.9 8.5E-05 31.0 3.2 22 198-219 1-22 (136)
410 PTZ00098 phosphoethanolamine N 73.9 13 0.00027 31.4 6.6 50 186-237 44-93 (263)
411 PRK05562 precorrin-2 dehydroge 73.9 9 0.0002 31.6 5.5 33 194-227 24-56 (223)
412 PF10294 Methyltransf_16: Puta 73.8 5.1 0.00011 31.5 4.0 45 190-236 41-85 (173)
413 PRK09754 phenylpropionate diox 73.8 6.4 0.00014 35.2 5.0 37 192-229 141-177 (396)
414 COG0499 SAM1 S-adenosylhomocys 73.8 6.9 0.00015 34.7 4.9 40 192-232 206-245 (420)
415 PLN02985 squalene monooxygenas 73.7 5.7 0.00012 37.0 4.8 33 196-229 44-76 (514)
416 TIGR00417 speE spermidine synt 73.5 10 0.00023 32.0 6.0 44 193-237 71-114 (270)
417 PRK05225 ketol-acid reductoiso 73.5 3.6 7.7E-05 37.7 3.2 49 192-240 33-86 (487)
418 cd01563 Thr-synth_1 Threonine 73.4 9.3 0.0002 33.1 5.9 48 195-242 70-119 (324)
419 PRK07402 precorrin-6B methylas 73.3 14 0.00031 29.4 6.5 50 187-237 33-82 (196)
420 KOG2013 SMT3/SUMO-activating c 73.2 5.1 0.00011 36.8 4.1 36 194-229 11-46 (603)
421 PRK06046 alanine dehydrogenase 73.1 14 0.00031 32.2 6.9 44 193-236 127-171 (326)
422 PF02670 DXP_reductoisom: 1-de 72.9 10 0.00022 28.5 5.1 29 198-227 1-32 (129)
423 KOG2862 Alanine-glyoxylate ami 72.9 7.2 0.00016 33.9 4.8 35 192-227 89-123 (385)
424 COG1148 HdrA Heterodisulfide r 72.8 6.2 0.00013 36.5 4.5 38 192-230 121-158 (622)
425 PRK14194 bifunctional 5,10-met 72.6 15 0.00032 31.9 6.7 56 175-232 139-196 (301)
426 PRK08639 threonine dehydratase 72.5 14 0.00031 33.4 7.0 46 196-241 74-121 (420)
427 smart00650 rADc Ribosomal RNA 72.4 15 0.00033 28.5 6.3 49 186-237 5-53 (169)
428 PLN02852 ferredoxin-NADP+ redu 72.2 7.1 0.00015 36.2 5.0 26 192-217 163-188 (491)
429 PRK12775 putative trifunctiona 72.1 11 0.00024 38.2 6.7 36 192-227 568-603 (1006)
430 PRK08813 threonine dehydratase 71.9 17 0.00036 32.2 7.1 45 198-242 84-130 (349)
431 cd05312 NAD_bind_1_malic_enz N 71.8 8.5 0.00018 32.9 5.0 37 192-228 22-68 (279)
432 TIGR02440 FadJ fatty oxidation 71.8 11 0.00023 36.7 6.3 39 196-235 305-344 (699)
433 PRK14103 trans-aconitate 2-met 71.4 15 0.00032 30.6 6.4 52 186-239 21-73 (255)
434 TIGR02035 D_Ser_am_lyase D-ser 71.3 13 0.00029 33.8 6.5 45 198-242 154-201 (431)
435 PRK07476 eutB threonine dehydr 71.1 15 0.00033 31.9 6.7 45 198-242 70-116 (322)
436 PRK11154 fadJ multifunctional 71.1 11 0.00023 36.7 6.2 39 196-235 310-349 (708)
437 PTZ00245 ubiquitin activating 71.0 9.2 0.0002 32.4 4.9 36 194-229 25-60 (287)
438 COG0569 TrkA K+ transport syst 70.7 22 0.00047 29.3 7.2 57 186-242 58-116 (225)
439 PRK06382 threonine dehydratase 70.6 18 0.00039 32.6 7.2 45 198-242 76-122 (406)
440 PF03949 Malic_M: Malic enzyme 70.5 5.7 0.00012 33.5 3.6 46 183-228 13-68 (255)
441 TIGR02991 ectoine_eutB ectoine 70.3 16 0.00035 31.7 6.6 46 197-242 69-116 (317)
442 cd01491 Ube1_repeat1 Ubiquitin 70.2 9.9 0.00021 32.7 5.1 35 194-228 18-52 (286)
443 COG0476 ThiF Dinucleotide-util 70.2 8.3 0.00018 32.2 4.7 36 194-229 29-64 (254)
444 cd05212 NAD_bind_m-THF_DH_Cycl 69.9 25 0.00053 26.8 6.7 38 192-230 25-63 (140)
445 cd00762 NAD_bind_malic_enz NAD 69.9 6.7 0.00014 33.1 3.9 39 190-228 20-68 (254)
446 PRK13255 thiopurine S-methyltr 69.9 15 0.00034 30.0 6.1 42 191-235 34-75 (218)
447 PTZ00367 squalene epoxidase; P 69.8 7.7 0.00017 36.7 4.8 33 196-229 34-66 (567)
448 PLN02712 arogenate dehydrogena 69.6 15 0.00033 35.5 6.8 43 196-240 53-95 (667)
449 PF01564 Spermine_synth: Sperm 69.5 7 0.00015 32.7 4.0 44 194-238 76-119 (246)
450 PLN02336 phosphoethanolamine N 69.3 13 0.00028 34.1 6.1 47 189-237 261-307 (475)
451 PRK01747 mnmC bifunctional tRN 69.2 8.2 0.00018 37.1 4.9 32 196-228 261-292 (662)
452 TIGR03329 Phn_aa_oxid putative 69.1 8 0.00017 35.4 4.6 31 197-228 26-58 (460)
453 PRK07804 L-aspartate oxidase; 68.9 7.7 0.00017 36.4 4.6 32 197-229 18-49 (541)
454 PRK14968 putative methyltransf 68.7 13 0.00028 29.0 5.2 42 192-236 21-62 (188)
455 PRK12778 putative bifunctional 68.5 9.1 0.0002 37.4 5.1 37 192-228 567-603 (752)
456 PRK14851 hypothetical protein; 68.4 9.7 0.00021 36.9 5.2 36 194-229 42-77 (679)
457 PLN02464 glycerol-3-phosphate 68.2 8.4 0.00018 36.9 4.7 32 196-228 72-103 (627)
458 TIGR01373 soxB sarcosine oxida 68.2 10 0.00022 33.8 5.1 37 192-228 27-64 (407)
459 PF10727 Rossmann-like: Rossma 68.2 5.9 0.00013 29.6 3.0 40 196-236 11-51 (127)
460 PRK01683 trans-aconitate 2-met 68.1 18 0.00039 30.0 6.3 50 187-237 24-73 (258)
461 PRK12769 putative oxidoreducta 67.9 13 0.00028 35.7 6.0 49 193-241 466-522 (654)
462 PRK12779 putative bifunctional 67.8 15 0.00032 37.1 6.4 34 194-228 446-479 (944)
463 PLN03075 nicotianamine synthas 67.6 22 0.00048 30.7 6.7 45 194-238 123-168 (296)
464 TIGR02371 ala_DH_arch alanine 67.6 23 0.00051 30.8 7.1 44 192-235 125-169 (325)
465 COG2519 GCD14 tRNA(1-methylade 67.6 21 0.00045 30.1 6.3 51 186-237 86-137 (256)
466 COG4821 Uncharacterized protei 67.5 10 0.00023 30.8 4.3 43 186-229 96-141 (243)
467 PF03059 NAS: Nicotianamine sy 67.5 10 0.00022 32.4 4.6 43 196-238 122-165 (276)
468 PRK07334 threonine dehydratase 67.5 19 0.00041 32.5 6.6 46 197-242 73-120 (403)
469 TIGR03840 TMPT_Se_Te thiopurin 67.5 18 0.00039 29.5 5.9 40 193-235 33-72 (213)
470 PRK13656 trans-2-enoyl-CoA red 67.4 13 0.00028 33.4 5.4 33 193-227 39-74 (398)
471 PRK15317 alkyl hydroperoxide r 67.3 8.2 0.00018 35.9 4.4 31 195-226 211-241 (517)
472 COG2226 UbiE Methylase involve 67.3 25 0.00054 29.4 6.8 49 188-237 45-93 (238)
473 PRK10258 biotin biosynthesis p 66.9 18 0.00039 30.0 6.0 45 191-238 39-83 (251)
474 PF12242 Eno-Rase_NADH_b: NAD( 66.8 18 0.00039 24.5 4.7 36 190-226 34-71 (78)
475 PRK00312 pcm protein-L-isoaspa 66.4 23 0.00049 28.6 6.4 48 187-237 71-118 (212)
476 COG0503 Apt Adenine/guanine ph 66.2 16 0.00035 29.0 5.3 36 189-225 110-149 (179)
477 COG1635 THI4 Ribulose 1,5-bisp 65.8 9.7 0.00021 31.6 3.9 31 196-227 31-61 (262)
478 PLN02328 lysine-specific histo 65.7 10 0.00022 37.5 4.7 34 195-229 238-271 (808)
479 PRK07573 sdhA succinate dehydr 65.6 8.9 0.00019 36.8 4.4 29 197-226 37-65 (640)
480 PRK06407 ornithine cyclodeamin 65.4 24 0.00053 30.4 6.7 43 193-235 115-158 (301)
481 PTZ00139 Succinate dehydrogena 65.4 9.3 0.0002 36.5 4.4 31 197-228 31-61 (617)
482 PF00166 Cpn10: Chaperonin 10 65.4 16 0.00034 25.6 4.6 26 71-96 35-69 (93)
483 COG1249 Lpd Pyruvate/2-oxoglut 65.3 12 0.00027 34.3 5.0 37 193-230 171-207 (454)
484 PRK06815 hypothetical protein; 65.3 27 0.00059 30.2 7.0 47 196-242 69-117 (317)
485 KOG0409 Predicted dehydrogenas 65.2 24 0.00051 30.6 6.3 46 195-241 35-80 (327)
486 PRK12814 putative NADPH-depend 65.1 13 0.00029 35.7 5.4 38 191-228 319-356 (652)
487 PLN02529 lysine-specific histo 65.1 12 0.00025 36.7 5.0 35 194-229 159-193 (738)
488 PF02423 OCD_Mu_crystall: Orni 64.8 23 0.0005 30.7 6.4 43 193-235 126-169 (313)
489 PLN00016 RNA-binding protein; 64.8 9.5 0.00021 33.8 4.2 38 193-231 50-92 (378)
490 PF02882 THF_DHG_CYH_C: Tetrah 64.4 20 0.00043 28.0 5.4 40 192-232 33-73 (160)
491 KOG1641 Mitochondrial chaperon 64.4 17 0.00038 25.9 4.5 24 71-94 44-76 (104)
492 PRK14188 bifunctional 5,10-met 64.4 30 0.00066 29.9 7.0 53 175-229 138-193 (296)
493 TIGR03140 AhpF alkyl hydropero 64.4 11 0.00024 35.1 4.6 33 193-226 210-242 (515)
494 COG0421 SpeE Spermidine syntha 64.2 18 0.00039 31.0 5.5 42 196-238 78-119 (282)
495 KOG1370 S-adenosylhomocysteine 64.2 10 0.00022 33.0 3.9 35 194-229 213-247 (434)
496 PRK05579 bifunctional phosphop 64.2 15 0.00032 33.1 5.3 36 193-229 186-238 (399)
497 PRK14189 bifunctional 5,10-met 64.2 27 0.00058 30.0 6.5 54 175-230 138-193 (285)
498 COG0446 HcaD Uncharacterized N 64.1 13 0.00029 32.6 5.0 35 195-230 136-170 (415)
499 TIGR01372 soxA sarcosine oxida 64.1 24 0.00052 35.8 7.2 41 189-229 311-351 (985)
500 PRK07251 pyridine nucleotide-d 64.1 14 0.00031 33.4 5.2 35 194-229 156-190 (438)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=2.2e-52 Score=357.58 Aligned_cols=212 Identities=38% Similarity=0.532 Sum_probs=201.2
Q ss_pred ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
+++|||+++.+.+++++++|++.|+|+++||+|||+++|+|++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46899999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCEEee-ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
+||||.+ +...+|++|+||.+|+.++|++... .|++ .+| +|+||+++++.+++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence 9999998 8899999999999999999998664 4555 455 999999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++||.+.|+..|.|+++ +..+++||++|+|.|.|++|++++|+|+++|+ +|++++++++|+++++++|||.
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcE
Confidence 999999999999999999987 55899999999999999999999999999998 9999999999999999999985
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=2.4e-48 Score=327.25 Aligned_cols=233 Identities=61% Similarity=1.046 Sum_probs=225.9
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
|.+||++..++++||+++|+++++|++|||+||+.|+|+||+|...++|..+.+ +|.++|||.+|+|+++|++|+.+++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 467899999999999999999999999999999999999999999999999886 9999999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|+..+...|++|.+|.+|++++|.......+.|.. .||++|+..++.+++++.+.++|++|.++++.+++|++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 99999988889999999999999999998888888876 99999999999999999999999999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.++++.+...|.+.++.+.+++++|++|.|+|.|.+|++++|-|+..|+++||++|.+++|++++++|||+-
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~ 233 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH 233 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.4e-48 Score=319.92 Aligned_cols=238 Identities=75% Similarity=1.233 Sum_probs=230.6
Q ss_pred CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
.+.+++||++..++++||.++|+..++|+..||+||++++++|++|...|+|..+...||.++|||++|+|+.+|.+|++
T Consensus 3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~ 82 (375)
T KOG0022|consen 3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT 82 (375)
T ss_pred CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence 46789999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
+++||+|+..+...|++|.+|+++..|.|.........+...+||.+|+.-+|+.+||+++..+|+||.+++...+++|+
T Consensus 83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId 162 (375)
T KOG0022|consen 83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID 162 (375)
T ss_pred cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence 99999999999999999999999999999999888877888789999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+...++.+++|.+.+.|+|.|.++.+++++|+++.|+|.|.+|+++++-||+.|+++||++|.+++|.+.++++||+-
T Consensus 163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999973
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-46 Score=311.63 Aligned_cols=226 Identities=31% Similarity=0.461 Sum_probs=201.1
Q ss_pred CCCCCcccceeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEe
Q 026087 1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78 (243)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~ 78 (243)
|++...+.++++|.+++++. ++++.++++|+|.++||+|||+++|||++|++.+.|.++...+|+++|||.+|+|+++
T Consensus 1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence 66677889999999999988 5777999999999999999999999999999999999988899999999999999999
Q ss_pred CCCCCcCCCCCEEeee-cccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087 79 GEGVTEVQPGDHVIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (243)
Q Consensus 79 G~~~~~~~~Gd~V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (243)
|++++.|++||||-+- ...+|..|.+|+++..++|+..-. ...|+. .|| ...+|+|++|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~-~DG-------------t~~~ggf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVY-HDG-------------TITQGGFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccc-cCC-------------CCccCccceeEEEee
Confidence 9999999999999554 567899999999999999995221 123333 455 556679999999999
Q ss_pred ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHHH
Q 026087 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRVL 236 (243)
Q Consensus 158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~-~~~~~~~ 236 (243)
..+++||+++..++||.++|+..|+|.++ ...+++||+++.|.|+|++|.+++|+||+||. +|+++++++ +|.+.++
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK 223 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence 99999999999999999999999999965 77778899999999997799999999999999 999999988 5666777
Q ss_pred HhcccCC
Q 026087 237 NALAMSL 243 (243)
Q Consensus 237 ~~Ga~~~ 243 (243)
.|||+.+
T Consensus 224 ~LGAd~f 230 (360)
T KOG0023|consen 224 SLGADVF 230 (360)
T ss_pred hcCccee
Confidence 7999864
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-44 Score=302.38 Aligned_cols=211 Identities=29% Similarity=0.406 Sum_probs=195.4
Q ss_pred cceeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCC---CCCeeeeeceEEEEEEeCCCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVT 83 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~---~~p~~~G~e~vG~V~~~G~~~~ 83 (243)
.+|+|+++.++++ ++++++|.|++ .|+||+|++.++|||++|++.+.+...-. +.|+++|||.+|+|+++|++|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 3799999999998 99999999987 99999999999999999999998765332 5899999999999999999999
Q ss_pred cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (243)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 163 (243)
++++||||++.|..+|+.|++|++|+.|.|++-.+ .+..+.|| ++++|++.++++++||
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G------------------~la~y~~~~~dfc~KL 140 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG------------------TLAEYYVHPADFCYKL 140 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC------------------ceEEEEEechHheeeC
Confidence 99999999999999999999999999999998776 34444566 9999999999999999
Q ss_pred CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
|++++++++|++. +++.+++|. +++.+++|++|||+|+|++|+++...||++|+.+|+.++..++|+++++++||+.
T Consensus 141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~ 217 (354)
T KOG0024|consen 141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV 217 (354)
T ss_pred CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence 9999999999887 588999975 8899999999999999999999999999999999999999999999999999985
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=1e-40 Score=295.09 Aligned_cols=232 Identities=64% Similarity=1.075 Sum_probs=198.2
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++...++.++++++|.|.|+++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 78999999888899999999999999999999999999999999998765556799999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
||++.+..+|++|.+|..++.+.|.+.......|+. .+|..++..+|...++..+.|+|+||+.+|.+.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999988889999999999999999875432222322 1111111111222222223469999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|+++++++|++.
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~ 233 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD 233 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence 9999999999999998878888999999999999999999999999999977999999999999999999863
No 7
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=1.5e-40 Score=294.06 Aligned_cols=235 Identities=69% Similarity=1.159 Sum_probs=201.7
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
++|||+++.++++++++++++.|+|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 47999999998888999999999999999999999999999999999987665567899999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||||++.+..+|++|++|.++.++.|.........|....++..++...|...+++.+.|+|+||+.++...++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 99999999999999999999999999876432222222111112222223333444455799999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++++.+++.|+|++++...++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 235 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTE 235 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 999999999899999998878888999999999999999999999999999977999999999999999999863
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=2.1e-40 Score=294.42 Aligned_cols=238 Identities=59% Similarity=1.070 Sum_probs=198.7
Q ss_pred CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCC
Q 026087 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVT 83 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~ 83 (243)
+++++|||+++.++++++.+++++.|.|+++||+|||++++||++|++.+.|..+ ...+|.++|||++|+|+++|++++
T Consensus 6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~ 85 (381)
T PLN02740 6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE 85 (381)
T ss_pred ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence 4678999999999987789999999999999999999999999999999988753 236789999999999999999999
Q ss_pred cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCcccccc--CCcceeeecCCcceeeEEEeccceeE
Q 026087 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA 161 (243)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (243)
.|++||||++.+..+|++|.+|.++.++.|+........+....+|..++.. .+...++....|+|+||+.++.+.++
T Consensus 86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~ 165 (381)
T PLN02740 86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV 165 (381)
T ss_pred cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence 9999999999999999999999999999998754321100000011000000 00111122235699999999999999
Q ss_pred EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++|+++++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus 166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 245 (381)
T PLN02740 166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT 245 (381)
T ss_pred ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence 99999999999999999999999887888999999999999999999999999999996799999999999999999986
Q ss_pred C
Q 026087 242 S 242 (243)
Q Consensus 242 ~ 242 (243)
.
T Consensus 246 ~ 246 (381)
T PLN02740 246 D 246 (381)
T ss_pred E
Confidence 3
No 9
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=3.8e-40 Score=291.46 Aligned_cols=234 Identities=76% Similarity=1.232 Sum_probs=201.5
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
++|||+++.+.+++++++++|.|.|+++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v 80 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP 80 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence 37899999988888999999999999999999999999999999999887655568999999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|++.+..+|+.|.+|.+++++.|.+.....+.|.. .+|..++..+|...++..+.|+|+||+.++.+.++++|+++
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 99999988899999999999999999875432222322 12222222233333444456799999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++.+.+++.|+|+++.....+++|++|||+|+|.+|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~ 234 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD 234 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence 999999999999999998877888999999999999999999999999999977999999999999999999863
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=2.1e-39 Score=286.99 Aligned_cols=231 Identities=45% Similarity=0.756 Sum_probs=193.3
Q ss_pred eeEEEEecCC--------CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087 10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (243)
Q Consensus 10 ~~a~~~~~~~--------~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~ 81 (243)
|||+++.+.+ +.+++++++.|.|+++||+|||.+++||++|++++.|..+. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 7899999865 34899999999999999999999999999999999887543 57899999999999999999
Q ss_pred CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (243)
Q Consensus 82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (243)
+++|++||||++.+...|++|.+|.+|+++.|.........|.. .+|..++..++....+..+.|+|+||+.++...++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence 99999999999888889999999999999999875432222221 11111111111111111224699999999999999
Q ss_pred EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++|+++++++++.+.++..|||+++....++++|++|||.|+|.+|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999989999999887888899999999999999999999999999996799999999999999999986
Q ss_pred C
Q 026087 242 S 242 (243)
Q Consensus 242 ~ 242 (243)
.
T Consensus 239 ~ 239 (371)
T cd08281 239 A 239 (371)
T ss_pred e
Confidence 4
No 11
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=2e-38 Score=281.46 Aligned_cols=234 Identities=54% Similarity=0.988 Sum_probs=192.2
Q ss_pred CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
++...|||+++.++++.++++|++.|.|+++||+|||.+++||++|++.+.+.. .+|.++|||++|+|+++|+++++
T Consensus 8 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~ 84 (378)
T PLN02827 8 PNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTE 84 (378)
T ss_pred cccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcc
Confidence 334679999999988779999999999999999999999999999999987742 46789999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
|++||+|++.+...|++|.+|.++.+++|+..... ..|....+...++...|...++....|+|+||+.+|...++++|
T Consensus 85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP 163 (378)
T PLN02827 85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD 163 (378)
T ss_pred cCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence 99999999998889999999999999999874321 11111000000010011111111124699999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++++.+.+++.++|.++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|.++++++|++.
T Consensus 164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T PLN02827 164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD 241 (378)
T ss_pred CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence 999999999988888889987767788999999999999999999999999999967888988999999999999863
No 12
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=2.4e-38 Score=279.70 Aligned_cols=231 Identities=64% Similarity=1.079 Sum_probs=197.6
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
.|||+++.+++++++++++|.|.+.++||+|||+++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 80 (365)
T cd08277 2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKPG 80 (365)
T ss_pred ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCCC
Confidence 588999998887799999999999999999999999999999999988764 4678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+...|++|.+|.++..++|++.... ..|.. .++.......|...+++.+.|+|+||+.++.+.++++|++++
T Consensus 81 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~ 158 (365)
T cd08277 81 DKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP 158 (365)
T ss_pred CEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence 9999988889999999999999999875432 11222 222111111222223333457999999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++.+.+++.|+|+++....++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus 159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~ 232 (365)
T cd08277 159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD 232 (365)
T ss_pred HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc
Confidence 99999999999999998777888999999999999999999999999999977999999999999999999863
No 13
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=2.9e-38 Score=278.42 Aligned_cols=224 Identities=40% Similarity=0.649 Sum_probs=192.0
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||||+++.+++.++++++++.|.|+++||+|||.++++|++|++.+.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence 6999999999988999999999999999999999999999999999886543 578899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+...|++|.+|.++++++|....... ......+| .......+.|+|+||+.++++.++++|++++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~ 150 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD 150 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence 99999999999999999999999997532110 00000001 0000011246999999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++.+.+++.++|.++.....+++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus 151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH 224 (358)
T ss_pred hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 99999999899999987777888999999999999999999999999999966999999999999999999864
No 14
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=3.8e-38 Score=275.33 Aligned_cols=210 Identities=28% Similarity=0.436 Sum_probs=187.1
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++.+++. +++++++.|.|+++||+||+.++++|++|++.+.+.+.. ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 78999987765 999999999999999999999999999999998776432 2457899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+...|++|.+|.+++++.|..... .+|.. . .|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~------------------~G~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-R------------------DGGHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-C------------------CCcceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999987653 12322 2 24999999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++.+++.|||+++ ....+++|++|||+|+|.+|++++|+|+.+|+++|++++++++|.++++++|++.
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~ 211 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF 211 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 999999999999999976 5567899999999999999999999999999955999999999999999999864
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=2.1e-37 Score=276.06 Aligned_cols=215 Identities=28% Similarity=0.394 Sum_probs=179.4
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCC-------CCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~ 81 (243)
-|||+++.++++ ++++++|.|.|+ +|||||||+++|||++|++++.|..+. .+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcCc
Confidence 488999998886 999999999874 689999999999999999999886532 57899999999999999999
Q ss_pred CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCC---CCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA---TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (243)
Q Consensus 82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~---~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (243)
+++|++||||++.+...|++|.+|.+|++++|.+.... ..+|.... | ...|+|+||+.+|..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence 99999999999999999999999999999999974311 01121100 0 012599999999964
Q ss_pred --eeEEcCCCCCh----hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 159 --~~~~lp~~~~~----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
.++++|++++. .+++.+...+.++|+++ ...++++|++|||.|+|++|++++|+|+.+|++.|++++.+++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999998753 34566777888999976 457899999999998899999999999999996677777888999
Q ss_pred HHHHHhccc
Q 026087 233 DRVLNALAM 241 (243)
Q Consensus 233 ~~~~~~Ga~ 241 (243)
++++++|++
T Consensus 224 ~~a~~~Ga~ 232 (393)
T TIGR02819 224 AQARSFGCE 232 (393)
T ss_pred HHHHHcCCe
Confidence 999999985
No 16
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=3.7e-37 Score=271.71 Aligned_cols=221 Identities=25% Similarity=0.319 Sum_probs=182.6
Q ss_pred cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
.|+.++++.+.+....+++.+++.|.|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~ 88 (360)
T PLN02586 9 HPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKF 88 (360)
T ss_pred chhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCcc
Confidence 34556677777766668999999999999999999999999999999998866544678999999999999999999999
Q ss_pred CCCCEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 86 QPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 86 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
++||+|++.+. ..|++|.+|.+|+++.|++...... ... .+| ....|+|+||+.+|.+.++++|
T Consensus 89 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~-~~~-~~g-------------~~~~G~~aey~~v~~~~~~~lP 153 (360)
T PLN02586 89 KEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYN-SIG-HDG-------------TKNYGGYSDMIVVDQHFVLRFP 153 (360)
T ss_pred CCCCEEEEccccCcCCCCccccCCCcccCCCcccccc-ccc-cCC-------------CcCCCccceEEEEchHHeeeCC
Confidence 99999986553 4799999999999999987542100 000 001 0012499999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH-HHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~-~~~~~~~Ga~~ 242 (243)
+++++++++.+.++..|+|+++......++|++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++|++.
T Consensus 154 ~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~ 231 (360)
T PLN02586 154 DNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADS 231 (360)
T ss_pred CCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcE
Confidence 9999999999999999999987666667899999999999999999999999999 78877666655 55667899863
No 17
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=5.8e-37 Score=267.39 Aligned_cols=206 Identities=25% Similarity=0.352 Sum_probs=181.8
Q ss_pred EEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 13 AVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 13 ~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
+.+.+++. .++++++|.|.|+++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 45555552 48999999999999999999999999999999999876544457899999999999999999999999
Q ss_pred CEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
|+|++.+. ..|+.|.+|.+++++.|+.... .|.. .+ |+|+||+.++.+.++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TD------------------GGYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cC------------------CcceeEEEeccccEEECCCCC
Confidence 99987654 4699999999999999987543 2322 22 499999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++.+.+++.|||+++. ..++++|++|||+|+|.+|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus 140 ~~~~aa~l~~~~~ta~~~~~-~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~ 212 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRALL-RASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAAS 212 (329)
T ss_pred CHHHhHHHhccchHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCce
Confidence 99999999999999999874 5789999999999999999999999999999 7999999999999999999974
No 18
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=4e-37 Score=270.17 Aligned_cols=211 Identities=30% Similarity=0.401 Sum_probs=174.9
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCe-eeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~-~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|++++++.++....+++.+.|.+.++||+|||.++|||++|++.+.+..+..+.|. ++|||++|+|+++| .++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 56777777776455788877778999999999999999999999999876655555 99999999999999 77789999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCC--CCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE-EcCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT--GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KIDP 165 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~--~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~lp~ 165 (243)
|||++.+..+|++|.+|.+|.+++|++..... ..+.. .+ |+|+||+.+|.+..+ ++|+
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~-~~------------------G~~aEyv~vp~~~~~~~~pd 140 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-ID------------------GGFAEYVRVPADFNLAKLPD 140 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCC-CC------------------CceEEEEEeccccCeecCCC
Confidence 99999999999999999999999999543211 11111 23 499999999975555 4588
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM 241 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~ 241 (243)
++ ..+++++..++.++|++.......+++++|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++
T Consensus 141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~ 216 (350)
T COG1063 141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD 216 (350)
T ss_pred CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence 88 566677777889998864555656666699999999999999999999999999999999999999998 6665
No 19
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-37 Score=268.76 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=178.3
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhc-CCCC--CCCCCeeeeeceEEEEEEeCCCCCc
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
.-++++++.++++ +++++++.| +.++||||||++++||++|++++. +... ..++|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 3578999998887 999999987 689999999999999999999875 3332 2357899999999999999 6889
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
|++||+|++.+..+|++|.+|.+++++.|++... +|....+ ....|+|+||++++++.++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEECC
Confidence 9999999999999999999999999999987543 2211000 0113499999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++++ +..++.++|+++. .....+|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|++.
T Consensus 142 ~~l~~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~ 217 (343)
T PRK09880 142 EKADEKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK 217 (343)
T ss_pred CCCCHHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence 999987655 4456778999764 445668999999999999999999999999977999999999999999999974
No 20
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=1.6e-36 Score=268.84 Aligned_cols=232 Identities=59% Similarity=0.967 Sum_probs=200.2
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
.+||++++.++++.++++++|.|.+.++||+||++++++|++|++.+.|... ..+|.++|||++|+|+++|++++.|++
T Consensus 6 ~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 84 (373)
T cd08299 6 IKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVKP 84 (373)
T ss_pred ceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCCC
Confidence 5799999999888899999999999999999999999999999999988763 357889999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|++.+..+|++|.+|.+++++.|+........|.. .++..+...+|...+++.+.|+|+||+.++.+.++++|+++
T Consensus 85 Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l 163 (373)
T cd08299 85 GDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA 163 (373)
T ss_pred CCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence 99999988889999999999999999875432112222 22222233334444444456799999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++++++.+++.++|+++....++++|++|||+|+|.+|++++++|+.+|+.+|+++++++++++.++++|++
T Consensus 164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~ 237 (373)
T cd08299 164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT 237 (373)
T ss_pred ChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999999877888999999999998899999999999999986799999999999999999985
No 21
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.6e-36 Score=266.94 Aligned_cols=210 Identities=26% Similarity=0.320 Sum_probs=172.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++..++..++++++|.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 578888765444999999999999999999999999999999999987532 246899999999999999999 9999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||||++.+...|++|.+|.+++++.|...... ..|.... .|+|+||+.++++.++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~------------------~G~~aey~~~~~~~~~~~P~~ 140 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGL------------------HGFMREYFVDDPEYLVKVPPS 140 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCC------------------CccceeEEEeccccEEECCCC
Confidence 999999988889999999999999999864421 1122112 248999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhh------hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHH
Q 026087 167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRVLN 237 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~------~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~---~~~~~~~~~~ 237 (243)
++ + ++.+..++.+++.++. .....++|++|+|+|+|++|++++|+||.+|+ +|+++++ +++|++++++
T Consensus 141 ~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 141 LA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 98 3 3444445555444332 22336789999999999999999999999999 8999987 6889999999
Q ss_pred hcccC
Q 026087 238 ALAMS 242 (243)
Q Consensus 238 ~Ga~~ 242 (243)
+|++.
T Consensus 218 ~Ga~~ 222 (355)
T cd08230 218 LGATY 222 (355)
T ss_pred cCCEE
Confidence 99874
No 22
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=261.95 Aligned_cols=186 Identities=29% Similarity=0.361 Sum_probs=167.6
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+.+.+ ++++|+|.|.|++|||||||++++||+.|..++.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 688999987766 889999999999999999999999999999999997 33447899999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||||+..+. .| ..|+|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~~-~~---------------------------------------------~~G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALGG-VG---------------------------------------------RDGGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEccC-CC---------------------------------------------CCCcceeEEEecHHHceeCCCC
Confidence 9999986420 00 1249999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+|+++||++++++.|||+++....++++|++|||+|+ |++|++++|+||++|+ .++++.++++|.++++++|||.
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~ 190 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH 190 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE
Confidence 9999999999999999999999899999999999986 9999999999999998 6777778888888999999975
No 23
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=2.4e-35 Score=259.88 Aligned_cols=220 Identities=25% Similarity=0.263 Sum_probs=186.0
Q ss_pred cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
....++|+++.+++.++++++++.|.|+++||+|||.++++|++|++.+.|.+....+|.++|||++|+|+++|+++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~ 85 (357)
T PLN02514 6 AEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF 85 (357)
T ss_pred CCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccc
Confidence 34558999999999989999999999999999999999999999999998876544578999999999999999999999
Q ss_pred CCCCEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 86 QPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 86 ~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
++||+|++.+.. +|++|.+|.++..+.|....+....++ .+| ....|+|+||+.++...++++|
T Consensus 86 ~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~~~~iP 150 (357)
T PLN02514 86 TVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKFVVKIP 150 (357)
T ss_pred cCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHHeEECC
Confidence 999999866533 699999999999999987532210000 011 1123599999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhccc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNALAM 241 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~Ga~ 241 (243)
+++++++++.+.+++.|||+++......++|++|+|+|+|++|++++|+|+.+|+ ++++++.++++.+.+ +++|++
T Consensus 151 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~ 227 (357)
T PLN02514 151 EGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGAD 227 (357)
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCc
Confidence 9999999999999999999987666667899999999889999999999999999 788887777766544 568886
No 24
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.4e-35 Score=262.81 Aligned_cols=215 Identities=27% Similarity=0.296 Sum_probs=176.8
Q ss_pred EEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (243)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V 91 (243)
++++.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 44455555568889999999999999999999999999999998876434568999999999999999999999999999
Q ss_pred eeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChh
Q 026087 92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD 170 (243)
Q Consensus 92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~ 170 (243)
++.+.. .|++|.+|.+|+++.|++..... .+.. ..| ....|+|+||+.+|++.++++|++++++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~lP~~ls~~ 153 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTY-NSRS-SDG-------------TRNQGGYSDVIVVDHRFVLSIPDGLPSD 153 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccc-cccc-cCC-------------CcCCCccccEEEEchHHeEECCCCCCHH
Confidence 876654 69999999999999999754210 0000 001 0012499999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHHhcccC
Q 026087 171 KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRVLNALAMS 242 (243)
Q Consensus 171 ~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-~~~~~~~~Ga~~ 242 (243)
+++.+.++..|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +.++++++|++.
T Consensus 154 ~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 154 SGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS 226 (375)
T ss_pred HcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence 999999999999987654433 4689999999999999999999999999 7888877654 478888999864
No 25
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=6.7e-35 Score=257.69 Aligned_cols=231 Identities=59% Similarity=1.029 Sum_probs=206.2
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
+||+++.+++.++++++++.|.+++++|+||+.++++|++|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47899998887799999999999999999999999999999999988754 34678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|+..+...|++|.+|..+++++|.........|.. .+|..++.-+|...+++++.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999988889999999999999999887765444544 4566666667777777778889999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++.+.+++.++|+++.....+++|++|||+|+|.+|++++++|+.+|+..|++++++++|.+.++++|++.
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 231 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE 231 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence 9999999999999998888889999999999988999999999999999966888888999999999999853
No 26
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.4e-35 Score=257.36 Aligned_cols=205 Identities=32% Similarity=0.471 Sum_probs=180.0
Q ss_pred EEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (243)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V 91 (243)
+++.+++.+++++++|.|.++++||+|||+++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 466777777899999999999999999999999999999987443 3333678999999999999999999887 99999
Q ss_pred eeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC------
Q 026087 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------ 165 (243)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~------ 165 (243)
++.+..+|++|.+|.+++++.|..... .|.. .+ |+|+||+.++.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence 999999999999999999999976432 2221 12 4999999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++++.+.+++.++|+++. ...+++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~ 213 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADL 213 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence 8999999988889999999764 5778999999999999999999999999999 8999999999999999999864
No 27
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7e-34 Score=249.34 Aligned_cols=207 Identities=28% Similarity=0.417 Sum_probs=176.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++.+++. +++++++.|.| .++||+|||.++++|++|+..+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 68999998875 99999999997 599999999999999999875432211 1357899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+..+|+.|.+|..|+.+.|..... .|.. ..|+|++|+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-------------------~~G~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-------------------RDGGNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-------------------CCCccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999976432 2211 134999999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++.+. .+.++++++ ....+++|++|||+|+|++|++++|+|+.+|++.|++++++++|+++++++|++.
T Consensus 137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 208 (347)
T PRK10309 137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ 208 (347)
T ss_pred HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence 99988763 345577763 5677899999999999999999999999999966899999999999999999863
No 28
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=6.6e-34 Score=249.24 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=166.7
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC----CCCCeeeeeceEEEEEEeCCCCCc
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
-.|++++.++++ ++++|++.|. +++||+|||+++|||++|++++.|.+.. ..+|.++|||++|+|+++|.+ +
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 357899999886 9999999995 9999999999999999999999987532 257999999999999998764 7
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
|++||||.+.+...|+.| +| +..+.|..... .|.. .+ |+|+||+++|++.++++|
T Consensus 78 ~~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~vP 132 (341)
T cd08237 78 YKVGTKVVMVPNTPVEKD-EI--IPENYLPSSRF---RSSG-YD------------------GFMQDYVFLPPDRLVKLP 132 (341)
T ss_pred cCCCCEEEECCCCCchhc-cc--chhccCCCcce---eEec-CC------------------CceEEEEEEchHHeEECC
Confidence 999999999888778744 45 34566765432 1221 23 389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhh--cCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhccc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++++|+++ .++.++|+++.. ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++++|++
T Consensus 133 ~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~ 211 (341)
T cd08237 133 DNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET 211 (341)
T ss_pred CCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence 99999887755 477788887643 3457899999999999999999999996 6655899999999999999887664
No 29
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=1.7e-33 Score=247.12 Aligned_cols=212 Identities=26% Similarity=0.358 Sum_probs=186.3
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++. +++++.+.|.+.++||+|||+++++|++|++.+.+.+...+.|.++|||++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 78999999886 89999999999999999999999999999999888765446689999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCCC
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~ 167 (243)
+|+..+..+|+.|..|..|+.+.|.....+..++. ...|+|++|+.++.+ .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~-------------------~~~g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSN-------------------FKDGVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccC-------------------CCCcceeEEEEcchhhCceEECCCCC
Confidence 99998888999999999999999986532111111 113489999999974 899999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++.++..+.|+|+++ ....+++|++|||+|+|.+|++++|+|+.+|+..+++++++++|.++++++|++.
T Consensus 141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 214 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD 214 (351)
T ss_pred CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce
Confidence 9999999988999999974 7778999999999988999999999999999977999999999999999999864
No 30
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=1.6e-33 Score=248.97 Aligned_cols=232 Identities=41% Similarity=0.730 Sum_probs=192.1
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
|+|||+++.+++.++++++.+.|.+.++||+|||.++++|++|+..+.+.++ ..+|.++|||++|+|+++|+++.+|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 4789999999777799999999999999999999999999999999988765 346789999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccC-Ccc-eeeecCCcceeeEEEeccceeEEcCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKP-IYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
||+|++.+. .|++|.+|..++.++|.........|.. .+|..-+... |.+ ..++...|+|++|+.++.+.++++|+
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999998764 8999999999999999865432222211 0110000000 000 00122346999999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++++.+.+++.||+.++.....++++++|||+|+|.+|++++|+|+++|++++++++++++|.++++++|++.
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~ 234 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH 234 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE
Confidence 99999999999999999998888888999999999988999999999999999977999999999999999998863
No 31
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=1.6e-33 Score=248.27 Aligned_cols=217 Identities=29% Similarity=0.444 Sum_probs=188.5
Q ss_pred eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc------
Q 026087 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------ 84 (243)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~------ 84 (243)
||+++.++++.+++++++.|.|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999998867999999999999999999999999999999999887653467889999999999999999986
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc-eeEEc
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI 163 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l 163 (243)
|++||+|+..+..+|+.|.+|..+..+.|..... +|....++ .....|+|++|+.++.+ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchh---cccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence 9999999999988999999999999999987643 22221110 00113599999999986 79999
Q ss_pred CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
|++++..+++++++++.|||+++......++|++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++.
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA 225 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence 9999998898888999999998877666779999999998999999999999999978999999999999999999863
No 32
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=2.1e-33 Score=244.96 Aligned_cols=209 Identities=30% Similarity=0.489 Sum_probs=186.0
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++..+++++++.|.++++||+||+.++++|++|+..+.|..+..++|.++|||++|+|+++|+++.+|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 78999999866699999999999999999999999999999999988664445688999999999999999999999999
Q ss_pred EEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
+|++.+ ...|++|.+|..|+++.|.+... .|.. .+ |+|++|+.++...++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RD------------------GGYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cC------------------CcceeEEEEchhheEeCCCCCC
Confidence 998754 46799999999999999997653 2221 12 3899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+.+++.+.++..++|+++.. ..+.++++|||+|+|.+|++++++|+++|+ +|+++++++++++.++++|++.
T Consensus 139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 210 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHH 210 (333)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence 99999999999999998754 489999999999999999999999999999 8999999999999999999863
No 33
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-33 Score=245.15 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=182.7
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++. +++++++.|.|+++|++||+.++++|++|++.+.+..+..++|.++|||++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999998875 99999999999999999999999999999999988765446789999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|++.+...|+.|.+|.++++++|..... .+.. ..|+|++|+.++...++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-------------------RDGGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEc-------------------cCCcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999975432 1211 1248999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++ +...+.++|+ +....++++|++|+|+|+|.+|++++|+|+. +|++.+++++++++|.++++++|++.
T Consensus 138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 209 (339)
T PRK10083 138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW 209 (339)
T ss_pred HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 8876 4456777885 5577789999999999999999999999996 69977888999999999999999864
No 34
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=3.7e-33 Score=245.03 Aligned_cols=209 Identities=31% Similarity=0.486 Sum_probs=181.3
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---C--------CCCCCeeeeeceEEEEEEe
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV 78 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~vG~V~~~ 78 (243)
|||+++.++++ +++++++.|.|.++||+||+.++++|++|+..+.+.. + ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 68999988775 9999999999999999999999999999988765421 1 1136889999999999999
Q ss_pred CCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (243)
Q Consensus 79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (243)
|++++.|++||+|...+...|++|.+|.++..+.|..... .|... ..|+|++|+.++..
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~~g~~a~~~~~~~~ 138 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGG------------------GGGGFAEYVVVPAY 138 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCC------------------CCCceeeEEEechH
Confidence 9999999999999999888999999999999999985431 12110 12489999999999
Q ss_pred eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 159 ~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.++++|+++++++++.+ ....+||+++ ...++++|++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++
T Consensus 139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ 216 (351)
T cd08233 139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL 216 (351)
T ss_pred HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 99999999999988776 5778999977 778899999999999999999999999999997899999999999999999
Q ss_pred cccC
Q 026087 239 LAMS 242 (243)
Q Consensus 239 Ga~~ 242 (243)
|++.
T Consensus 217 ga~~ 220 (351)
T cd08233 217 GATI 220 (351)
T ss_pred CCCE
Confidence 9864
No 35
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=100.00 E-value=2.1e-32 Score=239.36 Aligned_cols=212 Identities=31% Similarity=0.475 Sum_probs=187.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++.+++. +++.+.+.|.| +++||+||+.++++|+.|+..+.+.++..++|.++|||++|+|+++|+++++|++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 57999988876 89999999999 99999999999999999999998887656678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~ 166 (243)
|+|+..+..+|+.|.+|.+++..+|+........|. ...|+|++|++++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence 999999999999999999999999987553321111 123499999999987 89999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++.+++++.|||+++ ...+++++++|||.|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++.
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATD 215 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcE
Confidence 99999999999999999986 6778999999999888999999999999999657889988899999999988753
No 36
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=3.7e-32 Score=241.92 Aligned_cols=224 Identities=31% Similarity=0.405 Sum_probs=185.8
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++.+++. +++++++.|.| .+++|+||+.++++|++|+..+.|.++..++|.++|||++|+|+++|+++++|++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 68999988755 99999999998 49999999999999999999999987655678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCC-CCceecCCCccccccCCc-ceeeecCCcceeeEEEeccc--eeEEcC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT-GAGVMMNDRKSRFSINGK-PIYHFMGTSTFSQYTVVHDV--SVAKID 164 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~G~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~lp 164 (243)
|+|+..+...|++|.+|..+..+.|++..... ..+ .+|.......|- ... ....|+|++|+.++.+ .++++|
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp 155 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK---LYGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIP 155 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCccccccccc---cccccccccccccccc-CCCCCeeEEEEEcccccCeEEECC
Confidence 99999888899999999999999998654321 000 000000000000 000 0123599999999987 899999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
+++++++++.++....|||+++ ....+.+|++|||+|+|.+|.+++++|+++|+.+|+++++++++.+++++++
T Consensus 156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence 9999999999999999999987 7788999999999988999999999999999856999999999999998873
No 37
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=100.00 E-value=5.2e-32 Score=238.96 Aligned_cols=229 Identities=47% Similarity=0.811 Sum_probs=190.7
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++.++++++++.|.+.++||+||+.++++|+.|+..+.+.++ .++|.++|+|++|+|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 68999999887799999999999999999999999999999999988765 35678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|+..+...|++|.+|.+++.++|....... +|.. .++..++...|...+.....|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCccccccc-cccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 9999999999999999999999998654210 0000 0000000000111111233469999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++.+.++..+||.++.....+.++++|||+|+|.+|.+++++|+.+|+++|+++++++++.+.++++|++
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~ 229 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT 229 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999888888899999999998899999999999999995599999999999999888874
No 38
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=100.00 E-value=6e-32 Score=235.96 Aligned_cols=210 Identities=31% Similarity=0.456 Sum_probs=187.6
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+++.++++.+.+.|.+.+++++||+.++++|++|+....+.+. ...+|.++|||++|+|+++|+++..|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999998877799999999999999999999999999999999888764 235688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+..+...|+.|..|..|..++|.+... .|+. .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIG-TD------------------GGFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCcc-CC------------------CcceeeEEecHHHeEECCCC
Confidence 99999999888999999999999999998764 2332 23 48999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++.+.+.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| . +|+++++++++.+.++++|++.
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~ 215 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADH 215 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcE
Confidence 99999999999999999987665 46888999999999889999999999999 6 8999989999999999998753
No 39
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=100.00 E-value=6.5e-32 Score=237.03 Aligned_cols=209 Identities=26% Similarity=0.419 Sum_probs=182.2
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---------CCCCCeeeeeceEEEEEEeCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---------EGLFPCILGHEAAGIVESVGE 80 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---------~~~~p~~~G~e~vG~V~~~G~ 80 (243)
|||+++.+++. +++++.+.|++.+++|+||+.++++|+.|+..+.|... ..++|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999998876 99999999999999999999999999999998887531 114677899999999999999
Q ss_pred CCC--cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087 81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (243)
Q Consensus 81 ~~~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (243)
+++ .|++||+|+..+..+|++|.+|..+..+.|..... +|+.. ...|+|++|+.++.+
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence 999 89999999999999999999999999999976432 33310 012489999999987
Q ss_pred -eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 159 -~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
.++++|+++++.+++.+ .++.++|.++ ...++++|++|+|.|+|.+|.+++++|+++|+..+++++++++|.+++.+
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 67899999999998888 7888999986 77889999999997789999999999999998678889999999999999
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 218 ~g~~ 221 (350)
T cd08256 218 FGAD 221 (350)
T ss_pred cCCc
Confidence 9875
No 40
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=100.00 E-value=1.7e-31 Score=233.70 Aligned_cols=210 Identities=33% Similarity=0.573 Sum_probs=188.2
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++.++++++.+.|.+.+++|+||+.++++|+.|+..+.|..+...+|.++|+|++|+|+.+|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 78999998887799999999999999999999999999999999988765446688999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCCC
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~ 167 (243)
+|+..+...|++|.+|..|+.++|++... .|+. .+ |+|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HP------------------GSFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CC------------------CcceeEEEcccccCceEECCCCC
Confidence 99887778899999999999999998532 2221 12 389999999975 899999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++.+.+...|||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 212 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVA 212 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCE
Confidence 9999999998999999988778889999999999999999999999999999 8999999999999999999853
No 41
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-31 Score=233.61 Aligned_cols=205 Identities=32% Similarity=0.474 Sum_probs=184.4
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.++++++++++.|.|.++++|++||++++++|+.|+....+..+..++|.++|||++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 68999999988899999999999999999999999999999999888766556788999999999999999998899999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|++.+..+|++|++|..+..+.|+.... +|.. .+ |+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence 99998888999999999999999987543 2221 22 38999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.+++.+.+++.++|+++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++++
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~ 206 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY 206 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH
Confidence 99999999999999987665 8899999999998 9999999999999999 899998999888888766
No 42
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=100.00 E-value=1e-31 Score=239.42 Aligned_cols=214 Identities=21% Similarity=0.206 Sum_probs=182.9
Q ss_pred cccceeEEEEec--CC---CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC----------CCCCCeeeeec
Q 026087 6 QVITCKAAVAWE--PN---KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFPCILGHE 70 (243)
Q Consensus 6 ~~~~~~a~~~~~--~~---~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~----------~~~~p~~~G~e 70 (243)
.|.+|||+++.. ++ +.+++++++.|.++++||+||+.++++|++|++.+.+... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 456899999863 22 2378999999999999999999999999999998876521 01123589999
Q ss_pred eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (243)
Q Consensus 71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (243)
++|+|+++|++++.|++||+|++.+...|++|..|..+..++|..... +|+... .|+|+
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~------------------~g~~a 147 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETN------------------YGSFA 147 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCC------------------CCcce
Confidence 999999999999999999999999999999999999999999976432 332212 24899
Q ss_pred eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhc--CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
+|+.++...++++|+++++++++.+.+++.|||+++... .+++++++|+|+|+ |.+|++++++|+.+|+ +++++++
T Consensus 148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~ 226 (393)
T cd08246 148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS 226 (393)
T ss_pred eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999999999999999999999999987654 67899999999997 9999999999999999 7888889
Q ss_pred ChhHHHHHHHhccc
Q 026087 228 DPKKFDRVLNALAM 241 (243)
Q Consensus 228 ~~~~~~~~~~~Ga~ 241 (243)
++++.++++++|++
T Consensus 227 s~~~~~~~~~~G~~ 240 (393)
T cd08246 227 SEEKAEYCRALGAE 240 (393)
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999974
No 43
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=219.97 Aligned_cols=188 Identities=29% Similarity=0.319 Sum_probs=174.3
Q ss_pred CcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~ 82 (243)
.+|+..|-+++++.|.. +++++.|.|+|.++|++||-.|+|+|+.|..++.|.+...+.|+++|-|++|+|+++|+++
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence 56778899999988765 8999999999999999999999999999999999999777899999999999999999999
Q ss_pred CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (243)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (243)
+++++||||+... ..|.|+|+..+|...+++
T Consensus 84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence 9999999997431 134899999999999999
Q ss_pred cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+|+.+++.+||++.+..+|||..+++..++++|++|||+.+ |++|++++|+++..|+ .+|++.++++|.+.+++.|+.
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE 193 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence 99999999999999999999998889999999999999965 9999999999999999 999999999999999999987
Q ss_pred C
Q 026087 242 S 242 (243)
Q Consensus 242 ~ 242 (243)
.
T Consensus 194 h 194 (336)
T KOG1197|consen 194 H 194 (336)
T ss_pred c
Confidence 4
No 44
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=100.00 E-value=2.1e-31 Score=236.23 Aligned_cols=217 Identities=31% Similarity=0.435 Sum_probs=182.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++.+++. ++++++++|.+ .++|++||++++++|++|++.+.|..+ .++|.++|||++|+|+++|++++.|++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 57899888764 99999999996 799999999999999999999988765 3568899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~ 166 (243)
|+|+..+..+|+.|.+|+.++.+.|....+....+.. | . .-.....|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~g~~a~y~~v~~~~~~~~~lP~~ 146 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAY---G--------Y-VDMGPYGGGQAEYLRVPYADFNLLKLPDR 146 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccc---c--------c-cccCCCCCeeeeEEEeecccCcEEECCCC
Confidence 9999999999999999999999999864322100000 0 0 0000113589999999976 89999999
Q ss_pred CChh---hhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~---~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++. +++.+..+..++|+++ ....+++|++|+|.|+|.+|++++|+|+++|+.+|++++++++|.++++++|++
T Consensus 147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223 (375)
T ss_pred CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence 9998 4677777889999987 778899999999998899999999999999986788999999999999999964
No 45
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=100.00 E-value=2.1e-31 Score=233.12 Aligned_cols=211 Identities=30% Similarity=0.437 Sum_probs=186.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++.+++. +++++++.|+| .++||+||++++++|+.|+..+.|.++..++|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999988876 99999999986 89999999999999999999999876554567899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~ 166 (243)
|+|++.+...|+.|.+|..+..+.|....+. .|.. .+ |+|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-ID------------------GTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cC------------------CeeeeEEEcccccCceEECCCC
Confidence 9999998889999999999999999876442 1211 22 389999999987 89999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++..+++.+.+++.+||.++....++.++++|||.|+|.+|.+++|+|+.+|+.+|++++++++|.++++++|++.
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 214 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATH 214 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCc
Confidence 9999999999999999987777788999999999988999999999999999448999999999999999999864
No 46
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=100.00 E-value=3e-31 Score=230.09 Aligned_cols=208 Identities=39% Similarity=0.623 Sum_probs=185.7
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++..++..+.+++.|.|.+.+++|+||++++++|+.|+..+.|..+....|.++|||++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999987666699999999999999999999999999999999988766556788999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|+...+..|++|.+|..+..++|.... .+|.. . .|+|++|+.++...++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEE-V------------------DGGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCcc---ccccc-c------------------CCeeeeEEEechhheEECCCCCCH
Confidence 9999998999999999999999998752 23322 2 348999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++.+.+++.+||+++.. ..+.+++++||+|+ |.+|++++++++.+|+ +|+++.+++++.+.+.++|++
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~ 209 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGAD 209 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999998766 88999999999987 9999999999999999 899988888888888877764
No 47
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=100.00 E-value=1.9e-31 Score=233.99 Aligned_cols=210 Identities=30% Similarity=0.462 Sum_probs=186.6
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC------------CCCCCeeeeeceEEEEEE
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES 77 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~vG~V~~ 77 (243)
|||+++..++.++++++.|.|++.++||+||+.++++|++|+..+.+.++ ..++|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 78999998888899999999999999999999999999999999887543 124567899999999999
Q ss_pred eCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (243)
Q Consensus 78 ~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (243)
+|++++++++||+|+..+...|++|.+|.++.+++|..... .|.. ..|++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-------------------QDGGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-------------------ccCcceeeEEecH
Confidence 99999999999999999999999999999999999976532 1211 2348999999999
Q ss_pred ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.++++|+++++.+++.+.+.+.|||+++......+++++|||+|+|.+|++++|+|+.+|+++|+++++++++.+.+.+
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999988777667789999999889999999999999999788999999999999999
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 219 ~g~~ 222 (350)
T cd08240 219 AGAD 222 (350)
T ss_pred hCCc
Confidence 9875
No 48
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=100.00 E-value=4.2e-31 Score=230.97 Aligned_cols=211 Identities=30% Similarity=0.445 Sum_probs=182.0
Q ss_pred eeEEEEecCCCCeEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++.+++ .+++++++.|.|. ++||+||+.++++|+.|+....+.++. .+|.++|||++|+|+++|++++.+++|
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS-TPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC-CCCcccccceEEEEEeeCCCccccCCC
Confidence 6799998875 4999999999985 999999999999999999998886652 457889999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~ 166 (243)
|+|+..+..+|++|.+|.+++.++|++... +|.. + .....|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~------------~~~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA---G------------SPNLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc---c------------cCCCCCceeEEEEcccccCceEECCCC
Confidence 999998888999999999999999986532 1110 0 00123489999999865 99999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+++++.|||+++. .....++++|||+|+|.+|++++++|+.+|+.+|++++++++|.++++++|++
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~ 214 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE 214 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999999874 47889999999998899999999999999975799998889999999999864
No 49
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.98 E-value=5.1e-31 Score=229.89 Aligned_cols=208 Identities=29% Similarity=0.471 Sum_probs=182.8
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++....+++.+.|.+.++||+|||+++++|++|+..+.+..+. ..|.++|||++|+|+++|++++.|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 789999988775448999999999999999999999999999998886543 3467899999999999999999999999
Q ss_pred EEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
+|++.+ ..+|+.|.+|..+.++.|..... .|.. .+ |+|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VD------------------GGMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-cc------------------CcceeEEEEchHHeEeCCCCCC
Confidence 998754 55799999999999999986542 2222 22 3899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+.+++.+.+...|||+++ ....+++|++|||+|+|.+|++++++|+. +|+ +|+++++++++.+.++++|++.
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 210 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADL 210 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence 999999999999999986 77789999999999999999999999998 599 8999999999999999999754
No 50
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.98 E-value=6.5e-31 Score=229.66 Aligned_cols=215 Identities=29% Similarity=0.383 Sum_probs=184.3
Q ss_pred eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (243)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~ 90 (243)
|+++.++.+..+++++++.|.+.++|++||+.++++|++|+..+.+.....++|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 56788888777999999999999999999999999999999999887655567889999999999999999999999999
Q ss_pred Eee-ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 91 VIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 91 V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
|++ .....|++|.+|.++..++|+...... .|.. ..+ ....|+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-------------~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKY-PDG-------------TITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-cccc-cCC-------------CcCCCcceeEEEechhheEECCCCCCH
Confidence 974 445589999999999999998765321 1110 000 122358999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++.+.+...+||.++.. ..+++|++++|.|+|.+|++++++++.+|+ +|+++++++++.++++++|++.
T Consensus 146 ~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~ 216 (337)
T cd05283 146 AAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADE 216 (337)
T ss_pred HHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence 9999999999999997644 458999999998889999999999999999 8999999999999999898763
No 51
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.98 E-value=7.5e-31 Score=234.38 Aligned_cols=213 Identities=22% Similarity=0.283 Sum_probs=181.7
Q ss_pred ccceeEEEEec--CCC---CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC----------CCCCC-eeeeec
Q 026087 7 VITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGHE 70 (243)
Q Consensus 7 ~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~----------~~~~p-~~~G~e 70 (243)
+.+|||+++.. +++ .+++++.+.|.++++|++||++++++|++|.+...+... ....| .++|||
T Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e 84 (398)
T TIGR01751 5 PETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSD 84 (398)
T ss_pred chhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccc
Confidence 45799999965 443 389999999999999999999999999999887755321 11223 379999
Q ss_pred eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (243)
Q Consensus 71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (243)
++|+|+++|++++.|++||+|++.....|++|++|..++++.|..... .|.. ...|+|+
T Consensus 85 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~~a 143 (398)
T TIGR01751 85 ASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGSFA 143 (398)
T ss_pred eEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCccce
Confidence 999999999999999999999999999999999999999999976432 1221 1234899
Q ss_pred eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhh--cCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
+|+.++...++++|+++++++++.+.++..++|+++.. ...+.+|++|+|+|+ |.+|++++++|+++|+ +++++++
T Consensus 144 e~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~ 222 (398)
T TIGR01751 144 EFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVS 222 (398)
T ss_pred EEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcC
Confidence 99999999999999999999999999999999998754 467899999999998 9999999999999999 7888888
Q ss_pred ChhHHHHHHHhccc
Q 026087 228 DPKKFDRVLNALAM 241 (243)
Q Consensus 228 ~~~~~~~~~~~Ga~ 241 (243)
++++.+.++++|++
T Consensus 223 ~~~~~~~~~~~g~~ 236 (398)
T TIGR01751 223 SPEKAEYCRELGAE 236 (398)
T ss_pred CHHHHHHHHHcCCC
Confidence 89999999999975
No 52
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=1.3e-30 Score=230.31 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=190.3
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc---CC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~---~~ 86 (243)
|||+++.+++.++++++.+.|.++++||+||+.++++|++|+.++.+.++. .+|.++|||++|+|+.+|+++.+ |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999998777899999999999999999999999999999998887654 56789999999999999999988 99
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCc-eecCCCccccccC-CcceeeecCCcceeeEEEeccceeEEcC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG-VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G-~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
+||+|+..+..+|++|.+|..+++++|+....+..++ .. .+|++.+... +.+++ ....|+|++|+.++.+.++++|
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P 157 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTL-YDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLP 157 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccc-cCCcccccccCCCccc-cccCCcceeEEEechhhEEECC
Confidence 9999999888899999999999999999764211111 00 1111111000 00000 0124589999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++.+++.+.+++.|||.++.....+.++++|||+|+|.+|.+++++|+.+|+.+++++++++++.+.++++|++.
T Consensus 158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~ 235 (367)
T cd08263 158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH 235 (367)
T ss_pred CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce
Confidence 999999999999999999998878788899999999988999999999999999955999989999999998888753
No 53
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=1.8e-30 Score=225.71 Aligned_cols=209 Identities=31% Similarity=0.473 Sum_probs=185.8
Q ss_pred eeEEEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 10 ~~a~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
||++++.+++. .+++++.+.|.+.++||+||+.++++|++|+..+.|..+...+|.++|||++|+|+++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68999998884 58888988888999999999999999999999998876555678899999999999999999999
Q ss_pred CCCCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
++||+|.+.+ ..+|++|.+|..+.+++|..... .|.. .+ |+|++|+.++...++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VD------------------GGYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cC------------------CceEEEEEecchhEEECC
Confidence 9999997754 46799999999999999986653 2322 12 389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++.+++.+.+++.|||+++ ...++++++++||+|+|.+|++++++++..|+ +|+++++++++.+.++++|++.
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 214 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW 214 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence 9999999999999999999987 88899999999999999999999999999999 8999999999999999999753
No 54
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=1.1e-30 Score=234.29 Aligned_cols=197 Identities=20% Similarity=0.291 Sum_probs=160.5
Q ss_pred cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhh-cCCCC-C-----CCCCeeeeeceEEEEEEeCC
Q 026087 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDP-E-----GLFPCILGHEAAGIVESVGE 80 (243)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~-~g~~~-~-----~~~p~~~G~e~vG~V~~~G~ 80 (243)
|.||++++.+++. ++++++|.|.|+++||+|||++++||++|++.+ .|... . .++|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4689999999886 999999999999999999999999999999976 45321 1 14788999999999999999
Q ss_pred CCC-cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc-
Q 026087 81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV- 158 (243)
Q Consensus 81 ~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 158 (243)
+++ .|++||||++.+...|+.|.+|. + +|.. .+| +|+||+.++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence 998 59999999999888899988772 1 1211 233 99999999987
Q ss_pred ---eeEEcCCCCChhhhhhc-ccc-cchhhhhh--------hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCEE
Q 026087 159 ---SVAKIDPQAPLDKVCLL-GCG-VPTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV 222 (243)
Q Consensus 159 ---~~~~lp~~~~~~~aa~l-~~~-~~ta~~~~--------~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G--~~~v 222 (243)
.++++|+++++++++.+ +++ ..+++.++ ....++++|++|+|+|+ |++|++++|+|+++| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 58999999999988764 211 11233322 24567899999999985 999999999999975 4579
Q ss_pred EEEcCChhHHHHHHHh
Q 026087 223 IGIDIDPKKFDRVLNA 238 (243)
Q Consensus 223 i~~~~~~~~~~~~~~~ 238 (243)
++++++++|++.++++
T Consensus 207 i~~~~~~~r~~~a~~~ 222 (410)
T cd08238 207 VVTDVNDERLARAQRL 222 (410)
T ss_pred EEEcCCHHHHHHHHHh
Confidence 9999999999999997
No 55
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.97 E-value=2.2e-30 Score=228.58 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=174.1
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
.++++++..+.. +++++.+.|.+.++||+||++++++|++|+..+.+... ...+|.++|||++|+|+++|+++++|
T Consensus 17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 95 (364)
T PLN02702 17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL 95 (364)
T ss_pred ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence 355555555544 89999999989999999999999999999998876321 11357789999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
++||+|+..+..+|++|.+|..|..+.|+.... ++.. +..|+|++|+.++.+.++++|+
T Consensus 96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~------------------~~~g~~~~y~~v~~~~~~~~P~ 154 (364)
T PLN02702 96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATP------------------PVHGSLANQVVHPADLCFKLPE 154 (364)
T ss_pred CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCC------------------CCCCcccceEEcchHHeEECCC
Confidence 999999999999999999999999999986432 1111 1124899999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++.++++. ..+.++|+++ ...++.++++|+|+|+|.+|++++++|+.+|+..+++++++++|.++++++|++
T Consensus 155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 228 (364)
T PLN02702 155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGAD 228 (364)
T ss_pred CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 9999888752 2344577765 677889999999998899999999999999996788898899999999999986
No 56
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.97 E-value=2.7e-30 Score=224.18 Aligned_cols=203 Identities=30% Similarity=0.394 Sum_probs=174.5
Q ss_pred eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++..++ ..+++++.+.|+++++||+||+.++++|++|+..+.+.. ..++|.++|||++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-VKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-CCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6789887766 458888988888999999999999999999999887532 22457799999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+...|+.|.+|..|+.++|.+... +|+. ..|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-------------------SNGGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eecc-------------------CCCceeeEEEcCHHHceeCCCCCC
Confidence 999999888999999999999999987543 2221 124899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++.+.+++.++|+++.. .++++|++|+|+|+ |.+|++++++|+++|+ +|+++++ .+.++++|++
T Consensus 138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~ 205 (325)
T cd08264 138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGAD 205 (325)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCC
Confidence 99999999999999998754 88999999999998 9999999999999999 7888752 3666677764
No 57
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.97 E-value=3.8e-30 Score=222.82 Aligned_cols=202 Identities=25% Similarity=0.432 Sum_probs=173.8
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++ ++++++++.|.++++||+||+.++++|++|...+.|.++ .|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 6899998876 499999999999999999999999999999999988653 5778999999999999987 67999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|...+..+|+.|.+|..+..+.|..... .+....+ |+|++|+.++.+.++++|++++.
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~~ 132 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRD------------------GAFAEYLTLPLENLHVVPDLVPD 132 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCC------------------CceEEEEEechHHeEECcCCCCH
Confidence 99999988999999999999988876442 2221112 38999999999999999999998
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++.+ ....++|. +....+++++++|||+|+|.+|.+++|+|+.+|+ +|++++.++++.+.++++|++.
T Consensus 133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVET 202 (319)
T ss_pred HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence 887764 34445665 4577889999999999889999999999999999 6999999999999999999863
No 58
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.97 E-value=5.8e-30 Score=222.69 Aligned_cols=209 Identities=34% Similarity=0.506 Sum_probs=187.2
Q ss_pred eeEEEEecCCCC-eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 10 ~~a~~~~~~~~~-~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
||++++..++++ +.+.+.+.|.+++++|+||+.++++|+.|...+.+..+ ..++|.++|+|++|+|+++|+++..|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 689999999887 68888899999999999999999999999999988765 3356789999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|+..+..+|+.|.+|..++.+.|..... .|.. . .|+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-I------------------DGGFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-c------------------CCcceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999976542 1222 2 2389999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++.+++.+..++.|||+++.....++++++|||.|+|.+|.+++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~ 211 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGAD 211 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCC
Confidence 9999999999999999988888889999999999889999999999999999 799999999999999888864
No 59
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.97 E-value=4.2e-30 Score=224.74 Aligned_cols=208 Identities=28% Similarity=0.423 Sum_probs=176.1
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++++.++++.+++.+.+.|.|+++||+||++++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999988889999999999999999999999999999999876532 1224677899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+..+..+|+.|.+|..+..++|+.... .+.. .+|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-------------------RPGAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-------------------CCCcceeeEEechHHeEECcCC
Confidence 99999999999999999999999999986431 1211 2348999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.+++.+ ..+.+++.++.. ...+|++|+|.|+|.+|++++|+|+.+|+++|+++++++++.++++++|++.
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~ 211 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR 211 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 998888754 455555554432 3468999999988999999999999999966888888999999999999864
No 60
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=2.9e-30 Score=223.19 Aligned_cols=184 Identities=26% Similarity=0.347 Sum_probs=149.9
Q ss_pred ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecC-hhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCc
Q 026087 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
++||+++.+++. +++++.+.|.|+++||+|||++++|| ++|++.+.|.++. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478999988776 99999999999999999999999996 7999999887643 2579999999999999999998 6
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
|++||||++. +..|.+|.. | .+ |+|+||+.+|.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~---~~------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G---LF------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c---cC------------------CcccceEEcCHHHceeCC
Confidence 9999999863 223333211 0 12 389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
++++++. +.+. ...|||+++.. . ..++++++|+|+|++|++++|+|+.+|++.|++++.+++|++.+.++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~ 188 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY 188 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence 9999764 4444 46789997754 2 34688999999999999999999999996677888888888776554
No 61
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.97 E-value=7.8e-30 Score=221.75 Aligned_cols=208 Identities=32% Similarity=0.479 Sum_probs=183.3
Q ss_pred eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (243)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~ 90 (243)
||+++.+++..+++++.+.|.+.+++++||+.++++|+.|...+.+......+|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68888888666999999999999999999999999999999999887654467889999999999999999999999999
Q ss_pred Eeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
|++.+. ..|++|.+|.+++.+.|++..+ .+.. . .|+|++|+.++...++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYT-T------------------QGGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccc---cCcc-c------------------CCccccEEEEcHHHeEECCCCCCH
Confidence 987654 5699999999999999998543 1211 1 238999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
.+++.+.+...+||.++.. ..++++++|||+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus 139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~ 209 (330)
T cd08245 139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADE 209 (330)
T ss_pred HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcE
Confidence 9999999899999997754 789999999999888899999999999999 8999999999999998888753
No 62
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=7.8e-30 Score=222.81 Aligned_cols=196 Identities=26% Similarity=0.417 Sum_probs=169.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-----------CCCCCeeeeeceEEEEEEe
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV 78 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~vG~V~~~ 78 (243)
|||+++.++ .+++++++.|+++++||+||+.++++|+.|+..+.|... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689998876 599999999999999999999999999999999887321 2235788999999999999
Q ss_pred CCCCCc-CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087 79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (243)
Q Consensus 79 G~~~~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (243)
|+++++ |++||+|+..+...|+.|.+|..++.. ...|+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------------------------~~~g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------------------------EAPGGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------------------------CCCCceeeeEEech
Confidence 999987 999999999999999999999432210 01238999999999
Q ss_pred ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.++++|+++++++++ +...+.+||++ ....++++|++|||+|+|.+|.+++|+|+.+|++.++++++++++.+++++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999998876 55678889987 477889999999999889999999999999999668888889999999999
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 205 ~g~~ 208 (341)
T cd08262 205 MGAD 208 (341)
T ss_pred cCCc
Confidence 9875
No 63
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.97 E-value=1.1e-29 Score=225.80 Aligned_cols=208 Identities=28% Similarity=0.451 Sum_probs=174.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC------C-CCCCCeeeeeceEEEEEEeCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEGV 82 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~V~~~G~~~ 82 (243)
+.+.++.. . .++++++|.|.++++||+||++++++|++|+..+.+.. + ...+|.++|||++|+|+++|+++
T Consensus 29 ~~~~~~~~-~-~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v 106 (384)
T cd08265 29 LGSKVWRY-P-ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV 106 (384)
T ss_pred ceeEEEeC-C-CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence 34444443 3 49999999999999999999999999999998886321 1 12467899999999999999999
Q ss_pred CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (243)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (243)
+.|++||+|++.+..+|+.|+.|..+++++|..... .|+. .+ |+|++|+.++.+.+++
T Consensus 107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~------------------g~~~~~v~v~~~~~~~ 164 (384)
T cd08265 107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-AD------------------GAFAEYIAVNARYAWE 164 (384)
T ss_pred CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CC------------------CcceeeEEechHHeEE
Confidence 999999999999999999999999999999986542 2322 12 3899999999999999
Q ss_pred cCCCC-------Chhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087 163 IDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (243)
Q Consensus 163 lp~~~-------~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~ 234 (243)
+|+++ +.. ++++..++.++|+++... .++++|++|||+|+|.+|++++++|+.+|+.+|++++++++|.++
T Consensus 165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~ 243 (384)
T cd08265 165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL 243 (384)
T ss_pred CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 99863 444 555666888999987655 689999999999889999999999999999779999999999999
Q ss_pred HHHhcccC
Q 026087 235 VLNALAMS 242 (243)
Q Consensus 235 ~~~~Ga~~ 242 (243)
++++|++.
T Consensus 244 ~~~~g~~~ 251 (384)
T cd08265 244 AKEMGADY 251 (384)
T ss_pred HHHcCCCE
Confidence 99999753
No 64
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.97 E-value=1.5e-29 Score=220.82 Aligned_cols=206 Identities=35% Similarity=0.552 Sum_probs=179.5
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++. +++.++++|.++++|++|||.++++|+.|+....+..+...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999988765 89999999999999999999999999999999988765555678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|+..+...|+.|..|..+.++.|..... .++. +.|+|++|+.++.+ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-------------------RDGGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-------------------CCCcceeEEEechh-eEECCCCCCH
Confidence 99988888999999999999999953321 1111 12489999999999 9999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++++ ..+.++++++ ....+.+|++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.++++++|++.
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~ 206 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADD 206 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCE
Confidence 998877 5677888765 77889999999999889999999999999999 8999988999999998888753
No 65
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=1.7e-29 Score=221.00 Aligned_cols=208 Identities=30% Similarity=0.442 Sum_probs=175.6
Q ss_pred eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++.+++. +++++.+.|.| +++||+||+.++++|++|+..+.|.++. ..|.++|||++|+|+++|+++.++++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 68999988776 99999999996 8999999999999999999998887643 457899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~ 166 (243)
|+|+.....+|+.|.+|..++.++|..... .|.. .+| +|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence 999886677899999999999999986432 2211 233 89999999975 99999999
Q ss_pred CChhhhh-----hcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa-----~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++.+. .+...+.+||+++ ....+++|++|+|.|+|.+|++++|+|+.+|++.++++++++++.+.++++|++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~ 215 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT 215 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 9872221 1235677888876 467889999999988899999999999999996689998888899999999986
Q ss_pred C
Q 026087 242 S 242 (243)
Q Consensus 242 ~ 242 (243)
.
T Consensus 216 ~ 216 (345)
T cd08287 216 D 216 (345)
T ss_pred e
Confidence 4
No 66
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=7.7e-30 Score=210.22 Aligned_cols=189 Identities=25% Similarity=0.336 Sum_probs=166.6
Q ss_pred CcccceeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeCC
Q 026087 5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGE 80 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G~ 80 (243)
..+...|++++.+.++| ++++++++|+....+|+||.+|+.||++|+..+.|.|+.. ++|.+-|+|++|+|+.+|+
T Consensus 15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs 94 (354)
T KOG0025|consen 15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS 94 (354)
T ss_pred ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence 44567899999998877 7889999999888889999999999999999999999764 7899999999999999999
Q ss_pred CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (243)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (243)
.+++|++||+|+.... +.|+|++|.+++++.+
T Consensus 95 ~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~e~~L 126 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFSESDL 126 (354)
T ss_pred CcCccCCCCeEeecCC------------------------------------------------CCccceeeEeecccce
Confidence 9999999999986543 2349999999999999
Q ss_pred EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH----HHH
Q 026087 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRV 235 (243)
Q Consensus 161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~----~~~ 235 (243)
+++++.++.+.||++.++..|||..+.+..++.+||+|+-.|+ +.+|.+.+|+|++.|+ +.|-+.++...+ +.+
T Consensus 127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~L 205 (354)
T KOG0025|consen 127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQL 205 (354)
T ss_pred EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 9999999999999999 555555655444 445
Q ss_pred HHhcccC
Q 026087 236 LNALAMS 242 (243)
Q Consensus 236 ~~~Ga~~ 242 (243)
+++|||.
T Consensus 206 k~lGA~~ 212 (354)
T KOG0025|consen 206 KSLGATE 212 (354)
T ss_pred HHcCCce
Confidence 6789885
No 67
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.97 E-value=2.6e-29 Score=219.60 Aligned_cols=207 Identities=33% Similarity=0.510 Sum_probs=180.0
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++. +.+++.+.|.+.+++|+||++++++|+.|+.++.+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 58999988764 99999999999999999999999999999999988764334577999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce-----eEEcC
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID 164 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~lp 164 (243)
+|+..+...|+.|+.|.+++.++|..... +|.. ..|+|++|+.++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNL-------------------YDGGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcce---eccC-------------------CCCcceeeEEecccccccccEEECC
Confidence 99999999999999999999999977542 1211 224899999999988 99999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++.+++.+ ..+.+||+++. ...+++|++|||+|+|.+|.+++++|+.+|++.|+++++++++.+.+.++|++
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~ 212 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD 212 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 99999998776 67889999774 44899999999998899999999999999994499998999998888888764
No 68
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=2.1e-29 Score=220.50 Aligned_cols=207 Identities=34% Similarity=0.521 Sum_probs=175.9
Q ss_pred EEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCC--CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPE--GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~--~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|+++++++. +++++.+.|.+.++||+|||.++++|+.|+..+.+. ... ..+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 456777754 999999999999999999999999999999876432 111 1356789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|++.+..+|++|.+|+.|..++|++.... +.... .|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPV------------------DGTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccC------------------CCceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999865321 10001 23899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+.+++.+ ..+.+|++++ ....+++|++|||.|+|.+|.+++|+|+.+|+++|+++++++++.++++++|++.
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 210 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATH 210 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcE
Confidence 9998876 4778888875 7888999999999988999999999999999944999999999999999888764
No 69
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.97 E-value=3.7e-29 Score=217.06 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=181.2
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++..++.+ +++.+.+.|.+.+++|+||++++++|++|+.++.|.... ...|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 688988854432 778888888889999999999999999999999886542 24578999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|++.+...|+.|.+|.++.+++|..... .|.. . .|++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~------------------~g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-V------------------DGGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccc-c------------------CcceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999986432 2221 1 238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+.++..++|+++.....++++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.+.++|.+
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~ 213 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGAD 213 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999998889999998878888999999999988 7999999999999999 799999998888888777653
No 70
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.97 E-value=9.8e-29 Score=213.39 Aligned_cols=209 Identities=29% Similarity=0.498 Sum_probs=177.9
Q ss_pred eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++.+++ ..+++++++.|.+.+++|+|||.++++|++|.....+.+.....|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 5788888655 349999999999999999999999999999999988876433457899999999999999999999999
Q ss_pred CEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
|+|+..+. .+|+.|++|..+....|+.... +|.. ..|+|++|+.++.+.++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-------------------ADGGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-------------------CCCceEEEEEcchHHeEECcCCC
Confidence 99988764 6799999999999999987432 2211 12489999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE--cCChhHHHHHHHhcccC
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRVLNALAMS 242 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~--~~~~~~~~~~~~~Ga~~ 242 (243)
++.+++ +.....++|+++.....++++++|||.|+|.+|.+++++|+++|+ +|+++ ++++++.++++++|++.
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~ 213 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADA 213 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCcc
Confidence 999876 666788899988888889999999998889999999999999999 78776 33456888888888753
No 71
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.97 E-value=4.6e-29 Score=217.79 Aligned_cols=208 Identities=28% Similarity=0.459 Sum_probs=173.2
Q ss_pred EEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhc-CCCC--CCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087 14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (243)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~ 90 (243)
+++++++ +++++.+.|.++++||+||+.++++|++|+.... +... ...+|.++|+|++|+|+++|+++++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4566665 9999999999999999999999999999988773 3321 1245779999999999999999999999999
Q ss_pred EeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChh
Q 026087 91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD 170 (243)
Q Consensus 91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~ 170 (243)
|+..+..+|++|.+|..|+.+.|..... ++....+ ....|+|++|+.++.+.++++|++++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~ 143 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR 143 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence 9999888999999999999999997432 1110000 0123489999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 171 ~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++. ..++.++|+++...... ++++|||.|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++
T Consensus 144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~ 212 (339)
T cd08232 144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD 212 (339)
T ss_pred Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence 8876 56778899877655555 899999998899999999999999986799999889998988888874
No 72
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=9.9e-29 Score=215.84 Aligned_cols=209 Identities=33% Similarity=0.516 Sum_probs=182.2
Q ss_pred eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
|||+++.+++ ..+++++++.|.+.++|++||+.++++|+.|..++.+..+. ...|.++|||++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 6899998876 34999999999999999999999999999999998887543 245668999999999999999999999
Q ss_pred CCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
||+|+..+ ...|++|.+|..++.+.|.+... .|+. . .|+|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-V------------------DGTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-c------------------CCcceeEEEeccccEEECCCC
Confidence 99998765 56799999999999999987542 1221 1 238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.+++.+.....|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++++++++.+.+.++|++.
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 213 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADA 213 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcE
Confidence 9999999999999999997655 48999999999988 6799999999999999 8999999999999998888753
No 73
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=1.1e-28 Score=214.85 Aligned_cols=206 Identities=33% Similarity=0.500 Sum_probs=181.2
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+++. +++++.+.|+++++||+||+.++++|+.|+....|..+. .+|.++|+|++|+|+.+|+++++|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999988875 999999999999999999999999999999999887654 3778999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|+..+...|++|.+|..++.+.|..... +|.. . .|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-R------------------NGGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-C------------------CCcceeEEEecHHHcEECcCCCCH
Confidence 99998888899999999999988887642 2211 1 238999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.+++.+ ..+.++++++ ...++++|++|||+|+|.+|.+++++|+++|+++|+++++++++.+.++++|++
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 206 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT 206 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence 988766 6777888876 778899999999998899999999999999995489999999999999888864
No 74
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=1.2e-28 Score=215.40 Aligned_cols=206 Identities=32% Similarity=0.494 Sum_probs=179.8
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd 89 (243)
|||+++.+.+. +.+++.+.|+++++||+||+.++++|+.|+....+.+.. ..|.++|+|++|+|+.+|+++..|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999998865 899999999999999999999999999999988876522 4568899999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (243)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 169 (243)
+|...+...|+.|.+|..+....|+.... .|.. ..|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSR-------------------RDGAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---Eecc-------------------cCCcccceEEechHHeEECcCCCCH
Confidence 99998888899999999999999887532 2211 2348999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.+++.+ ....++|.++. ...++++++|||+|+|.+|.+++|+|+.+|+++++++++++++.++++++|++
T Consensus 137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~ 206 (343)
T cd08236 137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD 206 (343)
T ss_pred HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence 998887 57789999774 77899999999998899999999999999995499998888999998888864
No 75
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.96 E-value=6.5e-29 Score=215.84 Aligned_cols=182 Identities=23% Similarity=0.242 Sum_probs=155.4
Q ss_pred eeEEEEecCCC-----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087 10 CKAAVAWEPNK-----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (243)
Q Consensus 10 ~~a~~~~~~~~-----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~ 83 (243)
|||+++.+++. .++++++|.|.|+++||+||++++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 68999998875 3788899999999999999999999999999999887643 35788999999999999999999
Q ss_pred c-CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087 84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (243)
Q Consensus 84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (243)
+ |++||+|+..+. .+ |+|++|+.+|.+.+++
T Consensus 81 ~~~~vGd~V~~~~~------------------------------~~------------------g~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------------------SY------------------GTYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC------------------------------CC------------------CcchheeeecHHHeEE
Confidence 6 999999975321 01 3899999999999999
Q ss_pred cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE-c-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-G-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~-G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
+|+++++++++.+++...|+|. +...... ++++++|+ | +|.+|++++|+|+.+|+ +|++++++++|.++++++|+
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~ 189 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA 189 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 9999999999988888889975 4455554 55566665 4 59999999999999999 89999999999999999998
Q ss_pred cC
Q 026087 241 MS 242 (243)
Q Consensus 241 ~~ 242 (243)
+.
T Consensus 190 ~~ 191 (324)
T cd08291 190 EY 191 (324)
T ss_pred cE
Confidence 64
No 76
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=3e-28 Score=213.14 Aligned_cols=208 Identities=32% Similarity=0.434 Sum_probs=174.8
Q ss_pred eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++++.+++..+.+.+.+.|.|.++|++||++++++|+.|+.++.+.. ....+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999887779999999999999999999999999999998765432 1224567899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+..+..+|+.|.+|..+.+++|..... .|.. ..|+|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVD-------------------TDGCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccce---Eecc-------------------CCCcceEEEEechHHcEECcCC
Confidence 99999998888999999999999999975321 1111 1348999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++++.+ ++...+.++++++. ...++|++|||.|+|.+|++++++++.+|+.+|++++++++|.++++++|++.
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 211 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV 211 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce
Confidence 998544 55567777877654 44578999999888999999999999999866888888899999999998753
No 77
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.96 E-value=5.9e-29 Score=212.24 Aligned_cols=161 Identities=27% Similarity=0.410 Sum_probs=136.7
Q ss_pred eeeeceEEEEEEeCCCCC------cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcc
Q 026087 66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139 (243)
Q Consensus 66 ~~G~e~vG~V~~~G~~~~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~ 139 (243)
++|||++|+|+++|++++ +|++||||++.+..+|++|.+|..++++.|++... +|....++
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~---------- 67 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDS---------- 67 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccC----------
Confidence 579999999999999999 89999999999999999999999999999987543 12110000
Q ss_pred eeeecCCcceeeEEEeccc-eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 026087 140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG 218 (243)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~-~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G 218 (243)
.....|+|+||+.+|+. .++++|+++++++++.+.++..|+|+++ +.....+|++|||+|+|++|++++|+|+.+|
T Consensus 68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 00113499999999997 7999999999999999988889999976 4445669999999999999999999999999
Q ss_pred CCEEEEEcCChhHHHHHHHhcccC
Q 026087 219 ASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 219 ~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++|++++++++|+++++++|++.
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~~Ga~~ 168 (280)
T TIGR03366 145 AARVVAADPSPDRRELALSFGATA 168 (280)
T ss_pred CCEEEEECCCHHHHHHHHHcCCcE
Confidence 966999999999999999999864
No 78
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.96 E-value=3.4e-28 Score=210.55 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=159.5
Q ss_pred eeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
|||+++.+++.+ ++++++|.|.+.++||+|||+++++|+.|+..+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999877653 78899999999999999999999999999999988764 23568899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
++||+|+..+. .|+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV-------------------------------------------------HGTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC-------------------------------------------------CCcceeEEEEchHHeEECCC
Confidence 99999975320 13899999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++++++.+.+...++|+++ ....+++|++|||+|+ |.+|++++++|+++|+ +++++..++++.+.++++|++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~ 186 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIG 186 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCC
Confidence 999999999988889999876 5578999999999987 9999999999999999 888888888888888888874
No 79
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.96 E-value=2.1e-28 Score=213.11 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=160.6
Q ss_pred eEEEEecC---CCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 11 KAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 11 ~a~~~~~~---~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
||+++.++ +.+ +++.++|.|.|+++||+|||+++++|+.|..++.+..+...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 56777775 433 7888999999999999999999999999999888865544578899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
++||+|+.... ....|+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~----------------------------------------------~~~~g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD----------------------------------------------IDRPGSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC----------------------------------------------CCCCCcccceEEEcHHHcccCCC
Confidence 99999974210 00123899999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHh
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~ 238 (243)
++++++++.++++..|||+++....++.+ |++|||+|+ |.+|.+++|+|+.+ |+ +|+++++++++.+.++++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~ 193 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL 193 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence 99999999999999999998877777776 999999987 99999999999998 99 899999999999999999
Q ss_pred cccC
Q 026087 239 LAMS 242 (243)
Q Consensus 239 Ga~~ 242 (243)
|++.
T Consensus 194 g~~~ 197 (336)
T TIGR02817 194 GAHH 197 (336)
T ss_pred CCCE
Confidence 9864
No 80
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=7e-28 Score=210.98 Aligned_cols=199 Identities=28% Similarity=0.289 Sum_probs=165.2
Q ss_pred eeEEEEecCCCC--eEEEe-eccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--------------------CCCCCee
Q 026087 10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI 66 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--------------------~~~~p~~ 66 (243)
||++++.+++.+ +.+.+ .+.|.+.+++|+|||.++++|++|+.++.|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 678888876643 55654 577778999999999999999999998877542 2356889
Q ss_pred eeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCC
Q 026087 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT 146 (243)
Q Consensus 67 ~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 146 (243)
+|||++|+|+++|+++++|++||+|+..+..+|++|..|.. |.. +|.. .+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~~------~~~~-~~------------------ 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----IDY------IGSE-RD------------------ 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----ccc------cCCC-CC------------------
Confidence 99999999999999999999999999988888888766431 111 1110 12
Q ss_pred cceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 026087 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 147 g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
|++++|+.++...++++|+++++.+++.+.+++.|+|+++ ....+++|++|||+|+ |.+|++++++|+++|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 3899999999999999999999999999999999999976 7778999999999998 9999999999999999 78888
Q ss_pred cCChhHHHHHHHhccc
Q 026087 226 DIDPKKFDRVLNALAM 241 (243)
Q Consensus 226 ~~~~~~~~~~~~~Ga~ 241 (243)
+.++ +.+.++++|++
T Consensus 209 ~~~~-~~~~~~~~g~~ 223 (350)
T cd08274 209 AGAA-KEEAVRALGAD 223 (350)
T ss_pred eCch-hhHHHHhcCCe
Confidence 7655 88888888874
No 81
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.96 E-value=1.5e-27 Score=208.69 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=142.0
Q ss_pred eEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCC---CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeeccc
Q 026087 22 LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA 97 (243)
Q Consensus 22 ~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~---~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~ 97 (243)
++++|.+.|.|. +|||||||++++||+.|....... ....++|.++|||++|+|+++|+++++|++||+|....
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 889999999874 999999999999999996433211 11125678999999999999999999999999997310
Q ss_pred CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh----hh
Q 026087 98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC 173 (243)
Q Consensus 98 ~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~----aa 173 (243)
+.|+||++++.+.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 1699999999999999999864432 44
Q ss_pred hcccccchhhhhhhhcCCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcccC
Q 026087 174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAMS 242 (243)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~~~g--~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~~ 242 (243)
.+.+++.|||+++....++++| ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+++++ +|++.
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~ 204 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA 204 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence 5677889999988777778877 99999987 9999999999999998679999999999999876 99864
No 82
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.96 E-value=1.9e-27 Score=208.00 Aligned_cols=202 Identities=29% Similarity=0.403 Sum_probs=171.1
Q ss_pred ecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEe
Q 026087 16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92 (243)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~ 92 (243)
.+++.++++++.+.|.|.++|++||+.++++|+.|+.++.+.. ...++|.++|+|++|+|+++|+++++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 5677779999999999999999999999999999998876542 1224567899999999999999999999999999
Q ss_pred eecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhh
Q 026087 93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172 (243)
Q Consensus 93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a 172 (243)
..++..|++|..|..+....|.+... +|.. . .|+|++|+.++.+.++++|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999998643 2221 1 248999999999999999999998654
Q ss_pred hhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 173 a~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++...+.++++++ ....++|++|+|.|+|.+|.+++|+++.+|++.|+++++++++.++++++|++.
T Consensus 143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATY 209 (340)
T ss_pred -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcE
Confidence 4666778888765 344678999999888999999999999999954888888899999999998753
No 83
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.95 E-value=1.9e-27 Score=207.63 Aligned_cols=184 Identities=29% Similarity=0.372 Sum_probs=160.7
Q ss_pred eeEEEEecCCCC---eEEEeeccCCCCC-CcEEEEEeEEecChhhHHhhcCCCCCC-C----CCeeeeeceEEEEEEeCC
Q 026087 10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE 80 (243)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~evlVkv~a~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~vG~V~~~G~ 80 (243)
|||+++.+++.+ +.+++.|.|.|.+ ++|+||+.++++|+.|+..+.+..+.. + .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999988875 8999999999887 999999999999999999988875422 2 577899999999999999
Q ss_pred CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (243)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (243)
++..|++||+|+.... +.|+|++|+.++...+
T Consensus 81 ~v~~~~~Gd~V~~~~~------------------------------------------------~~g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP------------------------------------------------GLGTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC------------------------------------------------CCccchheEeccHHHe
Confidence 9999999999975321 0138999999999999
Q ss_pred EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHHHH
Q 026087 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRV 235 (243)
Q Consensus 161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~----~~~~~~ 235 (243)
+++|+++++++++.+++...|+|+++.....+++|++|||+|+ |.+|++++++|+++|+ +++++.+++ ++.+.+
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 191 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL 191 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence 9999999999999999999999998877788999999999987 9999999999999999 777776665 678888
Q ss_pred HHhcccC
Q 026087 236 LNALAMS 242 (243)
Q Consensus 236 ~~~Ga~~ 242 (243)
+++|++.
T Consensus 192 ~~~g~~~ 198 (341)
T cd08290 192 KALGADH 198 (341)
T ss_pred HhcCCCE
Confidence 8888764
No 84
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.95 E-value=4.7e-27 Score=204.00 Aligned_cols=184 Identities=26% Similarity=0.287 Sum_probs=163.4
Q ss_pred ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
+||++++.+++.+ +++++++.|.++++||+||+.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 5899999988764 88899999999999999999999999999999888765545678899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+.... +.|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------------------------~~g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS------------------------------------------------ALGAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC------------------------------------------------CCcceeeEEEcCHHHceeCCCC
Confidence 9999973210 0138999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++++.+.+...++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ ++++++.++++.+.++++|++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~ 187 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAW 187 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCC
Confidence 9999999888888999998777788999999999975 9999999999999999 899999999999999999875
No 85
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.95 E-value=1.5e-26 Score=200.14 Aligned_cols=187 Identities=22% Similarity=0.236 Sum_probs=158.1
Q ss_pred eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+++. ++++++.+.|.+.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 68999998875 6999999999999999999999999999999999887532 245789999999999998 456899
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+.... ..|+. ..|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~-------------------~~g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMN-------------------TDGGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCC-------------------CCceeEEEEEEchhhEEECCCC
Confidence 9999985421 01111 1238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCC--CC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAK--VE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~--~~-~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.+++.+.+.+.++|.++..... +. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE 194 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence 9999999999999999987755433 35 4579999998 9999999999999999 7999999999999999999764
No 86
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.95 E-value=1.1e-26 Score=202.94 Aligned_cols=181 Identities=26% Similarity=0.310 Sum_probs=151.0
Q ss_pred ceeEEEEecCCC-CeEEEeecc----CCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeece--EEEEEEeCC
Q 026087 9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE 80 (243)
Q Consensus 9 ~~~a~~~~~~~~-~~~~~~~~~----p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--vG~V~~~G~ 80 (243)
-+|++....+.. .|++++.+. |+|++|||||||++++||+.|+..+.|.... ..+|.++|+++ .|.+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 356666444432 389999887 8899999999999999999999999885432 24577888754 355555778
Q ss_pred CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc-ce
Q 026087 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (243)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 159 (243)
.++.|++||+|... |+|+||+++|. ..
T Consensus 87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~ 114 (338)
T cd08295 87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD 114 (338)
T ss_pred CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence 88899999999621 27999999999 79
Q ss_pred eEEcC-CCCChh-hhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 160 ~~~lp-~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
++++| +++++. +++++.+++.|||+++....++++|++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.++++
T Consensus 115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK 193 (338)
T ss_pred eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99995 678876 788899999999998878889999999999997 9999999999999999 8999999999999999
Q ss_pred H-hcccC
Q 026087 237 N-ALAMS 242 (243)
Q Consensus 237 ~-~Ga~~ 242 (243)
+ +|++.
T Consensus 194 ~~lGa~~ 200 (338)
T cd08295 194 NKLGFDD 200 (338)
T ss_pred HhcCCce
Confidence 8 99863
No 87
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=4.2e-26 Score=197.92 Aligned_cols=203 Identities=27% Similarity=0.326 Sum_probs=169.1
Q ss_pred eeEEEEecCC--CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++...+ ..+++++.+.|.+.++|++||+.++++|++|+....+.++. .+.|.++|||++|+|+++|+.+.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899998664 34888888888889999999999999999999998876543 24678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|.......|+.+.+| .|.... ..|. +..|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~-------------------~~~g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGG-------------------PIDGVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccccccc------cccccc---cccc-------------------ccCceeeeEEEecHHHeEECCCC
Confidence 9999998766555443332 221110 1111 11348999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+.+.+.+||+++.....+++|++|+|+|+|.+|++++++++++|+ +|++++.++++.+.+.++|++
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~ 206 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGAD 206 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 99999999999999999988777889999999999889999999999999999 799999999999999888865
No 88
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.95 E-value=2.5e-26 Score=199.39 Aligned_cols=175 Identities=22% Similarity=0.210 Sum_probs=147.5
Q ss_pred ceeEEEEecC--CCC----eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087 9 TCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (243)
Q Consensus 9 ~~~a~~~~~~--~~~----~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~ 82 (243)
.||++++.++ +.+ +++++.+.|.|++|||+|||++++||+.|...... ..++|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 4889998883 332 88999999999999999999999999887552211 124688999999999995 34
Q ss_pred CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc---e
Q 026087 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S 159 (243)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 159 (243)
+.|++||+|... ++|++|+.++.. .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 579999999731 168899999999 9
Q ss_pred eEEcCCCCCh-----hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087 160 VAKIDPQAPL-----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (243)
Q Consensus 160 ~~~lp~~~~~-----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~ 233 (243)
++++|+++++ ..++++++++.|||+++....++++|++|||+|+ |.+|.+++|+|+.+|+ +|+++++++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 9999999882 2334677899999998888888999999999986 9999999999999999 8999999999999
Q ss_pred HHHHhcccC
Q 026087 234 RVLNALAMS 242 (243)
Q Consensus 234 ~~~~~Ga~~ 242 (243)
+++++|++.
T Consensus 183 ~l~~~Ga~~ 191 (329)
T cd08294 183 WLKELGFDA 191 (329)
T ss_pred HHHHcCCCE
Confidence 999999864
No 89
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.95 E-value=4.1e-26 Score=200.50 Aligned_cols=185 Identities=20% Similarity=0.252 Sum_probs=151.3
Q ss_pred CcccceeEEEEecCC------CCeEEEee---ccCC-CCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeee--ceE
Q 026087 5 GQVITCKAAVAWEPN------KPLVIEDV---QVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA 72 (243)
Q Consensus 5 ~~~~~~~a~~~~~~~------~~~~~~~~---~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~--e~v 72 (243)
.+..++|.+++.+.. +.|++++. +.|. +++||||||+.++++|+.|...+.+.......|.++|+ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~ 83 (348)
T PLN03154 4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF 83 (348)
T ss_pred CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence 455678888886432 11888773 5653 48999999999999999987654432222245789998 889
Q ss_pred EEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeE
Q 026087 73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 152 (243)
Q Consensus 73 G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 152 (243)
|+|..+|++++.|++||+|... ++|+||
T Consensus 84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey 111 (348)
T PLN03154 84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY 111 (348)
T ss_pred EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence 9999999999999999999621 279999
Q ss_pred EEeccce--eE--EcCCCCChh-hhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 026087 153 TVVHDVS--VA--KIDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 153 ~~~~~~~--~~--~lp~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
..++... ++ ++|++++++ +++.++++..|||+++....++++|++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus 112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~ 190 (348)
T PLN03154 112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA 190 (348)
T ss_pred EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence 9888743 54 458999986 688899999999998878888999999999998 9999999999999999 899999
Q ss_pred CChhHHHHHH-HhcccC
Q 026087 227 IDPKKFDRVL-NALAMS 242 (243)
Q Consensus 227 ~~~~~~~~~~-~~Ga~~ 242 (243)
++++|.++++ ++|++.
T Consensus 191 ~~~~k~~~~~~~lGa~~ 207 (348)
T PLN03154 191 GSSQKVDLLKNKLGFDE 207 (348)
T ss_pred CCHHHHHHHHHhcCCCE
Confidence 9999999987 799864
No 90
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.95 E-value=3.9e-26 Score=198.15 Aligned_cols=183 Identities=25% Similarity=0.271 Sum_probs=160.6
Q ss_pred ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
||||+++.+.+.. +++++.+.|.+.++||+|||.++++|+.|.....+..+. ...|.++|||++|+|+++|++++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 6999999988753 677788888889999999999999999999998876532 3456789999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
++||+|+... .+|+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~-------------------------------------------------~~g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALL-------------------------------------------------PGGGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEec-------------------------------------------------CCCceeeEEEecHHHcEeCCC
Confidence 9999997421 013899999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++.+++.+.+++.+||+++.....+++|++|+|+|+ |.+|++++++|+++|+ +++.+.+++++.+.++++|++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 187 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAI 187 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 99999999999999999998877788999999999986 9999999999999999 777788899999999888875
No 91
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.95 E-value=3.5e-26 Score=198.78 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=141.2
Q ss_pred eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCC
Q 026087 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE 101 (243)
Q Consensus 22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~ 101 (243)
++++|.+.|.|++|||||||.++++|+.|. .|.+.....|.++|.|++|+|++.|+ +|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 888999999999999999999999999764 34333334578999999999999874 59999999731
Q ss_pred CccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc----CCCCChhhh-hhcc
Q 026087 102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG 176 (243)
Q Consensus 102 c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l----p~~~~~~~a-a~l~ 176 (243)
++|++|+.++.+.++++ |++++++++ ++++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 15889999998887777 899999987 6788
Q ss_pred cccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 177 ~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.|||+++....++++|++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.++++++|++.
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~ 186 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDV 186 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence 899999998888899999999999986 9999999999999999 8999999999999999999863
No 92
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.94 E-value=7.8e-26 Score=196.41 Aligned_cols=180 Identities=27% Similarity=0.258 Sum_probs=158.9
Q ss_pred ceeEEEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087 9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (243)
Q Consensus 9 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~ 83 (243)
+|||+++.+++. ++++++++.|.+.++|++|||.++++|+.|+....|.... ..+|.++|||++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999998765 4899999999999999999999999999999998886542 36788999999999999999999
Q ss_pred cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (243)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 163 (243)
.+++||+|+... .|+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence 999999997431 138999999999999999
Q ss_pred CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
|++ ..+++.+..++.+||+++.....+.++++|+|+|+ |.+|.+++++++.+|+ +|+++.+++++.+.++++|++
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD 186 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence 987 34677788899999998877788999999999986 9999999999999999 799998899999999888874
No 93
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.94 E-value=4.8e-26 Score=191.40 Aligned_cols=180 Identities=35% Similarity=0.491 Sum_probs=157.2
Q ss_pred cEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 026087 36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (243)
Q Consensus 36 evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (243)
||+|||.++++|+.|+..+.+..+ ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|.+|.. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999988764 335678999999999999999999999999999999999999999997 565
Q ss_pred CccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCC
Q 026087 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (243)
Q Consensus 115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~ 194 (243)
.... .+ ....|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.....+++
T Consensus 77 ~~~~---~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LG-------------------EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---ec-------------------cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 4332 11 1123489999999999999999999999999999999999998877777799
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++|||+|+|.+|++++++++.+|. +|+++++++++.+.++++|++.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 181 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADH 181 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence 9999999986699999999999998 8999999999999998888653
No 94
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.94 E-value=5.3e-26 Score=199.06 Aligned_cols=184 Identities=24% Similarity=0.253 Sum_probs=156.8
Q ss_pred eeEEEEecCCCC---eEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCC---------------CCCCCeeeeec
Q 026087 10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE 70 (243)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e 70 (243)
|||+++.+++++ ++++|.+.|.| .++||+||++++++|++|+.++.+... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 688998887775 88999999999 499999999999999999999877421 23568899999
Q ss_pred eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (243)
Q Consensus 71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (243)
++|+|+.+|+++++|++||+|+..+. .+..|+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~----------------------------------------------~~~~g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVP----------------------------------------------PWSQGTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecC----------------------------------------------CCCCccce
Confidence 99999999999999999999985431 01123899
Q ss_pred eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 026087 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~----~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
+|+.++.+.++++|+++++.+++.+.+.+.++|+++.....+. +|++|+|+|+ |.+|++++++++.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999876766664 4999999986 9999999999999999 78887
Q ss_pred cCChhHHHHHHHhccc
Q 026087 226 DIDPKKFDRVLNALAM 241 (243)
Q Consensus 226 ~~~~~~~~~~~~~Ga~ 241 (243)
.++ ++.++++++|++
T Consensus 194 ~~~-~~~~~~~~~g~~ 208 (350)
T cd08248 194 CST-DAIPLVKSLGAD 208 (350)
T ss_pred eCc-chHHHHHHhCCc
Confidence 654 677888888864
No 95
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.94 E-value=8.2e-26 Score=196.68 Aligned_cols=185 Identities=22% Similarity=0.255 Sum_probs=160.1
Q ss_pred eeEEEEecCCCC-----eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
|||+++.+++.+ +++++++.|.+.+++|+||+.++++|+.|+..+.+..+..++|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 579999988764 666778888889999999999999999999988876654456778999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
|++||+|..... ... .|+|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~------------------~g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGD----------------------------ITR------------------PGSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCC----------------------------CCC------------------CccceEEEEEchHHeeeCC
Confidence 999999974311 001 1389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHH
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlV~G~-g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~ 237 (243)
+++++++++.+++.+.++|.++.....+.+ |++|+|+|+ |.+|++++++++.+| + +|+++++++++.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE 193 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence 999999999999999999998777777777 999999986 999999999999999 7 89999999999999998
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 194 ~g~~ 197 (336)
T cd08252 194 LGAD 197 (336)
T ss_pred cCCc
Confidence 8875
No 96
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.94 E-value=1.2e-25 Score=193.67 Aligned_cols=186 Identities=27% Similarity=0.383 Sum_probs=159.9
Q ss_pred eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
||++++.+.+. .+.+.+.+.|.++++||+||+.++++|+.|+..+.+..+....|.++|||++|+|+++|+ ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 57888877664 367778888888999999999999999999999988765556678999999999999995 57999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|+..... +|. ...|+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGR-------------------TFDGSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCC-------------------CCCcccceEEEcCHHHcEeCCCCC
Confidence 9999864210 000 012389999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++.+++.+.+++.+||.++.....+.+|++|||+|+ |.+|++++++|+.+|+ +|+++..++++.+.++++|++
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 189 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGAD 189 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc
Confidence 999999999999999998888888999999999987 9999999999999999 799999999999999989875
No 97
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.94 E-value=5.3e-26 Score=198.87 Aligned_cols=188 Identities=31% Similarity=0.343 Sum_probs=158.3
Q ss_pred eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
|||+++..++ ..+++++++.|.++++||+||++++++|++|+....+.. ....|.++|||++|+|+.+|++++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 6899999884 338899999999999999999999999999988775544 12356789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|+......|+ + ..+.|+|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------N-------------------DPRNGAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------C-------------------CCCCCcccceEEechhheEECCCCCC
Confidence 999865432111 0 01134899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~----------~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.+++.+++.+.++|+++.....+ +++++|+|+|+ |.+|++++++|+++|+ +|+++. +++|.+.+++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~ 196 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS 196 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence 999999999999999987665544 78999999997 9999999999999999 788876 5688899998
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 197 ~g~~ 200 (339)
T cd08249 197 LGAD 200 (339)
T ss_pred cCCC
Confidence 9875
No 98
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=1.9e-25 Score=191.71 Aligned_cols=177 Identities=20% Similarity=0.182 Sum_probs=153.4
Q ss_pred eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||++++.+++ ..+++++.+.|.+.++|++||+.++++|+.|....... ..|.++|||++|+|+++|+++..|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 5788887754 12777789999999999999999999999999877622 235689999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|.... . .|+|++|+.++.+.++++|++++
T Consensus 77 d~V~~~~-------------------------------~------------------~g~~~~~~~v~~~~~~~ip~~~~ 107 (305)
T cd08270 77 ARVVGLG-------------------------------A------------------MGAWAELVAVPTGWLAVLPDGVS 107 (305)
T ss_pred CEEEEec-------------------------------C------------------CcceeeEEEEchHHeEECCCCCC
Confidence 9997431 0 13899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+.+++.+++.+.|||+++...... +|++++|+|+ |.+|.+++++++.+|+ +|+++++++++.+.++++|++
T Consensus 108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 179 (305)
T cd08270 108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAA 179 (305)
T ss_pred HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 999999999999999987655544 5999999988 9999999999999999 899999999999999999874
No 99
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.94 E-value=1.5e-25 Score=194.30 Aligned_cols=186 Identities=20% Similarity=0.212 Sum_probs=153.2
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC-CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+++.+ +.+++.+.|.+.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.| +.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988764 7889999999999999999999999999987665322 122457899999999999954 46799
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+..+.. .|.. . .|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVS-H------------------HGGYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCC-C------------------CCcceeEEEEcHHHeEECCCC
Confidence 99999864320 1111 1 238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhc--CC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~--~~-~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++++.++++..||+.++... .. ..++++|||+|+ |.+|.+++++|+.+|+ +|+++++++++.++++++|++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 193 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAK 193 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCC
Confidence 99999999999999998876432 22 345789999998 9999999999999999 899999999999999999875
No 100
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.94 E-value=2.4e-25 Score=192.62 Aligned_cols=183 Identities=30% Similarity=0.361 Sum_probs=157.9
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCc
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
|||+++.+++.+ +++.+.+.|.+.+++|+||+.++++|+.|+..+.|..+. ...|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689998876543 677787777789999999999999999999998876432 345788999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
+++||+|+.... ..+ |+|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~-----------------------------~~~------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG-----------------------------RAG------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC-----------------------------CCC------------------ceeeEEEEEchHHeEeCC
Confidence 999999975421 012 389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++++.+++.+.+.+.|+|. +.....++++++|+|+|+ |.+|.+++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~ 189 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGAD 189 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 99999999999999999954 667788999999999986 9999999999999999 899999999999999888875
No 101
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.94 E-value=2.7e-25 Score=192.51 Aligned_cols=185 Identities=25% Similarity=0.261 Sum_probs=154.7
Q ss_pred eEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
||+++...+.+ ++++++|.|.+.++||+||++++++|+.|+..+.|.++. ...|.++|||++|+|+. +++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 67888877664 789999999999999999999999999999999887532 24588999999999998 55678999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|+..+.. .|.. . .|++++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVS-H------------------DGGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCC-C------------------CccceEEEEEchhheEECCCCC
Confidence 9999864310 1110 1 2389999999999999999999
Q ss_pred Chhhhhhcccccchhhhhhhhc--CCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNT--AKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~-~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++.+++.+.+...+++.++... ..+.+++ +|+|+|+ |.+|.+++++|+.+|+ ++++++.++++.+.++++|++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~ 192 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGAS 192 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCc
Confidence 9999999998888888765433 3478898 9999997 9999999999999999 788888888888999989875
No 102
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.94 E-value=2.8e-25 Score=192.43 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=155.4
Q ss_pred eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+++. .+++++.|.|.|+++||+||+.++++|+.|...+.+.... ..+|.++|||++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998775 3889999999999999999999999999999988876532 24578899999999999 7777899
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+..... .| .+..|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~-------------------~~~~g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VG-------------------ERHWGGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CC-------------------CCCCCcceeEEEEchHHeeeCCCC
Confidence 99999853210 00 011248999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhh--hcCCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~-~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++++++.+.+.+.+++.++. ...... ++++|||+|+ |.+|.+++|+|+.+|+ +|++++++++|.++++++|++.
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 194 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE 194 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence 999999999988888876543 123444 6789999998 9999999999999999 8999989999999999999853
No 103
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=8.7e-25 Score=189.74 Aligned_cols=181 Identities=24% Similarity=0.310 Sum_probs=160.0
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
.||+++..++.+ +++++.+.|.|.++||+||+.++++|+.|+.++.+.... ..+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence 378888887754 888999999999999999999999999999998887543 25688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|..... .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~ 111 (331)
T cd08273 81 VGDRVAALTR-------------------------------------------------VGGNAEYINLDAKYLVPVPEG 111 (331)
T ss_pred CCCEEEEeCC-------------------------------------------------CcceeeEEEechHHeEECCCC
Confidence 9999975321 128999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++..+++.+.++..++|+++.....+++|++|+|+|+ |.+|++++++++.+|+ +|+++.. +++.++++++|++
T Consensus 112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~ 185 (331)
T cd08273 112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGAT 185 (331)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCe
Confidence 9999999999999999998877788999999999997 9999999999999999 8888877 8888998888853
No 104
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.93 E-value=2.1e-24 Score=185.26 Aligned_cols=182 Identities=29% Similarity=0.333 Sum_probs=159.0
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++++.+.+.+ +++.+.+.|.+.+++++||+.++++|+.|+....+..+. ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 689999876543 778888888889999999999999999999988776532 24678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|.... . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALL-------------------------------A------------------GGGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEec-------------------------------C------------------CCceeEEEEcCHHHhccCCCC
Confidence 999997431 0 138999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+.....++|+++.....+.++++++|+|+ |.+|++++++++.+|+ +++++++++++.+.++++|++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGAD 186 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 9999999999899999998877788999999999997 9999999999999999 799999998898888887754
No 105
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.93 E-value=2.2e-24 Score=185.50 Aligned_cols=187 Identities=30% Similarity=0.391 Sum_probs=161.9
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++++.+++.+ +.+.+++.|.+.+++|+|++.++++|++|+..+.+... ....|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 578888876543 88889999999999999999999999999998877653 235788999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+.... |.... .|++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~--------------------------~~~~~------------------~g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNL--------------------------GWGRR------------------QGTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEecc--------------------------ccCCC------------------CcceeeEEEecHHHcEeCCCC
Confidence 9999986532 00001 238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++..+++.+.++..++|+++.....+.+|++++|+|+ +.+|.+++++++.+|+ +|+++++++++.+.+.++|++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 191 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGAD 191 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999999999999998877788999999999987 9999999999999999 899999999999998888865
No 106
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=3e-24 Score=185.37 Aligned_cols=184 Identities=29% Similarity=0.376 Sum_probs=159.8
Q ss_pred eeEEEEecCC--CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
|||+++.+++ +.+++++.|.|.+.+++|+||+.++++|++|+....+.......|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 6899999988 35999999999999999999999999999999988776543334678999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|...... ...++|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~----------------------------------------------~~~~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASL----------------------------------------------ARGGSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCC----------------------------------------------CCCccceeEEEeCHHHeEECCCCC
Confidence 9999854210 012389999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++.+++.+.+...++|+++.....+++|++++|+|+ |.+|++++++++.+|+ +|+++. ++++.+.+.++|++
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~ 187 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGAD 187 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCc
Confidence 999999999999999998878888999999999998 8999999999999999 788775 67777888888765
No 107
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.93 E-value=2.4e-24 Score=189.12 Aligned_cols=187 Identities=24% Similarity=0.241 Sum_probs=153.7
Q ss_pred eeEEEEecCCCCeEEEeeccCCC---CCCcEEEEEeEEecChhhHHhhcCCCCCCC-CCeeeeeceEEEEEEeCCCCC-c
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVT-E 84 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~---~~~evlVkv~a~~i~~~D~~~~~g~~~~~~-~p~~~G~e~vG~V~~~G~~~~-~ 84 (243)
.|++++.+.+.++++++++.|.| ++++|+||+.++++|++|+..+.+...... .|.++|||++|+|+++|++++ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE 80 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence 36899999988888888888776 899999999999999999988764332222 377899999999999999998 8
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc----ee
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SV 160 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~ 160 (243)
|++||+|+......| .+.|+|++|+.++.. .+
T Consensus 81 ~~~Gd~V~~~~~~~~--------------------------------------------~~~g~~~~~~~v~~~~~~~~~ 116 (352)
T cd08247 81 WKVGDEVCGIYPHPY--------------------------------------------GGQGTLSQYLLVDPKKDKKSI 116 (352)
T ss_pred CCCCCEEEEeecCCC--------------------------------------------CCCceeeEEEEEcccccccee
Confidence 999999986532110 012389999999987 78
Q ss_pred EEcCCCCChhhhhhcccccchhhhhhhhcC-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (243)
+++|+++++.+++.++++..|+|+++.... .+++|++|+|+|+ +.+|.+++++|+++|. ++++++. ++++.+.+++
T Consensus 117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~ 195 (352)
T cd08247 117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKK 195 (352)
T ss_pred EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHH
Confidence 999999999999999999999999877666 7999999999988 7999999999999854 3677775 4555667788
Q ss_pred hccc
Q 026087 238 ALAM 241 (243)
Q Consensus 238 ~Ga~ 241 (243)
+|++
T Consensus 196 ~g~~ 199 (352)
T cd08247 196 LGAD 199 (352)
T ss_pred hCCC
Confidence 8875
No 108
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.92 E-value=4.1e-24 Score=184.81 Aligned_cols=171 Identities=23% Similarity=0.321 Sum_probs=151.8
Q ss_pred eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCC
Q 026087 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100 (243)
Q Consensus 22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~ 100 (243)
+++++.+.|.+.+++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+.+|++++++++||+|+..+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 667788888899999999999999999999988776532 356789999999999999999999999999985421
Q ss_pred CCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccc
Q 026087 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180 (243)
Q Consensus 101 ~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ 180 (243)
+ |+|++|+.++.+.++++|+++++.+++.+.+...
T Consensus 90 ---------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 ---------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred ---------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 1 2899999999999999999999999999988999
Q ss_pred hhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 181 ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
++|.++.....+.+|++|||+|+ |.+|.+++++|+++|+ +++++.+++++.+.++++|++.
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 186 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADE 186 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCE
Confidence 99998877778899999999987 8999999999999999 8889888999999999888753
No 109
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=6.2e-24 Score=183.11 Aligned_cols=186 Identities=28% Similarity=0.344 Sum_probs=159.4
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
|||+++.+++.+ +++++.+.|.+.+++|+|++.++++|++|+.+..+.... ...|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999888765 788888888889999999999999999999988776432 24577899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|..... |+... .|+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~--------------------------~~~~~------------------~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG--------------------------GLGGL------------------QGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC--------------------------CcCCC------------------CCceeEEEEecHHHcccCCCC
Confidence 9999985421 00001 238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+++...++|+++.+...+++|++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.++++|++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~ 190 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGAD 190 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCC
Confidence 9999999998899999998778889999999999986 9999999999999999 88888887 888888888865
No 110
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.92 E-value=5.6e-24 Score=183.08 Aligned_cols=171 Identities=26% Similarity=0.364 Sum_probs=144.1
Q ss_pred cCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhh-cCCCCC--CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEee
Q 026087 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93 (243)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~ 93 (243)
+++. +++++++.|.+.++||+||+.++++|+.|+..+ .+.... +.+|.++|+|++|+|+++|++++++++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 3444 899999999999999999999999999999987 665422 234789999999999999999999999999985
Q ss_pred ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhh
Q 026087 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (243)
Q Consensus 94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa 173 (243)
.. .|+|++|+.++.+.++++|+++ ..++
T Consensus 82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~ 109 (312)
T cd08269 82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA 109 (312)
T ss_pred ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence 32 1389999999999999999988 2233
Q ss_pred hcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.+..++.++++++. ...++++++|+|+|+|.+|.+++++|+.+|+++|+++.+++++.++++++|++
T Consensus 110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~ 176 (312)
T cd08269 110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGAT 176 (312)
T ss_pred HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 22357778888764 78899999999998899999999999999994499999999999998888875
No 111
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.92 E-value=2.1e-23 Score=178.83 Aligned_cols=180 Identities=33% Similarity=0.386 Sum_probs=156.0
Q ss_pred eEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (243)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G 88 (243)
||+.+..++.+ +.+.+.+.+.+.++|++|||.++++|+.|+....+..+. .+|.++|||++|+|+.+|+++.+|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46666655543 667777777789999999999999999999998876543 457789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (243)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 168 (243)
|+|.... . .|+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG-------------------------------P------------------PGAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec-------------------------------C------------------CCceeEEEEecHHHceeCCCCCC
Confidence 9997431 0 12899999999999999999999
Q ss_pred hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
..+++.+.+...++|.++.....+.+|++|+|+|+ |.+|.+++++++.+|+ +|++++.++++.+.++++|++
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 183 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGAD 183 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCC
Confidence 99999988899999998877788999999999996 9999999999999999 899999999999999888874
No 112
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=182.73 Aligned_cols=171 Identities=30% Similarity=0.395 Sum_probs=140.6
Q ss_pred eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC----CCCeeeeeceEEEEEEeCCC----CCcCCCCCEEee
Q 026087 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIVESVGEG----VTEVQPGDHVIP 93 (243)
Q Consensus 22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~----~~p~~~G~e~vG~V~~~G~~----~~~~~~Gd~V~~ 93 (243)
...++.+.|.|++++++|++.++++|+.|+.++.|..... .+|.+++.++.|++..+.+. +..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 4557899999999999999999999999999999987554 47766665555553333322 223455554432
Q ss_pred ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhh
Q 026087 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (243)
Q Consensus 94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa 173 (243)
....|+|+||+++|...++++|+++++.++|
T Consensus 100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence 2223499999999999999999999999999
Q ss_pred hcccccchhhhhhhhcC------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 174 ~l~~~~~ta~~~~~~~~------~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
+++.++.|||.+++... ++++|++|||+|+ |++|++++|+|+..|+ ..+.+.++++++++++++|||.
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~ 205 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADE 205 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcE
Confidence 99999999999999999 9999999999976 8999999999999996 4555668999999999999985
No 113
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=5.5e-23 Score=177.18 Aligned_cols=187 Identities=34% Similarity=0.397 Sum_probs=158.9
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++++.+.+.+ +.+.+.+.|.+++++++|++.++++|+.|+.+..+.... ..+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 578888876543 677788888889999999999999999999888776432 24577899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|...+... ....|++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~--------------------------------------------~~~~g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAAD--------------------------------------------LGQYGTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEeccccc--------------------------------------------cCCCccceEEEEechHhcEeCCCC
Confidence 999998653200 001238999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+.+...++|.++.....+.++++++|+|+ |.+|.+++++++.+|+ +++.+++++++.+.++++|++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~ 191 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAA 191 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 9999999999999999998877888999999999987 9999999999999999 899999899898888877764
No 114
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.91 E-value=3.7e-23 Score=176.83 Aligned_cols=183 Identities=28% Similarity=0.341 Sum_probs=155.3
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCc
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~ 84 (243)
|||+++..++.. +.+++.+.|.++++||+||+.++++|+.|+..+.+... ....|.++|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678888876653 56778888888999999999999999999999877642 2345789999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (243)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 164 (243)
+++||+|...+.. + . .|+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~-------------------------~---~------------------~g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF-------------------------T---R------------------GGAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC-------------------------C---C------------------CCcceeEEEecHHHhccCC
Confidence 9999999854310 0 1 1389999999999999999
Q ss_pred CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
+++++..++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ +|++++.++ +.+.++++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~ 189 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGA 189 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCC
Confidence 999999999888889999998777777899999999997 9999999999999999 788887766 7888888875
No 115
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.91 E-value=9.3e-23 Score=175.52 Aligned_cols=182 Identities=29% Similarity=0.320 Sum_probs=157.0
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~ 86 (243)
||++.+...+.+ +.+++.+.+.+++++++||+.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 578888776554 667777777789999999999999999999988776533 24578999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (243)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 166 (243)
+||+|+... . .|+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALV-------------------------------A------------------GGGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEcc-------------------------------C------------------CCcceeEEEecHHHcEeCCCC
Confidence 999997431 0 128999999999999999999
Q ss_pred CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++.+++.+.++..++|.++.....++++++++|+|+ |.+|.+++++++.+|+ +|+++.+++++.+.++++|++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGAD 186 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999999998778889999999999987 9999999999999999 899998889888888877763
No 116
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.91 E-value=5.6e-24 Score=156.67 Aligned_cols=108 Identities=37% Similarity=0.689 Sum_probs=93.1
Q ss_pred CCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCC
Q 026087 34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112 (243)
Q Consensus 34 ~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 112 (243)
|+||||||++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+.+++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999994 4555899999999999999999999999999999999988999999999999999
Q ss_pred CCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087 113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (243)
Q Consensus 113 c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 163 (243)
|..... +|+. .+| +|+||+.+|.+.++|+
T Consensus 81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence 977654 3332 344 9999999999999875
No 117
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=9.1e-23 Score=175.64 Aligned_cols=171 Identities=29% Similarity=0.359 Sum_probs=148.5
Q ss_pred EEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCC
Q 026087 23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99 (243)
Q Consensus 23 ~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~ 99 (243)
++++.+.|.+.++||+|+++++++|+.|+..+.+.... ...|.++|||++|+|+++|+++.++++||+|+.....
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 77888999999999999999999999999998876521 2346789999999999999999999999999754320
Q ss_pred CCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhccccc
Q 026087 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179 (243)
Q Consensus 100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~ 179 (243)
+ . .|+|++|+..+.+.++++|+++++.+++.+.+..
T Consensus 93 -----------------------~---~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 93 -----------------------K---G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred -----------------------C---C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 0 1 1389999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 180 ~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.++|+++.....+++|++|+|+|+ |.+|++++++++.+|+ +|++++.+ ++.+.++++|++
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~ 189 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGAD 189 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCC
Confidence 999998877777999999999997 9999999999999999 88888764 788888888864
No 118
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.90 E-value=3.4e-22 Score=173.42 Aligned_cols=177 Identities=23% Similarity=0.214 Sum_probs=146.3
Q ss_pred eeEEEEecCC------CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCC
Q 026087 10 CKAAVAWEPN------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGE 80 (243)
Q Consensus 10 ~~a~~~~~~~------~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~ 80 (243)
.||+++.+.+ +.+++++++.|.+.+++|+||+.++++|+.|.....+... +...+.++|+|++|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 4677776543 1288999999999999999999999999988765554321 112345789999999999996
Q ss_pred CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc-ce
Q 026087 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (243)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 159 (243)
+ +|++||+|+.. ++|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence 4 79999999731 16999999999 99
Q ss_pred eEEcCCCCC--hhhhhh-cccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 160 VAKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 160 ~~~lp~~~~--~~~aa~-l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
++++|++++ ..+++. +.++..++|+++.....+.++++|||+|+ |.+|++++++++.+|+ +|+++++++++.+.+
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~ 186 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL 186 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 999999985 445545 88899999998877788999999999986 9999999999999999 899999999999999
Q ss_pred HH-hccc
Q 026087 236 LN-ALAM 241 (243)
Q Consensus 236 ~~-~Ga~ 241 (243)
++ +|++
T Consensus 187 ~~~~g~~ 193 (329)
T cd05288 187 VEELGFD 193 (329)
T ss_pred HhhcCCc
Confidence 88 8875
No 119
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.90 E-value=2e-22 Score=171.93 Aligned_cols=164 Identities=26% Similarity=0.346 Sum_probs=144.5
Q ss_pred cCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccC
Q 026087 29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS 107 (243)
Q Consensus 29 ~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~ 107 (243)
.|.+.+++++||+.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|+++.+|++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 46788999999999999999999998876542 2568899999999999999999999999999854210
Q ss_pred CCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhh
Q 026087 108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187 (243)
Q Consensus 108 ~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~ 187 (243)
. .|+|++|+.++.+.++++|+++++.+++.+++.+.++|.++
T Consensus 72 -------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 -------------------S------------------MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred -------------------C------------------CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 1 23899999999999999999999999999999999999976
Q ss_pred hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
....+++|++++|+++ +.+|.+++++++.+|+ +++++++++++.+.++++|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 5788999999999965 9999999999999999 899999999999999888875
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.89 E-value=7.2e-22 Score=169.66 Aligned_cols=181 Identities=34% Similarity=0.447 Sum_probs=154.4
Q ss_pred eeEEEEecCCCC--eEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087 10 CKAAVAWEPNKP--LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (243)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~ 85 (243)
|+|+++.+.+.. +++.+.+ |.+. +++++||+.++++|+.|+..+.+.... ...|.++|||++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 578888755433 7777777 7665 599999999999999999988876532 2446689999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (243)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~ 165 (243)
++||+|+.... + |++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence 99999985420 1 2899999999999999999
Q ss_pred CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+++..+++.+.....++|.++.....++++++|+|+|+ |.+|++++++++.+|+ +|+.++.++++.+.++++|++
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGAD 186 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 99998888888899999998777788999999999998 9999999999999999 799999999999998888764
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=165.97 Aligned_cols=167 Identities=25% Similarity=0.306 Sum_probs=134.7
Q ss_pred eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeC--CCCCcCCCCCEEeeecccCC
Q 026087 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAEC 99 (243)
Q Consensus 22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G--~~~~~~~~Gd~V~~~~~~~~ 99 (243)
|+++++++|+|++||||||+++.++++....-++.. +.--.|.-+|-..+|.++... |...+|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----- 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----- 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence 999999999999999999999999988443322222 221345555655554443332 556789999999732
Q ss_pred CCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh--hhhccc
Q 026087 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK--VCLLGC 177 (243)
Q Consensus 100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~--aa~l~~ 177 (243)
. +|++|..++.+.+.|++++.-+.. ...|.+
T Consensus 101 -------------------------~----------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 101 -------------------------S----------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred -------------------------c----------------------cceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 1 799999999999999986544333 344788
Q ss_pred ccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcccC
Q 026087 178 GVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAMS 242 (243)
Q Consensus 178 ~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~~ 242 (243)
+..|||.++++..+.|+|++|+|.++ |.+|..+.|+||..|+ +||++..+++|.+++++ +|+|.
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~ 199 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDA 199 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCce
Confidence 99999999999999999999999987 9999999999999999 99999999999999998 89875
No 122
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=4.8e-21 Score=166.09 Aligned_cols=180 Identities=24% Similarity=0.337 Sum_probs=148.8
Q ss_pred eEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087 11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (243)
Q Consensus 11 ~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~ 87 (243)
||+++...+. .+.+.+.+.|.+.+++|+||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4566655443 3778788888889999999999999999999998876532 245778999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (243)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 167 (243)
||+|+.... .|+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR-------------------------------------------------FGGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC-------------------------------------------------CCeeeeEEEecHHHeEECCCCC
Confidence 999985321 1289999999999999999999
Q ss_pred ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHhccc
Q 026087 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++.+++.+.+...++|+++.....+++|++|+|+|+ |.+|++++++++.+ +. .++.. .++++.+.+.++|++
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~ 185 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVT 185 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCc
Confidence 999999998899999998877888999999999998 99999999999999 43 33332 345577888777764
No 123
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.87 E-value=2.6e-21 Score=163.50 Aligned_cols=152 Identities=26% Similarity=0.276 Sum_probs=136.7
Q ss_pred CcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 026087 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (243)
Q Consensus 35 ~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (243)
+|++||+.++++|++|++...+..+ .+|.++|||++|+|+++|++++.|++||+|....
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 5899999999999999999987652 4578999999999999999999999999997531
Q ss_pred CccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCC
Q 026087 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (243)
Q Consensus 115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~ 194 (243)
.|+|++|+.++.+.++++|+++++.+++.+.++..++|.++.....+++
T Consensus 60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1389999999999999999999999999988899999998877788999
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
|++|+|+|+ |.+|++++++++.+|+ ++++++.++++.+.++++|
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 153 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELG 153 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhC
Confidence 999999975 9999999999999999 8999988888999888887
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.85 E-value=1.9e-20 Score=158.14 Aligned_cols=148 Identities=26% Similarity=0.322 Sum_probs=133.6
Q ss_pred EEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccC
Q 026087 39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118 (243)
Q Consensus 39 Vkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~ 118 (243)
||+.++++|+.|+..+.+.++ .|.++|||++|+|+++|++++.|++||+|....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 899999999999999987653 357899999999999999999999999997431
Q ss_pred CCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEE
Q 026087 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198 (243)
Q Consensus 119 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~v 198 (243)
.|+|++|+.++.+.++++|+++++.+++.+.+...++|.++.....+++|++|
T Consensus 56 ---------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 ---------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ---------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 13899999999999999999999999999998999999987777889999999
Q ss_pred EEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 199 lV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|+
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~ 150 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGI 150 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99986 9999999999999999 89999999999999998887
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.77 E-value=3.7e-18 Score=144.84 Aligned_cols=129 Identities=33% Similarity=0.411 Sum_probs=114.5
Q ss_pred CCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCcccccc
Q 026087 56 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135 (243)
Q Consensus 56 g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~ 135 (243)
|.++. ++|.++|||++|+|+++|+++++|++||+|+...
T Consensus 14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---------------------------------------- 52 (277)
T cd08255 14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG---------------------------------------- 52 (277)
T ss_pred cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----------------------------------------
Confidence 33333 5889999999999999999999999999997421
Q ss_pred CCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 026087 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK 215 (243)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~ 215 (243)
.|++|+.++.+.++++|+++++.+++.+ .+..++|+++ ...++++++++||+|+|.+|++++++|+
T Consensus 53 ------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~ 118 (277)
T cd08255 53 ------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK 118 (277)
T ss_pred ------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 5889999999999999999999988888 7889999976 4688999999999988999999999999
Q ss_pred HcCCCEEEEEcCChhHHHHHHHhc
Q 026087 216 AAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 216 ~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
.+|+++|+++++++++.++++++|
T Consensus 119 ~~g~~~vi~~~~~~~~~~~~~~~g 142 (277)
T cd08255 119 AAGAREVVGVDPDAARRELAEALG 142 (277)
T ss_pred HcCCCcEEEECCCHHHHHHHHHcC
Confidence 999944999999999999999988
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.70 E-value=1.9e-15 Score=125.94 Aligned_cols=163 Identities=25% Similarity=0.267 Sum_probs=122.2
Q ss_pred EEEeeccC-CCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCe-----eeeeceEEEEEEeCCCCCcCCCCCEEeeec
Q 026087 23 VIEDVQVA-PPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPC-----ILGHEAAGIVESVGEGVTEVQPGDHVIPCY 95 (243)
Q Consensus 23 ~~~~~~~p-~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~-----~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~ 95 (243)
+..+.+++ .+.+++|+||.++.+..|.....+....+.. -.|. +.| ..+|+|++. +-.+|++||.|...
T Consensus 25 ~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g-~GV~kVi~S--~~~~~~~GD~v~g~- 100 (343)
T KOG1196|consen 25 TTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDG-FGVAKVIDS--GHPNYKKGDLVWGI- 100 (343)
T ss_pred eeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecC-CceEEEEec--CCCCCCcCceEEEe-
Confidence 33444433 4588999999999999776644333222211 1122 334 679999994 55789999999532
Q ss_pred ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCC--CCChhh
Q 026087 96 QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDP--QAPLDK 171 (243)
Q Consensus 96 ~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~--~~~~~~ 171 (243)
. +|.+|.++++. ..++++. +..+..
T Consensus 101 -----------------------------~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ 129 (343)
T KOG1196|consen 101 -----------------------------V----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSY 129 (343)
T ss_pred -----------------------------c----------------------cceEEEEecCcchhcccCCCCCccCHhh
Confidence 2 69999999764 3445543 344333
Q ss_pred -hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087 172 -VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM 241 (243)
Q Consensus 172 -aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~ 241 (243)
...+.++.+|||..+++....++|++|+|-|| |++|.++.|+|+.+|| +|++...+++|.+++++ +|+|
T Consensus 130 ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d 201 (343)
T KOG1196|consen 130 YLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFD 201 (343)
T ss_pred hhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCc
Confidence 34468899999999999999999999999987 9999999999999999 99999999999999985 6876
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.54 E-value=4.5e-14 Score=134.25 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=133.8
Q ss_pred eEEEeeccC--C-CCCCcEEEEEeEEecChhhHHhhcCCCCCCCC-------CeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087 22 LVIEDVQVA--P-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGIVESVGEGVTEVQPGDHV 91 (243)
Q Consensus 22 ~~~~~~~~p--~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~-------p~~~G~e~vG~V~~~G~~~~~~~~Gd~V 91 (243)
+++.+.|.. . ..++.=+--|-|+.||..|+....|+.+.... .+++|-|++|+ .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 666666654 2 36677788999999999999999998765433 36899999988 3559999
Q ss_pred eeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh
Q 026087 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (243)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~ 171 (243)
+...- . -+++..+.++.+.+|.+|.+...++
T Consensus 1499 M~mvp------------------------------A-------------------ksLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP------------------------------A-------------------KSLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeee------------------------------h-------------------hhhhhhhhcchhhhhhCCcccchhh
Confidence 64421 0 1688889999999999999999999
Q ss_pred hhhcccccchhhhhhhhcCCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
|++.++.+.|+|+|+..+...|+|++|||++ +|++|.+||.+|.+.|+ +|+.+..+.+|.+++++.
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~r 1596 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKR 1596 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHh
Confidence 9999999999999999999999999999995 59999999999999999 999999999999998764
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.13 E-value=6.5e-06 Score=75.59 Aligned_cols=50 Identities=32% Similarity=0.341 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+..++++|+|+|+|.+|+++++.|+.+|+ +|+++|.+++|++.++++|++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence 35789999999999999999999999999 899999999999999999987
No 129
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.72 E-value=0.00011 Score=65.91 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=50.1
Q ss_pred hhhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 183 ~~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+.++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|++.++++|++
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~ 247 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYE 247 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCE
Confidence 344444444 4789999999999999999999999999 899999999999999999985
No 130
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.45 E-value=0.00034 Score=64.33 Aligned_cols=50 Identities=32% Similarity=0.343 Sum_probs=46.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
..++++++|+|+|.+|++++++++.+|+ +|++++.++++++.++++|++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~ 210 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF 210 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence 3567999999999999999999999999 7999999999999999999864
No 131
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.40 E-value=3.8e-06 Score=75.82 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=85.3
Q ss_pred eeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecC
Q 026087 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG 145 (243)
Q Consensus 66 ~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 145 (243)
.-|.|+++-+.+++++++. +|++.+.. ||.|.+| .+.|..... .|.. .++
T Consensus 89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~---------------- 138 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER---------------- 138 (417)
T ss_pred cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH----------------
Confidence 4688899999999988765 56666665 8888888 333332221 1211 222
Q ss_pred CcceeeEEEeccceeEE---c-CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCE
Q 026087 146 TSTFSQYTVVHDVSVAK---I-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 221 (243)
Q Consensus 146 ~g~~~~~~~~~~~~~~~---l-p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~ 221 (243)
.|++++.++. .+.. + +..+|...+|. ....+..+..++++|+|+|+|.+|..+++.++..|+.+
T Consensus 139 --lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~ 206 (417)
T TIGR01035 139 --LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK 206 (417)
T ss_pred --HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence 7888777765 2221 2 22233222211 10123334467899999999999999999999999668
Q ss_pred EEEEcCChhHHH-HHHHhcc
Q 026087 222 VIGIDIDPKKFD-RVLNALA 240 (243)
Q Consensus 222 vi~~~~~~~~~~-~~~~~Ga 240 (243)
|++++++.++.+ +++++|.
T Consensus 207 V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 207 ILIANRTYERAEDLAKELGG 226 (417)
T ss_pred EEEEeCCHHHHHHHHHHcCC
Confidence 999999988754 5556664
No 132
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.20 E-value=0.0019 Score=54.32 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=53.2
Q ss_pred eeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 149 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 149 ~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
|.++.. +....+.+++++++..+.--. |.. ++... ...+++++||-+|+|. |.+++.+++ .|+.+|+++|.
T Consensus 79 ~~~~~~-~~~~~i~i~p~~afgtg~h~t----t~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi 150 (250)
T PRK00517 79 WEDPPD-PDEINIELDPGMAFGTGTHPT----TRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI 150 (250)
T ss_pred CcCCCC-CCeEEEEECCCCccCCCCCHH----HHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence 554433 567778888887766443111 111 12111 1256889999999987 888876554 67767999999
Q ss_pred ChhHHHHHHH
Q 026087 228 DPKKFDRVLN 237 (243)
Q Consensus 228 ~~~~~~~~~~ 237 (243)
++..++.+++
T Consensus 151 s~~~l~~A~~ 160 (250)
T PRK00517 151 DPQAVEAARE 160 (250)
T ss_pred CHHHHHHHHH
Confidence 9988877654
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.15 E-value=0.00043 Score=60.13 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=61.4
Q ss_pred ceeEEcCCCCChhhhhhcccccchhhhhhhhcCC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH-H
Q 026087 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-D 233 (243)
Q Consensus 158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~---~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~-~ 233 (243)
...+++|+.+..+.+.... +.+.++.++..... -.++.+|+|+|+|.+|..+++.++..|+.+|++++++.+|. +
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3556778888877766654 55566665432222 24789999999999999999999998877899999998775 6
Q ss_pred HHHHhccc
Q 026087 234 RVLNALAM 241 (243)
Q Consensus 234 ~~~~~Ga~ 241 (243)
++.++|++
T Consensus 218 la~~~g~~ 225 (311)
T cd05213 218 LAKELGGN 225 (311)
T ss_pred HHHHcCCe
Confidence 66777763
No 134
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.03 E-value=0.0022 Score=57.85 Aligned_cols=58 Identities=29% Similarity=0.352 Sum_probs=46.6
Q ss_pred hhhhhhcCCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 183 ~~~~~~~~~~-~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
|.++.+..++ ..|++|+|+|.|.+|..+++.++.+|+ +|++++.++.|...+...|++
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~ 257 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR 257 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence 4444444344 489999999999999999999999999 899999998887666666654
No 135
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.96 E-value=0.0028 Score=56.86 Aligned_cols=57 Identities=26% Similarity=0.326 Sum_probs=46.5
Q ss_pred hhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 184 ~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.++.+..+ ...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+.
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~ 240 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR 240 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE
Confidence 33434433 4789999999999999999999999999 899999888887777777764
No 136
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.91 E-value=0.0041 Score=47.19 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
-.+.+++|+|+|.+|.+++..+...|+++|+.+.++.+|.+.+.+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE 54 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999889999999988766643
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.79 E-value=0.0056 Score=52.79 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.+++++|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence 68999999999999999999999999 999999998888888888765
No 138
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.70 E-value=0.0033 Score=59.07 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---------------------hhHHHHHHHhccc
Q 026087 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRVLNALAM 241 (243)
Q Consensus 191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~---------------------~~~~~~~~~~Ga~ 241 (243)
..++|++|+|+|+|+.|+++++.++.+|+ +|++++.. +++++.++++|++
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~ 203 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVE 203 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCE
Confidence 46789999999999999999999999999 78888742 3567778888875
No 139
>PLN02494 adenosylhomocysteinase
Probab=96.63 E-value=0.0068 Score=55.18 Aligned_cols=58 Identities=33% Similarity=0.386 Sum_probs=46.8
Q ss_pred hhhhhhcCCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 183 ~~~~~~~~~~-~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+.++.+..++ ..|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~ 299 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ 299 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence 3344454443 679999999999999999999999999 899999988776666666653
No 140
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.52 E-value=0.0091 Score=47.02 Aligned_cols=47 Identities=36% Similarity=0.425 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+..+|+|+|+|.+|..|+.+++.+|+ +++..+...++++.....++.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~ 65 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAY 65 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCc
Confidence 34789999999999999999999999 899999998888887776653
No 141
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.38 E-value=0.0097 Score=53.93 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=47.6
Q ss_pred ccchhhhhhhhcC---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHHhcc
Q 026087 178 GVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RVLNALA 240 (243)
Q Consensus 178 ~~~ta~~~~~~~~---~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~-~~~~~Ga 240 (243)
+.+.++.++.... +..++++|+|+|+|.+|.++++.++..|+.+|++++++.++.+ ++.++|+
T Consensus 162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~ 228 (423)
T PRK00045 162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG 228 (423)
T ss_pred CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence 4445555543222 2367899999999999999999999999878999999988855 6666664
No 142
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.99 E-value=0.02 Score=50.96 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence 34569999999999999999999999 89999999888776653
No 143
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.97 E-value=0.022 Score=48.93 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.|++++|+|.|.+|...+..++.+|+ +|+++++++++.+.+.++|+.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~ 196 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLI 196 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe
Confidence 57899999999999999999999999 899999998887766666643
No 144
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.92 E-value=0.027 Score=45.71 Aligned_cols=49 Identities=37% Similarity=0.426 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM 241 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~ 241 (243)
--.|.+++|+|.|.+|..+++.+...|+ +|++++.++++.+.+.+ +|+.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~ 74 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT 74 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence 3467899999999999999999999999 89999999888776654 3543
No 145
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.89 E-value=0.027 Score=47.75 Aligned_cols=49 Identities=29% Similarity=0.567 Sum_probs=41.2
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHHh
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~-~vi~~~~~~~~~~~~~~~ 238 (243)
...+++|++||.+|+|. |..++++++..|.. +|+++|.+++.++.+++.
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~ 121 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN 121 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence 35688999999999988 88888888887753 799999999998888764
No 146
>PRK04148 hypothetical protein; Provisional
Probab=95.81 E-value=0.025 Score=42.76 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.+++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++.+.+
T Consensus 14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~ 61 (134)
T PRK04148 14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN 61 (134)
T ss_pred cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe
Confidence 3456889999999 88755666668899 999999999999888877654
No 147
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.80 E-value=0.032 Score=44.32 Aligned_cols=47 Identities=38% Similarity=0.453 Sum_probs=38.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
--.|.+|.|+|.|.+|...++.++.+|+ +|+++++..+..+...+.+
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence 3468999999999999999999999999 9999998887655344444
No 148
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.75 E-value=0.043 Score=50.13 Aligned_cols=49 Identities=31% Similarity=0.355 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.-.|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~ 299 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ 299 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce
Confidence 4589999999999999999999999999 899998887766444445553
No 149
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.46 E-value=0.067 Score=45.86 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
..+.+|+|+|+|+.|.+++..+..+|+++|+.++++.+|.+.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 35678999999999999999999999989999999988876553
No 150
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.06 Score=46.09 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
..+++++|+|+|+.+.+++..++..|+.+|+++.|+.+|.+.+.+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 357999999999999999999999998899999999998766654
No 151
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.24 E-value=0.09 Score=44.79 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
...+++++|+|+|+.+.+++..++.+|+.+|+++.++.+|.+.+.
T Consensus 119 ~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 119 VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 344568999999999999999999999988999999988876654
No 152
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.20 E-value=0.064 Score=45.93 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.+.+++|+|+|..+.+++..+..+|+++|+++.++.+|.+.+.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 5789999999999999999999999989999999988776553
No 153
>PRK08324 short chain dehydrogenase; Validated
Probab=95.09 E-value=0.059 Score=51.89 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=52.5
Q ss_pred ceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 026087 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 148 ~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
++++|..++...++.+ +..+.+++..... ......+|+++||+|+ |.+|...++.+...|+ +|+.++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 4566666666655555 4444444432100 0122346799999987 9999999999999999 899999
Q ss_pred CChhHHHHHH
Q 026087 227 IDPKKFDRVL 236 (243)
Q Consensus 227 ~~~~~~~~~~ 236 (243)
++.++.+.+.
T Consensus 454 r~~~~~~~~~ 463 (681)
T PRK08324 454 LDEEAAEAAA 463 (681)
T ss_pred CCHHHHHHHH
Confidence 9888765544
No 154
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.91 E-value=0.13 Score=44.18 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
..+++++|+|+|+.+.+++..+..+|+.+++.+.++.+|.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 34688999999999999988888899989999999988866554
No 155
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.91 E-value=0.092 Score=44.81 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
..+.+++|+|+|.+|.+++..+...|+.+|++++++.++.+.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 45678999999999999999999999669999999988876554
No 156
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.53 E-value=0.15 Score=39.79 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=35.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
.-.|++++|.|=|.+|...++.++.+|+ +|++++.++-+.-.+..-|+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf 67 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGF 67 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCc
Confidence 5688999999999999999999999999 99999999877655544444
No 157
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.53 E-value=0.13 Score=48.31 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=40.0
Q ss_pred hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
...+.+.|++|||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4556788999999998 9999999999999999 899999988876543
No 158
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.47 E-value=0.22 Score=42.68 Aligned_cols=44 Identities=32% Similarity=0.467 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
.+++++||-+|+|+ |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 46789999999988 887777665 576699999999987776654
No 159
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.15 Score=42.49 Aligned_cols=43 Identities=33% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~-g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
...++++||+|+ | ++|...++.+...|+ +|+.+++++++++..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET 58 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 445789999987 6 799999999999999 799988887766544
No 160
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.14 E-value=0.24 Score=42.57 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+++++|+|+|++|.+++..+...|+++|+.+++++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 568899999999999988888899997799998885
No 161
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.13 E-value=0.14 Score=44.53 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.|++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 5889999998 8999998888888899 899999999887654
No 162
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.17 Score=43.36 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+.++||+|+ |.+|...++.+...|+ +|+.++++.++++.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 3578999987 9999999998888999 899999988776544
No 163
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.05 E-value=0.24 Score=42.52 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.++++||+|+|+.+.+++..+..+|+++|+++.+++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 567999999998898877777788998999999885
No 164
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.01 E-value=0.16 Score=46.66 Aligned_cols=36 Identities=42% Similarity=0.582 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
+.+++|+|+|+|+.|+.++..++..|. +|+.++..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 367899999999999999999999999 788887654
No 165
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.94 E-value=0.2 Score=41.68 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=35.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
++.++||.|+ |.+|...++.+...|+ +|+.++++.++++.+.
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAA 53 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 4688999987 9999999999888999 8999998887765443
No 166
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.22 Score=41.24 Aligned_cols=43 Identities=30% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~ 57 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ 57 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4679999998 9999999988888999 89999888765444433
No 167
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.79 E-value=0.16 Score=48.69 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
..+++|+|+|+|+.|+.++..++.+|+ +|++++..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 357899999999999999999999999 798888654
No 168
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.76 E-value=0.29 Score=38.59 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=34.3
Q ss_pred cCCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 189 TAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
...--.|.+|+|+|+|. +|..++..++..|+ +|+.+.++.+.+
T Consensus 38 ~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l 81 (168)
T cd01080 38 YGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL 81 (168)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence 33346889999999986 59999999999999 788887775433
No 169
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.22 Score=43.12 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+++++|+|+ +++|...+..+...|+ +|+.+.+++++.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~ 54 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA 54 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4688999988 8999999998888999 899988888765443
No 170
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.71 E-value=0.23 Score=41.04 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (243)
Q Consensus 191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~ 234 (243)
...++.++||.|+ |.+|...++.+...|+ +|+.++++.++.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~ 51 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEA 51 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Confidence 3557889999987 9999998888888899 89999988766433
No 171
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.64 E-value=0.45 Score=36.30 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNAL 239 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~G 239 (243)
..+.+++|+|+|.+|...+..+...|..+|++++++.++.+.+ .+++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 4568899999999999999888888744899999988776553 4444
No 172
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.56 E-value=0.23 Score=35.97 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=36.8
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~ 43 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE 43 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc
Confidence 5788999999999999999765 899999999999998887743
No 173
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.53 E-value=0.23 Score=39.77 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.+.+++|+|+ |.+|...+..+...|+ +|+.++++.++.+.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA 69 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 5689999987 9999988888888898 8999988887765543
No 174
>PRK06196 oxidoreductase; Provisional
Probab=93.53 E-value=0.24 Score=42.75 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+.++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999988 9999999998888999 899998888766543
No 175
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.50 E-value=0.35 Score=41.01 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
..++++++|+|+|.+|.+.+..+...|+ +|+++++++++.+.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL 156 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3557899999999999999888888898 899999988776544
No 176
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=93.48 E-value=0.097 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=15.7
Q ss_pred eeEEEEecCCCCeEEEeeccCCC
Q 026087 10 CKAAVAWEPNKPLVIEDVQVAPP 32 (243)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~ 32 (243)
|||+++.++++ +++++++.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 79999999998 99999998864
No 177
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=93.38 E-value=0.25 Score=42.90 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=45.5
Q ss_pred hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHHhcccC
Q 026087 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID---IDPKKFDRVLNALAMS 242 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~---~~~~~~~~~~~~Ga~~ 242 (243)
....++||.++||-.. |.+|+..+-++...|+ ++|.+- .+.+|...++++|+..
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaei 153 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEI 153 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEE
Confidence 4567999999999986 9999999999999999 777774 3457889999999864
No 178
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.35 E-value=0.29 Score=35.05 Aligned_cols=43 Identities=37% Similarity=0.580 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHHh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
|+++||-+|+|. |.+++.+++ ..++ +|++++.+++-++.+++.
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~ 44 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARER 44 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHH
Confidence 688999998865 666667777 5677 899999999988887653
No 179
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.33 E-value=0.28 Score=39.53 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=39.6
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~ 236 (243)
....+.++++||-+|+|. |.+++++++.++ ..+|++++.+++.++.++
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 456788999999999988 899999998765 248999999998877654
No 180
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.26 E-value=0.2 Score=44.85 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=43.7
Q ss_pred hhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 183 ~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
+..+.....+++|++||-+|+| .|.++..+++..|+ +|++++.+++.++.+++.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence 3445567788999999999985 56677788888898 999999999988888764
No 181
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.03 E-value=0.24 Score=47.32 Aligned_cols=35 Identities=37% Similarity=0.455 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 48999999999999999999999999 788888665
No 182
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.3 Score=41.93 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~ 233 (243)
..++++||.|+ |.+|...+..+...|+ +|+.+.++.++.+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~ 54 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK 54 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 35689999987 9999999998888899 8888888877654
No 183
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=92.89 E-value=0.23 Score=42.36 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=34.5
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+..+.++++|++||-+|+| -|.++..+++..|+ +|++++.+++-.+.+++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARE 103 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHH
Confidence 5678899999999999987 56667778888899 99999999887766643
No 184
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.76 E-value=0.43 Score=43.15 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-Hhc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NAL 239 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~G 239 (243)
-.+.+++|+|+|.+|.+++..+...|+.+++++.++.+|.+.+. +++
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 45789999999999999999999999878999999987755443 344
No 185
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.57 E-value=0.42 Score=43.90 Aligned_cols=47 Identities=32% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHHhccc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRVLNALAM 241 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-----~~~~~~~~Ga~ 241 (243)
.+++|+|+|+|.+|+.++.+++..|+ +|++++.++. ..+.+++.|+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~ 66 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGAT 66 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCE
Confidence 46789999999999999999999999 8999885542 23455666653
No 186
>PLN02253 xanthoxin dehydrogenase
Probab=92.56 E-value=0.42 Score=40.24 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~ 234 (243)
.++++||.|+ |.+|...+..+...|+ +|+.+++++++.+.
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~ 57 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN 57 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 4678999987 9999998888888999 89999887765443
No 187
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.55 E-value=0.41 Score=39.83 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.++++||+|+ +.+|...++.+...|+ +|+.++++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5689999988 9999999999999999 88888776
No 188
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.38 E-value=0.49 Score=38.91 Aligned_cols=37 Identities=35% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|.+|+|.|-|.+|..+++.+..+|++.|.+.|.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 4688999999999999999999999995555566666
No 189
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.37 E-value=0.33 Score=40.14 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~--~vi~~~~~ 228 (243)
-.+.+++|+|+|..|..++..+...|++ +++.++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4567999999999999999988999997 89999988
No 190
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.26 E-value=0.4 Score=32.44 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=29.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
+|+|+|+|.+|+-.+..++.+|. +|..+.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence 57899999999999999999998 8888887664
No 191
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.12 E-value=0.6 Score=42.05 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHHhcccC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRVLNALAMS 242 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~-~~~~~~Ga~~ 242 (243)
-.+.++||+|+|-+|.+++..+...|..+|+++.++.+|. ++++++|+.+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~ 226 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEA 226 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCee
Confidence 4778999999999999999999999988999998888875 4566788554
No 192
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=92.09 E-value=0.64 Score=33.66 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=37.7
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
....+.++++|+-+|+|. |..+..+++..+..+++++|.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 344566788898899876 888888888875448999999998877764
No 193
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.96 E-value=0.29 Score=45.99 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=41.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~ 462 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIR 462 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCe
Confidence 678999999999999999999999 899999999999999887754
No 194
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.83 E-value=0.77 Score=41.87 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE-cCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI-DID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~-~~~ 228 (243)
--.|.+|+|.|.|.+|..+++.+..+|+ +|+++ |.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 3478999999999999999999999999 88844 444
No 195
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.79 E-value=0.61 Score=41.75 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
-.|.+|.|.|-|.+|..+++.+..+|+ +|++++-+..
T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 589999999999999999999999999 8888865554
No 196
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.60 E-value=0.31 Score=41.98 Aligned_cols=43 Identities=40% Similarity=0.643 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.++|++||=+|+|+ |++++..++ +|+++|+++|.++.-.+.++
T Consensus 159 ~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 159 VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence 67888988887632 444444444 58889999999987665554
No 197
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.58 E-value=0.55 Score=43.90 Aligned_cols=42 Identities=33% Similarity=0.480 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.++++||+|+|++|.+++..+...|+ +|+.+.++.++.+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 46789999999999999999999999 8999998887765554
No 198
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=91.56 E-value=0.75 Score=39.63 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=42.2
Q ss_pred hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE--cCChhHHHHHHHhcccC
Q 026087 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRVLNALAMS 242 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~--~~~~~~~~~~~~~Ga~~ 242 (243)
.....++||+ .+|-+. |.+|+..+.+|+.+|++-++++ ..+.+|.++++.+||..
T Consensus 54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAev 111 (300)
T COG0031 54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEV 111 (300)
T ss_pred HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Confidence 4556699999 455565 9999999999999999444444 25668999999999863
No 199
>PRK06484 short chain dehydrogenase; Validated
Probab=91.44 E-value=0.6 Score=43.16 Aligned_cols=44 Identities=34% Similarity=0.429 Sum_probs=37.4
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
..|+++||.|+ +.+|...++.+...|+ +|+.+++++++++.+.+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~ 311 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAE 311 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 46789999987 9999999999999999 89999998887766543
No 200
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.32 E-value=0.47 Score=39.80 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
..|-.+++|+|+|.++...+++|+.+|+ +|+++|.+++
T Consensus 97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 4677899999999999999999999999 8999886654
No 201
>PLN00203 glutamyl-tRNA reductase
Probab=91.31 E-value=0.53 Score=43.87 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=37.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999998789999999888766543
No 202
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.30 E-value=0.58 Score=40.83 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
.-.|++|.|+|-|.+|...++.++..|. +|++.++..+..+.+...|+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence 4578999999999999999999999999 88887665555555555555
No 203
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.14 E-value=0.5 Score=41.45 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=35.8
Q ss_pred hhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 181 ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
|||.-+..+..+ ++.+|||+|+ |-+|...+..+...|. +|+++++..
T Consensus 2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~ 49 (348)
T PRK15181 2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS 49 (348)
T ss_pred chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 566644333333 4478999987 9999999999999998 899998744
No 204
>PLN03139 formate dehydrogenase; Provisional
Probab=91.06 E-value=0.53 Score=42.19 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
.|++|.|+|.|.+|...++.++.+|+ +|++++++....+...+.|
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g 242 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG 242 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence 67899999999999999999999999 8999987654333334444
No 205
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.90 E-value=0.46 Score=45.30 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
.++|+|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~ 445 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMK 445 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCe
Confidence 3689999999999999999999999 899999999999999887754
No 206
>PRK06720 hypothetical protein; Provisional
Probab=90.86 E-value=1 Score=35.42 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~ 233 (243)
++.+++|.|+ +.+|...+..+...|+ +|+.++++++..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5778999987 7899998888888898 8999988776553
No 207
>PRK07574 formate dehydrogenase; Provisional
Probab=90.57 E-value=0.66 Score=41.55 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G 239 (243)
.|.+|.|+|.|.+|...++.++.+|+ +|++.++.....+....+|
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g 235 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG 235 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence 57899999999999999999999999 9999987653333333333
No 208
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.50 E-value=1.2 Score=30.95 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=33.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcC---CCEEE-EEcCChhHHHHHH-Hhc
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDRVL-NAL 239 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G---~~~vi-~~~~~~~~~~~~~-~~G 239 (243)
+|.|+|+|.+|.+.+.-....| . +|+ ++++++++.+.+. +++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhc
Confidence 4678899999999888888888 6 777 5489999887764 444
No 209
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.48 E-value=0.62 Score=40.72 Aligned_cols=37 Identities=35% Similarity=0.568 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
-.|+++.|+|.|.+|.+.+..++..|+ +|+..++...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~ 180 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN 180 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence 358999999999999999999999999 8999988764
No 210
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.45 E-value=0.68 Score=39.59 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.|+.|+|.|+ +++|...+--...+|+ +++.+.+..++++.+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v 52 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV 52 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence 5688999998 8999988888888899 677777777776665
No 211
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.39 E-value=0.81 Score=38.00 Aligned_cols=41 Identities=27% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~ 233 (243)
-.++.+|||+|+ |.+|...+..+...|+ +|+++.++.++..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~ 55 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAK 55 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHH
Confidence 334679999997 9999999988888898 8988888776643
No 212
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.34 E-value=0.9 Score=41.02 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=33.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~ 233 (243)
.+++++|.|+ |.+|...+..+...|+ +|+++++++++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 4679999988 9999999988888999 8999888776654
No 213
>PRK14967 putative methyltransferase; Provisional
Probab=90.15 E-value=1.2 Score=36.56 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=37.0
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
...++++++||-.|+|. |..++.+++. ++.+|++++.+++.++.+++
T Consensus 31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 34567889999999987 8888888875 55589999999987775543
No 214
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.13 E-value=0.38 Score=34.49 Aligned_cols=35 Identities=34% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.|.+|||+|+|.+|..-++.+...|+ +|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 57899999999999999999999999 899887663
No 215
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.90 E-value=0.86 Score=35.44 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
.|.+|||+|+|.+|.--++.+...|+ +|.+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 56889999999999998888888999 788774
No 216
>PLN02928 oxidoreductase family protein
Probab=89.88 E-value=0.67 Score=40.93 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
-.|+++.|+|.|.+|...++.++.+|+ +|++++++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 357899999999999999999999999 99999875
No 217
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.86 E-value=0.88 Score=37.92 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=30.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.++++||.|+ |.+|...++.+...|+ +|+++++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 3578999988 8999999999999999 898888765
No 218
>PLN02686 cinnamoyl-CoA reductase
Probab=89.85 E-value=1 Score=39.96 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
..+++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.+.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~ 94 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLR 94 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 44689999987 9999999999999999 8887766665544433
No 219
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=89.76 E-value=0.71 Score=30.42 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.5
Q ss_pred EEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 200 V~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
|+|+|..|+.++..++..|. +|.+++.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence 67999999999999999999 9999987653
No 220
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.75 E-value=0.98 Score=38.94 Aligned_cols=43 Identities=33% Similarity=0.354 Sum_probs=35.6
Q ss_pred CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~-a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+-|+|.+|.|+ .++|.. |-++|+ .|. +|+-+.|+++|++.+++
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~k 91 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAK 91 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH
Confidence 45799999998 789976 666666 999 89999999999987754
No 221
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.43 E-value=0.92 Score=43.56 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+++|+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 3457899999999999999999999999 788887654
No 222
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.33 E-value=0.71 Score=43.88 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=40.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+.|+|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~ 445 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYK 445 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCe
Confidence 578999999999999999999999 899999999999999888753
No 223
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.33 E-value=1.1 Score=39.38 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
.|++|.|+|.|.+|...+..++.+|+ +|++++++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 89999876543
No 224
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.13 E-value=0.85 Score=38.09 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=31.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
+.+|+|+|+|++|..++..+..+|.++++.+|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 47899999999999999999999999999987544
No 225
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.10 E-value=1.3 Score=38.65 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=39.6
Q ss_pred hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (243)
.....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.+++
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~ 123 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 123 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 345668899999999997 49999999998763 369999999987665543
No 226
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.09 E-value=0.89 Score=36.84 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|+|+|.|++|...+..+..+|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45789999999999999999999999899999866
No 227
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.03 E-value=1.3 Score=38.97 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=35.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~ 236 (243)
-.+.+|+|+|+ |.+|...+..+.. .|..+++.+.++++++..+.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 46789999998 8999988887764 57668999998887776653
No 228
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.02 E-value=1.7 Score=34.76 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=39.1
Q ss_pred hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HHhccc
Q 026087 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV----LNALAM 241 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~----~~~Ga~ 241 (243)
+.+..+++|+.++=+|+|+ |..++++++.....+|++++++++.++.. ++||.+
T Consensus 27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence 3566789999777778743 55567888666566999999999887665 456654
No 229
>PRK08328 hypothetical protein; Provisional
Probab=88.93 E-value=0.88 Score=37.72 Aligned_cols=36 Identities=39% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+|+|+|+|++|..++..+..+|.++++.+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 346799999999999999999999999999987543
No 230
>PRK14030 glutamate dehydrogenase; Provisional
Probab=88.83 E-value=1.5 Score=40.01 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
-.|.+|+|.|-|.+|..+++.+..+|+ +|+++
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav 257 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI 257 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 468999999999999999999999999 88884
No 231
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.70 E-value=0.68 Score=40.50 Aligned_cols=33 Identities=48% Similarity=0.741 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
.|++|.|+|.|.+|...++.++.+|+ +|++.+.
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 37899999999999999999999999 9999987
No 232
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.64 E-value=1.2 Score=38.15 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
--.|+.|||.|+ +++|.+.++-...+|+ +++.+|.+.+.
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~ 74 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG 74 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc
Confidence 346899999987 7999988888888899 89898877764
No 233
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.62 E-value=1.1 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+|+|.|+|.+|...+..+...|.++++.+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999999899999744
No 234
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.50 E-value=1.6 Score=29.95 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
-.+++++|+|.|.+|...++.+...+..++.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46789999999999999999999886557777754
No 235
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.50 E-value=1.5 Score=38.27 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
-.|.+++|+|+ +++|..++..+...|+ +|+...++.++.+.++
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~ 76 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK 76 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence 34578899998 8999999999999998 8999989887665554
No 236
>PRK13984 putative oxidoreductase; Provisional
Probab=88.48 E-value=1.3 Score=42.02 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+++++|+|+|+|..|+.++..++.+|. +|++++..+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 5678999999999999999999999999 788886543
No 237
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.46 E-value=1.3 Score=42.66 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV 454 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 4689999987 9999999998888999 899999887765543
No 238
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.45 E-value=2 Score=39.66 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.+.+++|+|+|.+|.+++..+...|+ +++.+++++++.+.+.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la 372 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA 372 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 56789999999999999999999999 8998888887766543
No 239
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.29 E-value=1.6 Score=40.13 Aligned_cols=48 Identities=21% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHHhcc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RVLNALA 240 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~-~~~~~Ga 240 (243)
.-.+++|+|+|.|..|.+++.+++..|+ .|++.|++..+.. ++.++|+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi 60 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGV 60 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCc
Confidence 3345679999999999999999999999 8999987655433 3345554
No 240
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.14 E-value=1.1 Score=38.96 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|.|+|-|.+|...+..++.+|+ +|++.++.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~ 177 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTS 177 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCC
Confidence 68999999999999999999999999 99999864
No 241
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.13 E-value=0.79 Score=39.65 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=37.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.+|.|+|+|.+|.-++.+|.-+|+ +|...+.+.+|+..+.++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~ 210 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL 210 (371)
T ss_pred ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh
Confidence 456777999999999999999999 899999999999888653
No 242
>PLN03013 cysteine synthase
Probab=88.10 E-value=1.6 Score=39.60 Aligned_cols=54 Identities=22% Similarity=0.154 Sum_probs=41.5
Q ss_pred hcCCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEE---cCChhHHHHHHHhcccC
Q 026087 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI---DIDPKKFDRVLNALAMS 242 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~---~~~~~~~~~~~~~Ga~~ 242 (243)
....+++|.+.+|.. +|+.|++.+.+++.+|+ +++++ ..+++|.+.++.+||+.
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~-~~~VvvP~~~s~~K~~~ira~GAeV 224 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGY-RLILTMPASMSMERRVLLKAFGAEL 224 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCCcHHHHHHHHHcCCEE
Confidence 445567886666664 59999999999999999 55555 24567899999999864
No 243
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=87.95 E-value=2.6 Score=36.11 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=41.2
Q ss_pred hhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 183 ~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+..+..+.+++||++||=+|+|- |.+++-+|+..|+ +|++++.+++-.+.+++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence 34467889999999999998754 4556677788899 99999999886655543
No 244
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.87 E-value=1.6 Score=40.38 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+++|+|+|+|..|+.++..++..|. +|+.++..
T Consensus 140 ~~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~ 175 (485)
T TIGR01317 140 KRTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE 175 (485)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence 3456899999999999999999999999 78888654
No 245
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.85 E-value=1.2 Score=36.02 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|+|+|+|.+|...++.+...|.++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34679999999999999999999999889999877
No 246
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.73 E-value=2.9 Score=36.07 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=43.1
Q ss_pred cceeEEcCCCCChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 157 ~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
....+++.+++.+- ......|.+. +... ...++|.+||=+|+|+ |.+++..+ .+|+.+|+++|.++--.+.+
T Consensus 129 ~~~~i~lDPGlAFG----TG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 129 DELNIELDPGLAFG----TGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred CceEEEEccccccC----CCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHHH
Confidence 35667776655332 2222333332 3322 2356888988888743 55555444 46887999999998765544
Q ss_pred H
Q 026087 236 L 236 (243)
Q Consensus 236 ~ 236 (243)
+
T Consensus 202 ~ 202 (300)
T COG2264 202 R 202 (300)
T ss_pred H
Confidence 3
No 247
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.62 E-value=1.3 Score=38.40 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
-.|++|.|+|.|.+|...++.++.+|+ +|++++++
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 368999999999999999999999999 99999875
No 248
>PRK07201 short chain dehydrogenase; Provisional
Probab=87.62 E-value=1.6 Score=41.56 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=34.2
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
++++||.|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL 411 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 678999987 9999999988888999 899999988776544
No 249
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.58 E-value=2.6 Score=36.22 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=38.3
Q ss_pred cccccchhhhhhhhcCC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 175 l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
++++....+. +++..+ --.|++++|+|.|. +|.-.+.++..+|+ +|+.+.+....
T Consensus 138 ~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~ 194 (286)
T PRK14175 138 VPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD 194 (286)
T ss_pred CCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh
Confidence 3444333333 233333 45789999999854 99999999999999 88888765443
No 250
>PRK05855 short chain dehydrogenase; Validated
Probab=87.57 E-value=1.7 Score=40.41 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+.++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT 355 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4578999987 9999998888889999 799999988776544
No 251
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=2.4 Score=34.62 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=38.3
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
+.....++++++||=+|+| .|..++-+++..+ +|+.+++.++-.+.+
T Consensus 64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A 110 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQA 110 (209)
T ss_pred HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHH
Confidence 4577889999999999875 4888888999887 899999988754444
No 252
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.46 E-value=1.5 Score=38.40 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
.|.+|.|+|.|.+|...+..++..|. +|++.+++++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 56789999999999999999999999 89999987654
No 253
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.45 E-value=1.5 Score=40.09 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHHhcc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRVLNALA 240 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-----~~~~~~~~Ga 240 (243)
.+++|+|+|.|..|.+++.+++..|+ +|.+.|.++. ..+.+++.|.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi 63 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGV 63 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCC
Confidence 36789999999999999999999999 8999987642 1234555554
No 254
>PRK07985 oxidoreductase; Provisional
Probab=87.36 E-value=1.9 Score=36.88 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=28.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.++++||+|+ +.+|...++.+...|+ +|+.+.++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~ 82 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP 82 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence 5678999988 9999999999999999 78877643
No 255
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.32 E-value=1.4 Score=36.82 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 447899999999999999999999998999887543
No 256
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.28 E-value=1.2 Score=38.83 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|.|+|-|.+|...++.++.+|+ +|++.++.
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~ 179 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK 179 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC
Confidence 57899999999999999999999999 89998764
No 257
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.16 E-value=1.3 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
-.|.+|+|.|.|.+|..+++.+..+|+ +|+++.
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVS 258 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMS 258 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 478999999999999999999999999 888753
No 258
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=87.04 E-value=2.1 Score=36.14 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
--+|.+|+|.|-|.+|..+++++..+|+ +|+++.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVs 68 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLS 68 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 3468899999999999999999999999 888664
No 259
>PRK08317 hypothetical protein; Provisional
Probab=87.03 E-value=2.1 Score=34.70 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=41.1
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~ 238 (243)
+.....++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34566788999999999876 788888888773 23899999999888777654
No 260
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.88 E-value=2 Score=39.00 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=30.5
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+++++||+|+ |.+|...++.+...|+ +|+++++.
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~ 243 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP 243 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789999988 9999999999999999 88888764
No 261
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.83 E-value=1.9 Score=40.22 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.-.|++|||.|+ |++|.-.+.-....+.++++.+++++.++...
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i 291 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI 291 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence 346899999987 89997655444445888999999999876544
No 262
>PRK11761 cysM cysteine synthase B; Provisional
Probab=86.77 E-value=3.3 Score=35.63 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
...+.+|++|+....|+.|.+.+..++.+|.+-++.+. .++.|.+.++.+||+.
T Consensus 57 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v 112 (296)
T PRK11761 57 RGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAEL 112 (296)
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 44456778877766799999999999999995444443 3457899999999864
No 263
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.67 E-value=1.4 Score=38.34 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|.|+|.|.+|...+..++.+|+ +|++.++.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 57899999999999999999999999 89998764
No 264
>PRK12831 putative oxidoreductase; Provisional
Probab=86.66 E-value=1.4 Score=40.40 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+..|+|+|+|+.|+.++..++..|. +|++++..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 4567899999999999999999999999 78888753
No 265
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.60 E-value=1.5 Score=38.66 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+|+|+|+|++|..++..+..+|..++..+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 346799999999999999999999998899898763
No 266
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=86.57 E-value=1.4 Score=38.23 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
..|.+|.|+|.|.+|...++.++..|+ +|+++++..+
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~ 170 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK 170 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 367899999999999999999999999 8999886543
No 267
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.49 E-value=2.3 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.-++.++||+|+ |.+|...+..+...|+ +|+.+++++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 345789999987 9999998888888999 888887664
No 268
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.46 E-value=2.3 Score=38.57 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
....+++|.|.|.+|...++.+...|. .+++++.++++.+.+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 346889999999999999999999999 899999999988877664
No 269
>PRK08223 hypothetical protein; Validated
Probab=86.39 E-value=1.4 Score=37.79 Aligned_cols=36 Identities=31% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+|+|+|+|++|..++..+..+|.+++..+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 457899999999999999999999999999887543
No 270
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.28 E-value=1.6 Score=35.67 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|+|+|+|++|...+..+..+|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 44679999999999999999999999889999876
No 271
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.27 E-value=1.7 Score=35.89 Aligned_cols=34 Identities=35% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+|+|+|+|++|...+..+..+|..+++.+|.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5789999999999999999999999899888644
No 272
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.23 E-value=1.9 Score=38.44 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|+|++|..++..+...|.++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 55689999999999999999999999999999876
No 273
>PRK00811 spermidine synthase; Provisional
Probab=86.23 E-value=1.9 Score=36.90 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.+.++||++|+|. |..+..+++..+.++|++++.+++-.+.+++.
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~ 119 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKY 119 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 3567999998765 55566777776777999999999988888763
No 274
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.16 E-value=1.2 Score=41.39 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
.+..+|+|+|+|..|++|+..+...|. +|++.+.++.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCC
Confidence 445679999999999999999999999 7888876553
No 275
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=86.09 E-value=3.7 Score=35.24 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=40.4
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
...+.++++|+....|+.|.+.+.+++.+|.+-++.+.. ++.|.+.++.+||+.
T Consensus 53 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v 108 (290)
T TIGR01138 53 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAEL 108 (290)
T ss_pred cCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEE
Confidence 344567777666566999999999999999944444433 346899999999864
No 276
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.01 E-value=0.44 Score=43.31 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.4
Q ss_pred hcCCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 188 ~~~~~~~g~~vl----V~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
...++++|+.+| |+|+ |.+|.+++|+++..|+ +|+++...++
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~ 73 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL 73 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence 456678888887 7765 9999999999999999 8888765554
No 277
>PLN02427 UDP-apiose/xylose synthase
Probab=85.95 E-value=2.1 Score=38.08 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHH
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~ 235 (243)
.+..+|||+|+ |.+|...++.+... |. +|++++++.++.+.+
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~-~V~~l~r~~~~~~~l 55 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH-KVLALDVYNDKIKHL 55 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC-EEEEEecCchhhhhh
Confidence 34467999987 99999988888877 47 899998776655443
No 278
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.87 E-value=2.8 Score=36.05 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=29.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
++.++||+|+ +.+|...+..+...|+ +|+..+++
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~ 45 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA 45 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 4678999987 8999998888888999 88888764
No 279
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=85.71 E-value=3.4 Score=34.22 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
-.+.+|+|.|-|.+|..++.++...|+ +|+++
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v 60 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAV 60 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 367899999999999999999999999 88854
No 280
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=85.65 E-value=1.6 Score=40.16 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+.+|+|+|+|..|+.++..++..|. +|++++..
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 3457899999999999999999999999 78888754
No 281
>PRK06128 oxidoreductase; Provisional
Probab=85.55 E-value=2.1 Score=36.63 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.++++||.|+ |.+|...+..+...|+ +|+.+.++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~ 88 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP 88 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4689999987 9999999998888999 78776554
No 282
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=85.54 E-value=3.3 Score=36.87 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
....++||.+.+|... |+.|.+.+.+|+.+|.+-++++. .+.+|.+.++.+||+.
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~V 160 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAEL 160 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 3455778876677655 99999999999999994444433 3467899999999874
No 283
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.47 E-value=1.8 Score=36.74 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|.|++|..++..+...|..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999998899998855
No 284
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.35 E-value=1.8 Score=38.10 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+|+|+|+|.+|..++..+...|..++..+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 347799999999999999999999999999998753
No 285
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.31 E-value=1.9 Score=39.03 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.|++|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~ 184 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED 184 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence 67899999999999999999999999 999998653
No 286
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=85.11 E-value=1.6 Score=41.48 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|||+|+|++|..++..+...|.++++.+|.+
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 46789999999999999999999999999999743
No 287
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.06 E-value=1.4 Score=39.46 Aligned_cols=33 Identities=39% Similarity=0.566 Sum_probs=28.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|..|++++..+...|. +|.+++..+
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence 458999999999999988889999 888887654
No 288
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.04 E-value=3.7 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.+...+|+|+|+|..|...+..+. ..+.++|.++++++++.+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 356789999999999999876444 467779999999988765543
No 289
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=84.94 E-value=2.6 Score=36.96 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHHHHhcc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID-PKKFDRVLNALA 240 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~-~~~~~~~~~~Ga 240 (243)
-.+++|.|+|.|.+|.+.++-++..|. +|++..+. ++..+.+++.|+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~ 62 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADGF 62 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHHHCCC
Confidence 456889999999999999999999999 77765554 344555556665
No 290
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.85 E-value=2 Score=38.10 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+|+|+|+|++|..++..+..+|.+++..+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 347899999999999999999999999999998654
No 291
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.82 E-value=3.8 Score=35.14 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 192 VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 192 ~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
.-.|++++|+|.|. +|...+.++...|+ +|..+.+..+.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~ 195 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN 195 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence 45788999999976 99999999999999 89888764433
No 292
>PRK08618 ornithine cyclodeaminase; Validated
Probab=84.82 E-value=3.6 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHH-HHHcCCCEEEEEcCChhHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~-a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
.+..++++|+|+|..+...+.. +...++++|.++++++++.+.+.
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~ 169 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA 169 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 3466789999999999877654 45678889999999988765443
No 293
>PLN02565 cysteine synthase
Probab=84.70 E-value=3.8 Score=35.73 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=40.6
Q ss_pred hcCCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHHhcccC
Q 026087 188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRVLNALAMS 242 (243)
Q Consensus 188 ~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~---~~~~~~~~~~~~Ga~~ 242 (243)
....+.+|.+.+|. ..|+.|.+.+..++.+|+ +++++. .++.|++.++.+||..
T Consensus 59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~k~~~i~~~GA~V 116 (322)
T PLN02565 59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGY-KLIITMPASMSLERRIILLAFGAEL 116 (322)
T ss_pred HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCC-eEEEEeCCCCcHHHHHHHHHcCCEE
Confidence 33445788666665 459999999999999999 555443 3457899999999863
No 294
>PLN02256 arogenate dehydrogenase
Probab=84.59 E-value=3.6 Score=35.62 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=37.4
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
....-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.+.++|+
T Consensus 29 ~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv 79 (304)
T PLN02256 29 EELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV 79 (304)
T ss_pred HhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence 33333455789999999999988888888887 8999987764 355555554
No 295
>PRK06153 hypothetical protein; Provisional
Probab=84.46 E-value=1.6 Score=39.07 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|+|++|...+..+..+|.++++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999999998754
No 296
>PRK10717 cysteine synthase A; Provisional
Probab=84.36 E-value=4.7 Score=35.19 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=40.0
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
....++|++|+....|+.|++.+..|+.+|.+-++.+. .++.|++.++.+||+.
T Consensus 58 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V 113 (330)
T PRK10717 58 RGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAEL 113 (330)
T ss_pred cCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Confidence 34456777776666799999999999999985444443 2345889999999864
No 297
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=84.35 E-value=3.1 Score=33.94 Aligned_cols=50 Identities=28% Similarity=0.481 Sum_probs=34.8
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~ 236 (243)
+.....+++|++||-+|+|. |+.++.+++..|. .+|+.++..++-.+.++
T Consensus 64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 45667799999999998743 6777777777664 26999999887655554
No 298
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=84.23 E-value=2.9 Score=33.54 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=33.6
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
......++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~ 70 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLER 70 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHH
Confidence 334455678899998754 5566667764 77 99999999876665543
No 299
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.22 E-value=2.1 Score=37.58 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
-.+.+|||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 467899999999999999999999998789998877544
No 300
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=84.11 E-value=1.7 Score=36.34 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
+...|+|+|.|++|.+++..+...|++++..+|-++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 346799999999999999999999999988887543
No 301
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.87 E-value=2.4 Score=37.99 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
--.|.+|.|+|.|.+|...++.++.+|+ +|++.+..
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~ 148 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPP 148 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCc
Confidence 3468999999999999999999999999 89998753
No 302
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.85 E-value=4.6 Score=34.92 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
-....+++|+|+|..|.+.+..+. ..+.++|.+++++.+|.+.+
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 356679999999999999888876 47888999999998876544
No 303
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=83.84 E-value=2.2 Score=38.00 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45689999999999999999999999899999865
No 304
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.84 E-value=4.9 Score=32.71 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=37.2
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (243)
+.....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus 68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 44556788999999998753 5556667776653 389999999987766654
No 305
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=83.62 E-value=2.8 Score=37.57 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 190 ~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
..-..+.+|||+|+ |.+|...+..+...|. +|++++++..+
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~ 96 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG 96 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence 33456778999987 9999999999988999 89999887643
No 306
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=83.45 E-value=4.3 Score=35.46 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
+...+++|+|+|..+.+.+..+. ..+.++|.+++++.+|.+.+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~ 170 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL 170 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence 45678999999999988777776 57888999999998876544
No 307
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=83.37 E-value=2.6 Score=37.74 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
-.|.+|.|+|.|.+|...++.++.+|. +|++.+.
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 478999999999999999999999999 8999874
No 308
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.37 E-value=4.6 Score=35.33 Aligned_cols=44 Identities=23% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (243)
+...+++|+|+|..+.+.+..+. ..+.++|.+++++.++.+.+.
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~ 174 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYA 174 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 45578999999999998777666 467779999999988876553
No 309
>PLN02366 spermidine synthase
Probab=83.24 E-value=3.2 Score=36.07 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.+.++|||+|+|. |.++..+++.-+..+|.+++.+++-.+.+++.
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 4568999998866 55667778876767899999999888877763
No 310
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=83.12 E-value=4.5 Score=34.67 Aligned_cols=48 Identities=23% Similarity=0.073 Sum_probs=36.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.+.|+..++|..|.+.+.+++..|.+-++.+.. +++|++.++.+|++.
T Consensus 65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~v 114 (304)
T cd01562 65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEV 114 (304)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 455666677999999999999999954444432 345888999999863
No 311
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.07 E-value=2.1 Score=36.02 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=27.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|+.|++++..+...|. +|+.++...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 358889999999998888888999 888887553
No 312
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.04 E-value=2.1 Score=43.00 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
..|++|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence 358999999999999999999999999 888887543
No 313
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=83.02 E-value=2.9 Score=37.68 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=37.4
Q ss_pred chhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCC
Q 026087 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (243)
Q Consensus 180 ~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~--~vi~~~~~ 228 (243)
...++++......-...+|++.|+|.-|.+++.+.+++|.+ +++++|+.
T Consensus 184 A~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 184 AALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 34455554444445566788889999999999999999986 89999854
No 314
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=82.85 E-value=2.1 Score=41.24 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.++..+|+|+|+|..|++++..++..|+ +|.++++.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 4666789999999999999999999999 899988754
No 315
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=82.79 E-value=2.6 Score=37.42 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence 35689999987 9999999999999998 89988764
No 316
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=82.61 E-value=2.6 Score=37.02 Aligned_cols=37 Identities=35% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+.+|+|+|+|..|+.++..++..|. +|+.++..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 51 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP 51 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 4567899999999999999999999998 788887653
No 317
>PLN02306 hydroxypyruvate reductase
Probab=82.56 E-value=2.6 Score=37.82 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~ 229 (243)
.|++|.|+|.|.+|...++.++ .+|+ +|++.++..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 5789999999999999999975 9999 999998654
No 318
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.56 E-value=3.9 Score=35.46 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
.++-..++|.|. .++|++.+..++..|+ .|..+.++.+|+..+++
T Consensus 30 ~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~ 75 (331)
T KOG1210|consen 30 PKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA 75 (331)
T ss_pred cCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence 455578889876 8999999999999999 89999999999877654
No 319
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=82.50 E-value=2.2 Score=35.85 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|+.|++++..+...|. +|+.+++..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 348888999999999999999998 888887654
No 320
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=82.17 E-value=1.7 Score=31.72 Aligned_cols=36 Identities=11% Similarity=0.351 Sum_probs=29.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
++|||.|.|.++.-+++-++.+|. +++++.+++++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~ 38 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV 38 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence 579999999999999999999999 777776666653
No 321
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.15 E-value=2.8 Score=33.82 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|+|+|+|++|.-.+..+..+|.+++..+|.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34789999999999999999999999899998754
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.11 E-value=4.5 Score=36.96 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...|++|+|+|+|.+|+-++..+..+|+ +|..+.+.
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~ 304 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRR 304 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeec
Confidence 3568999999999999999999999999 67777654
No 323
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=2.8 Score=36.37 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
-.+.-|+|+|+|.+|..++.++...|++++-.+|-++-.+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSl 111 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSL 111 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccH
Confidence 3467788889999999999999999999998887655443
No 324
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.02 E-value=3.3 Score=38.72 Aligned_cols=34 Identities=41% Similarity=0.597 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|.|+|.|.+|...+..++.+|+ +|+++++.
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 57899999999999999999999999 99999874
No 325
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=81.99 E-value=2.7 Score=38.41 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+.+|+|+|+|..|+.++..++..|. +|+.++..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 456899999999999999999999999 78888754
No 326
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=81.99 E-value=7.2 Score=33.42 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=39.2
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.....+|++|+-..+|+.|.+.+..++..|.+-++.+.. ++.|++.++.+||+.
T Consensus 51 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v 106 (298)
T TIGR01139 51 RGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAEL 106 (298)
T ss_pred cCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEE
Confidence 344567777654456999999999999999944444432 355888999999864
No 327
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=81.90 E-value=11 Score=32.93 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
-..+.|+|.++ +-+++..+..++ ..+..++|+++ ++...++.+++|.
T Consensus 134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~ 182 (314)
T PF11017_consen 134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGC 182 (314)
T ss_pred CCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCC
Confidence 34467777777 778877777777 55555899985 4555567777763
No 328
>PRK12831 putative oxidoreductase; Provisional
Probab=81.86 E-value=4.3 Score=37.26 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+++|+|+|+|.+|.-++..+..+|+ +|..+.+.
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~ 313 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRR 313 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeec
Confidence 4678999999999999999999999999 57777653
No 329
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=81.86 E-value=4.1 Score=34.14 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
-.|.+++|.|.|.+|..+++.+..+|+ +++++
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~v 61 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAV 61 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence 467999999999999999999999999 88887
No 330
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=81.83 E-value=5.9 Score=36.10 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=40.5
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~---~~~~~~~~~~~Ga~~ 242 (243)
...+.+|++|+-...|+.|.+.+..++.+|. +++++.. +++|.+.++.+||+.
T Consensus 56 ~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~-~~~iv~p~~~~~~k~~~~~~~GA~v 111 (454)
T TIGR01137 56 SGRLKPGDTIIEPTSGNTGIGLALVAAIKGY-KCIIVLPEKMSNEKVDVLKALGAEI 111 (454)
T ss_pred cCCCCCCCEEEEeCCcHHHHHHHHHHHHcCC-eEEEEeCCCcCHHHHHHHHHCCCEE
Confidence 3445677777666679999999999999999 4444432 457899999999874
No 331
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.73 E-value=3.6 Score=38.44 Aligned_cols=34 Identities=41% Similarity=0.580 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|.|+|.|.+|...+..++.+|+ +|+++++.
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 170 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY 170 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 57899999999999999999999999 99999864
No 332
>PLN02477 glutamate dehydrogenase
Probab=81.65 E-value=3.1 Score=37.58 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
-.|.+|+|.|-|.+|..+++++...|+ +|+++
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaV 235 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAV 235 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence 468899999999999999999999999 88855
No 333
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.64 E-value=3.1 Score=33.55 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+|+|+|+|++|.-.+..+...|.++++.+|.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4789999999999999999999999889988754
No 334
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=81.63 E-value=4.2 Score=29.13 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCC----cCCCCCEEeee
Q 026087 72 AGIVESVGEGVT----EVQPGDHVIPC 94 (243)
Q Consensus 72 vG~V~~~G~~~~----~~~~Gd~V~~~ 94 (243)
.|+|+++|++.. .+++||+|+..
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 499999999854 39999999854
No 335
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=81.59 E-value=2.7 Score=42.38 Aligned_cols=35 Identities=34% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+++|+|+|+|+.|+.++..++.+|. +|++++..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecc
Confidence 457899999999999999999999999 88888754
No 336
>PLN00011 cysteine synthase
Probab=81.39 E-value=6.8 Score=34.12 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=39.6
Q ss_pred hcCCCCCC-CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 188 NTAKVEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 188 ~~~~~~~g-~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
....+.+| ++|+....|+.|++.+.+++.+|.+-.+++.. ++.|++.++.+||+.
T Consensus 61 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V 118 (323)
T PLN00011 61 DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEV 118 (323)
T ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Confidence 44556777 55554455999999999999999944444432 346889999999864
No 337
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=81.25 E-value=3.9 Score=30.83 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=27.2
Q ss_pred hhcCCCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEc
Q 026087 187 WNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
....+.++||.++++.. .+.=+-+++.||.+|+ +||++.
T Consensus 96 ~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 96 LALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 34456899999999843 4666779999999999 888874
No 338
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=81.22 E-value=8.4 Score=33.07 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=40.0
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.....+|++|+-...|+.|.+.+..|+.+|.+-++.+.. ++.|++.++.+||+.
T Consensus 52 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v 107 (299)
T TIGR01136 52 RGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAEL 107 (299)
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEE
Confidence 344567777655566999999999999999954444433 356889999999863
No 339
>PRK09414 glutamate dehydrogenase; Provisional
Probab=81.10 E-value=7.4 Score=35.60 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
-.|.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav 261 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC 261 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 468999999999999999999999999 88888
No 340
>PRK07411 hypothetical protein; Validated
Probab=81.02 E-value=3 Score=37.43 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..+|+|+|+|++|..+++.+..+|.++++.+|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999999998754
No 341
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=80.99 E-value=3 Score=37.47 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|||+|+|++|..++..+..+|.+++..+|.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 34689999999999999999999999999988754
No 342
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=80.97 E-value=6.8 Score=31.63 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=35.9
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~ 236 (243)
+.....++++++||=+|+|. |..++.+++..+ ..+|++++.+++-.+.++
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 34556678999999998754 666667777654 238999999988666554
No 343
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=80.77 E-value=2.4 Score=39.71 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=28.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|+.|++++..+...|. +|++++..+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 359999999999999988888999 788887654
No 344
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.74 E-value=4 Score=35.81 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
-..|++|.|+|.|.+|...++-++..|+ .+....+.+.+.+...+.++
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHhcc
Confidence 3467999999999999999999999995 78888777777777766655
No 345
>PLN02206 UDP-glucuronate decarboxylase
Probab=80.71 E-value=3.4 Score=37.71 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
.++.+|||+|+ |.+|...+..+...|. +|+++++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 35688999987 9999999999999999 8988864
No 346
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=80.59 E-value=6.4 Score=34.22 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.++++|+..+.|..|.+.+.+++.+|.+-++++.. ++.|.+.++.+||+.
T Consensus 49 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v 100 (316)
T cd06448 49 NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATV 100 (316)
T ss_pred ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 34667666677999999999999999954444432 456889999999863
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=80.45 E-value=3.2 Score=37.89 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
..+.+|+|+|+|..|+.++..+...|. +|+.++..+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 556889999999999999999999998 888887553
No 348
>PLN02735 carbamoyl-phosphate synthase
Probab=80.42 E-value=3.1 Score=42.49 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=37.8
Q ss_pred cccchhhhhhhhcCCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEcCChh
Q 026087 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 177 ~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~-----------G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
.+...||++......-+.=++|||+|+|.+ |..++..++.+|+ +|+.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~ 68 (1102)
T PLN02735 5 DTVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA 68 (1102)
T ss_pred ccceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence 344556775533333334469999999874 5668999999999 8999988763
No 349
>PLN02356 phosphateglycerate kinase
Probab=80.33 E-value=7.2 Score=35.46 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
...+++.+|+...+|+.|.+.+.+++.+|++-++++. .+++|.+.++.+||+.
T Consensus 99 g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeV 153 (423)
T PLN02356 99 GQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATV 153 (423)
T ss_pred CccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEE
Confidence 3344666554456799999999999999995444443 3457899999999874
No 350
>PRK08198 threonine dehydratase; Provisional
Probab=80.31 E-value=6.5 Score=35.36 Aligned_cols=49 Identities=18% Similarity=0.006 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.++.|+..++|..|.+.+..|+.+|.+-++++.. +..|.+.++.+||+.
T Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V 119 (404)
T PRK08198 69 RARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEV 119 (404)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEE
Confidence 3556666677999999999999999955555543 346888899999864
No 351
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=80.24 E-value=3.2 Score=32.90 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
-++++|+|+|+|..+.-++..+...|. +|..+.+++.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~~~ 202 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSPIW 202 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS---
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCCCC
Confidence 467999999999988877777777775 89988887643
No 352
>PRK07048 serine/threonine dehydratase; Validated
Probab=80.16 E-value=6.5 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=35.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
+.|+..+.|+.|.+.+..++.+|++-++++. .++.|.+.++.+||+.
T Consensus 73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV 121 (321)
T PRK07048 73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEV 121 (321)
T ss_pred CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence 3455557799999999999999995444443 2345888889999863
No 353
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=79.93 E-value=1.4 Score=38.02 Aligned_cols=51 Identities=31% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+...++..+++.|.|..|+.++..++..|+ .|...+....+.+..+++|+.
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~ 209 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAK 209 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccc
Confidence 345567889999999999999999999999 899998888888888888875
No 354
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=79.77 E-value=3.2 Score=41.81 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|+|+-|+.|+..++.+|. +|++++..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 46789999999999999999999999 88888754
No 355
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.59 E-value=4.8 Score=39.19 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=34.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+|.|+|+|.+|...++++...|+ +|+..+.+++.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLG 352 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 579999999999998888888899 999999999876543
No 356
>PLN02970 serine racemase
Probab=79.52 E-value=7.3 Score=34.01 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=35.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
+.|+...+|..|.+.+..++.+|.+-++.+. .+++|.+.++.+||+.
T Consensus 76 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~V 124 (328)
T PLN02970 76 KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGII 124 (328)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence 3455556799999999999999995444443 3466888899999864
No 357
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=79.50 E-value=3.9 Score=41.05 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..|++|+|+|+|+-|+.++..+..+|. +|++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence 468899999999999999999999999 89999864
No 358
>PRK08605 D-lactate dehydrogenase; Validated
Probab=79.34 E-value=4 Score=35.77 Aligned_cols=36 Identities=42% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHH-HHcCCCEEEEEcCChh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPK 230 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a-~~~G~~~vi~~~~~~~ 230 (243)
.|.+|.|+|.|.+|...++.+ +..|. +|++.+++.+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~ 181 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPN 181 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCcc
Confidence 578999999999999888887 67898 8999987654
No 359
>PLN02572 UDP-sulfoquinovose synthase
Probab=79.29 E-value=3.7 Score=37.46 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
..++.+|||+|+ |.+|...+..+...|+ +|+++++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 345678999987 9999999999999999 8888763
No 360
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.28 E-value=3.5 Score=38.16 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA 219 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~ 219 (243)
+.++++|+|+|.|..|++++.+++..|+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~ 36 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA 36 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC
Confidence 5578999999999999999999999998
No 361
>PTZ00188 adrenodoxin reductase; Provisional
Probab=79.06 E-value=4.8 Score=37.37 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCHHHHHHHH-HHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~-~a~~~G~~~vi~~~~~~ 229 (243)
....+|+|+|+|+.|+.++. +++..|. +|..++..+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p 73 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLP 73 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 34578999999999999877 6777788 788877554
No 362
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=79.00 E-value=7.3 Score=35.58 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+++|+|+|+|.+|.-++..+...|+++|..+.+.
T Consensus 270 ~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 270 LPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3478999999999999998888888998677777653
No 363
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=78.96 E-value=4.2 Score=39.11 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKK 231 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~ 231 (243)
.+++.+|||+|+ |.+|...++.+... |. +|+++++.+..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~ 352 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA 352 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence 567889999987 99999999888765 68 89999876643
No 364
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=78.92 E-value=4.3 Score=38.45 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
....+|+|+|+|.+|.+.++.|+.+|+ +|++++.+++
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~-~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGI-KVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 456789999999999999999999999 8998887653
No 365
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=78.86 E-value=4.5 Score=36.86 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
++..+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45578999987 9999999999999999 89998764
No 366
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.77 E-value=4.7 Score=36.35 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=35.8
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
-.....|+|.|+ |.+|+..++.++..|+ .|.++.++.++...+
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf-~vra~VRd~~~a~~~ 119 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGF-SVRALVRDEQKAEDL 119 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCC-eeeeeccChhhhhhh
Confidence 445578999998 9999999999999999 899988888765433
No 367
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=78.72 E-value=3.3 Score=37.86 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=28.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|+.|++++..+...|. +|..++...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 468999999999999988889999 899998654
No 368
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=78.59 E-value=4 Score=39.89 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 57799999999999999999999999 88888753
No 369
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=78.49 E-value=4.9 Score=28.43 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEEeCCCCC---------cCCCCCEEeeec
Q 026087 72 AGIVESVGEGVT---------EVQPGDHVIPCY 95 (243)
Q Consensus 72 vG~V~~~G~~~~---------~~~~Gd~V~~~~ 95 (243)
.|+|+++|++.. .+++||+|+...
T Consensus 37 ~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 37 EGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred eEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 699999999643 499999998543
No 370
>PRK06110 hypothetical protein; Provisional
Probab=78.27 E-value=7 Score=34.00 Aligned_cols=45 Identities=20% Similarity=0.086 Sum_probs=34.1
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 198 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.+|... |..|.+.+..++.+|.+-++++.. ++.|.+.++.+||+.
T Consensus 72 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V 119 (322)
T PRK06110 72 GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAEL 119 (322)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Confidence 355554 999999999999999954555542 356888899999874
No 371
>PRK08638 threonine dehydratase; Validated
Probab=78.07 E-value=8.5 Score=33.74 Aligned_cols=47 Identities=15% Similarity=-0.003 Sum_probs=35.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
+.|+..++|..|.+.+..++.+|.+-++.+.. ++.|.+.++.+||+.
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V 124 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEV 124 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEE
Confidence 34555567999999999999999954554432 346888999999863
No 372
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=78.02 E-value=4.6 Score=35.28 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~ 228 (243)
.|+++.|+|.|.+|...++.++ .+|+ +|++.++.
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~ 178 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARR 178 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCC
Confidence 6789999999999999999998 8999 89888765
No 373
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=77.98 E-value=6 Score=27.86 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCC---------CcCCCCCEEeeec
Q 026087 71 AAGIVESVGEGV---------TEVQPGDHVIPCY 95 (243)
Q Consensus 71 ~vG~V~~~G~~~---------~~~~~Gd~V~~~~ 95 (243)
..|+|+++|++. ..+++||+|+...
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 469999999973 2599999998543
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=77.55 E-value=4.8 Score=37.33 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH--cCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~--~G~~~vi~~~~~~ 229 (243)
..+.+|+|+|+|+-|+.++..+.. .|+ +|.+++..+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 345789999999999999988765 788 888887655
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.54 E-value=6 Score=38.50 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=33.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+|.|+|+|.+|...++.+...|. +|+..+.+++.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLG 352 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 479999999999998888888899 899999998876554
No 376
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=77.52 E-value=7.2 Score=27.38 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCC----cCCCCCEEeeec
Q 026087 72 AGIVESVGEGVT----EVQPGDHVIPCY 95 (243)
Q Consensus 72 vG~V~~~G~~~~----~~~~Gd~V~~~~ 95 (243)
.|+|+++|++.. .+++||+|+...
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEcc
Confidence 599999997643 499999998543
No 377
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=77.29 E-value=6 Score=38.65 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=33.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+|.|+|+|.+|...++++...|+ +|+..+.+++.++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 374 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRG 374 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHH
Confidence 579999999999998888888899 899999999876554
No 378
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=77.16 E-value=13 Score=31.73 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.+++++|+....|+.|.+.+.+++.+|.+-++.+.. ++.|++.++.+||+.
T Consensus 50 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v 102 (291)
T cd01561 50 LKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEV 102 (291)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEE
Confidence 445666655455999999999999999944444433 356889999999864
No 379
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=77.15 E-value=6.9 Score=33.88 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
+-+|++|.|+|-|+-|++..+-+|-.|.+.+|++.......+.+++-|+.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~ 64 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK 64 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE
Confidence 55788999999999999999999999997666765555557888887765
No 380
>PRK04457 spermidine synthase; Provisional
Probab=77.13 E-value=9.4 Score=32.24 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
.++++||++|.|+ |.++..+++.....++++++.+++-++.+++.
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence 4567899999864 66777777776544899999999998888764
No 381
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=77.10 E-value=3.7 Score=38.16 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.-.|+|+|+|..|+.|+..|...|+ +|++++..+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 3458999999999999988888999 888887543
No 382
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=76.93 E-value=10 Score=30.71 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=35.3
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~ 236 (243)
+.....++++++||=+|+|. |..++.+++..+. .+|++++.+++-.+.++
T Consensus 69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~ 119 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119 (215)
T ss_pred HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 44556688999999998743 4455566666542 36999999988776654
No 383
>PRK06608 threonine dehydratase; Provisional
Probab=76.83 E-value=8.6 Score=33.79 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=34.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
+|+-...|..|.+.+..++.+|.+-++.+.. ++.|++.++.+||+.
T Consensus 74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V 121 (338)
T PRK06608 74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEV 121 (338)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEE
Confidence 4443345999999999999999955555543 456899999999864
No 384
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=76.74 E-value=8 Score=31.39 Aligned_cols=48 Identities=29% Similarity=0.319 Sum_probs=36.9
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHHh
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G--~~~vi~~~~~~~~~~~~~~~ 238 (243)
....+++.+||-+|+|. |..+..+++..+ . ++++++.+++.++.+++.
T Consensus 46 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~ 95 (239)
T PRK00216 46 WLGVRPGDKVLDLACGT-GDLAIALAKAVGKTG-EVVGLDFSEGMLAVGREK 95 (239)
T ss_pred HhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHh
Confidence 34456788999999877 777778888775 5 899999998877776653
No 385
>PRK07121 hypothetical protein; Validated
Probab=76.63 E-value=4.2 Score=37.49 Aligned_cols=33 Identities=39% Similarity=0.522 Sum_probs=27.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|||+|+|..|+.|+.-|...|+ +|++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~ 53 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA 53 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 348899999999998888888999 888887543
No 386
>PLN02463 lycopene beta cyclase
Probab=76.60 E-value=4.5 Score=37.04 Aligned_cols=32 Identities=44% Similarity=0.547 Sum_probs=27.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.|+|+|+|+.|++++..+...|. +|..++..+
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 58999999999998877777899 899998754
No 387
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.57 E-value=14 Score=31.72 Aligned_cols=56 Identities=21% Similarity=0.156 Sum_probs=38.7
Q ss_pred cccccchhhhhhhhcCCC-CCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 175 LGCGVPTGLGAVWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 175 l~~~~~ta~~~~~~~~~~-~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
++++....+. +++..++ -.|++|+|+|.| .+|.-.+.++...|+ +|..+.+..+.+
T Consensus 137 ~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t~~l 194 (285)
T PRK14191 137 VPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILTKDL 194 (285)
T ss_pred CCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCcHHH
Confidence 3444433333 3444443 469999999985 999999999999999 788876544433
No 388
>PLN02712 arogenate dehydrogenase
Probab=76.44 E-value=7.5 Score=37.53 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
.+.+|.|+|.|.+|...+..++..|. +|++++++++. +.+.++|+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~~-~~a~~~Gv 412 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDYS-DEAQKLGV 412 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChHH-HHHHHcCC
Confidence 45789999999999998888888898 89999887553 45556664
No 389
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=76.43 E-value=9.1 Score=30.60 Aligned_cols=44 Identities=25% Similarity=0.162 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~ 237 (243)
++++.+||-+|+|. |..++.+++.. ++ +|+++|.+++.++.+++
T Consensus 43 l~~g~~VLDiGcGt-G~~al~la~~~~~~-~V~giD~s~~~l~~A~~ 87 (187)
T PRK00107 43 LPGGERVLDVGSGA-GFPGIPLAIARPEL-KVTLVDSLGKKIAFLRE 87 (187)
T ss_pred cCCCCeEEEEcCCC-CHHHHHHHHHCCCC-eEEEEeCcHHHHHHHHH
Confidence 44588999888742 34444555444 45 99999999987766543
No 390
>PRK08246 threonine dehydratase; Provisional
Probab=76.35 E-value=12 Score=32.35 Aligned_cols=49 Identities=31% Similarity=0.289 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
++++|+...+|..|.+.+..++..|.+-++.+. .++.|.+.++.+|++.
T Consensus 67 ~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V 117 (310)
T PRK08246 67 PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEV 117 (310)
T ss_pred cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEE
Confidence 556665555699999999999999995444443 2445888999999863
No 391
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=76.20 E-value=10 Score=28.78 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=30.1
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCChhHH
Q 026087 197 IVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKF 232 (243)
Q Consensus 197 ~vlV~G~-g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~ 232 (243)
+|.|+|+ |.+|...+..+...+. ++++.+|.++++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~ 39 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA 39 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence 5789999 9999998888888884 5799999987654
No 392
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=76.09 E-value=13 Score=29.32 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
....+.++++||=+|+|. |..++.+++.....+|++++.+++.++.+++
T Consensus 25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 73 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKE 73 (187)
T ss_pred HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 445567888888888754 5555666665533389999999987766643
No 393
>PHA01634 hypothetical protein
Probab=75.95 E-value=8.9 Score=28.92 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 194 PGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 194 ~g~~vlV~G~--g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
.+++|+++|+ |...+. ...+|+++|+++..+++..+..++
T Consensus 28 k~KtV~dIGA~iGdSaiY----F~l~GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALY----FLLRGASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhH----HhhcCccEEEEeccCHHHHHHHHH
Confidence 5789999987 555443 345788899999988877666654
No 394
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=75.70 E-value=9.8 Score=31.42 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
+++.|+..+.|..|.+.+.+++..|.+-++.+.. ++.+.+.++.+|++.
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v 99 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEV 99 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence 4555555456999999999999999944444432 445788888888863
No 395
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=75.62 E-value=4.8 Score=33.18 Aligned_cols=31 Identities=35% Similarity=0.399 Sum_probs=22.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|+|.|+|+.|+.++..+...|. +|..++++
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~ 49 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGL-KVAVIERK 49 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS--EEEEESS
T ss_pred CEEEECCChhHHHHHHHHHHCCC-eEEEEecC
Confidence 37778999999998888887899 88888754
No 396
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=75.50 E-value=8.9 Score=33.62 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
.+++++|+|+|.+|+-++..+...|+++|..+.+
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~ 204 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYR 204 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEee
Confidence 3789999999999998888777789855777754
No 397
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=75.42 E-value=4.6 Score=34.54 Aligned_cols=54 Identities=26% Similarity=0.200 Sum_probs=40.5
Q ss_pred hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhccc
Q 026087 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAM 241 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~ 241 (243)
.....+.+|.+ ++-|. |..|+..+.+++++|++-.|..- .+.+|.+.++.|||.
T Consensus 92 ee~GkL~~gg~-v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~ 148 (391)
T KOG1481|consen 92 EEKGKLVRGGT-VVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAE 148 (391)
T ss_pred HHcCCcccCce-EEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcce
Confidence 45667778844 44575 99999999999999996555553 334688999999985
No 398
>PRK01581 speE spermidine synthase; Validated
Probab=75.29 E-value=10 Score=33.83 Aligned_cols=45 Identities=29% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
....++|||+|+| .|..+..+++.-+.++|++++.+++-++.+++
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 3445799999875 45566777776666699999999998888885
No 399
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=75.26 E-value=3.8 Score=39.27 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|+.|++++..+.. .|. +|.+++..+
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~ 66 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKP 66 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCC
Confidence 369999999999998777777 498 788887554
No 400
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=74.99 E-value=13 Score=33.53 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=35.0
Q ss_pred EEEE-cCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 198 VAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
-+|. .+|+.|+..+..++.+|++-+|++. .++.|.+.++.+||+.
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeV 183 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTV 183 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEE
Confidence 4555 4599999999999999995555552 4557999999999864
No 401
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=74.80 E-value=7 Score=30.92 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=29.4
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
...+++|++||.+|+|+-++......+..+..+|++++.++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 455789999999998776654444444434348999988774
No 402
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=74.49 E-value=9.9 Score=30.39 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=31.0
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
+.......++.+||-+|+|. |..+..+++ .|. +|+++|.+++-++.++
T Consensus 22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVL 69 (195)
T ss_pred HHHHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHH
Confidence 33344445567888887632 444445554 477 8999999987666554
No 403
>PLN02576 protoporphyrinogen oxidase
Probab=74.45 E-value=5.1 Score=36.83 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=27.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~ 229 (243)
..|+|+|+|..|+.++..++.. |. +|.+++.++
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~ 46 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARD 46 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCC
Confidence 3588999999999999888888 88 788887654
No 404
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=74.44 E-value=5.5 Score=40.36 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.+.+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 46789999999999999999999999 78888754
No 405
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=74.36 E-value=6.7 Score=35.98 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-+.+.+|+|+|||..|++|++=+...|+..+.++..++
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 34455899999999999999888888887777776544
No 406
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=74.25 E-value=14 Score=32.88 Aligned_cols=46 Identities=26% Similarity=0.141 Sum_probs=34.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
.|+...+|..|.+.+..|+.+|.+-++++. ....|.+.++.+||+.
T Consensus 50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V 97 (380)
T TIGR01127 50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEV 97 (380)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEE
Confidence 454456799999999999999995444442 2346889999999863
No 407
>PLN02823 spermine synthase
Probab=74.06 E-value=9.9 Score=33.45 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
..++|||+|+|. |..+..+++..+.++|++++.+++-.+.+++.
T Consensus 103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~ 146 (336)
T PLN02823 103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKH 146 (336)
T ss_pred CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 447899998753 44456677766667999999999998888764
No 408
>PRK06381 threonine synthase; Validated
Probab=73.99 E-value=8.2 Score=33.43 Aligned_cols=48 Identities=23% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
|.+.+|.+. |+.|.+.+..++.+|.+-++.+.. ++.|++.++.+||+.
T Consensus 62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V 112 (319)
T PRK06381 62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEI 112 (319)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEE
Confidence 334555554 999999999999999954444432 356889999999864
No 409
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=73.95 E-value=3.9 Score=30.97 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCC
Q 026087 198 VAVFGLGTVGLAVAEGAKAAGA 219 (243)
Q Consensus 198 vlV~G~g~~G~~a~~~a~~~G~ 219 (243)
++|+|+|.++...+++++.+|+
T Consensus 1 L~I~GaG~va~al~~la~~lg~ 22 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF 22 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE
T ss_pred CEEEeCcHHHHHHHHHHHhCCC
Confidence 4678999999999999999999
No 410
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=73.94 E-value=13 Score=31.39 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=38.0
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.....++++.+||=+|+|. |..+..+++..++ +|++++.+++-++.+++
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~ 93 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKL 93 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHH
Confidence 44566788999999888753 4455666776788 89999999887777665
No 411
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=73.94 E-value=9 Score=31.64 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
.+.+|||+|+|.++.-=+..+...|+ +|.+++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcC
Confidence 56789999999999988888888999 7877753
No 412
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=73.85 E-value=5.1 Score=31.48 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
....++.+||=+|+| +|+..+.+++..+..+|+.+|.++ -++.++
T Consensus 41 ~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~ 85 (173)
T PF10294_consen 41 PELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLR 85 (173)
T ss_dssp GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHH
T ss_pred hhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch-hhHHHH
Confidence 346678888888986 566666666665666999999877 555543
No 413
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=73.77 E-value=6.4 Score=35.16 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
+.++++|+|+|+|.+|+-.+..++..|. +|..++..+
T Consensus 141 ~~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~ 177 (396)
T PRK09754 141 LQPERSVVIVGAGTIGLELAASATQRRC-KVTVIELAA 177 (396)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4567899999999999998888889999 787776543
No 414
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=73.75 E-value=6.9 Score=34.68 Aligned_cols=40 Identities=38% Similarity=0.527 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
+-+|++++|.|=|-+|.-.++-++.+|+ +|++++.++-+.
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA-~ViVtEvDPI~A 245 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGA-RVIVTEVDPIRA 245 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCC-eEEEEecCchHH
Confidence 5689999999989999999999999999 899999887553
No 415
>PLN02985 squalene monooxygenase
Probab=73.75 E-value=5.7 Score=37.03 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=27.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|..|++++..+...|. +|..+++..
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 468999999999998877778898 899998763
No 416
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=73.53 E-value=10 Score=32.00 Aligned_cols=44 Identities=25% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+..++||++|+|. |..+..+++.....++++++.+++-.+.+++
T Consensus 71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~ 114 (270)
T TIGR00417 71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKK 114 (270)
T ss_pred CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHH
Confidence 3446999998865 3345566666656689999999887777665
No 417
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=73.48 E-value=3.6 Score=37.70 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC-----ChhHHHHHHHhcc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-----DPKKFDRVLNALA 240 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~-----~~~~~~~~~~~Ga 240 (243)
.-.|++|+|+|.|.+|.+.++-++..|.+.+++... +.+..+.+.+-|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF 86 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF 86 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC
Confidence 456799999999999998888888889844444422 2344455544454
No 418
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=73.42 E-value=9.3 Score=33.13 Aligned_cols=48 Identities=23% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
+++|+...+|..|.+.+.+++.+|.+-++.+. .++.+.+.++.+||+.
T Consensus 70 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~V 119 (324)
T cd01563 70 VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATV 119 (324)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEE
Confidence 45665555699999999999999994444443 2456888999999863
No 419
>PRK07402 precorrin-6B methylase; Provisional
Probab=73.28 E-value=14 Score=29.36 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=32.4
Q ss_pred hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
......+++++||=+|+|. |..++.+++.....+|++++.+++.++.+++
T Consensus 33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 4455677888887777632 3334455554432389999999988776653
No 420
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.20 E-value=5.1 Score=36.76 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+|||+|+|++|.-.+..+...|++.|..++.+-
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccc
Confidence 678899999999999888888899998888887544
No 421
>PRK06046 alanine dehydrogenase; Validated
Probab=73.09 E-value=14 Score=32.19 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (243)
+...++.|+|+|..|...+..+. ..++++|.++++++++.+.+.
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~ 171 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV 171 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH
Confidence 44578999999999988777665 567888999999988765543
No 422
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=72.95 E-value=10 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=23.8
Q ss_pred EEEEcC-CHHHHHHHHHHHHcC--CCEEEEEcC
Q 026087 198 VAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDI 227 (243)
Q Consensus 198 vlV~G~-g~~G~~a~~~a~~~G--~~~vi~~~~ 227 (243)
|.|+|+ |.+|..++.+.+... + +|++...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa 32 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSA 32 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEc
Confidence 568898 999999999999887 6 6777754
No 423
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=72.86 E-value=7.2 Score=33.89 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
+.|||++|+.-.|..|+-++.+++.+|+ +|-.+..
T Consensus 89 lePgd~vLv~~~G~wg~ra~D~~~r~ga-~V~~v~~ 123 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWGQRAADCARRYGA-EVDVVEA 123 (385)
T ss_pred cCCCCeEEEEEechHHHHHHHHHHhhCc-eeeEEec
Confidence 5699999998889999999999999999 7777643
No 424
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=72.76 E-value=6.2 Score=36.46 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
+.-.+.+||+|+|..|+.|+.-+..+|+ +|+.+..++.
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKeps 158 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPS 158 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCc
Confidence 4456899999999999999999999999 8999976654
No 425
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.58 E-value=15 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=39.4
Q ss_pred cccccchhhhhhhhcCC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 175 l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
++++...... +++..+ --.|++|.|+|. +.+|.-.+.++...|+ +|+++.+..+.+
T Consensus 139 ~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~~l 196 (301)
T PRK14194 139 TPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRSTDA 196 (301)
T ss_pred CCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCCCH
Confidence 3444333333 334334 357899999998 5999999999999999 899986554433
No 426
>PRK08639 threonine dehydratase; Validated
Probab=72.45 E-value=14 Score=33.43 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=35.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhccc
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAM 241 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~ 241 (243)
+.|+..++|..|...+..|+.+|.+-++++.. +..|.+.++.+||+
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 44555577999999999999999955555532 34688999999995
No 427
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=72.36 E-value=15 Score=28.46 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=36.3
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
+.....+.+++++|=+|+|. |.++..+++. +. ++++++.+++-.+.+++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~-G~lt~~l~~~-~~-~v~~vE~~~~~~~~~~~ 53 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGK-GALTEELLER-AA-RVTAIEIDPRLAPRLRE 53 (169)
T ss_pred HHHhcCCCCcCEEEEECCCc-cHHHHHHHhc-CC-eEEEEECCHHHHHHHHH
Confidence 34556677888888888863 6666666766 55 89999999887777764
No 428
>PLN02852 ferredoxin-NADP+ reductase
Probab=72.24 E-value=7.1 Score=36.24 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAA 217 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~ 217 (243)
+..+++|+|+|+|.+|+-++..+...
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 45789999999999998887777665
No 429
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=72.09 E-value=11 Score=38.19 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
...|++|+|+|+|.+|.-++..++.+|++.|..+.+
T Consensus 568 ~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r 603 (1006)
T PRK12775 568 ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR 603 (1006)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence 457899999999999999999999999966665543
No 430
>PRK08813 threonine dehydratase; Provisional
Probab=71.95 E-value=17 Score=32.23 Aligned_cols=45 Identities=20% Similarity=0.071 Sum_probs=33.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 198 VAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
|+...+|..|++.+..++.+|.+-+|.+. .++.|.+.++.+||..
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeV 130 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATV 130 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEE
Confidence 43335699999999999999995444442 4456889999999864
No 431
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=71.83 E-value=8.5 Score=32.90 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~----G~------~~vi~~~~~ 228 (243)
.-...+|+++|+|..|...+.+.... |. ++++.+|+.
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 33467889999998888777666655 87 689988754
No 432
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=71.78 E-value=11 Score=36.67 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=32.0
Q ss_pred CEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+|.|+|+|.+|...++++. ..|. .|+..+.+++.++..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~ 344 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNA 344 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 47999999999998777765 6899 899999998765443
No 433
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=71.41 E-value=15 Score=30.63 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=38.3
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHhc
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNAL 239 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~G 239 (243)
+......+++++||=+|+|. |..+..+++.. +. +|+++|.+++-++.+++.+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~ 73 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERG 73 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcC
Confidence 34555667889998888755 55666777765 55 8999999998887776544
No 434
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=71.35 E-value=13 Score=33.84 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=34.7
Q ss_pred EEEE-cCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 198 VAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
.+|. .+|+.|+..+..++.+|++-+|++. .++.|.+.++.+||..
T Consensus 154 ~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeV 201 (431)
T TIGR02035 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTV 201 (431)
T ss_pred eEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 4454 4599999999999999995555553 3456899999999864
No 435
>PRK07476 eutB threonine dehydratase; Provisional
Probab=71.14 E-value=15 Score=31.88 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=33.6
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
|+....|+.|.+.+.+++..|.+-++.+.. ++.|.+.++.+||+.
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V 116 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEV 116 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEE
Confidence 444456999999999999999954444432 346888899999864
No 436
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.07 E-value=11 Score=36.73 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=31.9
Q ss_pred CEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+|.|+|+|.+|...++.+. ..|. .|+..+.+++.++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~ 349 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHA 349 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 67999999999988777665 8899 899999988765543
No 437
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=71.00 E-value=9.2 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+|||+|.|++|.-++..+...|.+++..+|.+.
T Consensus 25 ~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 25 MHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred hhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 347899999999999999999999998888887544
No 438
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=70.74 E-value=22 Score=29.28 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCEEEEE-cCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhcccC
Q 026087 186 VWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAMS 242 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~~ 242 (243)
.+..+++..-|.+++. |...+-+.++++++. +|..++++-..+++..+.++++|++.
T Consensus 58 ~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ 116 (225)
T COG0569 58 VLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADV 116 (225)
T ss_pred HHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcE
Confidence 4566777777777665 778899999999976 89989999999999999999999763
No 439
>PRK06382 threonine dehydratase; Provisional
Probab=70.64 E-value=18 Score=32.59 Aligned_cols=45 Identities=24% Similarity=0.127 Sum_probs=34.0
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
|+..++|..|.+.+..++.+|.+-++++.. +..|.+.++.+||+.
T Consensus 76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~V 122 (406)
T PRK06382 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHV 122 (406)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEE
Confidence 444466999999999999999955555533 346888899999863
No 440
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=70.47 E-value=5.7 Score=33.47 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=31.9
Q ss_pred hhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CEEEEEcCC
Q 026087 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (243)
Q Consensus 183 ~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~----G~------~~vi~~~~~ 228 (243)
++++......-...+++++|+|..|...+.+.... |. ++++.+|+.
T Consensus 13 l~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 13 LNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 34444444445678899999999998888888777 88 789999854
No 441
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=70.27 E-value=16 Score=31.72 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=33.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS 242 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~ 242 (243)
.|+....|..|.+.+..++.+|.+-++.+.. ++.|.+.++.+||+.
T Consensus 69 ~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V 116 (317)
T TIGR02991 69 GVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEV 116 (317)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEE
Confidence 4444455999999999999999943343332 346888899999864
No 442
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=70.23 E-value=9.9 Score=32.65 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...+|||+|.|++|.-.+..+..+|.+++..+|.+
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34789999999999999999999999889888754
No 443
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=70.22 E-value=8.3 Score=32.23 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+|||+|+|++|..++..+..+|.+++..++.+.
T Consensus 29 ~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~ 64 (254)
T COG0476 29 KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT 64 (254)
T ss_pred hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence 347899999999999999999999998888877543
No 444
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=69.92 E-value=25 Score=26.77 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
--.|++|+|+|- ..+|.-.+.++...|+ +|+.+.+...
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t~ 63 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKTI 63 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCCc
Confidence 457899999997 7899999999999999 8988875443
No 445
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=69.90 E-value=6.7 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC----------EEEEEcCC
Q 026087 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS----------RVIGIDID 228 (243)
Q Consensus 190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~----------~vi~~~~~ 228 (243)
...-...+|+++|+|..|...+.+....+.+ +++.+|+.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 3334568899999999998888777766664 78888753
No 446
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=69.88 E-value=15 Score=30.02 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=30.5
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
...++.+||+.|+|. |.-++-+| ..|+ +|+++|.++.-++.+
T Consensus 34 ~~~~~~rvL~~gCG~-G~da~~LA-~~G~-~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 34 ALPAGSRVLVPLCGK-SLDMLWLA-EQGH-EVLGVELSELAVEQF 75 (218)
T ss_pred CCCCCCeEEEeCCCC-hHhHHHHH-hCCC-eEEEEccCHHHHHHH
Confidence 345678999998743 34444454 4799 899999999877754
No 447
>PTZ00367 squalene epoxidase; Provisional
Probab=69.79 E-value=7.7 Score=36.69 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|+|+|+|..|++++..+...|. +|.+++++.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 368899999999998888888899 899998764
No 448
>PLN02712 arogenate dehydrogenase
Probab=69.64 E-value=15 Score=35.48 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=34.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga 240 (243)
.+|.|+|.|.+|...+..++..|. +|+++++++.+ +.+.++|+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~-~~A~~~Gv 95 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS-LAARSLGV 95 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHHHcCC
Confidence 479999999999998888888898 89999887554 45666664
No 449
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=69.47 E-value=7 Score=32.69 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
..++|||+|+|. |..+-++++....++|.+++.+++-.+.++++
T Consensus 76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~ 119 (246)
T PF01564_consen 76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKY 119 (246)
T ss_dssp ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH
T ss_pred CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHh
Confidence 678999998654 44455677766666999999999988888774
No 450
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=69.35 E-value=13 Score=34.07 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=35.7
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
...++++++||=+|+|. |..++.+++..++ +|+++|.+++-++.+++
T Consensus 261 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 261 KLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALE 307 (475)
T ss_pred hcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHH
Confidence 34467888999898755 4556677887788 89999999887776654
No 451
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=69.20 E-value=8.2 Score=37.12 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=27.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
..|+|+|+|.+|+.++..+...|. +|++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecC
Confidence 479999999999998888888899 89998865
No 452
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=69.11 E-value=8 Score=35.35 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=23.7
Q ss_pred EEEEEcCCHHHHHHH-HHHHHc-CCCEEEEEcCC
Q 026087 197 IVAVFGLGTVGLAVA-EGAKAA-GASRVIGIDID 228 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~-~~a~~~-G~~~vi~~~~~ 228 (243)
.|+|+|+|.+|+.++ .+++.. |. +|++++..
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCC
Confidence 488899999999977 455543 77 88888754
No 453
>PRK07804 L-aspartate oxidase; Provisional
Probab=68.91 E-value=7.7 Score=36.40 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=26.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.|||+|+|..|+.|+.-|...|+ +|++++...
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~ 49 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGR-RVLVVTKAA 49 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-eEEEEEccC
Confidence 48889999999998888888898 788876433
No 454
>PRK14968 putative methyltransferase; Provisional
Probab=68.66 E-value=13 Score=28.97 Aligned_cols=42 Identities=31% Similarity=0.545 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (243)
..+++++|-.|+|. |..+..+++. +. ++++++.+++-.+.++
T Consensus 21 ~~~~~~vLd~G~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~ 62 (188)
T PRK14968 21 DKKGDRVLEVGTGS-GIVAIVAAKN-GK-KVVGVDINPYAVECAK 62 (188)
T ss_pred ccCCCEEEEEcccc-CHHHHHHHhh-cc-eEEEEECCHHHHHHHH
Confidence 36788898887532 3345555555 66 8999999988776664
No 455
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=68.54 E-value=9.1 Score=37.44 Aligned_cols=37 Identities=35% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
...|++|+|+|+|.+|.-++..+...|+++|..+.+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3568999999999999999999999999657777654
No 456
>PRK14851 hypothetical protein; Provisional
Probab=68.41 E-value=9.7 Score=36.85 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+.+|+|+|.|++|..++..+..+|.++++.+|.+.
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 458899999999999999999999999999887543
No 457
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=68.24 E-value=8.4 Score=36.88 Aligned_cols=32 Identities=34% Similarity=0.323 Sum_probs=27.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
-.|+|+|+|.+|..++.-+...|. +|+.++..
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~ 103 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL-RVGLVERE 103 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence 458999999999998888888899 89998764
No 458
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=68.23 E-value=10 Score=33.77 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCHHHHHHH-HHHHHcCCCEEEEEcCC
Q 026087 192 VEPGSIVAVFGLGTVGLAVA-EGAKAAGASRVIGIDID 228 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~-~~a~~~G~~~vi~~~~~ 228 (243)
..+...|+|+|+|.+|++++ ++++..|..+|.+++..
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 34455688999999998866 45554584378888754
No 459
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=68.18 E-value=5.9 Score=29.64 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=29.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHHH
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRVL 236 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~~~ 236 (243)
-+|-|+|+|.+|......++..|. .|..+.+ +.++.+.+.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~ 51 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAA 51 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccc
Confidence 478899999999998888999999 7888754 343444443
No 460
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=68.15 E-value=18 Score=30.03 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=35.8
Q ss_pred hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
......+++++||=+|+| .|..+..+++..+..+|+++|.+++-++.+++
T Consensus 24 l~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~ 73 (258)
T PRK01683 24 LARVPLENPRYVVDLGCG-PGNSTELLVERWPAARITGIDSSPAMLAEARS 73 (258)
T ss_pred HhhCCCcCCCEEEEEccc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 344556788999888874 24456677776643499999999987777654
No 461
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.88 E-value=13 Score=35.71 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh--------hHHHHHHHhccc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP--------KKFDRVLNALAM 241 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~--------~~~~~~~~~Ga~ 241 (243)
..|++|+|+|+|.+|.-++..+...|+++|..+.+.+ +..+.+++.|..
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~ 522 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGAN 522 (654)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCe
Confidence 3578999999999999998888999986677665432 234555555543
No 462
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.75 E-value=15 Score=37.13 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|++|+|+|+|.+|.-++..++..|+ +|+.+.+.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRR 479 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEec
Confidence 68999999999999999999999999 67776544
No 463
>PLN03075 nicotianamine synthase; Provisional
Probab=67.64 E-value=22 Score=30.68 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~ 238 (243)
+.++|+=+|.|+.++.++-+++.+. ..+++.+|.+++..+.+++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~ 168 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRL 168 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 7789999999999998888887553 33899999999988887764
No 464
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=67.61 E-value=23 Score=30.85 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 192 ~~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
.+...++.|+|+|..+.+.+..+. ....++|.+.+++.++.+.+
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~ 169 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKF 169 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 345688999999999988665544 45677999999999887544
No 465
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=67.58 E-value=21 Score=30.09 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=39.6
Q ss_pred hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (243)
+....++.||++|+=.|.| .|.+++-+|++.|- .+|+.++..++..+.+++
T Consensus 86 I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~ 137 (256)
T COG2519 86 IVARLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARE 137 (256)
T ss_pred HHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHH
Confidence 4467789999999876654 47777888887774 699999999998877653
No 466
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=67.51 E-value=10 Score=30.75 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=35.0
Q ss_pred hhhcCCCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 186 VWNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 186 ~~~~~~~~~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
..+..+++++|.++|+.. -++..-++..+|..|+ +||++.+-+
T Consensus 96 ~l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa-~vI~vTSl~ 141 (243)
T COG4821 96 FLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGA-KVIAVTSLD 141 (243)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCC-eEEEEehhh
Confidence 346778999999988843 4899999999999999 888886443
No 467
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=67.49 E-value=10 Score=32.36 Aligned_cols=43 Identities=37% Similarity=0.412 Sum_probs=29.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHHh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~-~vi~~~~~~~~~~~~~~~ 238 (243)
++|+-+|+|++=+.++.+++..+.+ .|+.+|.+++..++++++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~l 165 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRL 165 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHH
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 5999999999999999999876531 788999999887777553
No 468
>PRK07334 threonine dehydratase; Provisional
Probab=67.47 E-value=19 Score=32.45 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
.|+....|..|.+.+.+++.+|.+-++++. .++.|++.++.+||+.
T Consensus 73 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v 120 (403)
T PRK07334 73 GVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEV 120 (403)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence 354446699999999999999995455443 3457889999999863
No 469
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=67.46 E-value=18 Score=29.53 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~ 235 (243)
.++.+||+.|+|. |.-++-+| ..|+ .|+++|.++.-++.+
T Consensus 33 ~~~~rvLd~GCG~-G~da~~LA-~~G~-~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGK-SLDLAWLA-EQGH-RVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCc-hhHHHHHH-hCCC-eEEEEeCCHHHHHHH
Confidence 5778999998753 45555555 4799 899999999877764
No 470
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=67.45 E-value=13 Score=33.43 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCCCEEEEEcC-CHHHHH--HHHHHHHcCCCEEEEEcC
Q 026087 193 EPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 193 ~~g~~vlV~G~-g~~G~~--a~~~a~~~G~~~vi~~~~ 227 (243)
..++++||+|+ +.+|++ .++.+ ..|+ ++++++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEec
Confidence 45689999987 899998 45555 8899 7777763
No 471
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=67.34 E-value=8.2 Score=35.92 Aligned_cols=31 Identities=32% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
.-.|+|+|+|+.|+.++..+...|. +++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~ 241 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGI-RTGIVA 241 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 3468999999999999999999999 666664
No 472
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=67.25 E-value=25 Score=29.35 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=37.7
Q ss_pred hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
.....++|++||=+++| +|-.+..+++..|-.+|+++|.+++-++.+++
T Consensus 45 ~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~ 93 (238)
T COG2226 45 SLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVARE 93 (238)
T ss_pred HhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence 34455689999877553 47888899998886699999999987776654
No 473
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=66.86 E-value=18 Score=29.96 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
...++++||-+|+|. |..+..+++ .|. +++++|.+++.++.+++.
T Consensus 39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 39 PQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQK 83 (251)
T ss_pred CccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhh
Confidence 344678899898865 555555544 577 899999999988877764
No 474
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=66.81 E-value=18 Score=24.53 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEEcC-CHHHHHHHHHH-HHcCCCEEEEEc
Q 026087 190 AKVEPGSIVAVFGL-GTVGLAVAEGA-KAAGASRVIGID 226 (243)
Q Consensus 190 ~~~~~g~~vlV~G~-g~~G~~a~~~a-~~~G~~~vi~~~ 226 (243)
..+...++|||+|+ ++.|+++-..+ -..|+ ..+.+.
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~ 71 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVS 71 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEe
Confidence 33444489999998 89999753333 36677 777764
No 475
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=66.39 E-value=23 Score=28.56 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=33.2
Q ss_pred hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237 (243)
Q Consensus 187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (243)
......+++++||-+|+|. |..+..+++.. . ++++++.+++..+.+++
T Consensus 71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~ 118 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKR 118 (212)
T ss_pred HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHH
Confidence 4556788999999998753 33444555543 3 89999999887665543
No 476
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=66.23 E-value=16 Score=28.99 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=29.3
Q ss_pred cCCCCCCCEEEEE----cCCHHHHHHHHHHHHcCCCEEEEE
Q 026087 189 TAKVEPGSIVAVF----GLGTVGLAVAEGAKAAGASRVIGI 225 (243)
Q Consensus 189 ~~~~~~g~~vlV~----G~g~~G~~a~~~a~~~G~~~vi~~ 225 (243)
...+++|++|||+ ..|.+-.+.+.+.+.+|+ .|+.+
T Consensus 110 ~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga-~vvg~ 149 (179)
T COG0503 110 KDALKPGDRVLIVDDLLATGGTALALIELLEQAGA-EVVGA 149 (179)
T ss_pred hhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCC-EEEEE
Confidence 3446799999997 459999999999999999 66554
No 477
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=65.80 E-value=9.7 Score=31.60 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=25.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~ 227 (243)
..|+|.|+|+.|+.|+-.+...|. +|..+.+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~ 61 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGL-KVAIFER 61 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCc-eEEEEEe
Confidence 346777999999999998888899 7777753
No 478
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=65.68 E-value=10 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
..+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 271 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRA 271 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccc
Confidence 4679999999999999999999999 788887543
No 479
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=65.61 E-value=8.9 Score=36.82 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=25.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
.|||+|+|..|++|+.-|+..|+ +|+++.
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~-~Vilie 65 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGY-NVKVFC 65 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEe
Confidence 48999999999998888888899 787775
No 480
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=65.41 E-value=24 Score=30.42 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
++..++.|+|+|..+.+.++.+. ....++|.+.+++.++.+..
T Consensus 115 ~da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f 158 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAF 158 (301)
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 45688999999999988776666 46788999999999876543
No 481
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=65.41 E-value=9.3 Score=36.50 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=25.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
.|||+|+|.-|+.|+.-|...|+ +|++++..
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGY-KTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEecc
Confidence 48999999999988888888899 78887643
No 482
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=65.40 E-value=16 Score=25.61 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=18.1
Q ss_pred eEEEEEEeCC--------CC-CcCCCCCEEeeecc
Q 026087 71 AAGIVESVGE--------GV-TEVQPGDHVIPCYQ 96 (243)
Q Consensus 71 ~vG~V~~~G~--------~~-~~~~~Gd~V~~~~~ 96 (243)
..|+|+++|+ .+ ..+++||+|+...+
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY 69 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence 4699999999 22 25899999986643
No 483
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=65.35 E-value=12 Score=34.32 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
+-.++++|+|+|.+|+=..++.+.+|. +|..+.+.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~ 207 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDR 207 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Confidence 455889999999999999999999999 8888877664
No 484
>PRK06815 hypothetical protein; Provisional
Probab=65.27 E-value=27 Score=30.25 Aligned_cols=47 Identities=26% Similarity=0.134 Sum_probs=34.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS 242 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~ 242 (243)
..++....|..|.+.+.+++.+|++-++.+. .++.|++.++.+||+.
T Consensus 69 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V 117 (317)
T PRK06815 69 QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEV 117 (317)
T ss_pred ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence 3344445699999999999999995444443 2345888999999863
No 485
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=65.25 E-value=24 Score=30.62 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=40.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~ 241 (243)
..+|--+|.|.+|...+.-+-..|+ +|++.+++.++.+.+.+.|+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~dr~~~k~~~f~~~Ga~ 80 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYDRTKDKCKEFQEAGAR 80 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCC-EEEEEeCcHHHHHHHHHhchh
Confidence 3567777999999999988899999 999999999999999999875
No 486
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=65.11 E-value=13 Score=35.70 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (243)
Q Consensus 191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~ 228 (243)
....|++|+|+|+|.+|.-++..+...|+++|..+.+.
T Consensus 319 ~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35679999999999999998888888998667776543
No 487
>PLN02529 lysine-specific histone demethylase 1
Probab=65.10 E-value=12 Score=36.71 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
....|+|+|+|..|+.++..+...|. +|+.++.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCc
Confidence 34578899999999999999999999 788887654
No 488
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=64.82 E-value=23 Score=30.72 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV 235 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (243)
+..+++.|+|+|..+...+..+. .++.++|.+.++++++.+.+
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~ 169 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAF 169 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHH
Confidence 45578899999999998777765 57889999999999876554
No 489
>PLN00016 RNA-binding protein; Provisional
Probab=64.80 E-value=9.5 Score=33.79 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCCEEEEE----cC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087 193 EPGSIVAVF----GL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (243)
Q Consensus 193 ~~g~~vlV~----G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~ 231 (243)
....+|||+ |+ |.+|...+..+...|. +|+++++++.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcc
Confidence 344689999 98 9999999998888998 89999887653
No 490
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=64.42 E-value=20 Score=27.97 Aligned_cols=40 Identities=28% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (243)
Q Consensus 192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~ 232 (243)
--.|++++|+|- ..+|.-...++...|+ .|..+....+.+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h~~T~~l 73 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICHSKTKNL 73 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTSSSH
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC-eEEeccCCCCcc
Confidence 467899999997 6899999999999999 888886554333
No 491
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=17 Score=25.92 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.9
Q ss_pred eEEEEEEeCCCCC---------cCCCCCEEeee
Q 026087 71 AAGIVESVGEGVT---------EVQPGDHVIPC 94 (243)
Q Consensus 71 ~vG~V~~~G~~~~---------~~~~Gd~V~~~ 94 (243)
..|+|+++|++.. ..++||+|+..
T Consensus 44 ~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlp 76 (104)
T KOG1641|consen 44 LQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLP 76 (104)
T ss_pred ceEEEEEEcCccccCCCCCcCccccCCCEEEee
Confidence 4689999998754 38899999855
No 492
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.40 E-value=30 Score=29.87 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=37.5
Q ss_pred cccccchhhhhhhhcCC-CCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEc-CCh
Q 026087 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGID-IDP 229 (243)
Q Consensus 175 l~~~~~ta~~~~~~~~~-~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~-~~~ 229 (243)
++++....+. +++..+ --.|++|+|+| .+.+|.-.+.++...|+ .|+++. ++.
T Consensus 138 ~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~ 193 (296)
T PRK14188 138 VPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR 193 (296)
T ss_pred cCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC
Confidence 3444333333 333333 35799999999 59999999999999999 899984 443
No 493
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=64.38 E-value=11 Score=35.06 Aligned_cols=33 Identities=30% Similarity=0.175 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (243)
Q Consensus 193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~ 226 (243)
++...|+|+|+|+-|+.++..+...|. +|+.++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 344579999999999999999999999 666663
No 494
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=64.24 E-value=18 Score=31.00 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=33.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238 (243)
Q Consensus 196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~ 238 (243)
++|||+|+|. |..+=.+++....+++++++.+++-.++++++
T Consensus 78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKY 119 (282)
T ss_pred CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHh
Confidence 5999987643 34455777877778999999999999988875
No 495
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=64.23 E-value=10 Score=33.00 Aligned_cols=35 Identities=46% Similarity=0.719 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.|+.++|.|=|.+|.-++|.+|.+|+ +||++..++
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLkg~g~-~VivTEiDP 247 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALKGFGA-RVIVTEIDP 247 (434)
T ss_pred cccEEEEeccCccchhHHHHHhhcCc-EEEEeccCc
Confidence 46666666779999999999999999 999998776
No 496
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=64.22 E-value=15 Score=33.15 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCCEEEEEcC-----------------CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 193 EPGSIVAVFGL-----------------GTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 193 ~~g~~vlV~G~-----------------g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
-.|.++||.|+ |.+|.+.++.+..+|+ +|+.++++.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~ 238 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPV 238 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCc
Confidence 36889999955 6699999999999999 888886543
No 497
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.17 E-value=27 Score=30.02 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=36.8
Q ss_pred cccccchhhhhhhhcCC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 175 l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
++++....+. +++..+ --.|++|+|+|. ..+|.-.+.++...|+ +|+.+.+..+
T Consensus 138 ~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t~ 193 (285)
T PRK14189 138 RPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKTR 193 (285)
T ss_pred cCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCCC
Confidence 3444333333 333333 347899999998 5669999999999999 8887765443
No 498
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=64.12 E-value=13 Score=32.64 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=30.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (243)
Q Consensus 195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~ 230 (243)
-..++|.|+|.+|+.+...++..|. +|..++..++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccc
Confidence 5778888999999999999999998 7887776654
No 499
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=64.10 E-value=24 Score=35.79 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=32.5
Q ss_pred cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
...+.++++|+|+|+|.+|+..+..+...|.+.|..++..+
T Consensus 311 ~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 311 RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 33456899999999999999988888889975666766554
No 500
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.07 E-value=14 Score=33.39 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (243)
Q Consensus 194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~ 229 (243)
.+++|+|+|+|.+|.-++..++..|. +|..+.+++
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 190 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAAS 190 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 45789999999999998888889998 788876543
Done!