BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026088
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 38 YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTN-HSVVQTYNFTTYKECDY 96
+ VGDS GW DY +WA + F +GD L+FN + H+V+Q + +K C+
Sbjct: 5 HKVGDSTGW---TTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQV-DQEQFKSCN- 59
Query: 97 DDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSH 156
++ P+ + TSG +PL + GT YF C+ GQ +I V
Sbjct: 60 ------------SSSPAASYTSGAD-SIPLKRPGTFYFLCG--IPGHCQLGQKVEIKVDP 104
Query: 157 G 157
G
Sbjct: 105 G 105
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 38 YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTN-HSVVQTYNFTTYKECDY 96
+ VGD+ GW S Y QWA K F +GD L FN N H+V + ++ C++
Sbjct: 6 HIVGDNTGW--SVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 63
Query: 97 DDALDSDTKLWSAADPSNTATSGVTVPV--PLLKEGTTYFFSSDYDGDQCRSGQHFKINV 154
++ D+D + T PV L + G YF + G C +GQ INV
Sbjct: 64 VNS-DNDVER--------------TSPVIERLDELGMHYFVCT--VGTHCSNGQKLSINV 106
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 22/121 (18%)
Query: 36 KNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECD 95
++Y VG + W + Y WA K F +GD L F+ V
Sbjct: 2 EDYDVGGDMEWKRPSDPKF--YITWATGKTFRVGDELEFDFAAGMHDVAVVT-------- 51
Query: 96 YDDALDSDTKLWSAADPSNTATSGVTVPVPLL--KEGTTYFFSSDYDGDQCRSGQHFKIN 153
DA D+ K N + T PV ++ G Y+ + GD CR GQ IN
Sbjct: 52 -KDAFDNCKK-------ENPISHMTTPPVKIMLNTTGPQYYICTV--GDHCRVGQKLSIN 101
Query: 154 V 154
V
Sbjct: 102 V 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 24/116 (20%)
Query: 38 YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYD 97
Y VG S GW + E W K F GD L+FN + + V N + C+
Sbjct: 3 YVVGGSGGWTFNTE-------SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCN-- 53
Query: 98 DALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKIN 153
+ K++++ + +P +G +YF ++ G C+SG +N
Sbjct: 54 --TPAGAKVYTSGRDQ------IKLP-----KGQSYFI-CNFPG-HCQSGMKIAVN 94
>pdb|1ZRL|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii)
pdb|1ZRO|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
In The Presence Of (Alpha)2,3-Sialyllactose
pdb|1ZRO|B Chain B, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
In The Presence Of (Alpha)2,3-Sialyllactose
Length = 602
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 94 CDYDDALDSDTKLWSAADPSNTATSGVTVP 123
CD +++D++TK+W P +T V VP
Sbjct: 318 CD-KNSVDTNTKVWECKKPYKLSTKDVCVP 346
>pdb|1AE6|H Chain H, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 218
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 128 KEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSEQSPAPNSADYNNDESAPD 187
+E TTY+++ DY GQ + VS K P PS AP SA N
Sbjct: 98 REKTTYYYAMDY------WGQGTSVTVSAAKTTP-----PSVYPLAPGSAAQTNSMVTLG 146
Query: 188 LVVPSTFNKP 197
+V F +P
Sbjct: 147 CLVKGYFPEP 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,882,683
Number of Sequences: 62578
Number of extensions: 287107
Number of successful extensions: 522
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 11
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)