Query 026089
Match_columns 243
No_of_seqs 200 out of 1264
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 1.5E-80 3.3E-85 577.2 19.9 239 1-240 1-255 (347)
2 PLN03019 carbonic anhydrase 100.0 4.4E-54 9.5E-59 398.3 16.4 179 63-241 70-251 (330)
3 PLN00416 carbonate dehydratase 100.0 1.1E-48 2.5E-53 352.9 15.8 174 66-240 1-176 (258)
4 PLN03006 carbonate dehydratase 100.0 2.2E-45 4.8E-50 337.3 13.3 156 84-240 49-206 (301)
5 COG0288 CynT Carbonic anhydras 100.0 3.7E-38 8E-43 276.4 11.7 122 113-240 2-124 (207)
6 KOG1578 Predicted carbonic anh 100.0 5.7E-39 1.2E-43 290.3 6.5 189 43-242 2-190 (276)
7 cd00884 beta_CA_cladeB Carboni 100.0 1.4E-37 3.1E-42 269.3 10.3 120 121-240 1-121 (190)
8 PRK10437 carbonic anhydrase; P 100.0 3.1E-37 6.8E-42 273.1 12.2 119 114-240 3-121 (220)
9 cd00883 beta_CA_cladeA Carboni 100.0 2.1E-37 4.5E-42 265.7 10.2 111 122-240 1-111 (182)
10 PRK15219 carbonic anhydrase; P 100.0 3.6E-37 7.8E-42 276.4 12.2 121 108-240 50-173 (245)
11 PLN02154 carbonic anhydrase 100.0 7.4E-37 1.6E-41 279.8 13.2 131 109-240 70-201 (290)
12 cd03378 beta_CA_cladeC Carboni 100.0 3.6E-34 7.8E-39 241.4 11.9 105 111-222 1-108 (154)
13 cd00382 beta_CA Carbonic anhyd 100.0 4E-29 8.6E-34 201.5 8.9 76 144-223 1-76 (119)
14 PF00484 Pro_CA: Carbonic anhy 100.0 2.1E-29 4.5E-34 207.4 6.6 86 148-240 1-86 (153)
15 cd03379 beta_CA_cladeD Carboni 99.9 3.2E-27 6.8E-32 195.2 6.3 75 144-225 1-75 (142)
16 KOG1578 Predicted carbonic anh 98.3 1.7E-08 3.6E-13 92.6 -5.9 121 118-241 3-150 (276)
17 TIGR02742 TrbC_Ftype type-F co 58.1 36 0.00079 28.3 6.2 56 130-204 57-112 (130)
18 PF12778 PXPV: PXPV repeat (3 54.0 6.9 0.00015 23.5 0.9 18 41-58 4-21 (22)
19 PF04019 DUF359: Protein of un 46.3 1.4E+02 0.003 24.6 7.7 80 140-227 6-85 (121)
20 PF07859 Abhydrolase_3: alpha/ 36.5 28 0.00061 28.8 2.3 34 191-224 51-89 (211)
21 PRK11440 putative hydrolase; P 35.8 74 0.0016 26.8 4.8 53 164-226 90-143 (188)
22 TIGR01250 pro_imino_pep_2 prol 33.7 54 0.0012 27.1 3.6 33 192-224 82-114 (288)
23 PF12697 Abhydrolase_6: Alpha/ 31.2 59 0.0013 25.5 3.3 32 192-223 52-83 (228)
24 PRK03592 haloalkane dehalogena 30.7 55 0.0012 28.6 3.3 33 193-225 80-112 (295)
25 PF00561 Abhydrolase_1: alpha/ 29.7 57 0.0012 26.3 3.0 34 190-223 28-61 (230)
26 PRK14066 exodeoxyribonuclease 29.6 1E+02 0.0022 23.3 4.2 18 66-83 1-18 (75)
27 KOG0025 Zn2+-binding dehydroge 27.6 87 0.0019 30.3 4.2 43 161-214 153-195 (354)
28 TIGR03100 hydr1_PEP hydrolase, 27.5 71 0.0015 28.3 3.5 32 191-223 84-116 (274)
29 PLN02824 hydrolase, alpha/beta 27.2 70 0.0015 28.0 3.3 31 194-224 90-120 (294)
30 KOG4234 TPR repeat-containing 26.3 54 0.0012 30.4 2.5 18 69-86 182-199 (271)
31 COG1116 TauB ABC-type nitrate/ 25.6 40 0.00087 31.2 1.6 17 205-221 29-45 (248)
32 PF08822 DUF1804: Protein of u 25.1 1.4E+02 0.003 26.1 4.7 56 68-125 105-160 (165)
33 PRK10803 tol-pal system protei 24.7 91 0.002 28.4 3.7 70 50-125 23-94 (263)
34 PF01764 Lipase_3: Lipase (cla 24.0 96 0.0021 24.0 3.3 35 191-225 49-83 (140)
35 KOG2781 U3 small nucleolar rib 23.5 1.9E+02 0.0041 27.3 5.5 65 141-214 78-142 (290)
36 PHA00425 DNA packaging protein 22.8 1.5E+02 0.0033 23.4 4.0 49 92-141 14-64 (88)
37 PRK09778 putative antitoxin of 22.7 1.1E+02 0.0023 24.7 3.2 43 12-67 6-50 (97)
38 PF00857 Isochorismatase: Isoc 22.5 2.3E+02 0.0049 22.9 5.3 50 168-227 85-135 (174)
39 PF14357 DUF4404: Domain of un 22.5 3.6E+02 0.0077 20.7 6.1 58 73-130 4-67 (85)
40 PRK10566 esterase; Provisional 22.4 1.1E+02 0.0023 25.9 3.5 28 194-221 93-122 (249)
41 cd01015 CSHase N-carbamoylsarc 22.3 1.6E+02 0.0035 24.5 4.5 52 165-226 84-136 (179)
42 cd01878 HflX HflX subfamily. 21.9 59 0.0013 27.1 1.8 20 203-222 39-58 (204)
43 PF02093 Gag_p30: Gag P30 core 21.8 1.1E+02 0.0024 27.8 3.5 71 52-127 84-156 (211)
44 PF13580 SIS_2: SIS domain; PD 21.0 1.3E+02 0.0028 24.3 3.5 39 164-212 99-138 (138)
45 KOG4387 Ornithine decarboxylas 20.8 97 0.0021 27.7 2.9 34 190-223 119-152 (191)
46 PF11123 DNA_Packaging_2: DNA 20.5 1.7E+02 0.0037 22.8 3.9 48 92-140 12-61 (82)
47 TIGR02427 protocat_pcaD 3-oxoa 20.1 1.5E+02 0.0033 23.7 3.8 31 192-222 65-95 (251)
48 PRK11070 ssDNA exonuclease Rec 20.1 96 0.0021 31.8 3.1 19 204-222 68-86 (575)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.5e-80 Score=577.25 Aligned_cols=239 Identities=75% Similarity=1.141 Sum_probs=221.3
Q ss_pred CCcccccceeecccccccccccccCCCCc-eeEEecc------------CCCCCCCcccCCccccCCCCccCcchhHHhh
Q 026089 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (243)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (243)
|||++|||||+||++++++++++ .++|| ++||+|+ ++++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 026089 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (243)
Q Consensus 68 ~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~ 145 (243)
++||||||++|+|||+||++|+++|++||+++|+||++.. ...+++++++|++||++|+++.+..++++|.++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhcc
Q 026089 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (243)
Q Consensus 146 P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~ 225 (243)
|+++||+|+||||+|+.|||++|||+||+||+||+|+++|...++++.++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999886556679999999999999999999999999999999987
Q ss_pred ccCCCCC-chhhcccc
Q 026089 226 TFDGNNS-TLGENWHP 240 (243)
Q Consensus 226 ~~~g~~~-~~i~~Wl~ 240 (243)
.+++... .+|++||.
T Consensus 240 ~~~g~~~~~~I~~wl~ 255 (347)
T PLN03014 240 PLDGNNSTDFIEDWVK 255 (347)
T ss_pred cccccccchhHHHHHH
Confidence 6555433 49999986
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=4.4e-54 Score=398.32 Aligned_cols=179 Identities=78% Similarity=1.223 Sum_probs=164.6
Q ss_pred hHHhhhhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhh
Q 026089 63 REDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSEL 140 (243)
Q Consensus 63 ~~~~~~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~L 140 (243)
.++|+++|||+||++|+|||+||++|+++|++||+++|+||++.. ..++++++++|++||++|+.+.+..++++|.+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 70 LRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 346889999999999999999999999999999999999998632 356899999999999999999998999999999
Q ss_pred hcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHH
Q 026089 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (243)
Q Consensus 141 a~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~ 220 (243)
++||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...++++.++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999999999998876677899999999999999999999999999999
Q ss_pred HHhccccCCCCC-chhhccccc
Q 026089 221 GLMSFTFDGNNS-TLGENWHPC 241 (243)
Q Consensus 221 Aal~~~~~g~~~-~~i~~Wl~~ 241 (243)
|+++..+++... .+|++||..
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~ 251 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKI 251 (330)
T ss_pred HHHhccccCCccchHHHHHHHH
Confidence 999876555433 499999963
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.1e-48 Score=352.92 Aligned_cols=174 Identities=63% Similarity=1.016 Sum_probs=159.3
Q ss_pred hhhhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 026089 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (243)
Q Consensus 66 ~~~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~ 145 (243)
|+.+||+++|.+|.+||+.++.+++.+++++..+++.|++.. .+|.+++++|++||++|+++++..++++|.+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 788999999999999999999999999999999999999874 6799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhcc
Q 026089 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (243)
Q Consensus 146 P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~ 225 (243)
|+++||+||||||+|+.|||.+|||+||+||+||+|+++|...++++.++||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876545678999999999999999999999999999999975
Q ss_pred ccCCC--CCchhhcccc
Q 026089 226 TFDGN--NSTLGENWHP 240 (243)
Q Consensus 226 ~~~g~--~~~~i~~Wl~ 240 (243)
.+... ..++|..|+.
T Consensus 160 ~~~~~~~~~~~l~~wl~ 176 (258)
T PLN00416 160 EDDAAPTQSDFIENWVK 176 (258)
T ss_pred cccccccccchHHHHHH
Confidence 32211 2248999985
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=2.2e-45 Score=337.34 Aligned_cols=156 Identities=42% Similarity=0.768 Sum_probs=142.3
Q ss_pred hhcCchhHHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 026089 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (243)
Q Consensus 84 ~~~~l~~~a~~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe 161 (243)
+..+|..+|++|++++|+||++.. ...+++++++|++||.+|+..++..++++|.+|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999998644 345899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 162 ~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
.|||++|||+||+||+||+|+|+|... .++.++|||||.+|+|++|||||||+||||+|+++..+++...++|++|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHH
Confidence 999999999999999999999987532 578999999999999999999999999999999987766654459999995
No 5
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-38 Score=276.43 Aligned_cols=122 Identities=38% Similarity=0.658 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccch
Q 026089 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (243)
Q Consensus 113 ~~l~~Ll~GN~~F~~~~~~~~p~~~~~La-~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~ 191 (243)
..++.|++||++|.++.+...+.+|..++ .+|+|+++||+||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888888888876 56999999999999999999999999999999999999999875 36
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
+++||||||.+|||++|||||||+|||++|++.....+.. ++.+|+.
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~--~i~~wl~ 124 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK--PIPGWLL 124 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc--ccchhhh
Confidence 9999999999999999999999999999999987655433 6888873
No 6
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-39 Score=290.30 Aligned_cols=189 Identities=43% Similarity=0.679 Sum_probs=178.4
Q ss_pred CcccCCccccCCCCccCcchhHHhhhhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 026089 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (243)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~~~~p~~~l~~Ll~GN 122 (243)
.|+|+.+.|..+.+...+....||.+.+|+.++..+.++|..+.++ ++++++++++++ ++++++++++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999888888999999999999999999999999 899999999983 67899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHh
Q 026089 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (243)
Q Consensus 123 ~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~ 202 (243)
..|.++++.++|.+|..++++|+|+.++|+|+||||+|++|++++|||+|++||++|+|+|+|..++.++.++|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred cCCceEEEecCCCchHHHHHhccccCCCCCchhhcccccC
Q 026089 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHPCQ 242 (243)
Q Consensus 203 L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~~~ 242 (243)
|+|++|+||||++|||++++|....++...+|+.+|+.+.
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~~~~f~~~wv~id 190 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAPSRSFIENWVYID 190 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCcchhhhhhheeeC
Confidence 9999999999999999999999988877445999999763
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-37 Score=269.25 Aligned_cols=120 Identities=49% Similarity=0.826 Sum_probs=106.7
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCc-ccchhHHHHHHH
Q 026089 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (243)
Q Consensus 121 GN~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~-~~~~v~aSLEyA 199 (243)
||++|++..+..++++|++|++||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.. .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987542 245789999999
Q ss_pred HHhcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 200 V~~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
|.+|+|++|||||||+||||+|+++........++++.||.
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~~~~~~~~l~~wl~ 121 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDLLDKLPFIGKWLR 121 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhccccccCCcchHHHHHH
Confidence 99999999999999999999999975431222348999985
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.1e-37 Score=273.08 Aligned_cols=119 Identities=33% Similarity=0.581 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhH
Q 026089 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (243)
Q Consensus 114 ~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~ 193 (243)
.+++|++||++|++..+..++++|++++++|+|+++||+||||||+|+.+||.+|||+||+||+||+|+++|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5889999999999998888999999999999999999999999999999999999999999999999998764 478
Q ss_pred HHHHHHHHhcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 194 aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
++|||||.+|+|++|||||||+||+|+|+++... ..+|+.|+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~----~~~i~~wl~ 121 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE----LGLINNWLL 121 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC----cccHHHHHH
Confidence 9999999999999999999999999999996421 248999985
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.1e-37 Score=265.70 Aligned_cols=111 Identities=42% Similarity=0.718 Sum_probs=101.5
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHH
Q 026089 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (243)
Q Consensus 122 N~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~ 201 (243)
|++|++.++..+|++|.+++.+|+|+++||+||||||+|+.|||.+|||+||+||+||+|+++|. ++.++|||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998764 58899999999
Q ss_pred hcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 202 ~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
+|||++|||||||+|||++|+++.. ..+++..|+.
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~----~~~~~~~wl~ 111 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK----RLGLLDNWLR 111 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC----CCccHHHHHH
Confidence 9999999999999999999999653 2247888874
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.6e-37 Score=276.37 Aligned_cols=121 Identities=26% Similarity=0.356 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCC
Q 026089 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (243)
Q Consensus 108 ~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~---~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~ 184 (243)
..+|.+.+++|++||++|+++.+. .++++ .++++||+|+++||+|+||||+||.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 478999999999999999998865 34333 2457899999999999999999999999999999999999999964
Q ss_pred CCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhccccCCCCCchhhcccc
Q 026089 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTLGENWHP 240 (243)
Q Consensus 185 d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~g~~~~~i~~Wl~ 240 (243)
++.++|||||.+|+|++|||||||+||+|+|+++... ..+|..||.
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~----~g~l~~wl~ 173 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE----LGNLTGLLD 173 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC----cchHHHHHH
Confidence 3678999999999999999999999999999997532 237889985
No 11
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=7.4e-37 Score=279.77 Aligned_cols=131 Identities=48% Similarity=0.831 Sum_probs=117.2
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcc
Q 026089 109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK 188 (243)
Q Consensus 109 ~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~ 188 (243)
.+..+.+++|++||++|+..++..+++.|++|+.||+|+++||+|+||||+|+.|||.+|||+||+||+||+|++++..
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g- 148 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG- 148 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred cchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhccccC-CCCCchhhcccc
Q 026089 189 YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFD-GNNSTLGENWHP 240 (243)
Q Consensus 189 ~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~-g~~~~~i~~Wl~ 240 (243)
+.++.++|||||.+|+|++|||||||+||||+|+++.... +...++|++|+.
T Consensus 149 ~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~ 201 (290)
T PLN02154 149 PTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVM 201 (290)
T ss_pred ccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHH
Confidence 3578999999999999999999999999999999975322 333459999985
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.6e-34 Score=241.45 Aligned_cols=105 Identities=42% Similarity=0.603 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCc
Q 026089 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (243)
Q Consensus 111 p~~~l~~Ll~GN~~F~~~~~~~---~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~ 187 (243)
|..++++|++||++|++.+... +++.|.+++++|+|+++||+|||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5678999999999999875431 255688999999999999999999999999999999999999999999975
Q ss_pred ccchhHHHHHHHHHhcCCceEEEecCCCchHHHHH
Q 026089 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (243)
Q Consensus 188 ~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aa 222 (243)
++.++||||+..|||++|||||||+||+++++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 37899999999999999999999999999987
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.96 E-value=4e-29 Score=201.51 Aligned_cols=76 Identities=51% Similarity=0.921 Sum_probs=71.5
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHh
Q 026089 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 144 Q~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal 223 (243)
|+|+++||+|||||++|+.+||++|||+||+||+||+|++.+ .+++++||||+..||+++|+|||||+||++++..
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a~~ 76 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKALV 76 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHHHH
Confidence 789999999999999999999999999999999999999764 3689999999999999999999999999999743
No 14
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.96 E-value=2.1e-29 Score=207.38 Aligned_cols=86 Identities=42% Similarity=0.763 Sum_probs=70.7
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhcccc
Q 026089 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (243)
Q Consensus 148 ~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~ 227 (243)
++||+|||||++|+.+||.+|||+||+||+||+|++.+ .+++++||||+.+||+++|||||||+||++++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998764 46899999999999999999999999999999886322
Q ss_pred CCCCCchhhcccc
Q 026089 228 DGNNSTLGENWHP 240 (243)
Q Consensus 228 ~g~~~~~i~~Wl~ 240 (243)
...++.+|+.
T Consensus 77 ---~~~~l~~~l~ 86 (153)
T PF00484_consen 77 ---EDGFLRDWLQ 86 (153)
T ss_dssp ---TCSHHHHHHH
T ss_pred ---ccchHHHHHH
Confidence 2348889985
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=3.2e-27 Score=195.25 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=69.9
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHh
Q 026089 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 144 Q~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal 223 (243)
+.++++||+|||||++|+.+||.+|||+||+||+||+|++ +++++|+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999985 378899999999999999999999999999886
Q ss_pred cc
Q 026089 224 SF 225 (243)
Q Consensus 224 ~~ 225 (243)
+.
T Consensus 74 ~~ 75 (142)
T cd03379 74 EE 75 (142)
T ss_pred HH
Confidence 53
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.7e-08 Score=92.62 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEeccccC
Q 026089 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (243)
Q Consensus 118 Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~I----------------fg~~pGEaFVvRNaGN~V 181 (243)
|+.|..+|+...... +-.++..-++|.+..++|+|+|.-|... +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677788888765432 2256777789999999999999999876 667899999999999999
Q ss_pred CCCCCc-----ccchhHHHHHHHHHhcCCceEEEecCCCchHHHHHhccccC------CCCCchhhccccc
Q 026089 182 PPYDQT-----KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFD------GNNSTLGENWHPC 241 (243)
Q Consensus 182 ~p~d~~-----~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~~~~------g~~~~~i~~Wl~~ 241 (243)
+....- ..+--.++|+.|+......||++|||.+|-+++........ .+....++.||.+
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 853210 00111246788888888999999999999999988876541 1222478888754
No 17
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=58.13 E-value=36 Score=28.30 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=35.0
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcC
Q 026089 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (243)
Q Consensus 130 ~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~ 204 (243)
..-+|.+|.+..-.+-| ++|+.|.+..+..+.. ..+++-.++. ||+ +|+||++.+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v~--Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVVY--GNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEEE--ecc--------------cHHHHHHHHH
Confidence 34589999988766677 6788888875554322 3444443333 554 5777776654
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=53.98 E-value=6.9 Score=23.51 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.9
Q ss_pred CCCcccCCccccCCCCcc
Q 026089 41 PPSLIRNEPVFAAPAPII 58 (243)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (243)
.|..++-+||+.||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 567778888888888864
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=46.30 E-value=1.4e+02 Score=24.61 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=64.9
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHH
Q 026089 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (243)
Q Consensus 140 La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai 219 (243)
+..|..|.+.||-+=--|-....... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999999888887765444 55678999999999974 46678999987767779999999999999
Q ss_pred HHHhcccc
Q 026089 220 KGLMSFTF 227 (243)
Q Consensus 220 ~Aal~~~~ 227 (243)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 98887654
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=36.49 E-value=28 Score=28.80 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHh-----cCCceEEEecCCCchHHHHHhc
Q 026089 191 GVGAAVEYAVLH-----LKVSNIVVIGHSACGGIKGLMS 224 (243)
Q Consensus 191 ~v~aSLEyAV~~-----L~V~~IVViGHSdCGai~Aal~ 224 (243)
.+.+++++...+ ...+.|+|+|||.-|.+.+.+.
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 577889998888 6678999999999998887654
No 21
>PRK11440 putative hydrolase; Provisional
Probab=35.82 E-value=74 Score=26.79 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=33.6
Q ss_pred cCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCC-chHHHHHhccc
Q 026089 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSA-CGGIKGLMSFT 226 (243)
Q Consensus 164 fg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSd-CGai~Aal~~~ 226 (243)
+...+||.++.++--+-.... .|+.-+...|+++|||+|=+- +.....+....
T Consensus 90 l~~~~~d~vi~K~~~saF~~T----------~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~ 143 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT----------DLELQLRRRGIDTIVLCGISTNIGVESTARNAW 143 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC----------CHHHHHHHCCCCEEEEeeechhHHHHHHHHHHH
Confidence 456788987777654443221 255556789999999999544 44444555443
No 22
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=33.70 E-value=54 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCchHHHHHhc
Q 026089 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (243)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~ 224 (243)
....+...+..++.+.++|+|||--|.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 334455556788999999999999998886553
No 23
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=31.23 E-value=59 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCchHHHHHh
Q 026089 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal 223 (243)
....|...+..++.+.++++|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 34566777889999999999999877766544
No 24
>PRK03592 haloalkane dehalogenase; Provisional
Probab=30.74 E-value=55 Score=28.62 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCceEEEecCCCchHHHHHhcc
Q 026089 193 GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (243)
Q Consensus 193 ~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~ 225 (243)
...+.-.+..|+.+.++|+|||--|.+...+..
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 345555677899999999999999999876543
No 25
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=29.72 E-value=57 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHhcCCceEEEecCCCchHHHHHh
Q 026089 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal 223 (243)
....+.+++-...++++.|.++|||-=|.+...+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~ 61 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLALEY 61 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHH
Confidence 4577889999999999999999999844444433
No 26
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.65 E-value=1e+02 Score=23.33 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.3
Q ss_pred hhhhcHHHHHHHHHHHhh
Q 026089 66 MANQSYEEAIEALKKLLK 83 (243)
Q Consensus 66 ~~~~s~~~a~~~l~~~l~ 83 (243)
|...+||+|+.+|..+++
T Consensus 1 m~~~~fEeal~~LE~IV~ 18 (75)
T PRK14066 1 MAVEKFETALKKLEEVVK 18 (75)
T ss_pred CccccHHHHHHHHHHHHH
Confidence 667789999998877754
No 27
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=27.61 E-value=87 Score=30.34 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=31.1
Q ss_pred hhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCC
Q 026089 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS 214 (243)
Q Consensus 161 e~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHS 214 (243)
.++-++++|| .||.|.||-. |..++---+..+|.+.|=|+-.-
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRdR 195 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRDR 195 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeecC
Confidence 4688999999 8999999954 33333333578899888777543
No 28
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=27.51 E-value=71 Score=28.34 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhc-CCceEEEecCCCchHHHHHh
Q 026089 191 GVGAAVEYAVLHL-KVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 191 ~v~aSLEyAV~~L-~V~~IVViGHSdCGai~Aal 223 (243)
.+.+++++....+ +.+.|+++|||- ||.-+++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 3556666544443 678899999998 5555544
No 29
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=27.16 E-value=70 Score=27.95 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCceEEEecCCCchHHHHHhc
Q 026089 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (243)
Q Consensus 194 aSLEyAV~~L~V~~IVViGHSdCGai~Aal~ 224 (243)
..+.-.+..++.+.++++|||--|.+...+.
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 3444456678899999999999998886554
No 30
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.28 E-value=54 Score=30.37 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=14.2
Q ss_pred hcHHHHHHHHHHHhhhhc
Q 026089 69 QSYEEAIEALKKLLKEKE 86 (243)
Q Consensus 69 ~s~~~a~~~l~~~l~~~~ 86 (243)
+-||+|++++|++|+--.
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 558999999999986443
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.55 E-value=40 Score=31.16 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=14.0
Q ss_pred CceEEEecCCCchHHHH
Q 026089 205 VSNIVVIGHSACGGIKG 221 (243)
Q Consensus 205 V~~IVViGHSdCGai~A 221 (243)
=+-|-|+|||+||=-+.
T Consensus 29 GEfvsilGpSGcGKSTL 45 (248)
T COG1116 29 GEFVAILGPSGCGKSTL 45 (248)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 36899999999997664
No 32
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.12 E-value=1.4e+02 Score=26.09 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=31.6
Q ss_pred hhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHH
Q 026089 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHF 125 (243)
Q Consensus 68 ~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~~~~p~~~l~~Ll~GN~~F 125 (243)
.|||..+++.-|+++=|..+|. +|...++.|.+-+++.. +.....|-++|+.|...
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~ 160 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEE 160 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665 35555665555555432 33344556666655443
No 33
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.73 E-value=91 Score=28.45 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=41.1
Q ss_pred cccCCCCccCcchhHHhhhhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcCCCC--CChHHHHHHHHHHHHHH
Q 026089 50 VFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD--TKAFDSVERIKEGFIHF 125 (243)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~~~~--~~p~~~l~~Ll~GN~~F 125 (243)
+++||+|+ .|....|.++-+..|..++.........-..+++.+.+|+...+. ..-..-++.++++.+.+
T Consensus 23 ~~~a~a~v------~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 23 AAFAQAPI------SSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHhcCCcH------HHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56789998 355567778888888777766554433345666666666644221 11122355666655443
No 34
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.97 E-value=96 Score=23.95 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCceEEEecCCCchHHHHHhcc
Q 026089 191 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (243)
Q Consensus 191 ~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal~~ 225 (243)
.+...|.-.+...+-..|+|.|||-=|++..++..
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 83 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAA 83 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHH
Confidence 34455555666666689999999999998876543
No 35
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=23.52 E-value=1.9e+02 Score=27.28 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=34.8
Q ss_pred hcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCC
Q 026089 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS 214 (243)
Q Consensus 141 a~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHS 214 (243)
+..+.|+++|-|- |=|-+.+..+.--=-+|+=|+-++--.. -+...|--|+...++..+||+|-.
T Consensus 78 ag~~dPKimvTTS---R~PSsrL~~FaKelkLvfPNaqr~nRG~------~~~~~lv~a~ra~~~Td~iivHEh 142 (290)
T KOG2781|consen 78 AGEEDPKIMVTTS---RDPSSRLKMFAKELKLVFPNAQRLNRGN------YVVGELVDAARANGVTDLIIVHEH 142 (290)
T ss_pred ccCCCCcEEEEeC---CCchHHHHHHHHhheEeccChhhhcccc------eeHHHHHHHHHHCCCceEEEEecc
Confidence 5568999887764 4333333333322233444443332211 122356567788898888777543
No 36
>PHA00425 DNA packaging protein, small subunit
Probab=22.78 E-value=1.5e+02 Score=23.35 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=31.4
Q ss_pred HhHhhHHHHHhhcCCCCCCh--HHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 026089 92 AAAKVEQITAQLQTPSDTKA--FDSVERIKEGFIHFKREKYEKNPALYSELA 141 (243)
Q Consensus 92 a~~~v~~~~~el~~~~~~~p--~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La 141 (243)
.++.-..+-++|+.....+| +.++.++++++ +|.-.+...+......|+
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RH-kF~isKl~pD~~iLg~la 64 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRH-KFQISKLQPDENILGGLA 64 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHh-cccccccCCcHHHHHHHH
Confidence 34555677788876443444 67899999986 576666655555554444
No 37
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=22.69 E-value=1.1e+02 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=23.1
Q ss_pred cccccccccccccCC--CCceeEEeccCCCCCCCcccCCccccCCCCccCcchhHHhh
Q 026089 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (243)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (243)
+..+.+-|-+||.+. ++.-- .--|=||+|.|- .+.|.+-|-|.
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~ 50 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALM 50 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHH
Confidence 334455577888543 32222 234558999987 33444434444
No 38
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=22.51 E-value=2.3e+02 Score=22.91 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=34.6
Q ss_pred CCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCCCchHHH-HHhcccc
Q 026089 168 PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK-GLMSFTF 227 (243)
Q Consensus 168 pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHSdCGai~-Aal~~~~ 227 (243)
+||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|. +++...+
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~ 135 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLATARDAFD 135 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEehhHHHHHH
Confidence 49999999866666332 25555778999999999976555555 4554443
No 39
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=22.50 E-value=3.6e+02 Score=20.67 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhhcCchhHHhHhhHHHHHhhcC------CCCCChHHHHHHHHHHHHHHHhhhc
Q 026089 73 EAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT------PSDTKAFDSVERIKEGFIHFKREKY 130 (243)
Q Consensus 73 ~a~~~l~~~l~~~~~l~~~a~~~v~~~~~el~~------~~~~~p~~~l~~Ll~GN~~F~~~~~ 130 (243)
+-++.|+..|++...++..-.+.+..+..+++. ..........+++-.--.+|...|+
T Consensus 4 ~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP 67 (85)
T PF14357_consen 4 ELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHP 67 (85)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCC
Confidence 557788888988888888888888877777764 1112223345777777777877764
No 40
>PRK10566 esterase; Provisional
Probab=22.39 E-value=1.1e+02 Score=25.91 Aligned_cols=28 Identities=18% Similarity=-0.061 Sum_probs=17.1
Q ss_pred HHHHHHHHh--cCCceEEEecCCCchHHHH
Q 026089 194 AAVEYAVLH--LKVSNIVVIGHSACGGIKG 221 (243)
Q Consensus 194 aSLEyAV~~--L~V~~IVViGHSdCGai~A 221 (243)
..+++.... +..+.|+|+|||-=|.+..
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al 122 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASMGGMTAL 122 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecccHHHHH
Confidence 344444333 3347899999999444443
No 41
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=22.28 E-value=1.6e+02 Score=24.51 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEecCC-CchHHHHHhccc
Q 026089 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS-ACGGIKGLMSFT 226 (243)
Q Consensus 165 g~~pGEaFVvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViGHS-dCGai~Aal~~~ 226 (243)
.-.+||..+.++.=+-.. + ..|+.-+...|+++|||+|=. +|.....+.+..
T Consensus 84 ~~~~~~~v~~K~~~saF~--------~--t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~ 136 (179)
T cd01015 84 APQEDEMVLVKKYASAFF--------G--TSLAATLTARGVDTLIVAGCSTSGCIRATAVDAM 136 (179)
T ss_pred CCCCCCEEEecCccCCcc--------C--CcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHH
Confidence 445788766665322221 1 146667789999999999954 555555555543
No 42
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.93 E-value=59 Score=27.07 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=16.0
Q ss_pred cCCceEEEecCCCchHHHHH
Q 026089 203 LKVSNIVVIGHSACGGIKGL 222 (243)
Q Consensus 203 L~V~~IVViGHSdCGai~Aa 222 (243)
-++..|+|+||.+||=-.-+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl 58 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLF 58 (204)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 34679999999999976644
No 43
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=21.84 E-value=1.1e+02 Score=27.82 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=29.8
Q ss_pred cCCCCccCcchhHHhhhhcHHHHHHHHHHHhhhhcCchhHHhHhhHHHH--HhhcCCCCCChHHHHHHHHHHHHHHHh
Q 026089 52 AAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQIT--AQLQTPSDTKAFDSVERIKEGFIHFKR 127 (243)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~l~~~~~l~~~a~~~v~~~~--~el~~~~~~~p~~~l~~Ll~GN~~F~~ 127 (243)
..-.|+-.|.|- ..+..--+++...++.|= ++|.. |+.|.--+. .+..+....+|...+++|.+++++|..
T Consensus 84 ~~~fP~~~P~WD--~Nt~~g~~~L~~yrq~LL--~GLr~-aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp 156 (211)
T PF02093_consen 84 EEQFPSTDPNWD--PNTAEGREALRLYRQCLL--AGLRG-AARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTP 156 (211)
T ss_dssp HHHS-SS-------TTSHHHHHHHHHHHHHHH--HHHHH-HHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS-
T ss_pred HhhCCCCCCCCC--CCcHHHHHHHHHHHHHHH--HHHHh-cCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Confidence 345678789883 332233344443333221 22322 333311111 122122236788999999999998765
No 44
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.00 E-value=1.3e+02 Score=24.29 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=23.9
Q ss_pred cCCCCCceE-EEEeccccCCCCCCcccchhHHHHHHHHHhcCCceEEEec
Q 026089 164 LDFQPGEAF-VVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIG 212 (243)
Q Consensus 164 fg~~pGEaF-VvRNaGN~V~p~d~~~~~~v~aSLEyAV~~L~V~~IVViG 212 (243)
.+.+|||++ ++-+-||-- .+..++++| ...|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~---------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP---------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH---------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH---------HHHHHHHHH-HHCCCEEEEEeC
Confidence 457999977 556667652 367788887 678888887765
No 45
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.84 E-value=97 Score=27.70 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHhcCCceEEEecCCCchHHHHHh
Q 026089 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (243)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVViGHSdCGai~Aal 223 (243)
.++.+-||||.+.|+++.|+||=|-+=---.+++
T Consensus 119 e~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~Ll 152 (191)
T KOG4387|consen 119 EGLVALLEFAEEKLHVDKVFICFDKNREDRAALL 152 (191)
T ss_pred HhHHHHHHHHHHhhccceEEEEEecCccChHhhh
Confidence 4788899999999999999999765543333333
No 46
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=20.49 E-value=1.7e+02 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=28.8
Q ss_pred HhHhhHHHHHhhcCCCCCCh--HHHHHHHHHHHHHHHhhhccCChhhHHhh
Q 026089 92 AAAKVEQITAQLQTPSDTKA--FDSVERIKEGFIHFKREKYEKNPALYSEL 140 (243)
Q Consensus 92 a~~~v~~~~~el~~~~~~~p--~~~l~~Ll~GN~~F~~~~~~~~p~~~~~L 140 (243)
.++--..|-++|+.....+| +.++.++++++ +|+-.+...+.....+|
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH-kF~iskl~pd~~~LG~L 61 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH-KFQISKLQPDENILGEL 61 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc-cchhhhcCccHHHHHHH
Confidence 34555667777875443444 67888888887 56655554444444444
No 47
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.10 E-value=1.5e+02 Score=23.68 Aligned_cols=31 Identities=26% Similarity=0.162 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCchHHHHH
Q 026089 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (243)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHSdCGai~Aa 222 (243)
....+...+..++.+.|+|+|||-=|.+...
T Consensus 65 ~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~ 95 (251)
T TIGR02427 65 LADDVLALLDHLGIERAVFCGLSLGGLIAQG 95 (251)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCchHHHHHH
Confidence 4456677788889999999999998877543
No 48
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=20.07 E-value=96 Score=31.77 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.6
Q ss_pred CCceEEEecCCCchHHHHH
Q 026089 204 KVSNIVVIGHSACGGIKGL 222 (243)
Q Consensus 204 ~V~~IVViGHSdCGai~Aa 222 (243)
+-+.|+|+||+||-|+.+.
T Consensus 68 ~~e~I~I~gDyD~DGitst 86 (575)
T PRK11070 68 EGTRIIVVGDFDADGATST 86 (575)
T ss_pred CCCEEEEEEecCccHHHHH
Confidence 4579999999999999874
Done!