BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026090
MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAAASATGSSNS
DSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRK
KGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYK
PLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSS
LDC

High Scoring Gene Products

Symbol, full name Information P value
CJD1
Chloroplast J-like domain 1 		protein from Arabidopsis thaliana 9.3e-75

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026090
        (243 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025660 - symbol:CJD1 "Chloroplast J-like doma...   754  9.3e-75   1


>TAIR|locus:2025660 [details] [associations]
            symbol:CJD1 "Chloroplast J-like domain 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0006631 "fatty
            acid metabolic process" evidence=IMP] [GO:0031969 "chloroplast
            membrane" evidence=IDA] EMBL:CP002684 GO:GO:0006631 GO:GO:0031969
            EMBL:AF370182 EMBL:AY059140 IPI:IPI00517300 RefSeq:NP_563823.1
            UniGene:At.16960 ProteinModelPortal:Q93WG3 SMR:Q93WG3 STRING:Q93WG3
            PRIDE:Q93WG3 EnsemblPlants:AT1G08640.1 GeneID:837386
            KEGG:ath:AT1G08640 TAIR:At1g08640 InParanoid:Q93WG3 OMA:WILIKRN
            PhylomeDB:Q93WG3 ProtClustDB:CLSN2687732 Genevestigator:Q93WG3
            Uniprot:Q93WG3
        Length = 294

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 155/242 (64%), Positives = 181/242 (74%)

Query:     1 MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRA-VSWDRSVTCAAASATGSSN 59
             MA + SN       ++SLRN + RA  S   PSFVR P   V   R V  AA+SA G+  
Sbjct:    13 MAFSTSNALRYHHPQISLRN-SLRAPKS---PSFVRLPLGKVLQSRIVIRAASSAAGNPQ 68

Query:    60 SDSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKR 119
             SD++ NPYEVLGVNPIEGFD +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  R
Sbjct:    69 SDADFNPYEVLGVNPIEGFDKIKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNR 128

Query:   120 KKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEY 179
             KKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EY
Sbjct:   129 KKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEY 188

Query:   180 KPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVS 239
             KPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+LVFG I ++
Sbjct:   189 KPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLA 248

Query:   240 SL 241
             SL
Sbjct:   249 SL 250


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       243   0.00097  113 3  11 22  0.39    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  174 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.83u 0.11s 21.94t   Elapsed:  00:00:01
  Total cpu time:  21.83u 0.11s 21.94t   Elapsed:  00:00:01
  Start:  Thu May  9 20:27:05 2013   End:  Thu May  9 20:27:06 2013

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