BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026090
         (243 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5CA18|NRDR_MICLC Transcriptional repressor NrdR OS=Micrococcus luteus (strain ATCC
           4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 /
           NCTC 2665 / VKM Ac-2230) GN=nrdR PE=3 SV=1
          Length = 164

 Score = 38.1 bits (87), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 184 FLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGR 217
           FL FA VYR FE L  FE A++     +GDD GR
Sbjct: 121 FLRFASVYRDFESLDDFEEAIAELRAGDGDDRGR 154


>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
           SV=1
          Length = 761

 Score = 32.0 bits (71), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 63  ELNPYEVLGVNPIEGFDMVKAVYA--KKRKEAERNNDEATAARLEKAYDKLMMEQLSKRK 120
           E NPYEVL ++P      +K  Y     +   ++  DE    R+ KAY  L  E+   RK
Sbjct: 102 EYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEVMFMRIAKAYAALTDEE--SRK 159

Query: 121 KGVTFGS 127
               FG+
Sbjct: 160 NWEEFGN 166


>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
           SV=2
          Length = 760

 Score = 32.0 bits (71), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 63  ELNPYEVLGVNPIEGFDMVKAVYA--KKRKEAERNNDEATAARLEKAYDKLMMEQLSKRK 120
           E NPYEVL ++P      +K  Y     +   ++  DE    R+ KAY  L  E+   RK
Sbjct: 102 EYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEVMFMRIAKAYAALTDEE--SRK 159

Query: 121 KGVTFGS 127
               FG+
Sbjct: 160 NWEEFGN 166


>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1
           SV=4
          Length = 760

 Score = 32.0 bits (71), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 63  ELNPYEVLGVNPIEGFDMVKAVYA--KKRKEAERNNDEATAARLEKAYDKLMMEQLSKRK 120
           E NPYEVL ++P      +K  Y     +   ++  DE    R+ KAY  L  E+   RK
Sbjct: 102 EYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEVMFMRIAKAYAALTDEE--SRK 159

Query: 121 KGVTFGS 127
               FG+
Sbjct: 160 NWEEFGN 166


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,158,076
Number of Sequences: 539616
Number of extensions: 3221465
Number of successful extensions: 9098
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9076
Number of HSP's gapped (non-prelim): 30
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)