BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026091
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 282 bits (722), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 131/238 (55%), Positives = 174/238 (73%), Gaps = 1/238 (0%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNA 64
KGRVCVTGGTGF+GSW+I LL++GYSV TT+R+DPE+KRD+SFLTNLP ASE+L FNA
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 65 DLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRV 124
DL+NP+SF AAI GC G+ H A+PID EPEE++ +R V G +GILK+C+ S TVKR
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRF 120
Query: 125 VYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKTXXXXXXXXXXXXHGL 184
+YTSS S V F+GKD D+LDE+ WSDVD +R + +G +Y +SKT +G+
Sbjct: 121 IYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 185 DLVTIIPSFVTGPFICPQLAGSVRGTLAMVMGNREEYSMLLNISMVHIDDVARAHIFF 242
D+VT+I F+ G F+CP+L S+ L +V+G +E+ + MVH+DDVARAHI+
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGV-TRFHMVHVDDVARAHIYL 237
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 147/242 (60%), Gaps = 1/242 (0%)
Query: 1 MEEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQ 60
M + VCVTG +GFIGSWL+MRLL+ GY+VR TVR DP + + L +LP+A L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVR-DPTNVKKVKHLLDLPKAETHLT 59
Query: 61 IFNADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGT 120
++ ADL + SFD AI GCTGV HVA P+D K+PE +I+ + G +GI+KSC + T
Sbjct: 60 LWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 121 VKRVVYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKTXXXXXXXXXXX 180
V+R+V+TSSA TV+ + + DE+ WSD+++ R + Y +SKT
Sbjct: 120 VRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 181 XHGLDLVTIIPSFVTGPFICPQLAGSVRGTLAMVMGNREEYSMLLNISMVHIDDVARAHI 240
+ +D +TIIP+ V GPFI + S+ L+ + GN YS++ VH+DD+ AHI
Sbjct: 180 ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239
Query: 241 FF 242
+
Sbjct: 240 YL 241
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 143/248 (57%), Gaps = 15/248 (6%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNA 64
K CV GGTGF+ S L+ LL GY+V TTVR DP+ ++ +S L L + L+IF A
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR-DPDNQKKVSHLLELQELGD-LKIFRA 66
Query: 65 DLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRV 124
DL + SF+A IAGC V HVA P+ ++PE +I+ A+ G + ++K+C ++ +VKRV
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRV 126
Query: 125 VYTSSASTVHFSGKDVD--MLDETFWSDVDYI--RKLDIWGKSYKLSKTXXXXXXXXXXX 180
+ TSSA+ V + D ++DE W+D++++ K WG Y SKT
Sbjct: 127 ILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAAWKFAE 184
Query: 181 XHGLDLVTIIPSFVTGPFICPQLAGSVRGTLAMVMGNR------EEYSMLL-NISMVHID 233
+ +DL+T+IP+ + G + + S+ ++++ GN + ML ++S+ H++
Sbjct: 185 ENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVE 244
Query: 234 DVARAHIF 241
DV RAHIF
Sbjct: 245 DVCRAHIF 252
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 37/257 (14%)
Query: 4 EKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPE----QKRDLSFLTNLPRASERL 59
E V VTG GF+ S ++ +LL+HGY VR T RS + QKR + P E
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETA 66
Query: 60 QIFNADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSG 119
+ D+ ++D I G GV H+A+ + K E ++ A+ GT+ L++ +
Sbjct: 67 VV--EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATP 122
Query: 120 TVKRVVYTSSASTVHFSGKDVD--MLDETFWS--DVDYIRKL-------DIWGKSYKLSK 168
+VKR V TSS + +V+ LDE W+ +D + L +W Y SK
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW--VYAASK 180
Query: 169 TXXXXXXXXXXXXHG--LDLVTIIPSFVTGPFICPQL-AGSVRGTL----------AMVM 215
T + L ++P++ G P+ +GS G + A+ +
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240
Query: 216 GNREEYSMLLNISMVHI 232
+ Y ++I ++H+
Sbjct: 241 MPPQYYVSAVDIGLLHL 257
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 4 EKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPE----QKRDLSFLTNLPRASERL 59
E V VTG GF+ S ++ +LL+HGY VR T RS + QKR + P E
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETA 66
Query: 60 QIFNADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSG 119
+ D ++D I G GV H+A+ + K E ++ A+ GT+ L++ +
Sbjct: 67 VV--EDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATP 122
Query: 120 TVKRVVYTSSASTVHFSGKDVD--MLDETFWS 149
+VKR V TSS + +V+ LDE W+
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWN 154
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKR-DLSFLTNLPRASERLQIFNADL 66
+ +TGGTG G + ++LD + + V S E K+ +++ N P R++ F D+
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDP----RMRFFIGDV 79
Query: 67 NNPESFDAAIAGCTGVIHVAA--PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRV 124
+ E + A+ G IH AA + I P E I+ + G ++ +CLK+ + +
Sbjct: 80 RDLERLNYALEGVDICIHAAALKHVPIAEYNPLEC-IKTNIMGASNVINACLKNAISQVI 138
Query: 125 VYTS--SASTVHFSGKDVDMLDETFWSDVDY 153
++ +A+ ++ G D+ F S ++
Sbjct: 139 ALSTDKAANPINLYGATKLCSDKLFVSANNF 169
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFN- 63
KG + VTGG G+IGS + LL HGY V V +D + + + + + F+
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYDV---VIADNLVNSKREAIARIEKITGKTPAFHE 61
Query: 64 ADLNNPES----FDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSG 119
D+++ + FDA T IH AA + + + R ++ L ++
Sbjct: 62 TDVSDERALARIFDA--HPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER 119
Query: 120 TVKRVVYTSSASTVHFSGKDVDMLDETF 147
VKR+V++SSA+ + + +DETF
Sbjct: 120 AVKRIVFSSSATV--YGVPERSPIDETF 145
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ VTG G +G + RL +R L+ L+ L A + DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILR------------LADLSPLDPAGPNEECVQCDL 52
Query: 67 NNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRVVY 126
+ + +A +AGC G++H+ I ++P E I+Q + G + ++ G R+V+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVF 108
Query: 127 TSSASTVHF 135
SS T+ +
Sbjct: 109 ASSNHTIGY 117
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ VTG G +G + RL +R L+ L+ L A + DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILR------------LADLSPLDPAGPNEECVQCDL 52
Query: 67 NNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRVVY 126
+ + +A +AGC G++H+ I ++P E I+Q + G + ++ G R+V+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVF 108
Query: 127 TSSASTVHF 135
SS T+ +
Sbjct: 109 ASSNHTIGY 117
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 6 GRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPR--ASERLQIFN 63
G +TG TGF+G++LI L + + + +R+D E+ +TNL + E +++
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMML 210
Query: 64 ADLN----NPESFDAAI--AGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLK 117
+++ + E D + +IH A D G + E + V GT+ +++ L
Sbjct: 211 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDE--FEKVNVQGTVDVIR--LA 266
Query: 118 SGTVKRVVYTSSAST-VHFSGKDVDMLDETF 147
R++Y S+ S +F D+D D TF
Sbjct: 267 QQHHARLIYVSTISVGTYF---DIDTEDVTF 294
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 24/137 (17%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERL-----QIF 62
+ VTGG GFIGS ++ +L + ++ + NL +E ++
Sbjct: 4 IVVTGGAGFIGSHVVDKL---------------SESNEIVVIDNLSSGNEEFVNEAARLV 48
Query: 63 NADLNNPESFDAAIAGCTGVIHVAAPIDIH-GKEPEEVIIQRAVSGTIGILKSCLKSGTV 121
ADL + D + G V H+AA D+ G E + I + V T +L++ K+G V
Sbjct: 49 KADLAADDIKD-YLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-V 106
Query: 122 KRVVYTSSASTVHFSGK 138
R+V+TS+ STV+ K
Sbjct: 107 SRIVFTST-STVYGEAK 122
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 1 MEEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQ 60
ME+++ R+ +TGG GF+GS L +L+ G+ V +KR++ E +
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI----GHENFE 56
Query: 61 IFNADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVI--IQRAVSGTIGILKSCLKS 118
+ N D+ P + + H+A+P P + I+ + TIG L
Sbjct: 57 LINHDVVEPLYIE-----VDQIYHLASP----ASPPNYMYNPIKTLKTNTIGTLNML--- 104
Query: 119 GTVKRV---VYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKT 169
G KRV + +S S V + +V E +W V+ I + + ++++T
Sbjct: 105 GLAKRVGARLLLASTSEV-YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 157
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
RV VTG TGF GSWL + L + G V+ P + L + R ++ ++ D+
Sbjct: 11 RVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPT----VPSLFEIVRLNDLMESHIGDI 66
Query: 67 NNPESFDAAIAGCTG--VIHVAA-PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKR 123
+ E ++IA V H+AA P+ E V GT+ +L++ + G +K
Sbjct: 67 RDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNIKA 126
Query: 124 VVYTSS 129
VV +S
Sbjct: 127 VVNITS 132
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 26/141 (18%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGY------SVRTTVR---SDPEQKRDLSFLTNLPRASE 57
+V VTGG G+IGS ++ LL+ GY + R S PE R + LT E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 RLQIFNAD----LNNPESFDAAI--AGCTGVIH-VAAPIDIHGKEPEEVIIQRAVSGTIG 110
+ I + L SF A I AG V V P+D + + ++GTI
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYY---------RVNLTGTIQ 114
Query: 111 ILKSCLKSGTVKRVVYTSSAS 131
+L+ +K+ VK +V++SSA+
Sbjct: 115 LLE-IMKAHGVKNLVFSSSAT 134
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 26/141 (18%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGY------SVRTTVR---SDPEQKRDLSFLTNLPRASE 57
+V VTGG G+IGS ++ LL+ GY + R S PE R + LT E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 RLQIFNAD----LNNPESFDAAI--AGCTGVIH-VAAPIDIHGKEPEEVIIQRAVSGTIG 110
+ I + L SF A I AG V V P+D + + ++GTI
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYY---------RVNLTGTIQ 114
Query: 111 ILKSCLKSGTVKRVVYTSSAS 131
+L+ +K+ VK +V++SSA+
Sbjct: 115 LLE-IMKAHGVKNLVFSSSAT 134
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ VTGG GFIGS L+ +L++ GY V V + +R+ + ++ DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV-VVVDNLSSGRREF--------VNPSAELHVRDL 52
Query: 67 NNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVI-IQRAVSGTIGILKSCLKSGTVKRVV 125
+ S+ A I G V H AA ++ E ++ V T +L+ ++G V+ VV
Sbjct: 53 KD-YSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVV 109
Query: 126 YTSSASTVH 134
+ SS STV+
Sbjct: 110 FASS-STVY 117
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 26/141 (18%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGY------SVRTTVR---SDPEQKRDLSFLTNLPRASE 57
+V VTGG G+IGS ++ LL+ GY + R S PE R + LT E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 RLQIFNAD----LNNPESFDAAI--AGCTGVIH-VAAPIDIHGKEPEEVIIQRAVSGTIG 110
+ I + L SF A I AG + V P+D + + ++GTI
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYY---------RVNLTGTIQ 114
Query: 111 ILKSCLKSGTVKRVVYTSSAS 131
+L+ +K+ VK +V++SSA+
Sbjct: 115 LLE-IMKAHGVKNLVFSSSAT 134
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
RV VTGG GFIGS ++ LL G V + + KR+ N+P+ + F DL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEV-AVLDNLATGKRE-----NVPKG---VPFFRVDL 52
Query: 67 NNPESFDAAIAG--CTGVIHVAAPIDIHGKEPEEVI-IQRAVSGTIGILKSCLKSGTVKR 123
+ E + A T V H AA + + V+ + + G + +L++C + G V++
Sbjct: 53 RDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEK 111
Query: 124 VVYTSSASTVHFSGKDVDMLDETF---------WSDVDYIRKLDIWGKSYKLS 167
+V+ S+ ++ + + +ET+ S + L ++G+SY L
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLK 164
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 6 GRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNL------PRASERL 59
G +TG TGF+G++LI L + + + +R+D E+ TNL L
Sbjct: 70 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 60 QIFNADLNNPESFDAAI--AGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLK 117
+ + E D + +IH A D G + E + V GT+ +++ L
Sbjct: 130 SNIEVIVGDFECXDDVVLPENXDTIIHAGARTDHFGDDDE--FEKVNVQGTVDVIR--LA 185
Query: 118 SGTVKRVVYTSSAST-VHFSGKDVDMLDETF 147
R++Y S+ S +F D+D D TF
Sbjct: 186 QQHHARLIYVSTISVGTYF---DIDTEDVTF 213
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 23/240 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRD-LSFLTNLPR-----ASERLQ 60
R+ VTGG GFIGS + +LL Y V +D D L++ N A RL+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYP---DVPADEVIVLDSLTYAGNRANLAPVDADPRLR 58
Query: 61 IFNADLNNPESFDAAIAGCTGVIHVAAPIDI-HGKEPEEVIIQRAVSGTIGILKSCLKSG 119
+ D+ + + G ++H AA + V + V GT +L+ + +G
Sbjct: 59 FVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 120 TVKRVVYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKTXXXXXXXXXX 179
V RVV+ S+ + V+ S +D W++ + Y SK
Sbjct: 119 -VGRVVHVST-NQVYGS------IDSGSWTESSPLEP----NSPYAASKAGSDLVARAYH 166
Query: 180 XXHGLDLVTIIPSFVTGPFICPQLAGSVRGTLAMVMGNREEYSMLLNI-SMVHIDDVARA 238
+GLD+ GP+ P+ + T + G Y N+ VH DD R
Sbjct: 167 RTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 22/173 (12%)
Query: 2 EEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQI 61
E+++ R+ +TGG GF+GS L +L G+ V +KR++ E ++
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWI----GHENFEL 79
Query: 62 FNADLNNPESFDAAIAGCTGVIHVAAPIDI--HGKEPEEVIIQRAVSGTIGILKSCLKSG 119
N D+ P + + H+A+P + P I+ + TIG L G
Sbjct: 80 INHDVVEPLYIE-----VDQIYHLASPASPPNYXYNP----IKTLKTNTIGTLNXL---G 127
Query: 120 TVKRV---VYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKT 169
KRV + +S S V + +V E +W V+ I + + ++++T
Sbjct: 128 LAKRVGARLLLASTSEV-YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 179
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ VTGG GFIGS L+ +L++ GY V V D Q RD S L + DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV---VVVDIVQ-RDTG-------GSAELHV--RDL 48
Query: 67 NNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVI-IQRAVSGTIGILKSCLKSGTVKRVV 125
+ S+ A I G V H AA ++ E ++ V T +L+ ++G V+ VV
Sbjct: 49 KD-YSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVV 105
Query: 126 YTSSASTVH 134
+ SS STV+
Sbjct: 106 FASS-STVY 113
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 23/240 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRD-LSFLTNLPR-----ASERLQ 60
R+ VTGG GFIGS + +LL Y V +D D L++ N A RL+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYP---DVPADEVIVLDSLTYAGNRANLAPVDADPRLR 58
Query: 61 IFNADLNNPESFDAAIAGCTGVIHVAAPIDI-HGKEPEEVIIQRAVSGTIGILKSCLKSG 119
+ D+ + + G ++H AA + V + V GT +L+ + +G
Sbjct: 59 FVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 120 TVKRVVYTSSASTVHFSGKDVDMLDETFWSDVDYIRKLDIWGKSYKLSKTXXXXXXXXXX 179
V RVV+ S+ V+ S +D W++ + Y SK
Sbjct: 119 -VGRVVHVST-DEVYGS------IDSGSWTESSPLEP----NSPYAASKAGSDLVARAYH 166
Query: 180 XXHGLDLVTIIPSFVTGPFICPQLAGSVRGTLAMVMGNREEYSMLLNI-SMVHIDDVARA 238
+GLD+ GP+ P+ + T + G Y N+ VH DD R
Sbjct: 167 RTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ VTG G +GS + L + VR LS + +L A +I DL
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVR------------LSDIVDLGAAEAHEEIVACDL 51
Query: 67 NNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRVVY 126
+ ++ + C G+IH+ + + P I+Q + G + ++ G R+V+
Sbjct: 52 ADAQAVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNLGK-PRIVF 107
Query: 127 TSSASTVHF 135
SS T+ +
Sbjct: 108 ASSNHTIGY 116
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 3 EEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPE-----------QKRDLSFLTN 51
E+ ++ + G +GF+GS L+ L+ G+ V VR PE +K D+S L
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRH-PEKIKIENEHLKVKKADVSSLDE 60
Query: 52 LPR----ASERLQIFNADLNNPESFDAAI 76
+ A + FN NNP+ +D I
Sbjct: 61 VCEVCKGADAVISAFNPGWNNPDIYDETI 89
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 25/127 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRAS----ERLQIFN 63
+ VTG TG +G +I LL + P + ++ + N+ +AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHLL----------KKVP-ASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKR 123
D N PES A AG + ++ ++ P + +I+Q A ++K+ +G VK
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP----HYDNTLLIVQHA-----NVVKAARDAG-VKH 101
Query: 124 VVYTSSA 130
+ YT A
Sbjct: 102 IAYTGYA 108
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 25/127 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRAS----ERLQIFN 63
+ VTG TG +G +I LL + P + ++ + N+ +AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHLL----------KKVP-ASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKR 123
D N PES A AG + ++ ++ P + +I+Q A ++K+ +G VK
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP----HYDNTLLIVQHA-----NVVKAARDAG-VKH 101
Query: 124 VVYTSSA 130
+ YT A
Sbjct: 102 IAYTGYA 108
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 7 RVCVTGGTGFIGS------------WLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPR 54
++ VTGG GFIGS W ++ + GY S+P +DL
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG------SNPANLKDLE------- 51
Query: 55 ASERLQIFNADLNNPESFDAAIAGCTGVIHVAAP--IDIHGKEPEEVIIQRAVSGTIGIL 112
R D+ + E + GV+H+AA +D P E+ + V GT +L
Sbjct: 52 DDPRYTFVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSP-EIFLHSNVIGTYTLL 110
Query: 113 KSCLKSGTVKRVVYTSS 129
+S + R V+ S+
Sbjct: 111 ESIRRENPEVRFVHVST 127
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRAS----ERLQIFN 63
+ VTG TG +G +I L + + ++ + N+ +AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHL-----------XAAVPASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKR 123
D N PES A AG + ++ ++ P + +I+Q A ++K+ +G VK
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP----HYDNTLLIVQHA-----NVVKAARDAG-VKH 101
Query: 124 VVYTSSA 130
+ YT A
Sbjct: 102 IAYTGYA 108
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRAS----ERLQIFN 63
+ VTG TG +G +I L + + ++ + N+ +AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHL-----------XAAVPASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKR 123
D N PES A AG + ++ ++ P + +I+Q A ++K+ +G VK
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP----HYDNTLLIVQHA-----NVVKAARDAG-VKH 101
Query: 124 VVYTSSA 130
+ YT A
Sbjct: 102 IAYTGYA 108
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
RV VTG TGF G WL + L G +V+ + P + L R ++ +Q D+
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP----TVPSLFETARVADGMQSEIGDI 66
Query: 67 NNPESFDAAIAGCTG--VIHVAAP--IDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVK 122
+ +I V H+AA + + EP E V GT+ +L++ G VK
Sbjct: 67 RDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVET-YSTNVMGTVYLLEAIRHVGGVK 125
Query: 123 RVVYTSS 129
VV +S
Sbjct: 126 AVVNITS 132
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADLNNP 69
+T GT +G + +LL GYSV T SD + ERLQ AD+
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMK--ETYKDVEERLQFVQADVTKK 69
Query: 70 ESF 72
E
Sbjct: 70 EDL 72
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIF-NAD 65
RV VTGG+G+IGS ++LL +G+ V + D S L + R + F D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV---IILDNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 LNNPESFDAAI---AGCTGVIHVAA--PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGT 120
+ N E+ I VIH A + ++P E V+GT+ ++ S +++
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLE-YYDNNVNGTLRLI-SAMRAAN 115
Query: 121 VKRVVYTSSAS 131
VK +++SSA+
Sbjct: 116 VKNFIFSSSAT 126
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIF-NAD 65
RV VTGG+G+IGS ++LL +G+ V + D S L + R + F D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV---IILDNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 LNNPESFDAAI---AGCTGVIHVAA--PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGT 120
+ N E+ I VIH A + ++P E V+GT+ ++ S +++
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLE-YYDNNVNGTLRLI-SAMRAAN 115
Query: 121 VKRVVYTSSAS 131
VK +++SSA+
Sbjct: 116 VKNFIFSSSAT 126
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIF-NAD 65
RV VTGG+G+IGS ++LL +G+ V + D S L + R + F D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV---IILDNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 LNNPESFDAAI---AGCTGVIHVAA--PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGT 120
+ N E+ I VIH A + ++P E V+GT+ ++ S +++
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLE-YYDNNVNGTLRLI-SAMRAAN 115
Query: 121 VKRVVYTSSAS 131
VK +++SSA+
Sbjct: 116 VKNFIFSSSAT 126
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSV 32
RV VTGG+G+IGS ++LL +G+ V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIF-NAD 65
RV VTGG+G+IGS ++LL +G+ V + D S L + R + F D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV---IILDNLCNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 LNNPESFDAAI---AGCTGVIHVAA--PIDIHGKEPEEVIIQRAVSGTIGILKSCLKSGT 120
+ N E+ I VIH A + ++P E V+GT+ ++ S +++
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLE-YYDNNVNGTLRLI-SAMRAAN 115
Query: 121 VKRVVYTSSAS 131
VK +++SSA+
Sbjct: 116 VKNFIFSSSAT 126
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADLN 67
+ + GG G+IGS + +L+D G SV + ++ R + F D+
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 68 NPESFDAAIAGCTGVIHVAAP--IDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRVV 125
E+ +A V+H AA + + ++P + V G + +L+ + V + +
Sbjct: 64 TQENIEA-------VMHFAADSLVGVSMEKPLQ-YYNNNVYGALCLLE-VMDEFKVDKFI 114
Query: 126 YTSSASTVHFSGKDVDMLDE 145
++S+A+T + DVD++ E
Sbjct: 115 FSSTAAT--YGEVDVDLITE 132
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGY 30
V VTGG G+IGS ++ L+++GY
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGY 36
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
+ VTGG GFIGS + + ++ V TV + + L + +R+++ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI--LGDRVELVVGDI 63
Query: 67 NNPESFDAAIAGCTGVIHVAA 87
+ E D A ++H AA
Sbjct: 64 ADAELVDKLAAKADAIVHYAA 84
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKR---DLSFLTNLPRASERLQIFN 63
RV V GGTGFIG+ L L G+ V T V P R D + LP + +
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEV-TLVSRKPGPGRITWDELAASGLPSCDAAVNLAG 60
Query: 64 ADLNNP-----ESFDAAIAGC 79
++ NP E+F + G
Sbjct: 61 ENILNPLRRWNETFQKEVLGS 81
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNA 64
KGRV + G TGFIG ++ LD R PR+ + +IF A
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG-------------PRSPSKAKIFKA 56
Query: 65 DLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSG-----TIGILKSCLKSG 119
D G+I+ ++ KE E I+ V G I ++K+ G
Sbjct: 57 ------LEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVG 110
Query: 120 TVKR 123
T+KR
Sbjct: 111 TIKR 114
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1 MEEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTT 35
+ E+G V VTG TG +GS + L GY+V +
Sbjct: 146 LTPERGPVLVTGATGGVGSLAVSXLAKRGYTVEAS 180
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHG 29
V V GG GF+GS L+ RLL+ G
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELG 56
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 32/128 (25%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNA 64
+ R+ + G TG+IG + LD G+ VR SE+ Q+
Sbjct: 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSN-----------SEKAQLL-- 50
Query: 65 DLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIG---------ILKSC 115
ESF A+ A ++H ID H E V V T+G I+K+
Sbjct: 51 -----ESFKASGA---NIVH--GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAI 100
Query: 116 LKSGTVKR 123
+ GTVKR
Sbjct: 101 KEVGTVKR 108
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLL-----DHGYSVRTTVRSDPEQKRDL--SFLTNLPR------ 54
V +TG TGF+G +L++ LL D SD + +R L +F + P
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 55 --ASERLQIFNADLNNPE 70
A++RL++ D + P+
Sbjct: 136 ELAADRLEVVAGDKSEPD 153
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHG 29
++ VTGGTGF+G +++ + + G
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDG 26
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNL--PRASERLQIFNADLN 67
+TG GFIGS L+ LL V +R+L + +L + + D+
Sbjct: 32 ITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR 91
Query: 68 NPESFDAAIAGCTGVIHVAAPIDIHGKEPEEV---IIQRA--VSGTIGILKSCLKSGTVK 122
N + + A AG V+H AA G P + I A + G + +L + + V+
Sbjct: 92 NLDDCNNACAGVDYVLHQAA----LGSVPRSINDPITSNATNIDGFLNMLIAA-RDAKVQ 146
Query: 123 RVVYTSSAST 132
Y +S+ST
Sbjct: 147 SFTYAASSST 156
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 95 EPEEVIIQRAVSGTIGILKSCLKSGTVKRVVYTSSASTVHFS 136
E EE+I + G+I I C K VVYT S + H +
Sbjct: 208 ECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHIT 249
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 7 RVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQIFNADL 66
R+ +TGG G +GS LI L G+ + + + KR++ LP + L + +
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEI-LVIDNFATGKREV-----LPPVA-GLSVIEGSV 74
Query: 67 NNPESFDAAIAG--CTGVIHVAAPIDIHGKEPEEVIIQRA--VSGTIGILKSCLKSGTVK 122
+ + A T V+H AA K+P++ A V G+I + K+ K+G VK
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAY----KDPDDWAEDAATNVQGSINVAKAASKAG-VK 129
Query: 123 RVVYTSSA 130
R++ +A
Sbjct: 130 RLLNFQTA 137
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 KGRVCVTGGTGFIGSWLIMRLLDHGYSV 32
K R+ +TGG GFIG L L+ G V
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEV 34
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 52 LPRASERLQIFNADLNNPESFDAAIAGCTGVIHVAAPIDIHGKEPEEVIIQRAVSGTIGI 111
+PR S L I DL+ A + G + +D+H P EV A+ G G
Sbjct: 14 VPRGSHMLSI--KDLHVSVEDKAILRGLS--------LDVH---PGEV---HAIMGPNGS 57
Query: 112 LKSCLKSGTVKRVVYTSSASTVHFSGKDV 140
KS L + R Y + TV F GKD+
Sbjct: 58 GKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved
Domain(Ecd)
Length = 210
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 1 MEEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSF-LTNL 52
M+ EKG++ TGG+G GS YS++T S+ + + L F LTNL
Sbjct: 156 MDVEKGKIEDTGGSG--GS----------YSIKTQFNSEEQWTKALKFMLTNL 196
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHG 29
+ VTGG GFIGS ++ L D G
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKG 70
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHG 29
+ VTGG GFIGS ++ L D G
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKG 23
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 2 EEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERL-- 59
E E + +TGG GF+GS L ++ + V + + + F N P +
Sbjct: 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLD--KFRSNTLFSNNRPSSLGHFKN 64
Query: 60 ------QIFNADLNNP 69
++ AD+NNP
Sbjct: 65 LIGFKGEVIAADINNP 80
>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|B Chain B, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|C Chain C, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|D Chain D, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
Length = 250
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 1 MEEEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSDPEQKRDLSFLTNLPRASERLQ 60
+E++KG +TG + IG+ + L GY V RS NL + + +
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK----------QNLEKVHDEIX 52
Query: 61 IFNADLNNPESFDAAIAGCT 80
N + P I CT
Sbjct: 53 RSNKHVQEPIVLPLDITDCT 72
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 89 IDIHGKEPEEVIIQRAVSGTIGILKSCLKSGTVKRVVYTSSASTVHFSGKDV 140
+D+H P EV A+ G G KS L + R Y + TV F GKD+
Sbjct: 22 LDVH---PGEV---HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 3 EEKGRVCVTGGTGFIGSWLIMRLLDHGYSVRTTVRSD 39
++K RV + GGTG+IG ++ + G+ R +
Sbjct: 2 DKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,929,218
Number of Sequences: 62578
Number of extensions: 257631
Number of successful extensions: 873
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 78
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)