BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026092
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGL 235
E C +C +K D PC+H +H +C+ KWL + KV L
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWL 227
SG C +C+ Y G+ +LPC H++H CI WL
Sbjct: 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL 49
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 195 RCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK 231
+C IC + G+ +LPC H++H C+ +WL NK
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK 52
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWL 227
C IC +Y +GD +LPC H +H C++ WL
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLA 236
CV+C ++ LPC H +H++C+ KWL N+ +
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPIC 66
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG 228
G C +C + + G+ LP C H +H+EC+ WLG
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG 41
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN 230
ERC IC + M LPC H + CIT+W+ N
Sbjct: 5 AERCPICLED--PSNYSMALPCLHAFCYVCITRWIRQN 40
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In
Complex With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In
Complex With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of
Alanyl- Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of
Alanyl-Trna Synthetase In Complex With L-Serine
Length = 465
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 19 AYTVTESFMDFFEGLTHAPVNYAQTGPIHDQENVYWSMNMHPYKFGFSGPESNYY 73
A+ + E F+ FFE H V A P +D ++ + M P+K F G E Y
Sbjct: 5 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY 59
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of
Alanyl-Trna Synthetase In Complex With L-Serine:
Re-Refined
Length = 464
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 19 AYTVTESFMDFFEGLTHAPVNYAQTGPIHDQENVYWSMNMHPYKFGFSGPESNYY 73
A+ + E F+ FFE H V A P +D ++ + M P+K F G E Y
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKW 226
E C IC G + LPC H + +CI KW
Sbjct: 16 EECCICM----DGRADLILPCAHSFCQKCIDKW 44
>pdb|3KXS|F Chain F, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|E Chain E, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|C Chain C, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|D Chain D, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|A Chain A, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
pdb|3KXS|B Chain B, Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form),
Strain Adyw
Length = 143
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 104 PSTTDVQSEGEAVM-GVHTAPEECSPHHQSSNSSQVVWQDNVDPDNMTYEELLDLGETVG 162
PS D+ A+ +PE CSPHH + + + W D L+ L VG
Sbjct: 25 PSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGD-----------LMTLATWVG 73
Query: 163 T-----QSRGLSQEQIN 174
T SR L +N
Sbjct: 74 TNLEDPASRDLVVSYVN 90
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 19 AYTVTESFMDFFEGLTHAPVNYAQTGPIHDQENVYWSMNMHPYKFG------FSGPESNY 72
A +TES +DFF G +NY + D ++V + + + FS SN
Sbjct: 155 AMDMTESDLDFFAG---GGLNYFTSRS--DSKDVLAILKGNQFTINTTGLTDFSSIASNR 209
Query: 73 YYGSYEVNDHLPRIEASRRTWEYASTMNNVEPSTTDVQSEGEAVMGVHTAPEECSPHHQS 132
G ++ +P +E R N + TD + + ++ S
Sbjct: 210 KMGFLLADEAMPTMEKGR---------GNFLSAATD--------LAIQFLSKDNSAFFIM 252
Query: 133 SNSSQVVWQDNVDPDNMTYEELLDLGETVGTQ-SRGLSQEQINLLPTSKYKFGNLFLRKR 191
S SQ+ W + + + E+ D + +GT + S ++ TS ++ G L +
Sbjct: 253 SEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKSDGNTLVIVTSDHETGGFTLAAK 312
Query: 192 SGER 195
S +R
Sbjct: 313 SNKR 316
>pdb|2QIJ|C Chain C, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|D Chain D, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|B Chain B, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|A Chain A, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data
Length = 157
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 104 PSTTDVQSEGEAVM-GVHTAPEECSPHHQSSNSSQVVWQDNVDPDNMTYEELLDLGETVG 162
PS D+ A+ +PE CSPHH + + + W D L+ L VG
Sbjct: 34 PSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGD-----------LMTLATWVG 82
Query: 163 T-----QSRGLSQEQIN 174
T SR L +N
Sbjct: 83 TNLEDPASRDLVVSYVN 99
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 19 AYTVTESFMDFFEGLTHAPVNYAQTGPIHDQENVYWSMNMHPYKFG------FSGPESNY 72
A +TES +DFF G +NY + D+++V + + + FS SN
Sbjct: 155 AMDMTESDLDFFAG---GGLNYFTSR--KDKKDVLAILKGNQFTINTTGLTDFSSIASNR 209
Query: 73 YYGSYEVNDHLPRIEASRRTWEYASTMNNVEPSTTDVQSEGEAVMGVHTAPEECSPHHQS 132
G ++ +P +E+ R N + TD + + ++ S
Sbjct: 210 KMGFLLADEAMPTMESGR---------GNFLSAATD--------LAIQFLSKDNSAFFIM 252
Query: 133 SNSSQVVWQDNVDPDNMTYEELLDLGETVGTQSRGLSQEQIN--LLPTSKYKFGNLFLRK 190
S SQ+ W + + + E+ D + +GT + +++ N ++ TS ++ G L
Sbjct: 253 SEGSQIDWGGHANNASYLISEINDFDDAIGT-ALAFAKKDGNTLVIVTSDHETGGFTLAA 311
Query: 191 RSGER 195
+ +R
Sbjct: 312 KKNKR 316
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 19 AYTVTESFMDFFEGLTHAPVNYAQTGPIHDQENVYWSMNMHPYKFGFSGPESNYY 73
A+ + E F+ FFE H V A P +D ++ + P+K F G E Y
Sbjct: 5 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPY 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,105,989
Number of Sequences: 62578
Number of extensions: 338360
Number of successful extensions: 689
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 27
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)