Query 026092
Match_columns 243
No_of_seqs 182 out of 1556
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 4.1E-17 8.9E-22 150.9 4.2 73 165-240 204-277 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 4.4E-16 9.5E-21 103.4 2.2 44 194-237 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.4 7.5E-14 1.6E-18 102.8 3.1 50 188-237 14-73 (73)
4 PHA02929 N1R/p28-like protein; 99.4 3.5E-13 7.5E-18 119.7 4.4 76 165-241 147-227 (238)
5 COG5540 RING-finger-containing 99.3 7.8E-13 1.7E-17 119.8 3.7 50 192-241 322-372 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 1E-11 2.2E-16 115.2 3.2 50 191-240 285-344 (491)
7 PF13920 zf-C3HC4_3: Zinc fing 99.1 7.3E-11 1.6E-15 80.3 3.3 45 193-240 2-47 (50)
8 cd00162 RING RING-finger (Real 99.1 1.1E-10 2.5E-15 75.3 3.8 44 195-240 1-45 (45)
9 PLN03208 E3 ubiquitin-protein 99.0 3.3E-10 7.2E-15 97.6 4.6 46 192-240 17-78 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.8E-10 6E-15 73.7 3.0 39 196-236 1-39 (39)
11 PF12861 zf-Apc11: Anaphase-pr 99.0 2.8E-10 6.1E-15 86.0 3.3 49 192-240 20-81 (85)
12 COG5194 APC11 Component of SCF 99.0 4E-10 8.6E-15 83.9 2.8 53 189-241 16-81 (88)
13 KOG0802 E3 ubiquitin ligase [P 98.9 3.2E-10 6.9E-15 111.4 2.1 50 191-240 289-340 (543)
14 KOG0317 Predicted E3 ubiquitin 98.9 5.3E-10 1.1E-14 100.9 2.8 46 192-240 238-283 (293)
15 KOG0823 Predicted E3 ubiquitin 98.9 8.1E-10 1.8E-14 97.0 3.1 48 191-241 45-95 (230)
16 PHA02926 zinc finger-like prot 98.9 1.3E-09 2.8E-14 95.5 3.5 50 191-240 168-229 (242)
17 KOG0320 Predicted E3 ubiquitin 98.9 1.4E-09 3E-14 92.3 3.4 52 188-240 126-177 (187)
18 PF14634 zf-RING_5: zinc-RING 98.9 1.9E-09 4E-14 71.7 3.3 44 195-238 1-44 (44)
19 PF15227 zf-C3HC4_4: zinc fing 98.8 3.4E-09 7.3E-14 70.1 3.3 38 196-236 1-42 (42)
20 smart00184 RING Ring finger. E 98.8 3.7E-09 8.1E-14 65.8 3.4 38 196-236 1-39 (39)
21 smart00504 Ubox Modified RING 98.8 4.4E-09 9.5E-14 73.9 4.1 44 194-240 2-45 (63)
22 KOG1493 Anaphase-promoting com 98.8 1.4E-09 3E-14 80.4 0.5 55 188-242 15-82 (84)
23 PF00097 zf-C3HC4: Zinc finger 98.8 6.1E-09 1.3E-13 67.6 2.9 39 196-236 1-41 (41)
24 KOG2930 SCF ubiquitin ligase, 98.7 5.5E-09 1.2E-13 81.3 1.2 66 176-241 29-108 (114)
25 TIGR00599 rad18 DNA repair pro 98.6 2E-08 4.4E-13 95.3 3.5 48 191-241 24-71 (397)
26 KOG1734 Predicted RING-contain 98.5 2.8E-08 6.1E-13 89.2 1.1 52 189-240 220-280 (328)
27 smart00744 RINGv The RING-vari 98.5 1.3E-07 2.8E-12 64.6 3.2 42 195-237 1-49 (49)
28 KOG0828 Predicted E3 ubiquitin 98.4 8.3E-08 1.8E-12 92.1 1.7 51 191-241 569-634 (636)
29 COG5574 PEX10 RING-finger-cont 98.4 1.2E-07 2.5E-12 85.0 2.4 48 191-241 213-262 (271)
30 PF13445 zf-RING_UBOX: RING-ty 98.4 2.7E-07 5.9E-12 61.4 2.9 38 196-234 1-43 (43)
31 PF11793 FANCL_C: FANCL C-term 98.3 1E-07 2.2E-12 69.6 0.3 49 193-241 2-66 (70)
32 PF04564 U-box: U-box domain; 98.3 4.5E-07 9.7E-12 66.5 3.1 45 193-240 4-49 (73)
33 COG5219 Uncharacterized conser 98.3 1.5E-07 3.3E-12 95.8 0.9 54 188-241 1464-1523(1525)
34 KOG2164 Predicted E3 ubiquitin 98.2 5.3E-07 1.1E-11 87.0 2.6 47 193-242 186-237 (513)
35 KOG0287 Postreplication repair 98.2 4E-07 8.7E-12 84.2 1.6 46 192-240 22-67 (442)
36 KOG2177 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 75.9 1.8 44 191-237 11-54 (386)
37 COG5432 RAD18 RING-finger-cont 98.0 2.5E-06 5.4E-11 77.6 2.5 45 192-239 24-68 (391)
38 KOG4265 Predicted E3 ubiquitin 98.0 3.8E-06 8.2E-11 78.1 3.2 48 191-241 288-336 (349)
39 KOG0804 Cytoplasmic Zn-finger 98.0 2.7E-06 5.8E-11 81.1 1.8 46 192-239 174-220 (493)
40 KOG1039 Predicted E3 ubiquitin 97.9 6.9E-06 1.5E-10 76.8 2.1 50 191-240 159-220 (344)
41 KOG0825 PHD Zn-finger protein 97.8 5.3E-06 1.2E-10 83.5 -0.4 48 192-239 122-169 (1134)
42 KOG4445 Uncharacterized conser 97.7 1.2E-05 2.6E-10 73.5 0.7 52 191-242 113-187 (368)
43 PF14835 zf-RING_6: zf-RING of 97.6 1E-05 2.2E-10 58.2 -0.1 46 193-242 7-52 (65)
44 KOG0311 Predicted E3 ubiquitin 97.6 6.7E-06 1.5E-10 76.4 -1.8 46 192-240 42-89 (381)
45 KOG1941 Acetylcholine receptor 97.4 4.9E-05 1.1E-09 71.7 0.7 46 193-238 365-413 (518)
46 KOG4159 Predicted E3 ubiquitin 97.3 0.00013 2.7E-09 69.7 2.2 48 191-241 82-129 (398)
47 KOG0978 E3 ubiquitin ligase in 97.1 0.00016 3.4E-09 73.0 0.7 44 193-239 643-687 (698)
48 KOG0297 TNF receptor-associate 97.1 0.00031 6.7E-09 66.9 2.4 50 190-241 18-67 (391)
49 KOG4172 Predicted E3 ubiquitin 96.9 0.0002 4.4E-09 50.0 -0.2 45 193-240 7-53 (62)
50 KOG1785 Tyrosine kinase negati 96.9 0.00036 7.7E-09 66.2 1.0 45 193-240 369-415 (563)
51 KOG1428 Inhibitor of type V ad 96.8 0.00086 1.9E-08 71.8 3.2 67 172-240 3467-3543(3738)
52 KOG3970 Predicted E3 ubiquitin 96.8 0.00089 1.9E-08 59.3 2.7 49 192-241 49-105 (299)
53 PF12906 RINGv: RING-variant d 96.8 0.00085 1.8E-08 45.3 2.0 40 196-236 1-47 (47)
54 PF11789 zf-Nse: Zinc-finger o 96.7 0.001 2.2E-08 46.8 2.2 42 192-235 10-53 (57)
55 KOG2879 Predicted E3 ubiquitin 96.7 0.0017 3.7E-08 58.9 3.9 53 187-241 233-287 (298)
56 KOG0801 Predicted E3 ubiquitin 96.5 0.00087 1.9E-08 56.6 0.5 30 191-220 175-204 (205)
57 KOG3268 Predicted E3 ubiquitin 96.4 0.0016 3.4E-08 55.9 1.9 52 191-242 163-229 (234)
58 PF10367 Vps39_2: Vacuolar sor 96.4 0.0013 2.8E-08 50.3 1.2 33 191-224 76-108 (109)
59 PHA02862 5L protein; Provision 96.3 0.0029 6.3E-08 52.5 2.5 49 193-241 2-53 (156)
60 KOG2660 Locus-specific chromos 96.3 0.0012 2.6E-08 61.2 0.2 48 191-240 13-60 (331)
61 KOG1814 Predicted E3 ubiquitin 96.2 0.0023 5E-08 60.9 2.0 38 192-229 183-220 (445)
62 KOG1952 Transcription factor N 96.2 0.0066 1.4E-07 62.3 5.2 48 191-238 189-244 (950)
63 PHA02825 LAP/PHD finger-like p 96.2 0.004 8.6E-08 52.4 2.9 46 191-240 6-58 (162)
64 COG5152 Uncharacterized conser 96.2 0.0018 4E-08 56.4 0.9 44 194-240 197-240 (259)
65 KOG4692 Predicted E3 ubiquitin 96.2 0.0032 7E-08 59.1 2.6 48 191-241 420-467 (489)
66 PHA03096 p28-like protein; Pro 96.2 0.0025 5.5E-08 58.4 1.8 45 194-238 179-231 (284)
67 PF14570 zf-RING_4: RING/Ubox 96.1 0.0038 8.3E-08 42.5 2.1 44 196-239 1-46 (48)
68 PF05883 Baculo_RING: Baculovi 96.0 0.0038 8.3E-08 51.1 2.0 43 192-234 25-73 (134)
69 PF14447 Prok-RING_4: Prokaryo 95.8 0.0039 8.4E-08 43.6 0.9 43 193-240 7-49 (55)
70 KOG1571 Predicted E3 ubiquitin 95.7 0.0061 1.3E-07 57.1 2.2 43 192-240 304-346 (355)
71 KOG4275 Predicted E3 ubiquitin 95.6 0.0033 7.1E-08 57.6 0.2 93 140-240 243-341 (350)
72 KOG1813 Predicted E3 ubiquitin 95.6 0.0041 8.8E-08 57.0 0.7 44 194-240 242-285 (313)
73 KOG1002 Nucleotide excision re 95.5 0.0059 1.3E-07 60.0 1.4 50 190-242 533-587 (791)
74 COG5222 Uncharacterized conser 95.2 0.016 3.5E-07 53.5 3.0 46 194-242 275-322 (427)
75 KOG3039 Uncharacterized conser 95.2 0.019 4E-07 51.7 3.3 49 192-240 220-269 (303)
76 KOG0827 Predicted E3 ubiquitin 94.8 0.0017 3.8E-08 61.4 -4.3 49 192-240 195-244 (465)
77 COG5236 Uncharacterized conser 94.5 0.032 6.9E-07 52.5 3.2 50 188-240 56-107 (493)
78 KOG2932 E3 ubiquitin ligase in 94.4 0.014 3E-07 54.0 0.7 44 193-240 90-133 (389)
79 PF08746 zf-RING-like: RING-li 94.2 0.024 5.3E-07 37.5 1.3 41 196-236 1-43 (43)
80 PF04641 Rtf2: Rtf2 RING-finge 94.0 0.061 1.3E-06 48.4 3.9 50 190-240 110-160 (260)
81 PF14446 Prok-RING_1: Prokaryo 93.9 0.066 1.4E-06 37.3 3.0 34 192-225 4-38 (54)
82 KOG0826 Predicted E3 ubiquitin 93.1 0.072 1.6E-06 49.7 2.8 46 192-240 299-345 (357)
83 KOG2114 Vacuolar assembly/sort 92.9 0.055 1.2E-06 55.8 1.9 41 194-239 841-881 (933)
84 KOG2817 Predicted E3 ubiquitin 92.8 0.087 1.9E-06 50.1 3.0 48 192-239 333-383 (394)
85 KOG1001 Helicase-like transcri 92.5 0.05 1.1E-06 55.4 1.1 43 194-240 455-499 (674)
86 KOG1940 Zn-finger protein [Gen 92.4 0.071 1.5E-06 48.7 1.8 46 193-238 158-204 (276)
87 KOG2034 Vacuolar sorting prote 91.7 0.084 1.8E-06 54.7 1.6 37 191-228 815-851 (911)
88 COG5175 MOT2 Transcriptional r 91.5 0.11 2.4E-06 48.8 2.1 49 191-239 12-62 (480)
89 PF10272 Tmpp129: Putative tra 91.3 0.14 3.1E-06 48.4 2.6 29 214-242 311-352 (358)
90 KOG3053 Uncharacterized conser 90.7 0.095 2.1E-06 47.4 0.7 52 191-242 18-83 (293)
91 KOG1609 Protein involved in mR 90.6 0.14 3.1E-06 46.1 1.8 48 193-240 78-133 (323)
92 KOG3002 Zn finger protein [Gen 89.3 0.22 4.8E-06 46.1 2.0 42 192-240 47-90 (299)
93 KOG0309 Conserved WD40 repeat- 88.8 0.25 5.3E-06 50.8 2.0 26 210-235 1044-1069(1081)
94 KOG1100 Predicted E3 ubiquitin 88.1 0.26 5.7E-06 43.2 1.5 38 196-240 161-199 (207)
95 KOG0298 DEAD box-containing he 87.9 0.18 3.9E-06 54.3 0.4 46 191-238 1151-1196(1394)
96 KOG3899 Uncharacterized conser 87.5 0.29 6.3E-06 45.2 1.5 29 214-242 325-366 (381)
97 PF05290 Baculo_IE-1: Baculovi 86.5 0.5 1.1E-05 38.8 2.2 46 192-239 79-130 (140)
98 KOG0802 E3 ubiquitin ligase [P 83.6 0.49 1.1E-05 46.9 1.1 43 191-240 477-519 (543)
99 KOG1812 Predicted E3 ubiquitin 83.0 0.47 1E-05 45.3 0.7 39 192-230 145-184 (384)
100 PF03854 zf-P11: P-11 zinc fin 82.9 0.63 1.4E-05 31.7 1.0 41 195-240 4-45 (50)
101 COG5183 SSM4 Protein involved 80.8 1.1 2.4E-05 46.5 2.4 49 191-240 10-65 (1175)
102 KOG0825 PHD Zn-finger protein 80.7 1.2 2.6E-05 46.1 2.6 48 192-239 95-152 (1134)
103 KOG3005 GIY-YIG type nuclease 80.0 0.91 2E-05 41.4 1.4 48 193-240 182-242 (276)
104 KOG0269 WD40 repeat-containing 79.1 1.8 3.9E-05 44.6 3.2 40 194-235 780-820 (839)
105 COG5220 TFB3 Cdk activating ki 78.1 1.2 2.7E-05 40.1 1.6 47 192-238 9-61 (314)
106 KOG4362 Transcriptional regula 77.8 0.61 1.3E-05 47.5 -0.5 45 193-240 21-68 (684)
107 PF13901 DUF4206: Domain of un 77.7 1.6 3.4E-05 38.0 2.2 40 193-238 152-197 (202)
108 KOG3161 Predicted E3 ubiquitin 77.5 0.8 1.7E-05 46.4 0.2 40 193-234 11-51 (861)
109 KOG1815 Predicted E3 ubiquitin 76.7 1.5 3.2E-05 42.5 1.8 38 191-230 68-105 (444)
110 KOG2066 Vacuolar assembly/sort 74.9 1.2 2.7E-05 45.9 0.8 44 192-236 783-830 (846)
111 KOG1829 Uncharacterized conser 74.2 1.1 2.4E-05 45.0 0.2 42 193-238 511-558 (580)
112 KOG1812 Predicted E3 ubiquitin 73.6 2 4.3E-05 41.1 1.8 45 192-236 305-351 (384)
113 KOG4718 Non-SMC (structural ma 73.2 2 4.4E-05 38.0 1.6 43 193-237 181-223 (235)
114 PF02891 zf-MIZ: MIZ/SP-RING z 71.2 5.7 0.00012 26.9 3.2 43 194-239 3-50 (50)
115 COG5109 Uncharacterized conser 69.4 3.9 8.5E-05 38.3 2.7 46 192-237 335-383 (396)
116 KOG2068 MOT2 transcription fac 63.9 5.1 0.00011 37.5 2.3 47 194-240 250-297 (327)
117 smart00249 PHD PHD zinc finger 61.9 5.8 0.00012 24.8 1.7 30 195-225 1-31 (47)
118 KOG3113 Uncharacterized conser 59.9 8.4 0.00018 35.1 2.9 47 192-240 110-157 (293)
119 PF07975 C1_4: TFIIH C1-like d 59.8 8.1 0.00018 26.6 2.1 42 196-237 2-50 (51)
120 PF01363 FYVE: FYVE zinc finge 59.2 4.2 9E-05 28.7 0.7 38 191-228 7-45 (69)
121 smart00064 FYVE Protein presen 58.9 2.2 4.8E-05 30.1 -0.8 38 192-229 9-47 (68)
122 smart00132 LIM Zinc-binding do 58.3 7.2 0.00016 23.5 1.6 37 195-240 1-37 (39)
123 PF06844 DUF1244: Protein of u 57.7 6.2 0.00014 28.7 1.3 11 218-228 12-22 (68)
124 PF13719 zinc_ribbon_5: zinc-r 55.7 6.5 0.00014 24.9 1.1 26 194-219 3-36 (37)
125 PLN02189 cellulose synthase 55.2 12 0.00026 40.1 3.6 48 192-239 33-85 (1040)
126 PF04710 Pellino: Pellino; In 54.8 4 8.8E-05 39.2 0.0 45 192-239 276-337 (416)
127 KOG2169 Zn-finger transcriptio 54.0 13 0.00027 38.0 3.4 40 194-240 307-355 (636)
128 PF00628 PHD: PHD-finger; Int 53.5 7 0.00015 25.7 1.0 43 195-238 1-50 (51)
129 PF04423 Rad50_zn_hook: Rad50 53.3 4.6 9.9E-05 27.5 0.1 10 231-240 21-30 (54)
130 KOG3039 Uncharacterized conser 53.1 7.4 0.00016 35.4 1.4 33 193-228 43-75 (303)
131 PF07191 zinc-ribbons_6: zinc- 52.5 1.1 2.5E-05 32.8 -3.2 42 194-243 2-43 (70)
132 cd00065 FYVE FYVE domain; Zinc 50.4 11 0.00024 25.3 1.7 36 193-228 2-38 (57)
133 PF11023 DUF2614: Protein of u 50.3 12 0.00027 29.8 2.1 19 224-242 79-97 (114)
134 KOG3799 Rab3 effector RIM1 and 46.6 2.9 6.4E-05 34.6 -2.0 53 191-243 63-120 (169)
135 PF06906 DUF1272: Protein of u 45.4 34 0.00073 24.1 3.4 45 194-240 6-51 (57)
136 PF14169 YdjO: Cold-inducible 45.3 10 0.00022 26.9 0.8 16 225-240 28-49 (59)
137 PF14569 zf-UDP: Zinc-binding 45.2 24 0.00052 26.5 2.8 48 192-239 8-60 (80)
138 TIGR00622 ssl1 transcription f 45.0 25 0.00053 28.1 3.0 46 193-238 55-111 (112)
139 PF13717 zinc_ribbon_4: zinc-r 44.8 13 0.00028 23.4 1.2 25 195-219 4-36 (36)
140 KOG4185 Predicted E3 ubiquitin 44.5 3.9 8.4E-05 37.0 -1.8 47 193-239 207-265 (296)
141 PF06750 DiS_P_DiS: Bacterial 44.5 21 0.00046 27.2 2.6 38 192-241 32-69 (92)
142 PLN02638 cellulose synthase A 44.2 24 0.00053 38.1 3.7 47 192-239 16-68 (1079)
143 KOG3842 Adaptor protein Pellin 41.8 22 0.00049 33.5 2.7 49 192-240 340-413 (429)
144 PLN02436 cellulose synthase A 40.4 30 0.00064 37.5 3.7 48 192-239 35-87 (1094)
145 KOG4021 Mitochondrial ribosoma 39.8 13 0.00028 32.6 0.8 24 220-243 97-121 (239)
146 PF10571 UPF0547: Uncharacteri 39.2 16 0.00034 21.6 0.9 11 231-241 1-11 (26)
147 COG5627 MMS21 DNA repair prote 39.0 15 0.00032 33.3 1.0 46 193-240 189-238 (275)
148 cd00350 rubredoxin_like Rubred 38.5 25 0.00054 21.5 1.7 11 229-239 16-26 (33)
149 KOG2807 RNA polymerase II tran 37.1 24 0.00053 33.3 2.2 48 192-239 329-376 (378)
150 PF14311 DUF4379: Domain of un 34.8 23 0.0005 24.0 1.3 22 214-236 34-55 (55)
151 PF04216 FdhE: Protein involve 34.8 4.1 8.8E-05 37.1 -3.3 41 193-238 172-219 (290)
152 PLN02400 cellulose synthase 34.6 31 0.00068 37.3 2.8 48 192-239 35-87 (1085)
153 PF07649 C1_3: C1-like domain; 33.1 33 0.00072 20.3 1.6 29 195-223 2-30 (30)
154 KOG1729 FYVE finger containing 32.9 7.6 0.00017 35.8 -1.8 38 193-230 214-251 (288)
155 PF02318 FYVE_2: FYVE-type zin 32.0 24 0.00052 27.8 1.1 46 192-238 53-102 (118)
156 PF13832 zf-HC5HC2H_2: PHD-zin 31.9 46 0.001 25.4 2.7 32 193-226 55-88 (110)
157 PRK03564 formate dehydrogenase 30.3 24 0.00053 32.9 1.0 42 192-238 186-234 (309)
158 PF10497 zf-4CXXC_R1: Zinc-fin 30.3 51 0.0011 25.8 2.7 24 215-238 37-69 (105)
159 COG4847 Uncharacterized protei 30.2 53 0.0012 25.6 2.7 36 193-229 6-41 (103)
160 COG3492 Uncharacterized protei 30.0 26 0.00057 27.1 1.0 12 218-229 43-54 (104)
161 KOG2041 WD40 repeat protein [G 29.8 26 0.00057 36.6 1.2 23 214-240 1162-1184(1189)
162 COG2835 Uncharacterized conser 29.7 23 0.00049 25.3 0.6 11 232-242 10-20 (60)
163 KOG3579 Predicted E3 ubiquitin 29.6 33 0.00072 31.9 1.7 37 193-230 268-306 (352)
164 PRK05978 hypothetical protein; 29.4 27 0.00057 29.2 1.0 29 194-240 34-62 (148)
165 smart00734 ZnF_Rad18 Rad18-lik 29.2 26 0.00057 20.5 0.7 9 232-240 3-11 (26)
166 PLN02915 cellulose synthase A 29.2 59 0.0013 35.2 3.7 48 192-239 14-66 (1044)
167 PF00412 LIM: LIM domain; Int 29.1 23 0.00049 23.5 0.5 15 193-207 26-40 (58)
168 KOG2071 mRNA cleavage and poly 28.9 27 0.00059 35.2 1.1 35 191-225 511-555 (579)
169 KOG1245 Chromatin remodeling c 28.6 20 0.00043 40.0 0.1 52 188-239 1103-1158(1404)
170 KOG0824 Predicted E3 ubiquitin 26.1 21 0.00045 33.3 -0.2 47 192-240 104-150 (324)
171 KOG2113 Predicted RNA binding 26.0 56 0.0012 30.9 2.6 45 192-241 342-387 (394)
172 PRK11827 hypothetical protein; 25.1 25 0.00054 25.0 0.1 18 224-241 2-19 (60)
173 PF07800 DUF1644: Protein of u 24.6 32 0.00069 29.2 0.6 10 232-241 82-91 (162)
174 PRK01343 zinc-binding protein; 24.3 42 0.00091 23.7 1.1 11 230-240 9-19 (57)
175 PF09943 DUF2175: Uncharacteri 22.7 72 0.0016 25.0 2.2 33 194-227 3-35 (101)
176 KOG2979 Protein involved in DN 22.5 55 0.0012 29.9 1.8 45 193-239 176-224 (262)
177 smart00647 IBR In Between Ring 22.0 24 0.00052 23.8 -0.5 21 206-226 37-58 (64)
178 PF04710 Pellino: Pellino; In 22.0 30 0.00065 33.4 0.0 48 193-240 328-400 (416)
179 smart00531 TFIIE Transcription 21.8 75 0.0016 25.9 2.3 11 231-241 124-134 (147)
180 KOG1815 Predicted E3 ubiquitin 20.9 28 0.00061 33.7 -0.4 37 193-229 226-267 (444)
181 TIGR01562 FdhE formate dehydro 20.7 43 0.00094 31.2 0.8 41 193-238 184-232 (305)
182 KOG4430 Topoisomerase I-bindin 20.6 37 0.00079 34.2 0.3 52 191-242 258-310 (553)
183 KOG1356 Putative transcription 20.5 30 0.00065 36.4 -0.3 34 192-227 228-262 (889)
184 PF07282 OrfB_Zn_ribbon: Putat 20.1 81 0.0018 21.9 2.0 34 192-225 27-63 (69)
185 PF06677 Auto_anti-p27: Sjogre 20.0 67 0.0015 21.0 1.4 18 224-241 11-28 (41)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.1e-17 Score=150.94 Aligned_cols=73 Identities=26% Similarity=0.612 Sum_probs=62.7
Q ss_pred CCCCCHHHHhhCCceeeecCchhhccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCccCccc
Q 026092 165 SRGLSQEQINLLPTSKYKFGNLFLRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK-VTGLALKHN 240 (243)
Q Consensus 165 ~rGLs~~~I~sLp~~~~k~~~~~~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~-tCPlCR~~v 240 (243)
.+.+.+..+.++|..+|+..... .....|+||+++|+.|++++.|||+|.||..||++||..++ .||+||+.+
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~---~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDE---DATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred hhhhHHHHHhhCCcEEecccccc---CCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 34789999999999999875321 11269999999999999999999999999999999998774 599999876
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=4.4e-16 Score=103.40 Aligned_cols=44 Identities=36% Similarity=0.930 Sum_probs=40.8
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccC
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
++|+||+++|..++.++.|+|+|+||..||.+||+.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.43 E-value=7.5e-14 Score=102.78 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=39.2
Q ss_pred hccCCCcccccccccccCC----------CeeEEeCCCCcccHHHHHHHHhcCCCCCccC
Q 026092 188 LRKRSGERCVICQMKYKRG----------DRQMKLPCRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~g----------e~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
......+.|+||++.|.+. ..+...+|+|.||..||.+||+.+.+||+||
T Consensus 14 ~~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 14 SWDIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp EESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred eecCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3444567799999999432 2355567999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.37 E-value=3.5e-13 Score=119.70 Aligned_cols=76 Identities=17% Similarity=0.368 Sum_probs=57.9
Q ss_pred CCCCCHHHHhhCCceeeecCchhhccCCCcccccccccccCCCe----e-EEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 165 SRGLSQEQINLLPTSKYKFGNLFLRKRSGERCVICQMKYKRGDR----Q-MKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 165 ~rGLs~~~I~sLp~~~~k~~~~~~~~~~~~~C~ICle~f~~ge~----v-~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
.++.++..++.+|....+..... ......+|+||++.+...+. + +.++|+|.||..||.+|++.+.+||+||++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~-~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLY-NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhh-cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 45779999999998765433221 12346899999999876441 2 334599999999999999999999999997
Q ss_pred cc
Q 026092 240 NY 241 (243)
Q Consensus 240 v~ 241 (243)
+.
T Consensus 226 ~~ 227 (238)
T PHA02929 226 FI 227 (238)
T ss_pred ee
Confidence 64
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.8e-13 Score=119.83 Aligned_cols=50 Identities=30% Similarity=0.664 Sum_probs=46.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-INKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~v~ 241 (243)
...+|+||+++|-.+++++.|||.|.||..||++|+. -+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4579999999999999999999999999999999997 6779999999874
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-11 Score=115.23 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=44.0
Q ss_pred CCCccccccccc-ccCCC---------eeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMK-YKRGD---------RQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~-f~~ge---------~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.++..|.||+++ |+.+. ++.+|||||.+|.+|++.|+.++++||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 466899999999 66542 357899999999999999999999999999996
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.09 E-value=7.3e-11 Score=80.31 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=39.3
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
+..|.||++.... +..+||+|. |+..|+.+|++.++.||+||++|
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 4689999998665 888999999 99999999999999999999987
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.08 E-value=1.1e-10 Score=75.27 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=36.7
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 195 RCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
.|+||++.+ .+....++|+|.||..|+..|++. +..||+||+.+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 334555559999999999999987 77899999864
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=3.3e-10 Score=97.56 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=39.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc----------------CCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI----------------NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~----------------~~tCPlCR~~v 240 (243)
+..+|+||++.+++ .++++|+|+||..||.+|+.. ...||+||+++
T Consensus 17 ~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 56899999998865 566889999999999999852 24899999987
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=2.8e-10 Score=73.68 Aligned_cols=39 Identities=31% Similarity=0.654 Sum_probs=33.4
Q ss_pred cccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlC 236 (243)
|+||++.+.. .++.++|||+|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998777 44678899999999999999999999998
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.99 E-value=2.8e-10 Score=86.01 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=39.1
Q ss_pred CCcccccccccccC--------CCe--eEEeCCCCcccHHHHHHHHhc---CCCCCccCccc
Q 026092 192 SGERCVICQMKYKR--------GDR--QMKLPCRHVYHSECITKWLGI---NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~--------ge~--v~~LPC~H~FH~~CI~~WLk~---~~tCPlCR~~v 240 (243)
.++.|+||+..|.. |+. +..-.|+|.||..||.+||.+ +..||+||++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 47899999999974 222 333349999999999999985 46999999975
No 12
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.95 E-value=4e-10 Score=83.85 Aligned_cols=53 Identities=26% Similarity=0.559 Sum_probs=39.6
Q ss_pred ccCCCcccccccccccC-----------CCe-eEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 189 RKRSGERCVICQMKYKR-----------GDR-QMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 189 ~~~~~~~C~ICle~f~~-----------ge~-v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....+.|+||...|-. +++ +... -|.|.||..||.+||.++..||+||++..
T Consensus 16 wdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 16 WDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 33445788888776643 333 2222 29999999999999999999999999764
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.2e-10 Score=111.43 Aligned_cols=50 Identities=26% Similarity=0.670 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCCe--eEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDR--QMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~--v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|+||++.+..+.+ ..+|||+|+||..|+.+||+++++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346899999999998876 78899999999999999999999999999844
No 14
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.3e-10 Score=100.90 Aligned_cols=46 Identities=20% Similarity=0.519 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|.|||+.... +.-+||||+||..||..|+..+..||+||.+.
T Consensus 238 a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 45789999997655 67789999999999999999999999999864
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.1e-10 Score=97.01 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC---CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN---KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~---~tCPlCR~~v~ 241 (243)
....+|.|||+.-++ .++..|||+||..||.+||..+ +.||+||..|-
T Consensus 45 ~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456899999987555 6667799999999999999754 57899998763
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.87 E-value=1.3e-09 Score=95.55 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=38.0
Q ss_pred CCCcccccccccccCC----C-eeEEe-CCCCcccHHHHHHHHhcC------CCCCccCccc
Q 026092 191 RSGERCVICQMKYKRG----D-RQMKL-PCRHVYHSECITKWLGIN------KVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~g----e-~v~~L-PC~H~FH~~CI~~WLk~~------~tCPlCR~~v 240 (243)
..+.+|+||++..-.. + ....| +|+|.||..||.+|.+.+ ++||+||...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3568999999886332 1 23445 499999999999999753 4699999865
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-09 Score=92.26 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=43.2
Q ss_pred hccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 188 LRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..+.+...|+|||..+..... ....|||+||+.||..-|+....||+|++.|
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 444566899999999877432 3466999999999999999999999999865
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.86 E-value=1.9e-09 Score=71.67 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=39.2
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 195 RCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
.|.||++.|........++|+|+|+..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667888999999999999999866789999986
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.82 E-value=3.4e-09 Score=70.06 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=30.5
Q ss_pred cccccccccCCCeeEEeCCCCcccHHHHHHHHhcC----CCCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN----KVTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~----~tCPlC 236 (243)
|+||++-|++ .+.|+|||.|+..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 8999999999999999999754 369998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=3.7e-09 Score=65.75 Aligned_cols=38 Identities=34% Similarity=0.764 Sum_probs=33.0
Q ss_pred cccccccccCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-INKVTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-~~~tCPlC 236 (243)
|+||++. ....+.++|+|.||..|+..|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899887 34578899999999999999998 66789998
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.82 E-value=4.4e-09 Score=73.91 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=39.8
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|+||++.+++ .+.++|||+|++.||.+|++.+.+||+|+.++
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 479999999887 57789999999999999999999999999876
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-09 Score=80.37 Aligned_cols=55 Identities=27% Similarity=0.602 Sum_probs=40.9
Q ss_pred hccCCCcccccccccccC--------CCee-EEeC-CCCcccHHHHHHHHhc---CCCCCccCccccc
Q 026092 188 LRKRSGERCVICQMKYKR--------GDRQ-MKLP-CRHVYHSECITKWLGI---NKVTGLALKHNYI 242 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~--------ge~v-~~LP-C~H~FH~~CI~~WLk~---~~tCPlCR~~v~i 242 (243)
......+.|.||...|.. |+.. .++- |.|.||..||.+||.. +..||+||+...+
T Consensus 15 tW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 15 TWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred EEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 344566799999999975 3322 2222 9999999999999964 3589999997643
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.75 E-value=6.1e-09 Score=67.56 Aligned_cols=39 Identities=31% Similarity=0.750 Sum_probs=33.4
Q ss_pred cccccccccCCCeeEEeCCCCcccHHHHHHHHh--cCCCCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLG--INKVTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk--~~~tCPlC 236 (243)
|+||++.+... ...++|+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999987763 25788999999999999998 45689998
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.5e-09 Score=81.28 Aligned_cols=66 Identities=23% Similarity=0.465 Sum_probs=46.8
Q ss_pred CCceeeecCchhhccCCCcccccccccccC-------------CCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 176 LPTSKYKFGNLFLRKRSGERCVICQMKYKR-------------GDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 176 Lp~~~~k~~~~~~~~~~~~~C~ICle~f~~-------------ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
+...|+..-.+.......+.|+||...+-+ ++..+.. -|.|.||..||.+||+++..||+|.++..
T Consensus 29 F~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 29 FELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 334445444555556677899999865521 2222222 39999999999999999999999998764
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=2e-08 Score=95.25 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||+..|.. .++++|+|.||..||..||.....||+||.++.
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 356799999998865 557899999999999999998889999998763
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.8e-08 Score=89.23 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=43.8
Q ss_pred ccCCCcccccccccccCCC-------eeEEeCCCCcccHHHHHHHHh--cCCCCCccCccc
Q 026092 189 RKRSGERCVICQMKYKRGD-------RQMKLPCRHVYHSECITKWLG--INKVTGLALKHN 240 (243)
Q Consensus 189 ~~~~~~~C~ICle~f~~ge-------~v~~LPC~H~FH~~CI~~WLk--~~~tCPlCR~~v 240 (243)
+..++..|+||-..+.... ++.+|.|+|+||..||.-|-- .+++||.|+..|
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3446789999999887655 688999999999999999974 567999999865
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.47 E-value=1.3e-07 Score=64.58 Aligned_cols=42 Identities=26% Similarity=0.652 Sum_probs=33.2
Q ss_pred ccccccccccCCCeeEEeCCC-----CcccHHHHHHHHhcC--CCCCccC
Q 026092 195 RCVICQMKYKRGDRQMKLPCR-----HVYHSECITKWLGIN--KVTGLAL 237 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~-----H~FH~~CI~~WLk~~--~tCPlCR 237 (243)
.|.||++ ....+...++||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 4444556678974 899999999999654 5999995
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=8.3e-08 Score=92.14 Aligned_cols=51 Identities=24% Similarity=0.581 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCC--------------eeEEeCCCCcccHHHHHHHHhcC-CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGD--------------RQMKLPCRHVYHSECITKWLGIN-KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge--------------~v~~LPC~H~FH~~CI~~WLk~~-~tCPlCR~~v~ 241 (243)
....+|+||+.+..... ..+..||.|+||..|+.+|+..- -.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 35679999998875422 24566999999999999999854 49999999874
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-07 Score=84.96 Aligned_cols=48 Identities=19% Similarity=0.460 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHH-HHhcCC-CCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITK-WLGINK-VTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~-WLk~~~-tCPlCR~~v~ 241 (243)
.....|+||++.... ...+||||+||..||.. |=+.+. .||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 356889999987555 77889999999999999 987775 4999999764
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.37 E-value=2.7e-07 Score=61.40 Aligned_cols=38 Identities=29% Similarity=0.667 Sum_probs=23.0
Q ss_pred cccccccccC-CCeeEEeCCCCcccHHHHHHHHhcC----CCCC
Q 026092 196 CVICQMKYKR-GDRQMKLPCRHVYHSECITKWLGIN----KVTG 234 (243)
Q Consensus 196 C~ICle~f~~-ge~v~~LPC~H~FH~~CI~~WLk~~----~tCP 234 (243)
|+||.+ |.. ....++|+|||+|+..||.++++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 755 4456889999999999999999854 2676
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.34 E-value=1e-07 Score=69.64 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=23.7
Q ss_pred CcccccccccccCCCee--EEeC---CCCcccHHHHHHHHhc---C--------CCCCccCcccc
Q 026092 193 GERCVICQMKYKRGDRQ--MKLP---CRHVYHSECITKWLGI---N--------KVTGLALKHNY 241 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v--~~LP---C~H~FH~~CI~~WLk~---~--------~tCPlCR~~v~ 241 (243)
+.+|.||...+...+.. ...+ |+..||..||.+||.. . ..||.|+++|-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999987633322 2232 9999999999999973 1 25999999874
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.31 E-value=4.5e-07 Score=66.49 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=37.0
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
...|+||.+-+.+ .+++||||.|.+.||.+||+. +.+||+|+.++
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l 49 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPL 49 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-
T ss_pred ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcC
Confidence 4689999999888 889999999999999999998 88999999876
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.31 E-value=1.5e-07 Score=95.83 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=40.5
Q ss_pred hccCCCcccccccccccCCCe---eEEeC-CCCcccHHHHHHHHhcC--CCCCccCcccc
Q 026092 188 LRKRSGERCVICQMKYKRGDR---QMKLP-CRHVYHSECITKWLGIN--KVTGLALKHNY 241 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~ge~---v~~LP-C~H~FH~~CI~~WLk~~--~tCPlCR~~v~ 241 (243)
..-++.++|+||...+..-++ -.++| |+|.||..|+.+|+++. ++||+||.++.
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344578999999987763221 11233 99999999999999864 69999998764
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.3e-07 Score=87.04 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=37.9
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC-----CCCCccCccccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN-----KVTGLALKHNYI 242 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~-----~tCPlCR~~v~i 242 (243)
...|+|||+.... ...+.|||+||..||-+++... ..||+||..|..
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999987655 3444599999999999988644 589999998754
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.23 E-value=4e-07 Score=84.19 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.-..|.||.+-|.. .+++||+|.||.-||...|..+..||.|+.++
T Consensus 22 ~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 45799999999988 78899999999999999999999999999865
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-06 Score=75.88 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccC
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
.....|+||++.|... ..|||+|.||..||..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 4578999999999995 7899999999999999998566899999
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=2.5e-06 Score=77.64 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
....|-||-+-|.. ....+|||.||.-||...|..+..||+||.+
T Consensus 24 s~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 24 SMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hHHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCcccccc
Confidence 45789999988877 5667899999999999999999999999975
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.8e-06 Score=78.12 Aligned_cols=48 Identities=27% Similarity=0.491 Sum_probs=40.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
+...+|+|||.+-++ +.+|||.|. .|..|.+.---.++.||+||+++.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 346899999998777 889999996 688898886657789999999874
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=2.7e-06 Score=81.14 Aligned_cols=46 Identities=17% Similarity=0.529 Sum_probs=36.6
Q ss_pred CCcccccccccccCCC-eeEEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGD-RQMKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge-~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
+--+|+|||+.+...- -++.+.|.|.||..|+.+| ...+||+||--
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~ 220 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYC 220 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhh
Confidence 4468999999887633 2445559999999999999 67799999853
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.9e-06 Score=76.80 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=39.1
Q ss_pred CCCcccccccccccCCC----eeEEeC-CCCcccHHHHHHHH--hc-----CCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGD----RQMKLP-CRHVYHSECITKWL--GI-----NKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge----~v~~LP-C~H~FH~~CI~~WL--k~-----~~tCPlCR~~v 240 (243)
..+..|.||++...+.- ...+|| |.|.||..||.+|- +. .+.||.||.+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999876533 134556 99999999999998 34 57999999864
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.75 E-value=5.3e-06 Score=83.54 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
....|+||+..+.++......+|+|.||..||..|-+.-.+||+||..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~E 169 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGE 169 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhh
Confidence 457899999999998877778899999999999999999999999985
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.68 E-value=1.2e-05 Score=73.54 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=44.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh-----------------------cCCCCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-----------------------INKVTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-----------------------~~~tCPlCR~~v~i 242 (243)
-....|+|||-.|..++...+++|-|.||..|+.++|. .+..||+||-+|-|
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35679999999999999999999999999999998875 11379999988743
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.65 E-value=1e-05 Score=58.22 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=23.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNYI 242 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~i 242 (243)
...|++|..-++. .+..-.|.|+|+..||..-+. +.||+|+.|..+
T Consensus 7 lLrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred hcCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 4689999988666 233344999999999988654 459999998643
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.7e-06 Score=76.45 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
....|+|||.-++. .+..+ |.|.||..||.+-|+. ++.||.||+.+
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 46799999998776 45555 9999999999999975 67999999875
No 45
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.38 E-value=4.9e-05 Score=71.73 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=39.3
Q ss_pred CcccccccccccCC-CeeEEeCCCCcccHHHHHHHHhcC--CCCCccCc
Q 026092 193 GERCVICQMKYKRG-DRQMKLPCRHVYHSECITKWLGIN--KVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~g-e~v~~LPC~H~FH~~CI~~WLk~~--~tCPlCR~ 238 (243)
+..|..|-+.+... +.+.-|||.|+||..|+...|..+ .+||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 56799999988764 457889999999999999999765 59999994
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00013 Score=69.67 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
..+..|.||...+.. .+.+||||.|+..||++-|..+..||.||.++.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCC---CccccccccccHHHHHHHhccCCCCcccccccc
Confidence 357899999887776 778899999999999998888899999998764
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00016 Score=72.96 Aligned_cols=44 Identities=18% Similarity=0.448 Sum_probs=36.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
-..|++|-..+++ .++..|+|+||..||.+-+. +.+.||.|.+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAA 687 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 5789999877666 55556999999999999985 56899999874
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.06 E-value=0.00031 Score=66.89 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=41.6
Q ss_pred cCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 190 KRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
......|+||...+.+.-. ...|+|.||..||..|+..+..||.|+.++.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~--~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ--TTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCC--CCCCCCcccccccchhhccCcCCcccccccc
Confidence 3456899999998877322 2569999999999999999999999998764
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0002 Score=50.01 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=31.8
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHh-cCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLG-INKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk-~~~tCPlCR~~v 240 (243)
..+|.||.+.-.+ -+.-.|||. .+..|-.+-++ .+..||+||++|
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 3799999986333 112239995 56677665555 788999999986
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.87 E-value=0.00036 Score=66.23 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=36.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc--CCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI--NKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~--~~tCPlCR~~v 240 (243)
-+-|-||-+.=++ +.+=||||+.|..|+..|-.. .++||.||-+|
T Consensus 369 FeLCKICaendKd---vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 369 FELCKICAENDKD---VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHHhhccCCC---cccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 3679999876444 777789999999999999743 46999999765
No 51
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.80 E-value=0.00086 Score=71.76 Aligned_cols=67 Identities=16% Similarity=0.375 Sum_probs=48.3
Q ss_pred HHhhCCceeeecCchhhccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC----------CCCCccCccc
Q 026092 172 QINLLPTSKYKFGNLFLRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN----------KVTGLALKHN 240 (243)
Q Consensus 172 ~I~sLp~~~~k~~~~~~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~----------~tCPlCR~~v 240 (243)
+-..||-...+++. .+....+.|.||..+--..-..+.|.|+|+||..|...-|... -+||+|+.+|
T Consensus 3467 EE~CLPCl~Cdks~--tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3467 EEHCLPCLHCDKSA--TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hhhcccccccChhh--hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 33556655544432 2445678999998776666677889999999999998666432 2899999876
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00089 Score=59.33 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC--------CCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN--------KVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~--------~tCPlCR~~v~ 241 (243)
-.-.|..|-..+..|+.++ |-|-|+||..|+..|-..- -.||-|..+||
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3468999999999998776 6799999999999997632 37999999886
No 53
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.78 E-value=0.00085 Score=45.27 Aligned_cols=40 Identities=23% Similarity=0.680 Sum_probs=27.6
Q ss_pred cccccccccCCCeeEEeCC--CC---cccHHHHHHHHhc--CCCCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPC--RH---VYHSECITKWLGI--NKVTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC--~H---~FH~~CI~~WLk~--~~tCPlC 236 (243)
|-||++.-...+ ..+.|| += ..|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998876655 556785 33 7899999999974 4689988
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.73 E-value=0.001 Score=46.76 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc--CCCCCc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI--NKVTGL 235 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~--~~tCPl 235 (243)
....|+|.+..|++ .++...|+|+|-+..|.+||+. ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999998876 3455569999999999999944 458998
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0017 Score=58.94 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=38.9
Q ss_pred hhccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc--CCCCCccCcccc
Q 026092 187 FLRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI--NKVTGLALKHNY 241 (243)
Q Consensus 187 ~~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~--~~tCPlCR~~v~ 241 (243)
....+...+|++|.+.-.. .....+|+|+||.-||..=+.. ..+||.|..++.
T Consensus 233 ss~~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3455677899999876333 2334559999999999986653 469999988763
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.00087 Score=56.65 Aligned_cols=30 Identities=37% Similarity=0.826 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccH
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHS 220 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~ 220 (243)
....+|+|||+++..|+.+.+|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 345789999999999999999999999996
No 57
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0016 Score=55.90 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCee----EEeCCCCcccHHHHHHHHhc-----C------CCCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQ----MKLPCRHVYHSECITKWLGI-----N------KVTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v----~~LPC~H~FH~~CI~~WLk~-----~------~tCPlCR~~v~i 242 (243)
.....|.||..---.|... -...|+..||.-|+..||+. + ..||.|.+||.+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4456899997533333322 23349999999999999973 1 369999999854
No 58
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.42 E-value=0.0013 Score=50.34 Aligned_cols=33 Identities=27% Similarity=0.691 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHH
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECIT 224 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~ 224 (243)
.....|++|-..+.. ....+.||+|+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456789999999887 567789999999999985
No 59
>PHA02862 5L protein; Provisional
Probab=96.27 E-value=0.0029 Score=52.49 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=31.9
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc--CCCCCccCcccc
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI--NKVTGLALKHNY 241 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~--~~tCPlCR~~v~ 241 (243)
...|-||..+-.+...+-... --...|..|+.+|++. +..||+|+.+..
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 357999998743321000000 0357899999999974 458999998753
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.26 E-value=0.0012 Score=61.16 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|.+|.-=|-+.. .+.-|-|.||+.||.+.|...+.||.|...|
T Consensus 13 n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 45689999976655532 1223999999999999999999999997643
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0023 Score=60.90 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=34.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI 229 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~ 229 (243)
....|.||.+..........|||+|+||+.|+..++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 46799999999887788999999999999999999974
No 62
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.22 E-value=0.0066 Score=62.29 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC-C------CCCccCc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN-K------VTGLALK 238 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~-~------tCPlCR~ 238 (243)
....+|.||.+.++....+=... |-|+||..||.+|-+.. + .||-|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 35689999999988866544333 89999999999999742 1 6999983
No 63
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.19 E-value=0.004 Score=52.41 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCCeeEEeC--CCC---cccHHHHHHHHhcC--CCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP--CRH---VYHSECITKWLGIN--KVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP--C~H---~FH~~CI~~WLk~~--~tCPlCR~~v 240 (243)
.....|-||.++-.. ..-| |+. ..|.+|+.+|+..+ .+|++|+.+.
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 356799999887432 2246 555 66999999999754 5899999865
No 64
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.17 E-value=0.0018 Score=56.40 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=38.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|.||.++|+. ++...|||.||..|..+=++....|-+|-+..
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 479999999987 66677999999999999888889999998753
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0032 Score=59.08 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=39.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.++.-|+||...- -..+..||+|.-|..||.+-|...+.|=.|++.+.
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4567899997542 22456789999999999999999999999999875
No 66
>PHA03096 p28-like protein; Provisional
Probab=96.15 E-value=0.0025 Score=58.38 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=33.9
Q ss_pred cccccccccccCC----CeeEEeC-CCCcccHHHHHHHHhcC---CCCCccCc
Q 026092 194 ERCVICQMKYKRG----DRQMKLP-CRHVYHSECITKWLGIN---KVTGLALK 238 (243)
Q Consensus 194 ~~C~ICle~f~~g----e~v~~LP-C~H~FH~~CI~~WLk~~---~tCPlCR~ 238 (243)
..|.||++..... .....|+ |.|.|+..||..|-... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999987653 2356777 99999999999998643 35555554
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.13 E-value=0.0038 Score=42.49 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred cccccccccCCC-eeEEeCCCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 196 CVICQMKYKRGD-RQMKLPCRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 196 C~ICle~f~~ge-~v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
|++|.+++...+ ...-.+|++.+++.|..+-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999984433 333334999999999999886 57899999986
No 68
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.01 E-value=0.0038 Score=51.14 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCeeEEeCCC------CcccHHHHHHHHhcCCCCC
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCR------HVYHSECITKWLGINKVTG 234 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~------H~FH~~CI~~WLk~~~tCP 234 (243)
...+|.||++.+...+-++.++|+ |.||..|+.+|-+.++.=|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDP 73 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDP 73 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCC
Confidence 367999999999996667788875 7999999999954333333
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.77 E-value=0.0039 Score=43.57 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=33.2
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|..|.. .+.+-.++||+|+.+..|..-+ +-+.||+|-+++
T Consensus 7 ~~~~~~~~~---~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~ 49 (55)
T PF14447_consen 7 EQPCVFCGF---VGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPF 49 (55)
T ss_pred ceeEEEccc---cccccccccccceeeccccChh--hccCCCCCCCcc
Confidence 456666654 3445678999999999998875 678999999876
No 70
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0061 Score=57.12 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
--..|+||+.+.+. ..-+||||+-+ |+.-- +...+||+||+.|
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 44789999998777 77899999855 66543 2334599999876
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0033 Score=57.65 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=52.9
Q ss_pred cccCcCCCCCCHHHHHhhhhhcCCCCCCCC--HHHHhhCCceeeecCchhh---ccCCCcccccccccccCCCeeEEeCC
Q 026092 140 WQDNVDPDNMTYEELLDLGETVGTQSRGLS--QEQINLLPTSKYKFGNLFL---RKRSGERCVICQMKYKRGDRQMKLPC 214 (243)
Q Consensus 140 ~~~~id~D~mtyEeLl~L~e~vg~~~rGLs--~~~I~sLp~~~~k~~~~~~---~~~~~~~C~ICle~f~~ge~v~~LPC 214 (243)
..+..|.++++.-+|++.-..-+..-.|-. .+.+.+.. ..|+...... ......-|.||+..-.+ ...|+|
T Consensus 243 ~edl~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vt-rl~k~~~g~~~~~s~~~~~LC~ICmDaP~D---CvfLeC 318 (350)
T KOG4275|consen 243 LEDLLDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVT-RLYKGNDGEQHSRSLATRRLCAICMDAPRD---CVFLEC 318 (350)
T ss_pred cccccccccchHHHhhhhhhccCCcccchhHHHHHHHHHH-HHHhcccccccccchhHHHHHHHHhcCCcc---eEEeec
Confidence 344567788888888876544333333433 22222211 1222211111 11125679999987554 678999
Q ss_pred CCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 215 RHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 215 ~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
||. -|..|-+. -+.||+||+-|
T Consensus 319 GHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 319 GHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred CcEEeehhhccc----cccCchHHHHH
Confidence 994 45556544 35899999865
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0041 Score=57.01 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=39.2
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|-||...|.. .++..|+|.||..|..+=++....|++|.+.+
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhccccccCCcceeccccc
Confidence 459999999988 67778999999999999999999999998754
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.49 E-value=0.0059 Score=59.99 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=38.4
Q ss_pred cCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-----CCCCCccCccccc
Q 026092 190 KRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-----NKVTGLALKHNYI 242 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-----~~tCPlCR~~v~i 242 (243)
..++..|.+|-+.-++ .+...|.|.||+.||..+... +-+||+|...+-|
T Consensus 533 nk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3466899999875443 666779999999999888753 3499999887654
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.18 E-value=0.016 Score=53.48 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=35.5
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCccccc
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKHNYI 242 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~v~i 242 (243)
..|+.|..-+.. .+..| |+|.||..||..-|. ....||.|.+.-++
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 789999766544 44556 999999999998885 55799999875433
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.019 Score=51.71 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||...+........|. |||+|...|+.+.++.-..||+|-+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 4578999999999877777675 999999999999999999999998765
No 76
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.0017 Score=61.38 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCcccccccccccCC-CeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRG-DRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~g-e~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
-...|+||...++.. +++-.+-|+|.+|..||.+||.....||.||+.+
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel 244 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRREL 244 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhh
Confidence 357899999999875 5666667999999999999999999999999876
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.51 E-value=0.032 Score=52.47 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=38.7
Q ss_pred hccCCCcccccccccccCCCeeEEeCCCCcccHHHHHH--HHhcCCCCCccCccc
Q 026092 188 LRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITK--WLGINKVTGLALKHN 240 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~--WLk~~~tCPlCR~~v 240 (243)
...+++..|.||-....- ..++||+|..|..|.-+ -|-.++.||+||.+.
T Consensus 56 dtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 344567889999876544 66899999999999865 344678999999864
No 78
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.014 Score=54.01 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=31.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.-.|.-|-..+..- -+.+||+|+||.+|... ..-|.||.|-.+|
T Consensus 90 VHfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 34576775554442 35678999999999865 3467999998765
No 79
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.20 E-value=0.024 Score=37.49 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=22.2
Q ss_pred cccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC--CCCcc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK--VTGLA 236 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~--tCPlC 236 (243)
|.+|.+-...|..-..-.|+=.+|..|+..+++..+ .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 566666555543333233888999999999998765 79988
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.00 E-value=0.061 Score=48.44 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=39.3
Q ss_pred cCCCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 190 KRSGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
......|+|...+|......+.| ||||+|-..+|..- +....||+|-.+.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f 160 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPF 160 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcc
Confidence 34568999999999665555444 79999999999997 3456899998763
No 81
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.86 E-value=0.066 Score=37.34 Aligned_cols=34 Identities=38% Similarity=0.898 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITK 225 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~ 225 (243)
....|.+|-+.|+.++.+++.| |+-.+|+.|..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3578999999999999999999 999999999765
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.072 Score=49.67 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||+..... ...|. -|-+||..||-+.++..+.||+=-.|+
T Consensus 299 ~~~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCC---CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45789999987554 23333 599999999999999999999855544
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.055 Score=55.81 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=30.9
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
..|.+|--.+... .+-..|+|.||..|+. .....||-|+..
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5899997765441 2333499999999999 566799999863
No 84
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.087 Score=50.13 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC---CCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN---KVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~---~tCPlCR~~ 239 (243)
+...|+|=.+.-.+.+.++.|.|||+..+.-|.+-.+.. ..||.|=..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 457899999988888999999999999999999987654 479999543
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.52 E-value=0.05 Score=55.42 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=35.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC--CCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN--KVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~--~tCPlCR~~v 240 (243)
..|.||++ .+.....+|+|.||..|+.+-+... ..||+||..+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 79999998 4557778899999999999988643 4699999754
No 86
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.43 E-value=0.071 Score=48.72 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=38.6
Q ss_pred CcccccccccccCCCe-eEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMKYKRGDR-QMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~-v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
...|+||.+.+-.+.. +..++|+|.-|..|...-...+=+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4559999998777554 667889999999999988877789999988
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=0.084 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.529 Sum_probs=30.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG 228 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk 228 (243)
...+.|.+|...+... ...+.||||.||+.||.+-..
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 4678999999877664 567789999999999987553
No 88
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.54 E-value=0.11 Score=48.76 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCCe-eEEeCCCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 191 RSGERCVICQMKYKRGDR-QMKLPCRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~-v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
.+++.|+.|++.+...++ ..-+|||-..|+-|...--. .+..||-||+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 345679999999887665 44567999888888766432 46799999984
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.30 E-value=0.14 Score=48.40 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHhcC-------------CCCCccCccccc
Q 026092 214 CRHVYHSECITKWLGIN-------------KVTGLALKHNYI 242 (243)
Q Consensus 214 C~H~FH~~CI~~WLk~~-------------~tCPlCR~~v~i 242 (243)
|.-.+|.+|+.+|+..+ -+||.||++-=|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 78899999999999532 379999997533
No 90
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=0.095 Score=47.44 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=36.3
Q ss_pred CCCcccccccccccCCCee-EEeCC-----CCcccHHHHHHHHhcCC--------CCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQ-MKLPC-----RHVYHSECITKWLGINK--------VTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v-~~LPC-----~H~FH~~CI~~WLk~~~--------tCPlCR~~v~i 242 (243)
+.+..|=||+..=++...- =+=|| .|=.|..|+..|+..+. +||.|+++..|
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 4567888998775543322 12354 37789999999996442 69999998765
No 91
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.58 E-value=0.14 Score=46.07 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=35.9
Q ss_pred CcccccccccccCCCe-eEEeCCC-----CcccHHHHHHHHh--cCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDR-QMKLPCR-----HVYHSECITKWLG--INKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~-v~~LPC~-----H~FH~~CI~~WLk--~~~tCPlCR~~v 240 (243)
...|-||..+...... ....||. ...|+.|+.+|+. .+..|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 5789999987665332 4566753 4779999999997 456899998743
No 92
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.33 E-value=0.22 Score=46.06 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCeeEEeCC--CCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPC--RHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC--~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...+|+||...+.. .+..| ||+-|..|-. +..+.||.||.++
T Consensus 47 ~lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP----PIFQCDNGHLACSSCRT---KVSNKCPTCRLPI 90 (299)
T ss_pred hhccCchhhccCcc----cceecCCCcEehhhhhh---hhcccCCcccccc
Confidence 45799999987665 23446 7888888876 4678999999876
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.80 E-value=0.25 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=22.9
Q ss_pred EEeCCCCcccHHHHHHHHhcCCCCCc
Q 026092 210 MKLPCRHVYHSECITKWLGINKVTGL 235 (243)
Q Consensus 210 ~~LPC~H~FH~~CI~~WLk~~~tCPl 235 (243)
.-..|+|+-|.+|...|++....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 33459999999999999999999995
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=0.26 Score=43.21 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=27.3
Q ss_pred cccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 196 CVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 196 C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
|-+|.+ .+-.+..|||.|+ +|..|-.. -+.||+|+.+.
T Consensus 161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChh
Confidence 777755 4455899999985 55557654 35699999764
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.88 E-value=0.18 Score=54.25 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
.....|.||+....... .+.-|+|.++..|+..|+..+..||.|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34568999998877422 23449999999999999999999999974
No 96
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=0.29 Score=45.20 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCCccCccccc
Q 026092 214 CRHVYHSECITKWLG-------------INKVTGLALKHNYI 242 (243)
Q Consensus 214 C~H~FH~~CI~~WLk-------------~~~tCPlCR~~v~i 242 (243)
|.-.+|.+|+.+|+. .+-+||+||+..-|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 788999999999985 23489999997544
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.52 E-value=0.5 Score=38.84 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCcccccccccccCCCeeEEeC---CCCcccHHHHHHHHh---cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP---CRHVYHSECITKWLG---INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP---C~H~FH~~CI~~WLk---~~~tCPlCR~~ 239 (243)
...+|.||.+...+..-+ =| ||-..|..|-.+-++ ...+||+|+++
T Consensus 79 ~lYeCnIC~etS~ee~FL--KPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTS 130 (140)
T PF05290_consen 79 KLYECNICKETSAEERFL--KPNECCGYSICNACYANLWKFCNLYPVCPVCKTS 130 (140)
T ss_pred CceeccCcccccchhhcC--CcccccchHHHHHHHHHHHHHcccCCCCCccccc
Confidence 568999999986663322 13 999999998776665 45799999975
No 98
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.63 E-value=0.49 Score=46.94 Aligned_cols=43 Identities=28% Similarity=0.629 Sum_probs=36.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|.||+.+. ..+..+|. |..|+.+|+..+.+||+|++.+
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 3567899999987 45666788 8999999999999999998754
No 99
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=0.47 Score=45.28 Aligned_cols=39 Identities=23% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCcccccccccccCC-CeeEEeCCCCcccHHHHHHHHhcC
Q 026092 192 SGERCVICQMKYKRG-DRQMKLPCRHVYHSECITKWLGIN 230 (243)
Q Consensus 192 ~~~~C~ICle~f~~g-e~v~~LPC~H~FH~~CI~~WLk~~ 230 (243)
....|.||..+.... .....+.|+|.||..|+.+-+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 457999999444443 344456699999999999988744
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.88 E-value=0.63 Score=31.71 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=25.2
Q ss_pred ccccccccccCCCeeEEeCC-CCcccHHHHHHHHhcCCCCCccCccc
Q 026092 195 RCVICQMKYKRGDRQMKLPC-RHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC-~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.|--|.-..+. .+.| .|..+..|+..-|++...||+|..++
T Consensus 4 nCKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp ---SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred cChhhhhcCCC-----eeeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 45566644333 3447 59999999999999999999999876
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.79 E-value=1.1 Score=46.50 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=35.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCC-----cccHHHHHHHHhc--CCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRH-----VYHSECITKWLGI--NKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H-----~FH~~CI~~WLk~--~~tCPlCR~~v 240 (243)
++...|.||..+=.+++. .-=||+. ..|.+|+..|+.- .+.|-+|..+.
T Consensus 10 ~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 345899999987555443 3356654 6899999999974 46899998754
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.69 E-value=1.2 Score=46.14 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCcccccccccccC-CCeeEEeC---CCCcccHHHHHHHHhc------CCCCCccCcc
Q 026092 192 SGERCVICQMKYKR-GDRQMKLP---CRHVYHSECITKWLGI------NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~-ge~v~~LP---C~H~FH~~CI~~WLk~------~~tCPlCR~~ 239 (243)
....|.||..++.. .+....+| |.|.||..||..|+.. +-.|++|..-
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 44667777776665 33345566 9999999999999963 2367888653
No 103
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=80.01 E-value=0.91 Score=41.36 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=36.2
Q ss_pred Ccccccccccc-cCCCeeEEeC---CCCcccHHHHHHHHh---------cCCCCCccCccc
Q 026092 193 GERCVICQMKY-KRGDRQMKLP---CRHVYHSECITKWLG---------INKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f-~~ge~v~~LP---C~H~FH~~CI~~WLk---------~~~tCPlCR~~v 240 (243)
...|-||..++ +.+......| |.-++|..|+..-+. ....||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36899999999 5555555555 999999999999553 235899999843
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.06 E-value=1.8 Score=44.62 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=29.6
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCc
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGL 235 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPl 235 (243)
..|.+|-..+.. .....+ |+|.=|..|+.+|+...+.||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 478888654333 233344 9999999999999998887765
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.09 E-value=1.2 Score=40.13 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCe--eEEeC-CCCcccHHHHHHHHhcC-CCCC--ccCc
Q 026092 192 SGERCVICQMKYKRGDR--QMKLP-CRHVYHSECITKWLGIN-KVTG--LALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~--v~~LP-C~H~FH~~CI~~WLk~~-~tCP--lCR~ 238 (243)
....|+||..+.-..-. +.+-| |-|..|.+|+++-|... ..|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 35689999987544333 33446 99999999999999765 5899 5643
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.79 E-value=0.61 Score=47.50 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=36.8
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC---CCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN---KVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~---~tCPlCR~~v 240 (243)
..+|+||+..+.+. ..+.|-|.|+..|+..-|... +.||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 47999999998884 567799999999999877544 5899998643
No 107
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.75 E-value=1.6 Score=37.96 Aligned_cols=40 Identities=30% Similarity=0.738 Sum_probs=29.2
Q ss_pred Cccccccccc-----ccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMK-----YKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~-----f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
+..|-||-.+ |.. +.+.+.+ |+-+||+.|..+ +.||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 5788888753 222 2455666 999999999883 77999965
No 108
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.47 E-value=0.8 Score=46.41 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=30.2
Q ss_pred CcccccccccccCCCe-eEEeCCCCcccHHHHHHHHhcCCCCC
Q 026092 193 GERCVICQMKYKRGDR-QMKLPCRHVYHSECITKWLGINKVTG 234 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~-v~~LPC~H~FH~~CI~~WLk~~~tCP 234 (243)
..-|.||+..|-.... .+.|-|||..|..|+..- .+.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC
Confidence 4679999888876443 445559999999999986 455666
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.69 E-value=1.5 Score=42.50 Aligned_cols=38 Identities=29% Similarity=0.677 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN 230 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~ 230 (243)
.....|.||.+.+.. ....+.|+|.|+..|+...|+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 345799999998776 56677899999999999999743
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.87 E-value=1.2 Score=45.92 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCcccccccccccCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCcc
Q 026092 192 SGERCVICQMKYKRG----DRQMKLPCRHVYHSECITKWLGINKVTGLA 236 (243)
Q Consensus 192 ~~~~C~ICle~f~~g----e~v~~LPC~H~FH~~CI~~WLk~~~tCPlC 236 (243)
-+..|..|.+..-.. +.+.++-|+|.||..|+..-+.+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 346899998776532 3577788999999999998776555 5444
No 111
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.24 E-value=1.1 Score=45.02 Aligned_cols=42 Identities=19% Similarity=0.532 Sum_probs=25.7
Q ss_pred Cccccccccc-----ccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMK-----YKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~-----f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
...|.||... |+ .+.+++.. |+++||..|+.. .+.-||-|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 3567777332 22 22233343 999999999765 3344999953
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.62 E-value=2 Score=41.09 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=34.2
Q ss_pred CCcccccccccccC--CCeeEEeCCCCcccHHHHHHHHhcCCCCCcc
Q 026092 192 SGERCVICQMKYKR--GDRQMKLPCRHVYHSECITKWLGINKVTGLA 236 (243)
Q Consensus 192 ~~~~C~ICle~f~~--ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlC 236 (243)
.-..|++|.-.+.. |-..+...|+|.|+..|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 35789999876544 4445566699999999999998888877554
No 113
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.19 E-value=2 Score=38.00 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=32.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccC
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
...|.+|.+-.--+ ++-=.|+-.+|..|+...+.+...||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 46899997643221 22223888999999999999999999993
No 114
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.22 E-value=5.7 Score=26.87 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=18.1
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC-----CCCCccCcc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN-----KVTGLALKH 239 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~-----~tCPlCR~~ 239 (243)
..|+|....++. .++...|.|.-+- =+..||..+ -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 357777665544 3444459997321 134566532 269999875
No 115
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.44 E-value=3.9 Score=38.34 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc---CCCCCccC
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI---NKVTGLAL 237 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~---~~tCPlCR 237 (243)
....|++-.+.-.+.+.++.|.|||+.-..-+++.-+. ...||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 45689988887777788899999999999998886553 24799994
No 116
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.91 E-value=5.1 Score=37.54 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.7
Q ss_pred cccccccccccCCCe-eEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDR-QMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~-v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|+||-+.....+. ..-.||++..|..|...-...+..||.||++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 689999987644332 23344888888888888888889999999864
No 117
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.88 E-value=8.4 Score=35.09 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+|=-.++...-+...| +|||+|-..-+.+. ..++|++|.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y 157 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAY 157 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcc
Confidence 346799887777765554444 59999998777764 367999998753
No 119
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.75 E-value=8.1 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred cccccccccCCC------eeEEeC-CCCcccHHHHHHHHhcCCCCCccC
Q 026092 196 CVICQMKYKRGD------RQMKLP-CRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 196 C~ICle~f~~ge------~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
|--|+..|..+. .....| |++.|+.+|=.--=.+-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556777776642 345566 999999998433212335788874
No 120
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=59.18 E-value=4.2 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG 228 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk 228 (243)
.....|.+|...|..-..-.... ||++|+..|......
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 34679999999997754444444 999999999876553
No 121
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=58.26 E-value=7.2 Score=23.47 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=23.0
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 195 RCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.|..|...+..++.... .=+..||..|+ .|..|++++
T Consensus 1 ~C~~C~~~i~~~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-ALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEE-eCCccccccCC--------CCcccCCcC
Confidence 37778877766533322 24677887664 477777665
No 123
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=57.67 E-value=6.2 Score=28.66 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.5
Q ss_pred ccHHHHHHHHh
Q 026092 218 YHSECITKWLG 228 (243)
Q Consensus 218 FH~~CI~~WLk 228 (243)
||+.|+.+|++
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 124
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=55.71 E-value=6.5 Score=24.88 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=16.7
Q ss_pred cccccccccccCCCe-------eEEeC-CCCccc
Q 026092 194 ERCVICQMKYKRGDR-------QMKLP-CRHVYH 219 (243)
Q Consensus 194 ~~C~ICle~f~~ge~-------v~~LP-C~H~FH 219 (243)
..|+-|...|+..+. ..+.| |+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888876443 33344 788775
No 125
>PLN02189 cellulose synthase
Probab=55.21 E-value=12 Score=40.12 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred CCccccccccccc---CCCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 192 SGERCVICQMKYK---RGDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~---~ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
....|-||.++.. .|+..+.+. |+-..|+.|..-=-+ .++.||.|+++
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 4579999999875 456566666 999999999953322 35799999975
No 126
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.82 E-value=4 Score=39.21 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCcccccccccccCC-----------CeeEEeCCCCcccHHHHHHHHhc------CCCCCccCcc
Q 026092 192 SGERCVICQMKYKRG-----------DRQMKLPCRHVYHSECITKWLGI------NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~g-----------e~v~~LPC~H~FH~~CI~~WLk~------~~tCPlCR~~ 239 (243)
..-.|++=|..+... ..-+-|.|||++.. ..|-.. ..+||+||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCcccc
Confidence 445787777665431 12344569999874 677642 4589999975
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=54.00 E-value=13 Score=37.97 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=26.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccH--HHHHH-HHh-cC-----CCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHS--ECITK-WLG-IN-----KVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~--~CI~~-WLk-~~-----~tCPlCR~~v 240 (243)
..|+|+.. .+.+||++..|+ .|.+. |+- .+ -.||+|.+..
T Consensus 307 L~CPl~~~-------Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 307 LNCPLSKM-------RMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred ecCCcccc-------eeecCCcccccccceecchhhhHHhccCCCeeeCccCCccc
Confidence 45666644 467788777777 68884 332 11 1799998865
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.47 E-value=7 Score=25.71 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=28.1
Q ss_pred ccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc------CCCCCccCc
Q 026092 195 RCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI------NKVTGLALK 238 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~------~~tCPlCR~ 238 (243)
.|.||...- ..+.++.-. |...||..|+..=.+. .-.||.|+.
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 488998833 333344444 9999999999865431 237888763
No 129
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.26 E-value=4.6 Score=27.49 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=5.2
Q ss_pred CCCCccCccc
Q 026092 231 KVTGLALKHN 240 (243)
Q Consensus 231 ~tCPlCR~~v 240 (243)
..||+|.+++
T Consensus 21 ~~CPlC~r~l 30 (54)
T PF04423_consen 21 GCCPLCGRPL 30 (54)
T ss_dssp EE-TTT--EE
T ss_pred CcCCCCCCCC
Confidence 3899998865
No 130
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.13 E-value=7.4 Score=35.39 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=28.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHh
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG 228 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk 228 (243)
-..|+.||..+.+ +++.|=||+|++.||..++.
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHH
Confidence 4689999998877 77888999999999998874
No 131
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.53 E-value=1.1 Score=32.79 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=20.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccccC
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNYIL 243 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~il 243 (243)
..|+.|..++.... +|.++..|-.. ++....||-|..++-+|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHHHH
Confidence 46888877654432 44444445443 34556788888887654
No 132
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=50.39 E-value=11 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.513 Sum_probs=27.1
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG 228 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk 228 (243)
...|.+|...|.......... ||++|+..|......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 357999998888754333333 999999999987765
No 133
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=50.34 E-value=12 Score=29.84 Aligned_cols=19 Identities=21% Similarity=0.034 Sum_probs=14.4
Q ss_pred HHHHhcCCCCCccCccccc
Q 026092 224 TKWLGINKVTGLALKHNYI 242 (243)
Q Consensus 224 ~~WLk~~~tCPlCR~~v~i 242 (243)
.+-|.+...|+.|++|+.+
T Consensus 79 TKmLGr~D~CM~C~~pLTL 97 (114)
T PF11023_consen 79 TKMLGRVDACMHCKEPLTL 97 (114)
T ss_pred HhhhchhhccCcCCCcCcc
Confidence 5556667789999998854
No 134
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.63 E-value=2.9 Score=34.61 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCCccccccccc-ccCCCeeEEeCCCCcccHHHHHHHH-hcCC---CCCccCcccccC
Q 026092 191 RSGERCVICQMK-YKRGDRQMKLPCRHVYHSECITKWL-GINK---VTGLALKHNYIL 243 (243)
Q Consensus 191 ~~~~~C~ICle~-f~~ge~v~~LPC~H~FH~~CI~~WL-k~~~---tCPlCR~~v~il 243 (243)
.....|.||+.. |.+|---.---|.-.||..|--+-- ++++ .|-+|++.+-||
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il 120 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEIL 120 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHH
Confidence 356799999875 3332111111144456666655433 3344 699999877664
No 135
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.40 E-value=34 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=31.2
Q ss_pred cccccccccccCCC-eeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGD-RQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge-~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
-.|-.|-.++.... ..++..=...|+..|.+.-| +..||-|...+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcc
Confidence 35667777776655 23332223479999999976 78999998765
No 136
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=45.34 E-value=10 Score=26.93 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.5
Q ss_pred HHHhcC------CCCCccCccc
Q 026092 225 KWLGIN------KVTGLALKHN 240 (243)
Q Consensus 225 ~WLk~~------~tCPlCR~~v 240 (243)
-|++.+ .+||+|..+.
T Consensus 28 gWmR~nFs~~~~p~CPlC~s~M 49 (59)
T PF14169_consen 28 GWMRDNFSFEEEPVCPLCKSPM 49 (59)
T ss_pred cccccccccCCCccCCCcCCcc
Confidence 466643 5899999865
No 137
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.20 E-value=24 Score=26.49 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCcccccccccccC---CCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKR---GDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~---ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
....|-||-++... |+..+..- |+-..++.|..-=.+ .++.||.|+++
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 45789999988765 33333232 888999999986554 46799999975
No 138
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.98 E-value=25 Score=28.13 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=34.3
Q ss_pred CcccccccccccCCC----------eeEEeC-CCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMKYKRGD----------RQMKLP-CRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge----------~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
...|--|+..|.... .....+ |++.|+.+|=.-+-..-..||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999887531 123344 9999999998887777778999964
No 139
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=44.81 E-value=13 Score=23.41 Aligned_cols=25 Identities=36% Similarity=0.863 Sum_probs=15.0
Q ss_pred ccccccccccCCCe-------eEEeC-CCCccc
Q 026092 195 RCVICQMKYKRGDR-------QMKLP-CRHVYH 219 (243)
Q Consensus 195 ~C~ICle~f~~ge~-------v~~LP-C~H~FH 219 (243)
.|+=|...|...+. ..+.+ |+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778777766443 12233 777774
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.52 E-value=3.9 Score=36.97 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=37.6
Q ss_pred CcccccccccccCC---CeeEEeC--------CCCcccHHHHHHHHhcC-CCCCccCcc
Q 026092 193 GERCVICQMKYKRG---DRQMKLP--------CRHVYHSECITKWLGIN-KVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~g---e~v~~LP--------C~H~FH~~CI~~WLk~~-~tCPlCR~~ 239 (243)
...|.||...+... ...+++. |+|..+..|+..-+... -.||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 36799999999842 2356667 99999999999998655 589999874
No 141
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=44.52 E-value=21 Score=27.16 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
....|.-|...++--+.+. |-.||..+..|..|++++-
T Consensus 32 ~rS~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CCCcCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCC
Confidence 3578999998888766665 6799999999999999874
No 142
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.22 E-value=24 Score=38.11 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCcccccccccccC---CCeeEEeC-CCCcccHHHHHHHHh--cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKR---GDRQMKLP-CRHVYHSECITKWLG--INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~---ge~v~~LP-C~H~FH~~CI~~WLk--~~~tCPlCR~~ 239 (243)
....|-||-.+... |+..+.+. |+--.|+.|.. .=+ .++.||.|++.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCc
Confidence 45699999998754 55555454 99999999994 332 45799999975
No 143
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.76 E-value=22 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=32.9
Q ss_pred CCcccccccccccC-----CC-----------eeEEeCCCCcccHHHHHHHHhc---------CCCCCccCccc
Q 026092 192 SGERCVICQMKYKR-----GD-----------RQMKLPCRHVYHSECITKWLGI---------NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~-----ge-----------~v~~LPC~H~FH~~CI~~WLk~---------~~tCPlCR~~v 240 (243)
.+.+|+||+..=.- |. .-.--||||+--..-..=|-+. +..||.|-+.+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 36789999864211 11 1123469999888888888764 24799997754
No 144
>PLN02436 cellulose synthase A
Probab=40.43 E-value=30 Score=37.47 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCccccccccccc---CCCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 192 SGERCVICQMKYK---RGDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~---~ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
....|-||-.+.. +|+..+-+. |+-..|+.|..-=-+ .++.||.|+++
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 4569999999864 466666666 999999999954332 35799999975
No 145
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=39.82 E-value=13 Score=32.65 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=15.2
Q ss_pred HHHHHHHHh-cCCCCCccCcccccC
Q 026092 220 SECITKWLG-INKVTGLALKHNYIL 243 (243)
Q Consensus 220 ~~CI~~WLk-~~~tCPlCR~~v~il 243 (243)
+.||.+-=. ..+.||+||..-++|
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~ 121 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYF 121 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEE
Confidence 457766432 356799998876543
No 146
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.22 E-value=16 Score=21.57 Aligned_cols=11 Identities=9% Similarity=-0.327 Sum_probs=7.3
Q ss_pred CCCCccCcccc
Q 026092 231 KVTGLALKHNY 241 (243)
Q Consensus 231 ~tCPlCR~~v~ 241 (243)
++||-|++.|.
T Consensus 1 K~CP~C~~~V~ 11 (26)
T PF10571_consen 1 KTCPECGAEVP 11 (26)
T ss_pred CcCCCCcCCch
Confidence 46777777663
No 147
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=39.02 E-value=15 Score=33.25 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=30.7
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc--CCCCCc--cCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI--NKVTGL--ALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~--~~tCPl--CR~~v 240 (243)
..+|+|=+..+.- .+....|.|.|-++-|.+.|.. -..||. |.+.+
T Consensus 189 ~nrCpitl~p~~~--pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~ 238 (275)
T COG5627 189 SNRCPITLNPDFY--PILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE 238 (275)
T ss_pred cccCCcccCcchh--HHHHhhhcccccHHHHHHHhcCCceeecchhhcchhe
Confidence 4679985544322 1223339999999999999984 457884 75544
No 148
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.50 E-value=25 Score=21.52 Aligned_cols=11 Identities=9% Similarity=-0.224 Sum_probs=7.4
Q ss_pred cCCCCCccCcc
Q 026092 229 INKVTGLALKH 239 (243)
Q Consensus 229 ~~~tCPlCR~~ 239 (243)
....||+|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34478888764
No 149
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=37.11 E-value=24 Score=33.31 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~ 239 (243)
....|-.|..+.......+--.|+++||..|=.--=.+-..||-|...
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 345699997777666655544499999999955433445689999743
No 150
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=34.81 E-value=23 Score=23.99 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=13.1
Q ss_pred CCCcccHHHHHHHHhcCCCCCcc
Q 026092 214 CRHVYHSECITKWLGINKVTGLA 236 (243)
Q Consensus 214 C~H~FH~~CI~~WLk~~~tCPlC 236 (243)
|+|.|-..=-.+ ......||.|
T Consensus 34 Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhh-ccCCCCCCCC
Confidence 666665432222 2566789988
No 151
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.76 E-value=4.1 Score=37.10 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=18.3
Q ss_pred CcccccccccccC-----CC--eeEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMKYKR-----GD--RQMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~-----ge--~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
...|+||-..-.. ++ -. +|.+|.-|-..|--....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~-----R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGK-----RYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------E-----EEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCcc-----EEEEcCCCCCeeeecCCCCcCCCC
Confidence 4699999765322 11 12 345666688888777889999965
No 152
>PLN02400 cellulose synthase
Probab=34.60 E-value=31 Score=37.31 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCcccccccccccC---CCeeEEeC-CCCcccHHHHHHHH-hcCCCCCccCcc
Q 026092 192 SGERCVICQMKYKR---GDRQMKLP-CRHVYHSECITKWL-GINKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~---ge~v~~LP-C~H~FH~~CI~~WL-k~~~tCPlCR~~ 239 (243)
....|-||-.+... |+..+.+- |+-..|+.|..==- ..++.||.|++.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCc
Confidence 45799999998754 55444444 89999999994211 235799999975
No 153
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=33.10 E-value=33 Score=20.34 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=9.8
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHHH
Q 026092 195 RCVICQMKYKRGDRQMKLPCRHVYHSECI 223 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~H~FH~~CI 223 (243)
.|.+|......+-...=..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888877655222333348889999886
No 154
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=32.89 E-value=7.6 Score=35.83 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=30.7
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN 230 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~ 230 (243)
...|.+|..++..+.......|.-+||..|+-.|++..
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 45999999999876666666666699999999999754
No 155
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.05 E-value=24 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCcccccccccccCC-CeeEEeC-CCCcccHHHHHHHHhcCC--CCCccCc
Q 026092 192 SGERCVICQMKYKRG-DRQMKLP-CRHVYHSECITKWLGINK--VTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~g-e~v~~LP-C~H~FH~~CI~~WLk~~~--tCPlCR~ 238 (243)
....|.+|...|..- ..-.... |+|.+|..|-.. ..... .|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567999999887542 2223444 999999998766 11112 4777765
No 156
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=31.95 E-value=46 Score=25.38 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=21.6
Q ss_pred CcccccccccccCCCeeEEeC--CCCcccHHHHHHH
Q 026092 193 GERCVICQMKYKRGDRQMKLP--CRHVYHSECITKW 226 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP--C~H~FH~~CI~~W 226 (243)
...|.||... .|-.+.--- |...||..|..+.
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 5799999886 222222111 8889999999763
No 157
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.34 E-value=24 Score=32.87 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=27.6
Q ss_pred CCcccccccccccC-------CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 192 SGERCVICQMKYKR-------GDRQMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~-------ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
....|+||-..-.. .+..+.| +|.-|-..|--..-.||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL-----~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYL-----HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEE-----EcCCCCCcccccCccCCCCCC
Confidence 35789999865321 1223434 445577888777889999975
No 158
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.28 E-value=51 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.4
Q ss_pred CCcccHHHHHHHHhcC---------CCCCccCc
Q 026092 215 RHVYHSECITKWLGIN---------KVTGLALK 238 (243)
Q Consensus 215 ~H~FH~~CI~~WLk~~---------~tCPlCR~ 238 (243)
.=.|+..||..+...+ -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 7789999999988642 37999986
No 159
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.25 E-value=53 Score=25.61 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=30.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI 229 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~ 229 (243)
.-.|.||-.....|++..-.+ +-..|.+|+..=.+.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 468999999999999998888 777899999875543
No 160
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.00 E-value=26 Score=27.13 Aligned_cols=12 Identities=17% Similarity=0.877 Sum_probs=10.6
Q ss_pred ccHHHHHHHHhc
Q 026092 218 YHSECITKWLGI 229 (243)
Q Consensus 218 FH~~CI~~WLk~ 229 (243)
||+.|+.+|.+.
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 899999999973
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.76 E-value=26 Score=36.62 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.3
Q ss_pred CCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 214 CRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 214 C~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
|+|.-|..=|.+ .+.||+|...+
T Consensus 1162 CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1162 CKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cccccccccccc----cccCccccChh
Confidence 999888776655 58999998765
No 162
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=23 Score=25.25 Aligned_cols=11 Identities=0% Similarity=-0.263 Sum_probs=8.6
Q ss_pred CCCccCccccc
Q 026092 232 VTGLALKHNYI 242 (243)
Q Consensus 232 tCPlCR~~v~i 242 (243)
.||+||.++.+
T Consensus 10 aCP~~kg~L~~ 20 (60)
T COG2835 10 ACPVCKGPLVY 20 (60)
T ss_pred eccCcCCcceE
Confidence 59999998654
No 163
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.62 E-value=33 Score=31.87 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=29.4
Q ss_pred CcccccccccccCCCeeEEeC--CCCcccHHHHHHHHhcC
Q 026092 193 GERCVICQMKYKRGDRQMKLP--CRHVYHSECITKWLGIN 230 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP--C~H~FH~~CI~~WLk~~ 230 (243)
-..|.+|.+.+++...+ .+| =.|.||..|-..-.|.+
T Consensus 268 pLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 36899999998885543 455 48999999999988864
No 164
>PRK05978 hypothetical protein; Provisional
Probab=29.40 E-value=27 Score=29.22 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=21.8
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|+-|.+ ++.|+ .+||.+..||.|-.+.
T Consensus 34 grCP~CG~-------------G~LF~-----g~Lkv~~~C~~CG~~~ 62 (148)
T PRK05978 34 GRCPACGE-------------GKLFR-----AFLKPVDHCAACGEDF 62 (148)
T ss_pred CcCCCCCC-------------Ccccc-----cccccCCCccccCCcc
Confidence 56777754 45665 7899999999997754
No 165
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.22 E-value=26 Score=20.48 Aligned_cols=9 Identities=0% Similarity=0.062 Sum_probs=6.3
Q ss_pred CCCccCccc
Q 026092 232 VTGLALKHN 240 (243)
Q Consensus 232 tCPlCR~~v 240 (243)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887654
No 166
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.20 E-value=59 Score=35.19 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=35.4
Q ss_pred CCcccccccccccC---CCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKR---GDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~---ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~ 239 (243)
....|-||-++... |+..+.+. |+-..|+.|..-=.+ .++.||.|+++
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 56899999988754 55444444 999999999953322 35799999875
No 167
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=29.06 E-value=23 Score=23.53 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=8.4
Q ss_pred CcccccccccccCCC
Q 026092 193 GERCVICQMKYKRGD 207 (243)
Q Consensus 193 ~~~C~ICle~f~~ge 207 (243)
-..|..|...+..+.
T Consensus 26 Cf~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 26 CFKCSKCGKPLNDGD 40 (58)
T ss_dssp TSBETTTTCBTTTSS
T ss_pred ccccCCCCCccCCCe
Confidence 355666666655544
No 168
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=28.87 E-value=27 Score=35.22 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=24.4
Q ss_pred CCCcccccccccccC---CC-------eeEEeCCCCcccHHHHHH
Q 026092 191 RSGERCVICQMKYKR---GD-------RQMKLPCRHVYHSECITK 225 (243)
Q Consensus 191 ~~~~~C~ICle~f~~---ge-------~v~~LPC~H~FH~~CI~~ 225 (243)
+....|+||.+.|+. .+ ..+.+-=|-+||..|+..
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e 555 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSE 555 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccch
Confidence 355789999999976 11 122333588999999874
No 169
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=28.64 E-value=20 Score=39.98 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=39.5
Q ss_pred hccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC----CCCccCcc
Q 026092 188 LRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK----VTGLALKH 239 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~----tCPlCR~~ 239 (243)
........|-||+........+.-.-|--.||.-|+..-+..-. .||-||..
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 34456788999998877754444444999999999999887543 89999874
No 170
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=21 Score=33.34 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|-||...+......- -|.|.|+..|...|....+.||.||..+
T Consensus 104 ~~~~~~~~~g~l~vpt~~q--g~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQ--GCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEeccccc--CceeeeeecCCchhhhhhhccchhhcCc
Confidence 4567888877654422111 1999999999999999999999988643
No 171
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.97 E-value=56 Score=30.85 Aligned_cols=45 Identities=2% Similarity=-0.109 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCeeEEeCCCC-cccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRH-VYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H-~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
...+|-.|-+.... ..+.+|+| .|+..|.. +.-..+||+|-..++
T Consensus 342 s~~~~~~~~~~~~s---t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCceee---eEeecCCcccChhhhhh--cccCCccccccccce
Confidence 34678888654333 56667998 78888988 667789999987553
No 172
>PRK11827 hypothetical protein; Provisional
Probab=25.12 E-value=25 Score=25.00 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=12.8
Q ss_pred HHHHhcCCCCCccCcccc
Q 026092 224 TKWLGINKVTGLALKHNY 241 (243)
Q Consensus 224 ~~WLk~~~tCPlCR~~v~ 241 (243)
++||..--.||+|+.++.
T Consensus 2 d~~LLeILaCP~ckg~L~ 19 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLW 19 (60)
T ss_pred ChHHHhheECCCCCCcCe
Confidence 456666668999988764
No 173
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=24.60 E-value=32 Score=29.21 Aligned_cols=10 Identities=10% Similarity=-0.154 Sum_probs=8.1
Q ss_pred CCCccCcccc
Q 026092 232 VTGLALKHNY 241 (243)
Q Consensus 232 tCPlCR~~v~ 241 (243)
.||+||..|.
T Consensus 82 ~CPLCRG~V~ 91 (162)
T PF07800_consen 82 ACPLCRGEVK 91 (162)
T ss_pred cCccccCcee
Confidence 6999998773
No 174
>PRK01343 zinc-binding protein; Provisional
Probab=24.29 E-value=42 Score=23.66 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=7.7
Q ss_pred CCCCCccCccc
Q 026092 230 NKVTGLALKHN 240 (243)
Q Consensus 230 ~~tCPlCR~~v 240 (243)
...||+|++++
T Consensus 9 ~~~CP~C~k~~ 19 (57)
T PRK01343 9 TRPCPECGKPS 19 (57)
T ss_pred CCcCCCCCCcC
Confidence 35688888764
No 175
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.65 E-value=72 Score=25.04 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHH
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWL 227 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WL 227 (243)
-.|.||-.++-.|+....++= =..|..|+..=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 369999999999987776654 668999998644
No 176
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.51 E-value=55 Score=29.86 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC--CCCCc--cCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN--KVTGL--ALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~--~tCPl--CR~~ 239 (243)
...|+|=...+.. .++.-.|+|+|-+.=|.+.+... -.||+ |-.+
T Consensus 176 s~rdPis~~~I~n--PviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~ 224 (262)
T KOG2979|consen 176 SNRDPISKKPIVN--PVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENP 224 (262)
T ss_pred cccCchhhhhhhc--hhhhcCcCcchhhhhHHHHhccCceeecccccCCcc
Confidence 3568876554443 23444499999999999999764 46887 6533
No 177
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.04 E-value=24 Score=23.83 Aligned_cols=21 Identities=24% Similarity=0.743 Sum_probs=16.3
Q ss_pred CCeeEEeC-CCCcccHHHHHHH
Q 026092 206 GDRQMKLP-CRHVYHSECITKW 226 (243)
Q Consensus 206 ge~v~~LP-C~H~FH~~CI~~W 226 (243)
+...+..| |+|.|+..|...|
T Consensus 37 ~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 37 GCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCeeECCCCCCeECCCCCCcC
Confidence 34456664 9999999998888
No 178
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=21.96 E-value=30 Score=33.44 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=0.0
Q ss_pred CcccccccccccC-----CC-----------eeEEeCCCCcccHHHHHHHHhc---------CCCCCccCccc
Q 026092 193 GERCVICQMKYKR-----GD-----------RQMKLPCRHVYHSECITKWLGI---------NKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~-----ge-----------~v~~LPC~H~FH~~CI~~WLk~---------~~tCPlCR~~v 240 (243)
...|++|+..-.- |. ...--||||+--.....-|-+. +..||.|-.+|
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L 400 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPL 400 (416)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcc
Confidence 6799999964211 11 1234579999888899999874 24799998766
No 179
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.75 E-value=75 Score=25.95 Aligned_cols=11 Identities=0% Similarity=-0.469 Sum_probs=8.8
Q ss_pred CCCCccCcccc
Q 026092 231 KVTGLALKHNY 241 (243)
Q Consensus 231 ~tCPlCR~~v~ 241 (243)
..||.|..++.
T Consensus 124 f~Cp~Cg~~l~ 134 (147)
T smart00531 124 FTCPRCGEELE 134 (147)
T ss_pred EECCCCCCEEE
Confidence 67999988764
No 180
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=28 Score=33.68 Aligned_cols=37 Identities=14% Similarity=0.424 Sum_probs=26.9
Q ss_pred CcccccccccccCCCe-----eEEeCCCCcccHHHHHHHHhc
Q 026092 193 GERCVICQMKYKRGDR-----QMKLPCRHVYHSECITKWLGI 229 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~-----v~~LPC~H~FH~~CI~~WLk~ 229 (243)
...|+.|....+.... ....+|+|.||..|+..|...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3459999988776442 122249999999999998754
No 181
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=20.68 E-value=43 Score=31.16 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=26.8
Q ss_pred Cccccccccccc-----C---CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCc
Q 026092 193 GERCVICQMKYK-----R---GDRQMKLPCRHVYHSECITKWLGINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~-----~---ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~ 238 (243)
...|+||-..-. . .+..+.|- |.-|-..|--..-.||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~-----CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLS-----CSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEE-----cCCCCCcccccCccCCCCCC
Confidence 458999986532 1 12344444 44477788777889999975
No 182
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=20.59 E-value=37 Score=34.16 Aligned_cols=52 Identities=8% Similarity=0.090 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~~v~i 242 (243)
.....|.+|+......++...+. |.|.+...|+..|=.....||.|++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~ 310 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRT 310 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccc
Confidence 34578999998877777666666 89999999999999999999999988753
No 183
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.51 E-value=30 Score=36.42 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
....|-.|....- ...-+.+ |++.+|..|+..|-
T Consensus 228 ~~~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhccccc--ceeEEccccCCeeeecchhhcc
Confidence 3467888876522 2233445 99999999999994
No 184
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.08 E-value=81 Score=21.94 Aligned_cols=34 Identities=18% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCcccccccccccC--CCeeEEeC-CCCcccHHHHHH
Q 026092 192 SGERCVICQMKYKR--GDRQMKLP-CRHVYHSECITK 225 (243)
Q Consensus 192 ~~~~C~ICle~f~~--ge~v~~LP-C~H~FH~~CI~~ 225 (243)
....|+.|-...+. .......| ||+.+|++-..-
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 45789999888777 44566667 999988875443
No 185
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.03 E-value=67 Score=20.97 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=12.0
Q ss_pred HHHHhcCCCCCccCcccc
Q 026092 224 TKWLGINKVTGLALKHNY 241 (243)
Q Consensus 224 ~~WLk~~~tCPlCR~~v~ 241 (243)
.-|-....+||.|..|++
T Consensus 11 ~G~~ML~~~Cp~C~~PL~ 28 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPLM 28 (41)
T ss_pred HhHhHhcCccCCCCCeeE
Confidence 445556678888876653
Done!