Query 026092
Match_columns 243
No_of_seqs 182 out of 1556
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2.7E-18 9.1E-23 129.3 7.2 77 163-241 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.7 8.6E-18 2.9E-22 121.5 2.4 67 172-241 5-71 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.4E-16 4.7E-21 108.2 4.1 51 192-242 4-55 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.5E-15 5.2E-20 107.7 5.1 51 191-241 12-62 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.6E-15 5.6E-20 108.9 4.8 51 191-241 13-63 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 2.3E-15 7.8E-20 111.0 4.8 51 191-241 13-75 (81)
7 2ect_A Ring finger protein 126 99.5 2.8E-15 9.7E-20 108.7 4.2 51 191-241 13-63 (78)
8 3dpl_R Ring-box protein 1; ubi 99.5 3E-15 1E-19 116.5 3.5 64 178-241 22-100 (106)
9 2ecm_A Ring finger and CHY zin 99.5 9.5E-15 3.3E-19 98.8 4.5 49 192-240 4-53 (55)
10 3ng2_A RNF4, snurf, ring finge 99.5 1.8E-14 6.1E-19 102.2 3.1 51 191-241 8-62 (71)
11 2ea6_A Ring finger protein 4; 99.5 3.6E-14 1.2E-18 99.8 4.2 50 191-240 13-66 (69)
12 1v87_A Deltex protein 2; ring- 99.4 5.7E-14 2E-18 108.7 5.1 50 192-241 24-93 (114)
13 4a0k_B E3 ubiquitin-protein li 99.4 4.4E-15 1.5E-19 117.7 -1.3 64 177-240 32-110 (117)
14 2xeu_A Ring finger protein 4; 99.4 5.9E-14 2E-18 97.3 3.1 50 192-241 2-55 (64)
15 2d8s_A Cellular modulator of i 99.4 1.3E-13 4.6E-18 102.0 3.8 52 190-242 12-70 (80)
16 2d8t_A Dactylidin, ring finger 99.4 1.2E-13 4.3E-18 98.6 3.4 48 191-241 13-60 (71)
17 1chc_A Equine herpes virus-1 r 99.4 1.8E-13 6E-18 96.5 3.6 47 192-240 4-50 (68)
18 2ecn_A Ring finger protein 141 99.4 9.9E-14 3.4E-18 98.5 1.1 47 191-241 13-59 (70)
19 2ct2_A Tripartite motif protei 99.4 6E-13 2E-17 97.9 5.1 51 191-241 13-67 (88)
20 2djb_A Polycomb group ring fin 99.3 5.9E-13 2E-17 95.3 4.3 48 191-241 13-61 (72)
21 2csy_A Zinc finger protein 183 99.3 9.2E-13 3.1E-17 96.2 4.9 47 191-240 13-59 (81)
22 2ysl_A Tripartite motif-contai 99.3 1.2E-12 4E-17 93.4 5.3 48 191-241 18-68 (73)
23 4ayc_A E3 ubiquitin-protein li 99.3 6.4E-13 2.2E-17 106.8 4.1 45 193-240 53-97 (138)
24 2ecy_A TNF receptor-associated 99.3 1.2E-12 4.1E-17 92.0 4.1 48 191-241 13-61 (66)
25 2yur_A Retinoblastoma-binding 99.3 1.5E-12 5.1E-17 93.8 3.9 48 191-241 13-63 (74)
26 1t1h_A Gspef-atpub14, armadill 99.3 3.4E-12 1.2E-16 92.3 4.5 48 191-241 6-54 (78)
27 3lrq_A E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 97.4 4.0 47 192-241 21-69 (100)
28 4ap4_A E3 ubiquitin ligase RNF 99.2 2.6E-12 9E-17 100.5 3.4 50 192-241 6-59 (133)
29 2ecw_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 91.7 4.8 48 191-241 17-70 (85)
30 2egp_A Tripartite motif-contai 99.2 1.5E-12 5E-17 94.1 1.4 48 191-241 10-64 (79)
31 2ysj_A Tripartite motif-contai 99.2 9.6E-12 3.3E-16 86.5 5.1 44 190-236 17-63 (63)
32 2ecv_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 91.8 3.9 48 191-241 17-70 (85)
33 2y43_A E3 ubiquitin-protein li 99.2 6.6E-12 2.3E-16 94.9 4.3 47 192-241 21-68 (99)
34 2ct0_A Non-SMC element 1 homol 99.2 6.9E-12 2.4E-16 91.7 4.0 49 191-241 13-63 (74)
35 2ckl_A Polycomb group ring fin 99.2 8.4E-12 2.9E-16 95.9 4.4 48 191-241 13-61 (108)
36 3fl2_A E3 ubiquitin-protein li 99.2 9.7E-12 3.3E-16 97.8 4.3 47 192-241 51-98 (124)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 9.2E-12 3.1E-16 97.4 3.6 50 191-240 70-123 (133)
38 3ztg_A E3 ubiquitin-protein li 99.2 1.6E-11 5.5E-16 91.4 4.5 47 191-240 11-60 (92)
39 2ecj_A Tripartite motif-contai 99.2 1.4E-11 4.9E-16 83.7 3.8 43 191-236 13-58 (58)
40 2ckl_B Ubiquitin ligase protei 99.2 3.4E-11 1.2E-15 99.1 6.8 46 192-240 53-100 (165)
41 1g25_A CDK-activating kinase a 99.2 1.8E-11 6.1E-16 85.7 4.1 48 193-240 3-53 (65)
42 1jm7_A BRCA1, breast cancer ty 99.1 2.1E-11 7.3E-16 93.5 3.4 46 193-241 21-69 (112)
43 3hct_A TNF receptor-associated 99.1 3.1E-11 1E-15 94.4 3.5 48 191-241 16-64 (118)
44 1z6u_A NP95-like ring finger p 99.1 4.9E-11 1.7E-15 97.6 4.3 47 192-241 77-124 (150)
45 3l11_A E3 ubiquitin-protein li 99.1 2E-11 6.9E-16 94.7 1.2 46 192-240 14-60 (115)
46 1rmd_A RAG1; V(D)J recombinati 99.1 7.8E-11 2.7E-15 91.4 4.1 47 192-241 22-69 (116)
47 2kr4_A Ubiquitin conjugation f 99.0 1.3E-10 4.5E-15 86.3 4.3 46 192-240 13-58 (85)
48 2vje_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 82.2 3.4 46 192-240 7-55 (64)
49 3knv_A TNF receptor-associated 99.0 7.4E-11 2.5E-15 95.6 2.7 50 188-240 26-76 (141)
50 2kre_A Ubiquitin conjugation f 99.0 1.8E-10 6.2E-15 88.3 4.0 46 192-240 28-73 (100)
51 2y1n_A E3 ubiquitin-protein li 99.0 2.5E-10 8.5E-15 106.7 5.2 46 192-240 331-377 (389)
52 1wgm_A Ubiquitin conjugation f 99.0 2.8E-10 9.5E-15 86.9 4.3 47 192-241 21-68 (98)
53 2vje_B MDM4 protein; proto-onc 99.0 2.9E-10 1E-14 79.8 3.2 46 192-240 6-54 (63)
54 1e4u_A Transcriptional repress 98.9 4.2E-10 1.4E-14 82.6 3.8 49 191-240 9-60 (78)
55 1bor_A Transcription factor PM 98.9 2.1E-10 7.3E-15 78.5 1.0 46 191-242 4-49 (56)
56 1jm7_B BARD1, BRCA1-associated 98.9 2.3E-10 7.8E-15 89.2 1.0 45 192-241 21-66 (117)
57 4ic3_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 80.7 2.6 42 192-240 23-65 (74)
58 2c2l_A CHIP, carboxy terminus 98.9 1.1E-09 3.7E-14 95.5 4.1 47 192-241 207-254 (281)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 5.3E-10 1.8E-14 103.0 1.3 52 190-241 305-372 (381)
60 3hcs_A TNF receptor-associated 98.8 1.4E-09 4.9E-14 89.6 3.3 48 191-241 16-64 (170)
61 2yu4_A E3 SUMO-protein ligase 98.8 2.9E-09 9.9E-14 80.2 3.8 45 192-239 6-59 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.8 4.6E-09 1.6E-13 73.4 4.0 49 191-242 4-59 (60)
63 2ecg_A Baculoviral IAP repeat- 98.7 4.9E-09 1.7E-13 75.6 2.5 41 193-240 25-66 (75)
64 2f42_A STIP1 homology and U-bo 98.7 1.3E-08 4.3E-13 86.0 4.2 46 192-240 105-151 (179)
65 2ea5_A Cell growth regulator w 98.7 1.3E-08 4.5E-13 72.5 3.5 44 191-241 13-57 (68)
66 2yho_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 74.6 2.4 41 193-240 18-59 (79)
67 1wim_A KIAA0161 protein; ring 98.5 2.4E-08 8.3E-13 74.7 1.9 48 192-239 4-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.5 4.1E-08 1.4E-12 68.7 2.8 45 193-240 3-48 (61)
69 3t6p_A Baculoviral IAP repeat- 98.5 3.5E-08 1.2E-12 90.9 1.6 42 192-240 294-336 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1.7E-07 5.9E-12 83.3 3.5 47 191-240 179-230 (267)
71 3vk6_A E3 ubiquitin-protein li 98.3 6E-07 2.1E-11 68.8 4.1 45 195-241 3-48 (101)
72 3nw0_A Non-structural maintena 97.9 4.8E-06 1.6E-10 72.9 2.8 46 192-240 179-227 (238)
73 2lri_C Autoimmune regulator; Z 94.0 0.032 1.1E-06 39.2 2.8 45 191-239 10-59 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 93.2 0.053 1.8E-06 40.1 3.0 35 193-227 3-38 (101)
75 2ko5_A Ring finger protein Z; 92.8 0.051 1.7E-06 41.0 2.2 44 192-240 27-71 (99)
76 1wil_A KIAA1045 protein; ring 90.3 0.25 8.5E-06 36.6 3.6 34 192-226 14-47 (89)
77 2l5u_A Chromodomain-helicase-D 88.3 0.23 8E-06 33.9 2.1 45 191-239 9-58 (61)
78 3m62_A Ubiquitin conjugation f 86.0 0.55 1.9E-05 48.3 4.2 46 192-240 890-936 (968)
79 1we9_A PHD finger family prote 83.3 0.21 7.1E-06 34.2 -0.2 48 192-239 5-58 (64)
80 1f62_A Transcription factor WS 83.1 0.53 1.8E-05 30.6 1.8 44 195-239 2-50 (51)
81 1mm2_A MI2-beta; PHD, zinc fin 82.7 0.24 8.2E-06 33.9 -0.1 45 192-240 8-57 (61)
82 3v43_A Histone acetyltransfera 82.6 0.47 1.6E-05 36.1 1.6 45 194-238 62-111 (112)
83 2k16_A Transcription initiatio 76.2 0.56 1.9E-05 33.0 0.1 47 192-239 17-68 (75)
84 3v43_A Histone acetyltransfera 75.1 4.4 0.00015 30.6 5.0 33 192-224 4-42 (112)
85 2ku3_A Bromodomain-containing 75.1 0.8 2.7E-05 32.3 0.7 49 190-238 13-65 (71)
86 1xwh_A Autoimmune regulator; P 74.1 0.33 1.1E-05 33.6 -1.5 43 192-238 7-54 (66)
87 2puy_A PHD finger protein 21A; 73.1 0.41 1.4E-05 32.4 -1.2 44 192-239 4-52 (60)
88 2yql_A PHD finger protein 21A; 73.0 0.3 1E-05 32.7 -1.9 44 191-238 7-55 (56)
89 2lv9_A Histone-lysine N-methyl 72.9 1.1 3.7E-05 33.4 1.0 45 192-238 27-75 (98)
90 2ysm_A Myeloid/lymphoid or mix 72.2 0.97 3.3E-05 34.0 0.6 37 191-228 5-42 (111)
91 2lbm_A Transcriptional regulat 69.2 6.5 0.00022 31.4 4.9 45 191-239 61-117 (142)
92 2kwj_A Zinc finger protein DPF 68.8 1.5 5E-05 33.5 0.9 33 194-226 2-41 (114)
93 2l43_A N-teminal domain from h 68.1 1.5 5.3E-05 32.0 0.9 49 191-239 23-75 (88)
94 1wep_A PHF8; structural genomi 67.3 3.5 0.00012 29.2 2.6 46 193-239 12-63 (79)
95 1fp0_A KAP-1 corepressor; PHD 65.7 1.6 5.4E-05 32.3 0.5 45 191-239 23-72 (88)
96 1weo_A Cellulose synthase, cat 65.3 9.4 0.00032 28.4 4.6 49 192-240 15-68 (93)
97 2vpb_A Hpygo1, pygopus homolog 64.9 5 0.00017 27.6 3.0 34 191-224 6-41 (65)
98 2yt5_A Metal-response element- 61.8 3.7 0.00013 27.8 1.8 48 192-239 5-61 (66)
99 2kgg_A Histone demethylase jar 60.6 2.8 9.7E-05 27.4 1.0 43 195-237 4-52 (52)
100 1y02_A CARP2, FYVE-ring finger 60.3 0.93 3.2E-05 35.3 -1.7 46 192-237 18-64 (120)
101 1joc_A EEA1, early endosomal a 60.0 4.7 0.00016 31.2 2.4 36 192-227 68-104 (125)
102 1wev_A Riken cDNA 1110020M19; 59.9 1 3.5E-05 32.9 -1.4 48 192-239 15-72 (88)
103 3t7l_A Zinc finger FYVE domain 58.7 5.4 0.00018 29.1 2.4 36 192-227 19-55 (90)
104 1z2q_A LM5-1; membrane protein 58.6 5.9 0.0002 28.4 2.5 37 191-227 19-56 (84)
105 3ql9_A Transcriptional regulat 58.0 14 0.00049 28.9 4.8 44 192-239 56-111 (129)
106 4gne_A Histone-lysine N-methyl 57.4 5.7 0.00019 30.2 2.4 40 191-236 13-59 (107)
107 2yw8_A RUN and FYVE domain-con 57.3 5.9 0.0002 28.3 2.3 37 191-227 17-54 (82)
108 3mpx_A FYVE, rhogef and PH dom 57.1 2.2 7.6E-05 38.8 0.0 48 192-239 374-429 (434)
109 3shb_A E3 ubiquitin-protein li 57.1 1.4 4.7E-05 31.7 -1.2 43 195-238 28-76 (77)
110 3i2d_A E3 SUMO-protein ligase 55.3 11 0.00037 34.8 4.2 45 194-240 250-298 (371)
111 2cs3_A Protein C14ORF4, MY039 54.9 13 0.00045 27.2 3.8 37 192-229 14-52 (93)
112 1zbd_B Rabphilin-3A; G protein 54.6 5.8 0.0002 31.3 2.1 35 191-225 53-89 (134)
113 1x4u_A Zinc finger, FYVE domai 53.5 8.1 0.00028 27.6 2.5 36 191-226 12-48 (84)
114 2e6r_A Jumonji/ARID domain-con 52.6 0.81 2.8E-05 33.8 -3.1 46 192-238 15-65 (92)
115 2e6s_A E3 ubiquitin-protein li 51.8 3 0.0001 29.7 -0.0 45 193-238 26-76 (77)
116 1wfk_A Zinc finger, FYVE domai 51.8 8.3 0.00029 28.0 2.4 35 192-226 8-43 (88)
117 1dvp_A HRS, hepatocyte growth 51.2 6.4 0.00022 33.0 1.9 35 193-227 161-196 (220)
118 2xb1_A Pygopus homolog 2, B-ce 51.0 8.1 0.00028 29.0 2.3 47 193-239 3-61 (105)
119 2o35_A Hypothetical protein DU 50.8 6 0.00021 29.9 1.5 11 218-228 43-53 (105)
120 3fyb_A Protein of unknown func 50.7 6.1 0.00021 29.9 1.5 11 218-228 42-52 (104)
121 1vfy_A Phosphatidylinositol-3- 50.5 9.2 0.00032 26.6 2.4 33 194-226 12-45 (73)
122 3zyq_A Hepatocyte growth facto 49.3 7 0.00024 33.1 1.9 35 193-227 164-199 (226)
123 2gmg_A Hypothetical protein PF 49.1 4 0.00014 31.1 0.3 22 214-240 73-94 (105)
124 4fo9_A E3 SUMO-protein ligase 49.0 17 0.00057 33.3 4.4 46 194-241 216-265 (360)
125 3ask_A E3 ubiquitin-protein li 47.9 4.1 0.00014 35.0 0.2 46 193-239 174-225 (226)
126 1weu_A Inhibitor of growth fam 47.3 6.8 0.00023 28.9 1.3 42 193-239 36-85 (91)
127 1wen_A Inhibitor of growth fam 46.8 7.7 0.00026 27.1 1.5 42 193-239 16-65 (71)
128 2ysm_A Myeloid/lymphoid or mix 45.7 2.6 8.8E-05 31.6 -1.3 43 195-238 56-103 (111)
129 3asl_A E3 ubiquitin-protein li 45.0 3.9 0.00013 28.5 -0.3 44 195-239 20-69 (70)
130 1wem_A Death associated transc 44.3 6.3 0.00021 27.5 0.7 44 193-238 16-69 (76)
131 3o70_A PHD finger protein 13; 42.7 4.1 0.00014 28.2 -0.5 46 192-239 18-67 (68)
132 3f6q_B LIM and senescent cell 42.1 13 0.00046 24.5 2.1 40 192-240 10-49 (72)
133 2cu8_A Cysteine-rich protein 2 42.0 7.4 0.00025 26.6 0.7 38 193-240 9-46 (76)
134 2csz_A Synaptotagmin-like prot 40.7 12 0.00039 26.9 1.6 34 190-223 22-57 (76)
135 1zfo_A LAsp-1; LIM domain, zin 40.4 7.9 0.00027 22.5 0.6 28 194-223 4-31 (31)
136 1iml_A CRIP, cysteine rich int 40.2 5.3 0.00018 27.3 -0.3 46 192-241 26-72 (76)
137 2zet_C Melanophilin; complex, 38.9 13 0.00044 29.9 1.8 46 192-238 67-116 (153)
138 2co8_A NEDD9 interacting prote 37.1 22 0.00075 24.7 2.7 30 192-223 14-43 (82)
139 2dj7_A Actin-binding LIM prote 36.5 22 0.00074 24.7 2.5 39 192-240 14-52 (80)
140 3a1b_A DNA (cytosine-5)-methyl 36.1 28 0.00097 28.2 3.4 34 192-229 78-114 (159)
141 1z60_A TFIIH basal transcripti 35.7 16 0.00054 24.8 1.6 42 194-236 16-58 (59)
142 2kwj_A Zinc finger protein DPF 35.6 3.4 0.00011 31.4 -2.1 44 194-238 59-107 (114)
143 1wew_A DNA-binding family prot 34.5 7.9 0.00027 27.3 -0.1 46 192-239 15-72 (78)
144 2jne_A Hypothetical protein YF 33.7 12 0.00039 28.3 0.7 42 194-243 33-74 (101)
145 1x4l_A Skeletal muscle LIM-pro 33.2 23 0.0008 23.6 2.2 12 194-205 6-17 (72)
146 1m3v_A FLIN4, fusion of the LI 32.4 36 0.0012 25.4 3.3 48 193-241 32-80 (122)
147 1x63_A Skeletal muscle LIM-pro 28.7 45 0.0015 22.6 3.1 38 194-240 16-53 (82)
148 3mjh_B Early endosome antigen 28.2 15 0.00052 22.2 0.4 8 194-201 6-13 (34)
149 2jny_A Uncharacterized BCR; st 28.1 9.9 0.00034 26.5 -0.5 18 224-241 4-21 (67)
150 1x4k_A Skeletal muscle LIM-pro 28.1 23 0.00079 23.5 1.4 11 195-205 7-17 (72)
151 2pv0_B DNA (cytosine-5)-methyl 27.4 39 0.0013 31.2 3.2 43 192-238 92-147 (386)
152 2d8x_A Protein pinch; LIM doma 27.3 28 0.00095 23.0 1.7 32 194-227 32-63 (70)
153 1x62_A C-terminal LIM domain p 26.6 35 0.0012 23.3 2.2 37 193-240 15-51 (79)
154 1wyh_A SLIM 2, skeletal muscle 26.5 22 0.00075 23.6 1.1 11 195-205 7-17 (72)
155 1g47_A Pinch protein; LIM doma 26.5 46 0.0016 22.2 2.8 29 193-222 11-39 (77)
156 1r79_A Diacylglycerol kinase, 26.4 35 0.0012 24.6 2.2 40 193-235 38-80 (84)
157 2d8v_A Zinc finger FYVE domain 26.0 24 0.00081 24.7 1.1 31 192-226 7-38 (67)
158 2jvx_A NF-kappa-B essential mo 25.6 14 0.00047 21.5 -0.1 9 231-239 4-12 (28)
159 2xjy_A Rhombotin-2; oncoprotei 24.9 44 0.0015 24.8 2.7 25 216-240 52-76 (131)
160 2l3k_A Rhombotin-2, linker, LI 24.9 33 0.0011 25.6 1.9 36 192-228 35-70 (123)
161 2d8y_A Eplin protein; LIM doma 23.9 34 0.0012 24.0 1.7 13 194-206 16-28 (91)
162 2lq6_A Bromodomain-containing 23.7 72 0.0024 22.9 3.5 31 193-225 17-50 (87)
163 2a20_A Regulating synaptic mem 23.6 3.8 0.00013 28.2 -3.3 49 190-238 6-59 (62)
164 6rxn_A Rubredoxin; electron tr 23.1 15 0.00052 23.7 -0.3 8 232-239 32-39 (46)
165 2l4z_A DNA endonuclease RBBP8, 22.6 36 0.0012 25.7 1.8 38 193-240 61-98 (123)
166 1a7i_A QCRP2 (LIM1); LIM domai 22.1 16 0.00055 25.1 -0.4 14 194-207 8-21 (81)
167 2kpi_A Uncharacterized protein 22.0 9.4 0.00032 25.6 -1.6 16 225-240 5-20 (56)
168 2cor_A Pinch protein; LIM doma 21.8 46 0.0016 22.7 2.1 26 194-222 16-41 (79)
169 1x68_A FHL5 protein; four-and- 21.5 57 0.002 21.9 2.5 29 194-223 6-36 (76)
170 2vnf_A ING 4, P29ING4, inhibit 20.3 11 0.00039 25.2 -1.4 41 193-238 10-58 (60)
171 1l8d_A DNA double-strand break 20.2 26 0.00087 25.9 0.4 7 194-200 48-54 (112)
172 1wd2_A Ariadne-1 protein homol 20.2 14 0.00049 24.9 -0.9 37 193-229 6-47 (60)
173 1lko_A Rubrerythrin all-iron(I 20.2 28 0.00097 28.5 0.7 8 232-239 173-180 (191)
174 3c6w_A P28ING5, inhibitor of g 20.1 12 0.00041 25.1 -1.3 41 193-238 9-57 (59)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=129.29 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHhhCCceeeecCchhhccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 163 TQSRGLSQEQINLLPTSKYKFGNLFLRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 163 ~~~rGLs~~~I~sLp~~~~k~~~~~~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
...+|++++.|++||..++.... ........|+||++.|..++.++.|||+|.||..||.+||+.+.+||+||+++.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~--~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDH--GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTC--SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCHHHHHhCCCeeecccc--cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34679999999999998876542 223456789999999999999999999999999999999999999999999874
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.6e-18 Score=121.55 Aligned_cols=67 Identities=22% Similarity=0.566 Sum_probs=57.3
Q ss_pred HHhhCCceeeecCchhhccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 172 QINLLPTSKYKFGNLFLRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 172 ~I~sLp~~~~k~~~~~~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.|+.||..+++.. ........|+||++.|..++.++.|||+|+||..||.+||+.+.+||+||+++.
T Consensus 5 ~i~~lp~~~~~~~---~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 5 SSGQLPSYRFNPN---NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCSSCCCEEBCSS---SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred hHhhCCcEEecCc---cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567888877653 233456799999999999999999999999999999999999999999999874
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=1.4e-16 Score=108.17 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=47.7
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCccccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLALKHNYI 242 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~~v~i 242 (243)
+...|+||++.|..++.+..+| |+|.||..||.+|++.+.+||+||+++.|
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 4679999999999999999998 99999999999999999999999999865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=107.67 Aligned_cols=51 Identities=29% Similarity=0.680 Sum_probs=47.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.|..++.++.+||+|+||..||.+|++.+.+||+||+++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 456789999999998888999999999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=108.91 Aligned_cols=51 Identities=31% Similarity=0.674 Sum_probs=47.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.|.....++.|||+|+||..||.+||+.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 456799999999999998999999999999999999999999999999875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=111.04 Aligned_cols=51 Identities=22% Similarity=0.512 Sum_probs=42.6
Q ss_pred CCCcccccccccccC-----------CCeeEEeC-CCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKR-----------GDRQMKLP-CRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~-----------ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
..+..|+||++.|.. ++.++.++ |+|.||..||.+||+.+++||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 356778888888854 45566776 9999999999999999999999999874
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=2.8e-15 Score=108.70 Aligned_cols=51 Identities=31% Similarity=0.735 Sum_probs=47.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.|.....++.|+|+|+||..||.+|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 456899999999999888899999999999999999999999999999874
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.53 E-value=3e-15 Score=116.54 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=49.9
Q ss_pred ceeeecCchhhccCCCcccccccccccCCC---------------eeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 178 TSKYKFGNLFLRKRSGERCVICQMKYKRGD---------------RQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 178 ~~~~k~~~~~~~~~~~~~C~ICle~f~~ge---------------~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
..+++.-.........+.|+||++.|.... .++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 22 ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 22 VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred EEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 334433333444557789999999998641 3677889999999999999999999999999853
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=9.5e-15 Score=98.83 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=43.5
Q ss_pred CCcccccccccccCC-CeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRG-DRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~g-e~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++.|..+ +.++.++|+|+||..||.+|++.+.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 467899999999664 4577888999999999999999999999999986
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=1.8e-14 Score=102.22 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=44.5
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKR----GDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~----ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. ++.++.++|+|.||..||.+|++.+.+||+||+++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 456899999999876 355678899999999999999999999999999763
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=99.78 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=43.9
Q ss_pred CCCcccccccccccCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRG----DRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~g----e~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|+||++.|... ..+..++|+|+||..||.+||+.+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 4568999999999763 4457889999999999999999999999999986
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=5.7e-14 Score=108.74 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCcccccccccccCCC---------------eeEEeCCCCcccHHHHHHHH-----hcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGD---------------RQMKLPCRHVYHSECITKWL-----GINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge---------------~v~~LPC~H~FH~~CI~~WL-----k~~~tCPlCR~~v~ 241 (243)
....|+||++.|.... .+..++|+|+||..||.+|| +.+.+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3569999999997643 34478899999999999999 45679999998764
No 13
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.45 E-value=4.4e-15 Score=117.68 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=8.6
Q ss_pred CceeeecCchhhccCCCcccccccccccCC-------------C--eeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 177 PTSKYKFGNLFLRKRSGERCVICQMKYKRG-------------D--RQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 177 p~~~~k~~~~~~~~~~~~~C~ICle~f~~g-------------e--~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...++..-.........+.|+||++.|... + .++.++|+|.||..||.+||+.+.+||+||+++
T Consensus 32 ~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 32 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred EEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 333444444445566778999999999752 2 234457999999999999999999999999985
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=5.9e-14 Score=97.27 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=43.5
Q ss_pred CCcccccccccccC----CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKR----GDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~----ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
+...|+||++.+.. ++.+..++|+|.||..||.+|++.+.+||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 35789999999975 345678899999999999999999999999999863
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=102.02 Aligned_cols=52 Identities=21% Similarity=0.512 Sum_probs=44.3
Q ss_pred cCCCcccccccccccCCCeeEEeCCC-----CcccHHHHHHHHhcC--CCCCccCccccc
Q 026092 190 KRSGERCVICQMKYKRGDRQMKLPCR-----HVYHSECITKWLGIN--KVTGLALKHNYI 242 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~~LPC~-----H~FH~~CI~~WLk~~--~tCPlCR~~v~i 242 (243)
......|.||+++|..++.+ ++||+ |.||..||++||+.+ .+||+||.++.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567999999999887766 58996 999999999999876 499999998754
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=98.59 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=42.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. .+.+||+|+||..||.+|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456789999999866 677899999999999999999999999999863
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=1.8e-13 Score=96.51 Aligned_cols=47 Identities=34% Similarity=0.637 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++.+.. ..+.+||+|.||..||.+|++.+.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 45789999999764 357889999999999999999999999999986
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.9e-14 Score=98.48 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. +.+||+|.||..||.+|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 356799999999877 67999999999999999999999999998763
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6e-13 Score=97.89 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=44.6
Q ss_pred CCCcccccccccccCCCe-eEEeCCCCcccHHHHHHHHhcC---CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDR-QMKLPCRHVYHSECITKWLGIN---KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~-v~~LPC~H~FH~~CI~~WLk~~---~tCPlCR~~v~ 241 (243)
.....|+||++.|...+. .+.|+|+|.||..||.+|++.+ .+||+||+++-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 456789999999998765 7788999999999999999876 79999999763
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.9e-13 Score=95.28 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. .+.+ +|+|.||..||.+|++.+.+||+||+++-
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 346799999999876 4555 89999999999999999999999999863
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.2e-13 Score=96.23 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|+||++.|.. .+++||+|.||..||.+|++...+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 345789999999866 56799999999999999999999999999986
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=93.36 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh---cCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG---INKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk---~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. .+.++|+|.||..||.+|++ .+..||+||+++-
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 456899999999885 67789999999999999997 4569999999874
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=6.4e-13 Score=106.80 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=41.3
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|+||++.|.. ++.+||||.||..||.+|++.+.+||+||+++
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 4679999999876 67899999999999999999999999999986
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=92.01 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-INKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. ...++|+|.||..||.+|++ .+.+||+||+++-
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 456789999999876 44589999999999999994 5679999999863
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=93.85 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC--CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN--KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~--~tCPlCR~~v~ 241 (243)
.....|+||++.|.. .+.+| |+|.||..||.+|++.+ .+||+||++++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 346799999999886 67799 99999999999999866 69999999753
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=3.4e-12 Score=92.27 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v~ 241 (243)
.....|+||++.|.+ .+.++|||.||..||.+||+. +.+||+||+++-
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 356899999999876 677899999999999999987 789999999863
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=97.44 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCeeEE-eCCCCcccHHHHHHHHhcC-CCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMK-LPCRHVYHSECITKWLGIN-KVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~-LPC~H~FH~~CI~~WLk~~-~tCPlCR~~v~ 241 (243)
....|+||++.|.. .+. ++|||.||..||.+|++.+ .+||+||+++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45789999999976 566 8899999999999999987 69999999863
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.6e-12 Score=100.54 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=44.0
Q ss_pred CCcccccccccccCC----CeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRG----DRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~g----e~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
+...|+||++.|... ..++.++|||.||..||.+||+.+.+||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 467999999999763 55688999999999999999999999999999763
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=5.3e-12 Score=91.72 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc------CCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI------NKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~------~~tCPlCR~~v~ 241 (243)
.....|+||++.|.. ...++|+|.||..||.+|++. ...||+||+++-
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 356799999999876 457899999999999999987 679999999863
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=1.5e-12 Score=94.06 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-------CCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-------NKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-------~~tCPlCR~~v~ 241 (243)
.....|+||++.|.. .+.|||+|.||..||.+|++. ...||+||+++.
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 456899999999876 556899999999999999986 569999999863
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.6e-12 Score=86.46 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=37.9
Q ss_pred cCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh---cCCCCCcc
Q 026092 190 KRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG---INKVTGLA 236 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk---~~~tCPlC 236 (243)
......|+||++.|.. .+.|+|+|.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456899999999886 67789999999999999998 45699998
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-12 Score=91.75 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc------CCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI------NKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~------~~tCPlCR~~v~ 241 (243)
.....|+||++.+.. ...+||+|.||..||.+|++. ...||+||+++.
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 356799999999876 566899999999999999987 789999999864
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=94.94 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
....|+||++.|.. .+.+ +|||.||..||.+|++.+.+||+||+++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 35789999999876 5556 89999999999999999999999999764
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=91.68 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC--CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN--KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~--~tCPlCR~~v~ 241 (243)
.....|+||.+.+..+.... .|+|.||..||.+||+.+ .+||+||+++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 45689999999998764332 699999999999999987 89999999763
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.20 E-value=8.4e-12 Score=95.91 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=42.2
Q ss_pred CCCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|+||++.|.. .+.+ +|||.||..||.+|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 356799999999876 5566 99999999999999999999999999864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=9.7e-12 Score=97.81 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK-VTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~-tCPlCR~~v~ 241 (243)
....|+||++.|.. .+.+||||.||..||.+|++.+. +||+||+++-
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 45789999999886 67789999999999999998554 9999999873
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=9.2e-12 Score=97.41 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=43.7
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKR----GDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~----ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.....|+||++.|.. +...+.++|+|+||..||.+||+.+++||+||+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 356789999999876 34457889999999999999999999999999976
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=91.37 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC--CCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN--KVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~--~tCPlCR~~v 240 (243)
.....|+||++.|.. .+.+| |||.||..||.+|+..+ ..||+||+++
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 456899999999886 67899 99999999999999754 5999999986
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=83.73 Aligned_cols=43 Identities=21% Similarity=0.548 Sum_probs=36.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh---cCCCCCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG---INKVTGLA 236 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk---~~~tCPlC 236 (243)
.....|+||++.+.. .+.|+|+|.||..||.+|++ .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356799999999877 45689999999999999954 56799998
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=3.4e-11 Score=99.07 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
....|+||++.|.. .+.+ +|+|.||..||.+||+. +..||+||+++
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 34689999999886 4555 89999999999999987 78999999986
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.8e-11 Score=85.70 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=39.2
Q ss_pred Ccccccccc-cccCCCe-eEEeCCCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 193 GERCVICQM-KYKRGDR-QMKLPCRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle-~f~~ge~-v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
+..|+||++ .+..... ...++|||+||..||.+|+.. +..||+||+++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 468999999 6766543 355789999999999999764 46899999986
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.1e-11 Score=93.48 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=39.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC---CCCccCcccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK---VTGLALKHNY 241 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~---tCPlCR~~v~ 241 (243)
...|+||++.+.. ...+||||.||..||.+|++.+. +||+||+++.
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4689999998876 45689999999999999998764 8999999763
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=3.1e-11 Score=94.36 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK-VTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~-tCPlCR~~v~ 241 (243)
.....|+||++.+.. .+.++|||.||..||.+|++.+. +||+||+++.
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 456799999999876 57789999999999999998765 9999999863
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.09 E-value=4.9e-11 Score=97.56 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK-VTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~-tCPlCR~~v~ 241 (243)
....|+||++.|.. .+.+||+|.||..||..|++... +||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 45789999999876 67799999999999999998765 8999999874
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=2e-11 Score=94.66 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v 240 (243)
....|+||++.|.. .+.|+|||.||..||.+|++. +.+||+||+++
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 35789999999876 677899999999999999976 67999999986
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=7.8e-11 Score=91.43 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=41.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v~ 241 (243)
....|+||++.+.. .+.++|||.||..||.+|++. +.+||+||+++.
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 35789999999876 666899999999999999987 779999999863
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.04 E-value=1.3e-10 Score=86.30 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++-|++ .++++|||.|++.||.+||..+.+||+||.++
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 46899999999988 88899999999999999999899999999876
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=1.1e-10 Score=82.23 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCeeEEe--CCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL--PCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L--PC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|.||++.+.+ ...+ ||||+ |+..|+.+|++.++.||+||+++
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 45789999998665 4445 99999 89999999999999999999987
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=7.4e-11 Score=95.65 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=42.5
Q ss_pred hccCCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCC-CCCccCccc
Q 026092 188 LRKRSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINK-VTGLALKHN 240 (243)
Q Consensus 188 ~~~~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~-tCPlCR~~v 240 (243)
........|+||+..|.. .+.++|||.||..||.+|++... +||+||+++
T Consensus 26 ~~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 344567899999999877 56789999999999999998665 999999975
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.8e-10 Score=88.30 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++-|++ ++++||||.|++.||.+||..+.+||+||.++
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999988 88899999999999999999889999999976
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.99 E-value=2.5e-10 Score=106.70 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh-cCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG-INKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk-~~~tCPlCR~~v 240 (243)
....|+||++.+.. ++.+||||.||..||..|++ .+.+||+||+++
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 34799999998865 78899999999999999998 688999999986
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.98 E-value=2.8e-10 Score=86.93 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCeeEEeCCC-CcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCR-HVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~-H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
....|+||++-|++ +++++|| |.|++.||.+||..+.+||+||.++-
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 46799999999988 8889999 99999999999998899999999863
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=2.9e-10 Score=79.82 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCcccccccccccCCCeeEEe--CCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL--PCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L--PC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|.||++...+ ...+ ||||+ |+..|+.+|.+.++.||+||+++
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 45789999987655 3445 99998 99999999998889999999987
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=4.2e-10 Score=82.61 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCCcccccccccccCCCeeEEe--CCCCcccHHHHHHHHh-cCCCCCccCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKL--PCRHVYHSECITKWLG-INKVTGLALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~L--PC~H~FH~~CI~~WLk-~~~tCPlCR~~v 240 (243)
.+...|+||++.+...+. ..+ +|||.||..||.+|++ ....||+||+++
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456799999998865332 234 4999999999999985 457899999976
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=2.1e-10 Score=78.47 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~i 242 (243)
.....|+||++.|.. .+.|||+|.||..||.+| ...||+||+++.+
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 346789999999886 577999999999999884 6789999998743
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=2.3e-10 Score=89.22 Aligned_cols=45 Identities=20% Similarity=0.517 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
....|+||++.|.. .+.+ +|||.||..||..|++ ..||+||+++.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46799999999876 5667 8999999999999998 88999999863
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=5.3e-10 Score=80.66 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=37.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++.+.. .+.+||+|. ||..|+.+| ..||+||+++
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCc
Confidence 35689999998766 778999999 999999999 8999999976
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=1.1e-09 Score=95.49 Aligned_cols=47 Identities=11% Similarity=-0.063 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN-KVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~-~tCPlCR~~v~ 241 (243)
....|+||++.|.+ ++++||||.|++.||.+||..+ .+||+||.++-
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 46789999999988 8889999999999999999864 46999999863
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.84 E-value=5.3e-10 Score=102.95 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=41.0
Q ss_pred cCCCcccccccccccCCCeeE-----EeCCCCcccHHHHHHHHhcC-----------CCCCccCcccc
Q 026092 190 KRSGERCVICQMKYKRGDRQM-----KLPCRHVYHSECITKWLGIN-----------KVTGLALKHNY 241 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~ge~v~-----~LPC~H~FH~~CI~~WLk~~-----------~tCPlCR~~v~ 241 (243)
.....+|+||++.+..+..+. ..+|+|.||..||.+||++. .+||+||++|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346689999999998844332 23599999999999999752 47999999873
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=89.62 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN-KVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~-~tCPlCR~~v~ 241 (243)
.....|+||++.|.. .+.++|||.||..||.+|++.+ .+||+||+++.
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 456799999999877 5678999999999999999765 49999999863
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=2.9e-09 Score=80.24 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=39.3
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC------CCCCc--cCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN------KVTGL--ALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~------~tCPl--CR~~ 239 (243)
....|+||++.|++ ++++| |||.|++.||.+||..+ .+||+ |++.
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999999987 78886 99999999999999764 49999 9865
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=4.6e-09 Score=73.45 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=38.1
Q ss_pred CCCcccccccccccCCCeeEEeCC--CC---cccHHHHHHHHhc--CCCCCccCccccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPC--RH---VYHSECITKWLGI--NKVTGLALKHNYI 242 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC--~H---~FH~~CI~~WLk~--~~tCPlCR~~v~i 242 (243)
++...|.||+++. ++.+ ++|| ++ .||..||.+||+. +.+||+||.+.-+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3567899999873 3334 5895 45 9999999999975 5799999987643
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=4.9e-09 Score=75.57 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=35.0
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|+||++.+.. ++.+||+|. ||..|+.+ ...||+||+++
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCcee
Confidence 4689999998765 677899999 99999965 38999999876
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.66 E-value=1.3e-08 Score=85.97 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC-CCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN-KVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~-~tCPlCR~~v 240 (243)
....|+||++-|.+ ++++||||.|++.||.+||..+ .+||+||.++
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 46799999999987 8889999999999999999864 4799999976
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=72.49 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=37.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCcccc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.....|.||++.+.. ++.+||+|. |+..|+.. .+.||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 346789999987655 788999999 99999984 589999999873
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=1.3e-08 Score=74.59 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=36.1
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|.||++.+.. ++.+||||. |+..|+..| ..||+||+++
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchh
Confidence 4689999988765 788999999 999999987 4999999976
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=2.4e-08 Score=74.73 Aligned_cols=48 Identities=13% Similarity=0.357 Sum_probs=39.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcC--------CCCCc--cCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGIN--------KVTGL--ALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~--------~tCPl--CR~~ 239 (243)
....|+||++.+.....+...+|+|.||..||.++++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999998875555545799999999999999742 37999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.51 E-value=4.1e-08 Score=68.70 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=39.9
Q ss_pred CcccccccccccCCCeeEEe-CCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKL-PCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~L-PC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|+||++.+++ .+.+ +|||+|.+.||.+||+.+.+||+++.++
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 3679999999886 5677 7999999999999999888999999876
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=3.5e-08 Score=90.86 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=37.8
Q ss_pred CCcccccccccccCCCeeEEeCCCCc-ccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHV-YHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~-FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|+||++.+.. +..|||||. ||..|+..| ..||+||+++
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCc
Confidence 46789999998876 788899999 999999998 7899999976
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-07 Score=83.33 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCCeeEE-eCCCCcccHHHHHHHHhcC--CCCCc--cCccc
Q 026092 191 RSGERCVICQMKYKRGDRQMK-LPCRHVYHSECITKWLGIN--KVTGL--ALKHN 240 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~-LPC~H~FH~~CI~~WLk~~--~tCPl--CR~~v 240 (243)
.....|+||+.-|++ +++ +.|||.|++.||.+|++.+ .+||+ ||+.+
T Consensus 179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 356799999999876 555 4899999999999999764 47999 99865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.26 E-value=6e-07 Score=68.79 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=37.4
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHHHHHHHhc-CCCCCccCcccc
Q 026092 195 RCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGI-NKVTGLALKHNY 241 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~-~~tCPlCR~~v~ 241 (243)
.|.+|-..+.. ..+.+||+|+|+.+|+..|.+. .++||.|+.+|.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 57888766555 4688999999999999999854 689999999873
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.88 E-value=4.8e-06 Score=72.89 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCC--CCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINK--VTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~--tCPlCR~~v 240 (243)
....|.||.+-...| ...+ |+|.||..|+.+|++.+. .||.|++++
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 467899999988765 3344 999999999999998754 999999875
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.04 E-value=0.032 Score=39.19 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=33.0
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCC----CCCccCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINK----VTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~----tCPlCR~~ 239 (243)
.....|.||.. +..++... |...||..|+...|.... .||.|++.
T Consensus 10 ~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34578999974 23344444 999999999999886532 79999864
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.24 E-value=0.053 Score=40.09 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=26.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHH-HH
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITK-WL 227 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~-WL 227 (243)
+..|.||++.+...-...-+.|+|.|+..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 468999998754323333388999999999998 53
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.79 E-value=0.051 Score=41.04 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCeeEEeCC-CCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPC-RHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC-~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
+-..|-.|+-.++. .+.| .|.+|..|+..-|+....||+|.+++
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 45789999976554 3345 79999999999999999999999876
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.28 E-value=0.25 Score=36.55 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=23.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKW 226 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~W 226 (243)
.+..|.||- .|..++...---|+-+||..|+.+=
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccccccccccHhhcccc
Confidence 467899995 3444332221128999999999995
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.30 E-value=0.23 Score=33.91 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~~ 239 (243)
.....|.||... ..++... |...||..|+..=|... =.||.|++.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789999863 3344444 89999999999865432 279999875
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.02 E-value=0.55 Score=48.33 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCeeEEeCCC-CcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCR-HVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~-H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
+...|+|-++-+++ ++++|.| +.|-+.+|.+||..+.+||+=|.++
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 34679999988888 8889987 5899999999999999999988876
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.27 E-value=0.21 Score=34.17 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh-----cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG-----INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk-----~~~tCPlCR~~ 239 (243)
+...|+||...+.++...+..- |..=||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4578999999886554444444 999999999874332 23479999753
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.15 E-value=0.53 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=29.2
Q ss_pred ccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCcc
Q 026092 195 RCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALKH 239 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~~ 239 (243)
.|.||...-.. +.++... |...||..|+.+=|... =.||.|+..
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 58899865322 3344444 99999999997644332 269999763
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.68 E-value=0.24 Score=33.87 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~~v 240 (243)
....|.||... + .++... |...||..|+..=|... =.||.|+...
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45789999752 2 333333 89999999999755432 2699998754
No 82
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.60 E-value=0.47 Score=36.12 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=30.8
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
..|.||...-...+.+.... |...||..|+.+=|..- =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 47888886433333444444 99999999998766432 27999985
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.24 E-value=0.56 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc----CCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI----NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~----~~tCPlCR~~ 239 (243)
....|.||..... ++..+... |.--||..|+..-+.. .-.||.|+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3456999987643 34344444 9999999999865532 2379999764
No 84
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.09 E-value=4.4 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCcccccccccc-----cCCCeeEEeC-CCCcccHHHHH
Q 026092 192 SGERCVICQMKY-----KRGDRQMKLP-CRHVYHSECIT 224 (243)
Q Consensus 192 ~~~~C~ICle~f-----~~ge~v~~LP-C~H~FH~~CI~ 224 (243)
....|.+|+..- ..++.++.-. |+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456899998753 1233455454 99999999995
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=75.06 E-value=0.8 Score=32.33 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred cCCCcccccccccc-cCCCeeEEeC-CCCcccHHHHHHHHhc--CCCCCccCc
Q 026092 190 KRSGERCVICQMKY-KRGDRQMKLP-CRHVYHSECITKWLGI--NKVTGLALK 238 (243)
Q Consensus 190 ~~~~~~C~ICle~f-~~ge~v~~LP-C~H~FH~~CI~~WLk~--~~tCPlCR~ 238 (243)
......|.||...- ...+.++... |.-.||..|+..-+.. .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34568999998753 2334444444 9999999999853321 126888864
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=74.06 E-value=0.33 Score=33.57 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
....|.||... + .++... |...||..|+.+=|... =.||.|+.
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999853 3 344444 99999999999655432 26998865
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=73.11 E-value=0.41 Score=32.39 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~~ 239 (243)
.+..|.||... + .++... |...||..|+.+=|... =.||.|+..
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45789999863 3 344444 99999999999755432 269988653
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.00 E-value=0.3 Score=32.66 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=30.4
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
.....|.||... + .++... |...||..|+.+=|... =.||.|++
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999864 3 343344 99999999999755432 26888864
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.88 E-value=1.1 Score=33.42 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc---CCCCCccCc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI---NKVTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~---~~tCPlCR~ 238 (243)
+...| ||......+. ++... |.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 8977655443 33333 9999999999753321 238999975
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.22 E-value=0.97 Score=34.05 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=25.7
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG 228 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk 228 (243)
..+..|.||...-.. +.++... |...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 356789999875322 2233333 999999999988764
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.20 E-value=6.5 Score=31.40 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh---------c--CCCCCccCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG---------I--NKVTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk---------~--~~tCPlCR~~ 239 (243)
..+..|.||... | .+.... |..+||..||.+=|. . .=.||+|+..
T Consensus 61 g~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 346789999753 3 344444 999999999997663 1 1279999854
No 92
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.83 E-value=1.5 Score=33.48 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=22.7
Q ss_pred ccccccccccc----C--CCeeEEeC-CCCcccHHHHHHH
Q 026092 194 ERCVICQMKYK----R--GDRQMKLP-CRHVYHSECITKW 226 (243)
Q Consensus 194 ~~C~ICle~f~----~--ge~v~~LP-C~H~FH~~CI~~W 226 (243)
..|.||+..-. . ++.++... |+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987542 1 23344444 9999999999855
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.07 E-value=1.5 Score=32.02 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCCcccccccccc-cCCCeeEEeC-CCCcccHHHHHHHHhc--CCCCCccCcc
Q 026092 191 RSGERCVICQMKY-KRGDRQMKLP-CRHVYHSECITKWLGI--NKVTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f-~~ge~v~~LP-C~H~FH~~CI~~WLk~--~~tCPlCR~~ 239 (243)
.....|.||...- ...+.++... |.-.||..|+..-+.. .=.||.|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 3567899998653 2223444444 8999999999854322 2268888653
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.31 E-value=3.5 Score=29.22 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=30.8
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh-----cCCCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG-----INKVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk-----~~~tCPlCR~~ 239 (243)
...| ||...+..+...+..- |..=||..|+.--.. ..-.||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 4456 9988875444444444 999999999963221 23589999864
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.74 E-value=1.6 Score=32.29 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALKH 239 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~~ 239 (243)
.....|.||... + .+.... |.-.||..|+.+=|..- =.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346789999854 3 344444 89999999998766432 269999853
No 96
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.29 E-value=9.4 Score=28.35 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.3
Q ss_pred CCcccccccccccC---CCeeEEeC-CCCcccHHHHHHHHh-cCCCCCccCccc
Q 026092 192 SGERCVICQMKYKR---GDRQMKLP-CRHVYHSECITKWLG-INKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~---ge~v~~LP-C~H~FH~~CI~~WLk-~~~tCPlCR~~v 240 (243)
....|-||-.+... |+..+..- |+-..|+.|..-=.+ .++.||.|+++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 45799999988654 33333233 888999999985443 567999998764
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.85 E-value=5 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCeeEEe--CCCCcccHHHHH
Q 026092 191 RSGERCVICQMKYKRGDRQMKL--PCRHVYHSECIT 224 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~L--PC~H~FH~~CI~ 224 (243)
.....|++|...+......+.. .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3567899999998876665555 499999999985
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.84 E-value=3.7 Score=27.82 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCcccccccccccC-CCeeEEeC-CCCcccHHHHHHHHhc-------CCCCCccCcc
Q 026092 192 SGERCVICQMKYKR-GDRQMKLP-CRHVYHSECITKWLGI-------NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~-ge~v~~LP-C~H~FH~~CI~~WLk~-------~~tCPlCR~~ 239 (243)
....|.||...... ...++... |.-.||..|+..=|.. .=.||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46789999976533 23344444 9999999999864421 2368888654
No 99
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.60 E-value=2.8 Score=27.35 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=29.6
Q ss_pred ccccccccccCCCeeEEeC--CCCcccHHHHHHHH----hcCCCCCccC
Q 026092 195 RCVICQMKYKRGDRQMKLP--CRHVYHSECITKWL----GINKVTGLAL 237 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP--C~H~FH~~CI~~WL----k~~~tCPlCR 237 (243)
.|.||...+.++...+..- |.-=||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789998886655544443 88899999976321 2456899986
No 100
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.32 E-value=0.93 Score=35.35 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCccC
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLAL 237 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlCR 237 (243)
....|.+|...|..-..--... ||.+|+..|.........+|-.|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 3468999999997633323333 999999999877655566666663
No 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.01 E-value=4.7 Score=31.23 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
....|.+|...|..-..--... ||++||..|.....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 4568999999998644333333 99999999977653
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.93 E-value=1 Score=32.91 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=32.3
Q ss_pred CCcccccccccccC-CCeeEEeC-CCCcccHHHHHHHHhc--------CCCCCccCcc
Q 026092 192 SGERCVICQMKYKR-GDRQMKLP-CRHVYHSECITKWLGI--------NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~-ge~v~~LP-C~H~FH~~CI~~WLk~--------~~tCPlCR~~ 239 (243)
....|.||...-.. .+.+.... |...||..|+.+=|.. .=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 35689999875332 23344444 9999999999876542 1278888653
No 103
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.69 E-value=5.4 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
....|.+|...|..-...-... ||++|+..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4568999999998644333333 99999999987654
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.62 E-value=5.9 Score=28.38 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=27.5
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
.....|.+|...|..-..--... ||++|+..|....+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeE
Confidence 35678999999998754333333 99999999987653
No 105
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.04 E-value=14 Score=28.94 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH------hc-----CCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL------GI-----NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL------k~-----~~tCPlCR~~ 239 (243)
.+..|.||... ..+.... |-..||..||.+=| +. .=.|++|+-+
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999753 3444344 89999999999753 22 1279999764
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.41 E-value=5.7 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCCcccccccccccCCCeeEEeC---CCCcccHHHHHHHHhcC----CCCCcc
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP---CRHVYHSECITKWLGIN----KVTGLA 236 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP---C~H~FH~~CI~~WLk~~----~tCPlC 236 (243)
..+..|.+|.. +..++... |-..||..|+. |... -.||.|
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 45678999983 33454443 88999999998 5432 247754
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.26 E-value=5.9 Score=28.26 Aligned_cols=37 Identities=19% Similarity=0.572 Sum_probs=26.9
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
.....|.+|...|..-..---.. ||.+|+..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 34578999999998644333333 99999999987643
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.07 E-value=2.2 Score=38.84 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc-------CCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI-------NKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~-------~~tCPlCR~~ 239 (243)
....|.+|...|..-....... ||++||..|-..++.. ..+|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4578999999987643322232 9999999999876521 2467777553
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.05 E-value=1.4 Score=31.66 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=27.0
Q ss_pred ccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC-----CCCCccCc
Q 026092 195 RCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN-----KVTGLALK 238 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~-----~tCPlCR~ 238 (243)
.|.||...-.. +.++... |...||..|+.+-|... =.||.|++
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56677654222 2233333 89999999999766532 36999986
No 110
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=55.33 E-value=11 Score=34.79 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=28.2
Q ss_pred cccccccccccCCCeeEEeCCCCc--ccHHHHHHHHhcC--CCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHV--YHSECITKWLGIN--KVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~--FH~~CI~~WLk~~--~tCPlCR~~v 240 (243)
..|+|-...++. .++...|.|+ |-..=+....... -.||+|.+.+
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 578877665444 3555569998 5544343333322 3799999876
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=54.92 E-value=13 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCeeEEeC--CCCcccHHHHHHHHhc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP--CRHVYHSECITKWLGI 229 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP--C~H~FH~~CI~~WLk~ 229 (243)
....|.+|.+.+++..-+ ..| =.|.||-.|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 457899999998885544 456 5899999999999974
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=54.64 E-value=5.8 Score=31.26 Aligned_cols=35 Identities=17% Similarity=0.498 Sum_probs=25.4
Q ss_pred CCCccccccccccc-CCCeeEEeC-CCCcccHHHHHH
Q 026092 191 RSGERCVICQMKYK-RGDRQMKLP-CRHVYHSECITK 225 (243)
Q Consensus 191 ~~~~~C~ICle~f~-~ge~v~~LP-C~H~FH~~CI~~ 225 (243)
.....|.+|...|. ....-.... |+|.+|..|-..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 35689999999994 333334444 999999998663
No 113
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.52 E-value=8.1 Score=27.61 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCcccHHHHHHH
Q 026092 191 RSGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKW 226 (243)
Q Consensus 191 ~~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~W 226 (243)
.....|.+|...|..-..---.. ||.+|+..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34578999999997643322233 9999999997654
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.62 E-value=0.81 Score=33.81 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
....|.||...-.. +.++... |...||..|+.+=|... =.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45679999875322 2344444 99999999998544322 26999865
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.80 E-value=3 Score=29.75 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=29.8
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc-----CCCCCccCc
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI-----NKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~-----~~tCPlCR~ 238 (243)
...|.||...-. +..++... |...||..|+.+=|.. .=.||.|++
T Consensus 26 ~c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 347888976422 33344444 9999999999965532 226999975
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.79 E-value=8.3 Score=27.99 Aligned_cols=35 Identities=17% Similarity=0.461 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKW 226 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~W 226 (243)
....|.+|...|..-..---.. ||.+|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4568999999998744333333 9999999997654
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.18 E-value=6.4 Score=33.00 Aligned_cols=35 Identities=23% Similarity=0.625 Sum_probs=26.3
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
...|.+|...|..-..--... ||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 479999999998644433444 99999999977543
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.02 E-value=8.1 Score=28.98 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=33.7
Q ss_pred CcccccccccccCCCeeEEe--CCCCcccHHHHHHHH----h------cCCCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKL--PCRHVYHSECITKWL----G------INKVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~L--PC~H~FH~~CI~~WL----k------~~~tCPlCR~~ 239 (243)
...|.||...+......+.. .|.-=||..|+.--- . .+-.||.|++.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 46799999998776555555 389999999986221 0 23479999764
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.82 E-value=6 Score=29.94 Aligned_cols=11 Identities=18% Similarity=1.038 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 026092 218 YHSECITKWLG 228 (243)
Q Consensus 218 FH~~CI~~WLk 228 (243)
||+.|+.+|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 120
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.72 E-value=6.1 Score=29.88 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 026092 218 YHSECITKWLG 228 (243)
Q Consensus 218 FH~~CI~~WLk 228 (243)
||+.|+.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.50 E-value=9.2 Score=26.57 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=24.4
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHH
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKW 226 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~W 226 (243)
..|.+|...|..-..---.. ||.+|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 58999999998643333333 9999999997654
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.28 E-value=7 Score=33.09 Aligned_cols=35 Identities=20% Similarity=0.628 Sum_probs=26.6
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHH
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL 227 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL 227 (243)
...|.+|...|..-..--... ||.+||..|-....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 468999999998754433444 99999999987654
No 123
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.06 E-value=4 Score=31.11 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=14.5
Q ss_pred CCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 214 CRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 214 C~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
||+.| ..=+.....||.|+..-
T Consensus 73 CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 73 CGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp TCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred CcCee-----cccCCCCCCCcCCCCCc
Confidence 88888 11123456899999864
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=49.05 E-value=17 Score=33.35 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=29.1
Q ss_pred cccccccccccCCCeeEEeCCCCc--ccHHHHHHHHhcC--CCCCccCcccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHV--YHSECITKWLGIN--KVTGLALKHNY 241 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~--FH~~CI~~WLk~~--~tCPlCR~~v~ 241 (243)
..|+|-...++. .++...|.|. |-..=+....... -.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 568877665544 3455569998 6654444443333 37999998763
No 125
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.87 E-value=4.1 Score=35.04 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=26.8
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc-----CCCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI-----NKVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~-----~~tCPlCR~~ 239 (243)
...|.+|...-. +..+.... |...||..|+.+=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 346888876422 23344444 9999999999965542 1269999864
No 126
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.32 E-value=6.8 Score=28.93 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=26.3
Q ss_pred CcccccccccccCCCeeEEeC---CC-CcccHHHHHHHHhc----CCCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLP---CR-HVYHSECITKWLGI----NKVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP---C~-H~FH~~CI~~WLk~----~~tCPlCR~~ 239 (243)
...| ||..... ++ .+... |. .-||..|+. |.. +-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3556 9987643 32 22222 54 579999998 443 2379999864
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=46.80 E-value=7.7 Score=27.09 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=26.4
Q ss_pred CcccccccccccCCCeeEEeC---CC-CcccHHHHHHHHhcC----CCCCccCcc
Q 026092 193 GERCVICQMKYKRGDRQMKLP---CR-HVYHSECITKWLGIN----KVTGLALKH 239 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP---C~-H~FH~~CI~~WLk~~----~tCPlCR~~ 239 (243)
...| ||..... ++ .+..- |. .-||..|+. |... -.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4566 8987532 32 22222 55 589999998 5432 379999864
No 128
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.71 E-value=2.6 Score=31.63 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.7
Q ss_pred ccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 195 RCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
.|.||...-.. +.+.... |...||..|+.+=|+.. -.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 67788765332 2333344 99999999998655432 26887754
No 129
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=45.03 E-value=3.9 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=28.5
Q ss_pred ccccccccccCCCeeEEeC-CCCcccHHHHHHHHhc-----CCCCCccCcc
Q 026092 195 RCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGI-----NKVTGLALKH 239 (243)
Q Consensus 195 ~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~-----~~tCPlCR~~ 239 (243)
.|.||...- .+..++... |...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567777532 223344343 8999999999965542 2279999864
No 130
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.27 E-value=6.3 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=28.6
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHHHHHHHH---------hcCCCCCccCc
Q 026092 193 GERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWL---------GINKVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WL---------k~~~tCPlCR~ 238 (243)
...| ||...... ...+..- |..=||..|+.--. ..+-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3456 89887653 2333333 99999999985211 23568999975
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.70 E-value=4.1 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHHHHHHHHh---cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLG---INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk---~~~tCPlCR~~ 239 (243)
....| ||..... ++..+... |..=||..|+.---. ..-.||.|+..
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 45677 9987654 33344343 999999999974221 23479998753
No 132
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=42.12 E-value=13 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.493 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|.-|...+...+.++. .=+..||..|. +|-.|.+++
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 34678888888877665543 34667887765 466666654
No 133
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.01 E-value=7.4 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=22.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|..|-+.+..++.+. .-+..||..|. +|-.|+++|
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L 46 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTL 46 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCcc
Confidence 356777777776655443 24566776553 355565544
No 134
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.65 E-value=12 Score=26.93 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=24.0
Q ss_pred cCCCcccccccccccC-CCeeEEeC-CCCcccHHHH
Q 026092 190 KRSGERCVICQMKYKR-GDRQMKLP-CRHVYHSECI 223 (243)
Q Consensus 190 ~~~~~~C~ICle~f~~-ge~v~~LP-C~H~FH~~CI 223 (243)
......|+.|.+.|.. .+.-...+ |+|..+..|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4567899999999875 22333444 9998887774
No 135
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.40 E-value=7.9 Score=22.53 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=20.2
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHH
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECI 223 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI 223 (243)
..|+.|....-..+++.. =+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE--CCeEecccCC
Confidence 579999888766655542 4788998883
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.16 E-value=5.3 Score=27.30 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccH-HHHHHHHhcCCCCCccCcccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHS-ECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~-~CI~~WLk~~~tCPlCR~~v~ 241 (243)
.-..|..|...+..+.-. ..=+.+|+. .|..+- -...|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAM--FGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHH--SSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCceE--CcCCeEeeCHHHHHHH--hCccCCCcCCcee
Confidence 457889998887765322 224566777 577653 3456888876554
No 137
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.89 E-value=13 Score=29.91 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCcccccccccccCC--CeeEEeCCCCcccHHHHHHHHhcCC--CCCccCc
Q 026092 192 SGERCVICQMKYKRG--DRQMKLPCRHVYHSECITKWLGINK--VTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~g--e~v~~LPC~H~FH~~CI~~WLk~~~--tCPlCR~ 238 (243)
....|.+|...|..- ....-..|+|.+|..|- .|++... .|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 568999999987652 22333339999999998 3444322 4666654
No 138
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.13 E-value=22 Score=24.66 Aligned_cols=30 Identities=23% Similarity=0.592 Sum_probs=21.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECI 223 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI 223 (243)
....|..|...+..++.+. .-+..||..|+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF 43 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF 43 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC
Confidence 4568999988877666554 34678887774
No 139
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.54 E-value=22 Score=24.69 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
....|.-|-..+..++.+.. -+..||..|+ +|-.|+++|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCc
Confidence 34678888888776665443 3667776663 466666554
No 140
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.07 E-value=28 Score=28.23 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCeeEEeC---CCCcccHHHHHHHHhc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP---CRHVYHSECITKWLGI 229 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP---C~H~FH~~CI~~WLk~ 229 (243)
.+..|.||-+ |..+.... |...|+..||+.++..
T Consensus 78 ~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4578999975 34555554 8999999999999864
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.66 E-value=16 Score=24.83 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.1
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcCCCCCcc
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGINKVTGLA 236 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~~tCPlC 236 (243)
..|--|+..|.... ....| |++.|+.+|=.---.+-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986422 24455 99999999954322344689987
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.60 E-value=3.4 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=28.6
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHHHHHHHHhcC----CCCCccCc
Q 026092 194 ERCVICQMKYKRGDRQMKLP-CRHVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LP-C~H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
..|.||...-..+ .++... |...||..|+.+=|... =.||.|+.
T Consensus 59 ~~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 4688887653333 333333 99999999999644332 25888864
No 143
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.46 E-value=7.9 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCcccccccccccCCCeeEEe---CCCCcccHHHHHHHHh---------cCCCCCccCcc
Q 026092 192 SGERCVICQMKYKRGDRQMKL---PCRHVYHSECITKWLG---------INKVTGLALKH 239 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~L---PC~H~FH~~CI~~WLk---------~~~tCPlCR~~ 239 (243)
....| ||......+. .+.. .|..=||..|+.---+ .+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 8988744432 2222 3999999999963211 24579999754
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.66 E-value=12 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=25.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccccC
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNYIL 243 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~il 243 (243)
..|++|..++....... ++..|-.. ++...-||-|.++|-+|
T Consensus 33 ~~CP~Cq~eL~~~g~~~-------hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHA-------RCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEETTEE-------EETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceecCCEE-------ECccccch-hhccccCcchhhHHHHH
Confidence 68999987765422222 23333222 34556799999988664
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.19 E-value=23 Score=23.57 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=6.3
Q ss_pred cccccccccccC
Q 026092 194 ERCVICQMKYKR 205 (243)
Q Consensus 194 ~~C~ICle~f~~ 205 (243)
..|.-|-..+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 455555555543
No 146
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.38 E-value=36 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=33.5
Q ss_pred CcccccccccccC-CCeeEEeCCCCcccHHHHHHHHhcCCCCCccCcccc
Q 026092 193 GERCVICQMKYKR-GDRQMKLPCRHVYHSECITKWLGINKVTGLALKHNY 241 (243)
Q Consensus 193 ~~~C~ICle~f~~-ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v~ 241 (243)
-..|..|...+.+ +... ...=+.+||..|..+-+..+..|-.|.++|.
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 4678888877753 2222 2235678899999887776668999988774
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=45 Score=22.64 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=21.1
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
..|..|...+..++.++ ..=+..||..|. +|-.|+++|
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCC
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCcc
Confidence 46777777766554432 224566675553 355555544
No 148
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.19 E-value=15 Score=22.24 Aligned_cols=8 Identities=25% Similarity=0.442 Sum_probs=3.6
Q ss_pred cccccccc
Q 026092 194 ERCVICQM 201 (243)
Q Consensus 194 ~~C~ICle 201 (243)
..|+||+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 34444443
No 149
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.15 E-value=9.9 Score=26.49 Aligned_cols=18 Identities=6% Similarity=-0.444 Sum_probs=12.8
Q ss_pred HHHHhcCCCCCccCcccc
Q 026092 224 TKWLGINKVTGLALKHNY 241 (243)
Q Consensus 224 ~~WLk~~~tCPlCR~~v~ 241 (243)
++||..--.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456666668999988764
No 150
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=23 Score=23.48 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=5.1
Q ss_pred ccccccccccC
Q 026092 195 RCVICQMKYKR 205 (243)
Q Consensus 195 ~C~ICle~f~~ 205 (243)
.|..|...+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4k_A 7 GCQECKKTIMP 17 (72)
T ss_dssp CBSSSCCCCCS
T ss_pred CCccCCCcccC
Confidence 44445444443
No 151
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.38 E-value=39 Score=31.17 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCeeEEeC---CCCcccHHHHHHHHhcC----------CCCCccCc
Q 026092 192 SGERCVICQMKYKRGDRQMKLP---CRHVYHSECITKWLGIN----------KVTGLALK 238 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LP---C~H~FH~~CI~~WLk~~----------~tCPlCR~ 238 (243)
.+..|.||-+. ..+.... |...||..||..++... =.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45789999753 3344443 99999999999999421 26777764
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.34 E-value=28 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=14.7
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHHHHHHH
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSECITKWL 227 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WL 227 (243)
..|..|...+..+. . ...=+.+|+..|..+-+
T Consensus 32 F~C~~C~~~L~~~~-f-~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIG-F-VKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSC-C-EEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCc-c-EeECCeEECHHHhhhhc
Confidence 45555555544432 1 11234455555555443
No 153
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.60 E-value=35 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=22.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|.-|-+.+.. + .+..-+..||..|. +|-.|+++|
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCC
Confidence 4578888777664 2 22335677777664 466666553
No 154
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.54 E-value=22 Score=23.61 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.1
Q ss_pred ccccccccccC
Q 026092 195 RCVICQMKYKR 205 (243)
Q Consensus 195 ~C~ICle~f~~ 205 (243)
.|.-|...+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1wyh_A 7 GCSACGETVMP 17 (72)
T ss_dssp BCSSSCCBCCS
T ss_pred CCccCCCcccc
Confidence 44444444443
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.47 E-value=46 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.610 Sum_probs=16.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHH
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSEC 222 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~C 222 (243)
...|.-|...+...+.++. .-+..||..|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc
Confidence 4577777777665444332 2455666655
No 156
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=26.37 E-value=35 Score=24.63 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=28.1
Q ss_pred CcccccccccccCCC---eeEEeCCCCcccHHHHHHHHhcCCCCCc
Q 026092 193 GERCVICQMKYKRGD---RQMKLPCRHVYHSECITKWLGINKVTGL 235 (243)
Q Consensus 193 ~~~C~ICle~f~~ge---~v~~LPC~H~FH~~CI~~WLk~~~tCPl 235 (243)
...|.+|.+...... ..+-+-|+-.+|..|+.+. ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 468999988754322 2444459999999999985 555654
No 157
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.02 E-value=24 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCcccccccccccCCCeeEEeCC-CCcccHHHHHHH
Q 026092 192 SGERCVICQMKYKRGDRQMKLPC-RHVYHSECITKW 226 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC-~H~FH~~CI~~W 226 (243)
+..=|.||.++ -.++-+.| +-+||..|...-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34579999887 33666678 889999998763
No 158
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.63 E-value=14 Score=21.49 Aligned_cols=9 Identities=0% Similarity=-0.348 Sum_probs=6.2
Q ss_pred CCCCccCcc
Q 026092 231 KVTGLALKH 239 (243)
Q Consensus 231 ~tCPlCR~~ 239 (243)
.+||+|+..
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 468888764
No 159
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.92 E-value=44 Score=24.83 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=10.3
Q ss_pred CcccHHHHHHHHhcCCCCCccCccc
Q 026092 216 HVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 216 H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
.+|+..|..+-+.....|..|.++|
T Consensus 52 ~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 52 RKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp EEECHHHHHHHHCCCEECTTTCCEE
T ss_pred EEeecCchhhhCCCccChhhcCCcc
Confidence 3444444444332222455554443
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.91 E-value=33 Score=25.61 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHHHHHHHHh
Q 026092 192 SGERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLG 228 (243)
Q Consensus 192 ~~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk 228 (243)
.-..|..|...+..++..... =+.+||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhc
Confidence 456788887777655544322 466777778777664
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.95 E-value=34 Score=24.02 Aligned_cols=13 Identities=38% Similarity=0.536 Sum_probs=6.1
Q ss_pred cccccccccccCC
Q 026092 194 ERCVICQMKYKRG 206 (243)
Q Consensus 194 ~~C~ICle~f~~g 206 (243)
..|.-|-..+...
T Consensus 16 ~~C~~C~~~I~~~ 28 (91)
T 2d8y_A 16 ETCVECQKTVYPM 28 (91)
T ss_dssp CBCTTTCCBCCTT
T ss_pred CcCccCCCccCCc
Confidence 3455555544433
No 162
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=23.74 E-value=72 Score=22.87 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=20.4
Q ss_pred CcccccccccccCCCeeEEeC---CCCcccHHHHHH
Q 026092 193 GERCVICQMKYKRGDRQMKLP---CRHVYHSECITK 225 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP---C~H~FH~~CI~~ 225 (243)
...|.||... ..|-.+ ... |.-.||..|..+
T Consensus 17 ~l~C~iC~~~-~~GAci-qC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASI-QCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEE-ECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeE-ecCCCCCCCcCcHHHHHH
Confidence 4689999643 113222 222 889999999876
No 163
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.59 E-value=3.8 Score=28.22 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=29.9
Q ss_pred cCCCccccccccc-ccCCCeeEEeCCCCcccHHHHHHHH-hcCC---CCCccCc
Q 026092 190 KRSGERCVICQMK-YKRGDRQMKLPCRHVYHSECITKWL-GINK---VTGLALK 238 (243)
Q Consensus 190 ~~~~~~C~ICle~-f~~ge~v~~LPC~H~FH~~CI~~WL-k~~~---tCPlCR~ 238 (243)
+.+...|.||+.+ |.+|---.-.-|.-.|+..|--.|- +.++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3456899999875 3333322222377788888877665 3333 5777765
No 164
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.09 E-value=15 Score=23.67 Aligned_cols=8 Identities=0% Similarity=-0.251 Sum_probs=6.4
Q ss_pred CCCccCcc
Q 026092 232 VTGLALKH 239 (243)
Q Consensus 232 tCPlCR~~ 239 (243)
.||+|..+
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999764
No 165
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.55 E-value=36 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=22.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHHHHHHHHhcCCCCCccCccc
Q 026092 193 GERCVICQMKYKRGDRQMKLPCRHVYHSECITKWLGINKVTGLALKHN 240 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LPC~H~FH~~CI~~WLk~~~tCPlCR~~v 240 (243)
...|.-|-..+.....+. .-+..||..|+ +|-.|+++|
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS--------BCTTTCCBG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc--------CcCcCCCcc
Confidence 357777877766543222 25667776663 466666554
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.07 E-value=16 Score=25.08 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=6.2
Q ss_pred cccccccccccCCC
Q 026092 194 ERCVICQMKYKRGD 207 (243)
Q Consensus 194 ~~C~ICle~f~~ge 207 (243)
..|..|.+.+..++
T Consensus 8 ~~C~~C~~~I~~~~ 21 (81)
T 1a7i_A 8 NKCGACGRTVYHAE 21 (81)
T ss_dssp CBCSSSCCBCSSTT
T ss_pred CcCcCcCccccCce
Confidence 34445544444333
No 167
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.95 E-value=9.4 Score=25.55 Aligned_cols=16 Identities=6% Similarity=-0.444 Sum_probs=10.3
Q ss_pred HHHhcCCCCCccCccc
Q 026092 225 KWLGINKVTGLALKHN 240 (243)
Q Consensus 225 ~WLk~~~tCPlCR~~v 240 (243)
+||..--.||.|+.++
T Consensus 5 ~~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 5 AGLLEILACPACHAPL 20 (56)
T ss_dssp CSCTTSCCCSSSCSCE
T ss_pred HHHHhheeCCCCCCcc
Confidence 3444445788888775
No 168
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.84 E-value=46 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=12.6
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHH
Q 026092 194 ERCVICQMKYKRGDRQMKLPCRHVYHSEC 222 (243)
Q Consensus 194 ~~C~ICle~f~~ge~v~~LPC~H~FH~~C 222 (243)
..|.-|-..+. ++.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~-~~~v--~a~~~~~H~~C 41 (79)
T 2cor_A 16 YICQKCHAIID-EQPL--IFKNDPYHPDH 41 (79)
T ss_dssp CBCTTTCCBCC-SCCC--CCSSSCCCTTT
T ss_pred CCCccCCCEec-ceEE--EECcceeCCCC
Confidence 45666666555 2222 22455566544
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.52 E-value=57 Score=21.87 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=13.6
Q ss_pred cccccccccccC--CCeeEEeCCCCcccHHHH
Q 026092 194 ERCVICQMKYKR--GDRQMKLPCRHVYHSECI 223 (243)
Q Consensus 194 ~~C~ICle~f~~--ge~v~~LPC~H~FH~~CI 223 (243)
..|..|-..+.. .... +..-+..||..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF 36 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF 36 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC
Confidence 456666665553 1122 1224555665553
No 170
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.34 E-value=11 Score=25.21 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=25.1
Q ss_pred CcccccccccccCCCeeEEeC---CC-CcccHHHHHHHHhcC----CCCCccCc
Q 026092 193 GERCVICQMKYKRGDRQMKLP---CR-HVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP---C~-H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
...| ||..... + ..+... |. .-||..|+. |... -.||.|++
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3455 8987532 3 232222 44 579999998 5432 37998865
No 171
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.23 E-value=26 Score=25.85 Aligned_cols=7 Identities=29% Similarity=1.198 Sum_probs=3.4
Q ss_pred ccccccc
Q 026092 194 ERCVICQ 200 (243)
Q Consensus 194 ~~C~ICl 200 (243)
..||+|.
T Consensus 48 ~~CPvCg 54 (112)
T 1l8d_A 48 GKCPVCG 54 (112)
T ss_dssp EECTTTC
T ss_pred CCCCCCC
Confidence 3455553
No 172
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.21 E-value=14 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.522 Sum_probs=26.0
Q ss_pred CcccccccccccCCC--eeEEeC---CCCcccHHHHHHHHhc
Q 026092 193 GERCVICQMKYKRGD--RQMKLP---CRHVYHSECITKWLGI 229 (243)
Q Consensus 193 ~~~C~ICle~f~~ge--~v~~LP---C~H~FH~~CI~~WLk~ 229 (243)
...|+-|...++..+ .-++.. |++.|+..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 467888877766543 233444 8899999999998653
No 173
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.21 E-value=28 Score=28.48 Aligned_cols=8 Identities=0% Similarity=-0.110 Sum_probs=6.2
Q ss_pred CCCccCcc
Q 026092 232 VTGLALKH 239 (243)
Q Consensus 232 tCPlCR~~ 239 (243)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 78888775
No 174
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.13 E-value=12 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=25.6
Q ss_pred CcccccccccccCCCeeEEeC---CC-CcccHHHHHHHHhcC----CCCCccCc
Q 026092 193 GERCVICQMKYKRGDRQMKLP---CR-HVYHSECITKWLGIN----KVTGLALK 238 (243)
Q Consensus 193 ~~~C~ICle~f~~ge~v~~LP---C~-H~FH~~CI~~WLk~~----~tCPlCR~ 238 (243)
...| ||.... .| ..+... |. .-||..|+. |... -.||.|++
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 998754 23 232222 55 689999998 4432 37999875
Done!