BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026094
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein
YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907)
From Clostridium Acetobutylicum At 1.31 A Resolution
Length = 144
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 89 AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
A D S G+A +F HT+A +TINEN D DV D L+K+ P + +KH +EG
Sbjct: 39 AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 94
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
+ AHIK+S+ G + I I +G+L +GTWQ ++
Sbjct: 95 -NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIY 127
>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
pdb|1XBF|B Chain B, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
pdb|1XBF|C Chain C, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
Length = 140
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 89 AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
A D S G A +F HT+A +TINEN D DV D L+K+ P + +KH +EG
Sbjct: 27 AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 82
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
+ AHIK+S+ G + I I +G+L +GTWQ ++
Sbjct: 83 -NSHAHIKASLXGSSQQIIIENGKLKLGTWQGIY 115
>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
pdb|1VMF|B Chain B, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
pdb|1VMF|C Chain C, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
Length = 145
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 12/91 (13%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT----LEGPDDMPA 153
G+A + LHT+A +T+NEN D DV+ D L+++ P W H +EG + A
Sbjct: 45 GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP------WHHENDRHMEG--NTAA 96
Query: 154 HIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
H+K+S G T+ I++G+L +GTWQ ++ C
Sbjct: 97 HLKTSTVGHAQTLIISEGRLVLGTWQGVYFC 127
>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase
(Tm0723) From Thermotoga Maritima Msb8 At 1.52 A
Resolution
Length = 151
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 74 RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
RR ITP +++E ++ S K GL +H +AS+ IN++ + + D E +L K+
Sbjct: 27 RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
PE + +KH G D+ AH+K ++ G + I ITD ++++G W+++
Sbjct: 84 PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQV 131
>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5.
pdb|2P6C|B Chain B, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5
Length = 137
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 74 RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
RR IT ++ K + + SE K GL + +H ++S+ I ++ + + +D +L K+
Sbjct: 15 RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
P +KH G D+ AH+K+ + + +PIT+G+L++G WQE+
Sbjct: 72 P--YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEI 117
>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From
Sulfolobus Tokodaii
Length = 134
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 84 IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
I +++++ + G+AH+ + HT+ ++ INE +S + D + K+VP ++H
Sbjct: 21 ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP--DGEFEH 77
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
+ ++ AH+ S++ G + +PI +G+L++GTWQ +
Sbjct: 78 NII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRI 114
>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|B Chain B, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|C Chain C, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|D Chain D, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|E Chain E, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|F Chain F, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
Length = 149
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 85 VKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144
V++I + S K G+ +F+ H++A++ NE ++ + +D T + + RS WKH
Sbjct: 37 VEQIVEK-SGIKNGICLIFVAHSTAAIVANE-HERGLMEDILTKIKEFTEPSRS--WKHN 92
Query: 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
L D+ AH+ ++ G P+ +G+L GTWQ +
Sbjct: 93 L-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNI 128
>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
pdb|2P6H|B Chain B, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
Length = 134
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL +++ HT+A++ +NE + + +D F+ ++ G WKH L + AH+ +
Sbjct: 35 GLLVVYVPHTTAAVAVNE-AEPRLMEDIVEFIRELTKPG--GPWKHNLVDVNAH-AHLGN 90
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
++ G + IP+ G+L++GTWQ +
Sbjct: 91 TIIGDSRVIPVVGGRLSLGTWQRI 114
>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
pdb|2CU5|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
pdb|2CU5|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
Length = 129
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL +LF+ HT+ LT+ E D V D L ++ P R +H LEG + AH+KS
Sbjct: 32 GLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQD-RH-LEG--NSHAHLKS 87
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
+ G L + G+L +G WQ++
Sbjct: 88 LLTGVHLLLLAEKGRLRLGRWQQV 111
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 22/144 (15%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEG----- 147
S FK + L S TI + YD +D I E A +K E
Sbjct: 211 SSFKLAIDKKLNLFLSTKNTILKKYDGRFKD--------IFQEVYEAQYKSKFEQLGIHY 262
Query: 148 ----PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRA 203
DDM A + S G + + DG + + G + L+TS+L + D
Sbjct: 263 EHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTF--E 320
Query: 204 SRCTHSSQSRHHSQWNMIQIGDEC 227
S H + +RH+ ++ Q G+E
Sbjct: 321 SEAAHGTVTRHYRKY---QKGEET 341
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 86 KEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN---KIVPEGRSAS 140
KE +D + F GL + ++ S TI + YD +D+ E K E +
Sbjct: 189 KESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLT 248
Query: 141 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMA 200
++H L DDM A G DG + T + +G + L+TS+L +AD
Sbjct: 249 YEHRL--IDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTV 306
Query: 201 VRASRCTHSSQSRHHSQWN 219
+ H + +RH+ Q+
Sbjct: 307 --EAEAAHGTVTRHYRQYQ 323
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E ++ ++H L D
Sbjct: 192 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRL--ID 249
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 250 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV--EAEAAHG 307
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 308 TVTRH---YRMYQKGQE 321
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 200 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 257
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 258 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 315
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 316 TVTRH---YRMYQKGQE 329
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>pdb|2O14|A Chain A, X-Ray Crystal Structure Of Protein Yxim_bacsu From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr595
Length = 375
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 75 RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN---- 130
+G TP+ +++A + K T ++ T N + + + + T N
Sbjct: 42 KGYGFQTPENXRDVAASGAGVKSDAVEFLAYGTKSNNTFNVDLPNGLYEVKVTLGNTARA 101
Query: 131 KIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTS 190
+ EG T +G +D T IP+TDGQLN+ + G L++
Sbjct: 102 SVAAEGVFQVINXTGDGAED------------TFQIPVTDGQLNLLVTEGKAGTAFTLSA 149
Query: 191 L 191
L
Sbjct: 150 L 150
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 79 LITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNK 131
+I P+ K++ QDL +FK + H+ NE + + +++ ETF+NK
Sbjct: 352 VINPEKDKDMVQDLLDFKDKVDHVI----EVCFQKNERFVNLMKESFETFINK 400
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 79 LITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNK 131
+I P+ K++ QDL +FK + H+ NE + + +++ ETF+NK
Sbjct: 335 VINPEKDKDMVQDLLDFKDKVDHVI----EVCFQKNERFVNLMKESFETFINK 383
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 112 TINENYDSDVRDD-TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITD 170
TI++ YD +D E + N+ + + + ++ DD A I S G D
Sbjct: 212 TISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWACKNYD 271
Query: 171 GQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQ 217
G + G + ++TS+L S D A+ H + +RH+ +
Sbjct: 272 GDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAA---HGTVTRHYYK 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,909,174
Number of Sequences: 62578
Number of extensions: 203185
Number of successful extensions: 471
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 20
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)