BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026094
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1
Length = 142
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 86/118 (72%), Gaps = 3/118 (2%)
Query: 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
Q+ +TL +G ++IT +VK++ + L F G + F+ HTSA+LTINEN+D+D R D
Sbjct: 5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63
Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
L+KIVPE SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ++
Sbjct: 64 MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQ 119
>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3
SV=1
Length = 138
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQ
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115
>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1
Length = 138
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQ
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115
>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1
Length = 138
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQ
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115
>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1
Length = 138
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQ
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115
>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1880 PE=3 SV=1
Length = 147
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 58 ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
A+ R Q+ + + + H KI + + Q S K GL +F+ HTSASL I EN
Sbjct: 5 AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62
Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
D DV D F ++VPE GR ++H+ EG DDMPAHI+S++ + IPI +G+L +G
Sbjct: 63 DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120
Query: 177 TWQ 179
TWQ
Sbjct: 121 TWQ 123
>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1081 PE=3 SV=1
Length = 138
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 9/103 (8%)
Query: 80 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
ITP I+ I++ S+ K G+A +++ HT+A +TINEN D V+ D FL+ ++P+
Sbjct: 23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76
Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
+W T LEG D AHIKSS+ GC+ TI I DG+ +GTWQ +
Sbjct: 77 NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGI 117
>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3
SV=2
Length = 132
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 84 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
I +E+ L E G A ++ HT+A +TINEN D DV+ D +++ P W
Sbjct: 18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71
Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
+H L+ + AH+KSS G + + + +G+L +GTWQ ++ C
Sbjct: 72 EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFC 116
>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2050 PE=3 SV=1
Length = 126
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 94 EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT-LEGPDDMP 152
E + GL ++ HT+ +L INE + + +D F+ K+VP G+ +KH L+ D
Sbjct: 25 ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79
Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
AH+K+++ G ++ +P+ G+L +GTWQ +
Sbjct: 80 AHLKATLLGNSVVVPVESGKLALGTWQRI 108
>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_771 PE=3 SV=1
Length = 143
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 72 PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
PLR R LI + + S + G+ ++F H+++++ INEN +S + D E+ L
Sbjct: 15 PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73
Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
VP AS+ H ++ +H+++ + G + T+P+ +G +++GTWQ +
Sbjct: 74 EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSI 122
>sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium
discoideum GN=idhM PE=3 SV=1
Length = 428
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 95 FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE--GRSASW-KHTLEGPDDM 151
F+ + + L+ S TI + YD +D + + G W +H L DDM
Sbjct: 218 FQYAIDKKYPLYLSTKNTILKKYDGQFKDIFQEIYEREYSTKFGELGIWYEHRL--IDDM 275
Query: 152 PAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQ 211
A S G DG + + +G + L+TS+LT+AD A AS T +
Sbjct: 276 VAFALKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLTNADGVFASEASHGTVTRH 335
Query: 212 SRHHSQWN 219
R H + N
Sbjct: 336 FREHQKGN 343
>sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida
tropicalis GN=IDP1 PE=3 SV=1
Length = 430
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAS-------WKHTL 145
+ FK LA L+ S TI + YD +D +I + +A ++H L
Sbjct: 220 ASFKMALAKGLPLYMSTKNTILKKYDGRFKD----IFQQIYEQDYAAEFEKQGLWYEHRL 275
Query: 146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASR 205
DDM A + S G + + DG + + G + L+TS L + D +
Sbjct: 276 --IDDMVAQMIKSKGGFVMALKNYDGDVQSDIVAQGFGSLGLMTSALMTPDGK--AYEAE 331
Query: 206 CTHSSQSRHHSQ 217
H + +RH+ Q
Sbjct: 332 AAHGTVTRHYRQ 343
>sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis
GN=icd PE=3 SV=1
Length = 409
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 86 KEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN---KIVPEGRSAS 140
KE +D + F GL + ++ S TI + YD +D+ E K E +
Sbjct: 189 KESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLT 248
Query: 141 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMA 200
++H L DDM A G DG + T + +G + L+TS+L +AD
Sbjct: 249 YEHRL--IDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTV 306
Query: 201 VRASRCTHSSQSRHHSQWN 219
+ H + +RH+ Q+
Sbjct: 307 --EAEAAHGTVTRHYRQYQ 323
>sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=icd PE=3 SV=1
Length = 409
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 86 KEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN---KIVPEGRSAS 140
KE +D + F GL + ++ S TI + YD +D+ E K E +
Sbjct: 189 KESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLT 248
Query: 141 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMA 200
++H L DDM A G DG + T + +G + L+TS+L +AD
Sbjct: 249 YEHRL--IDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTV 306
Query: 201 VRASRCTHSSQSRHHSQWN 219
+ H + +RH+ Q+
Sbjct: 307 --EAEAAHGTVTRHYRQYQ 323
>sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IDP1 PE=1
SV=1
Length = 428
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 22/144 (15%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEG----- 147
S FK + L S TI + YD +D I E A +K E
Sbjct: 212 SSFKLAIDKKLNLFLSTKNTILKKYDGRFKD--------IFQEVYEAQYKSKFEQLGIHY 263
Query: 148 ----PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRA 203
DDM A + S G + + DG + + G + L+TS+L + D
Sbjct: 264 EHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTF--E 321
Query: 204 SRCTHSSQSRHHSQWNMIQIGDEC 227
S H + +RH+ ++ Q G+E
Sbjct: 322 SEAAHGTVTRHYRKY---QKGEET 342
>sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1
PE=2 SV=2
Length = 414
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E R ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEARKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH+ M Q G E
Sbjct: 311 TVTRHY---RMYQKGQE 324
>sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IDP3 PE=1 SV=1
Length = 420
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA---SWKHTLEGPD 149
+ F+ L L + TI +NYD+ + + +K E A +++H L D
Sbjct: 195 ASFELALKRKLPLFFTTKNTILKNYDNQFKQIFDNLFDKEYKEKFQALKITYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A + S G + + DG + + G + L+TS+L + D S H
Sbjct: 253 DMVAQMLKSKGGFIIAMKNYDGDVQSDIVAQGFGSLGLMTSILITPDGKTF--ESEAAHG 310
Query: 210 SQSRHHSQ 217
+ +RH +
Sbjct: 311 TVTRHFRK 318
>sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1
PE=1 SV=2
Length = 414
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQKICYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis
GN=IDP2 PE=1 SV=3
Length = 411
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 25/137 (18%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAS------------ 140
S F+ + L +S TI + YD +D + EG AS
Sbjct: 197 SSFQLAIERKLNLFSSTKNTILKKYDGKFKD---------IFEGLYASKYKTKMDELGIW 247
Query: 141 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMA 200
++H L DDM A + S G + + DG + + G + L+TS+L + D
Sbjct: 248 YEHRL--IDDMVAQMLKSKGGYIIAMKNYDGDVQSDIVAQGFGSLGLMTSVLVTPDGKAF 305
Query: 201 VRASRCTHSSQSRHHSQ 217
S H + +RH+ Q
Sbjct: 306 --ESEAAHGTVTRHYRQ 320
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1
PE=2 SV=1
Length = 414
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E ++ ++H L D
Sbjct: 195 SSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSEFEAQNIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH+ M Q G E
Sbjct: 311 TVTRHY---RMYQKGQE 324
>sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1
PE=1 SV=2
Length = 414
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1
PE=2 SV=1
Length = 414
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E ++ ++H L D
Sbjct: 195 SSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>sp|P67122|Y2586_MYCBO UPF0047 protein Mb2586c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2586c PE=3 SV=1
Length = 129
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
+ ++T+P++ GQ +GTWQ +
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSI 108
>sp|P67121|Y2556_MYCTU UPF0047 protein Rv2556c/MT2633 OS=Mycobacterium tuberculosis
GN=Rv2556c PE=3 SV=1
Length = 129
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
+ ++T+P++ GQ +GTWQ +
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSI 108
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus
GN=Idh1 PE=1 SV=1
Length = 414
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSKFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMYQKGQE 324
>sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IDP2 PE=1
SV=2
Length = 412
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 95 FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAS---WKHTLEGPDDM 151
F+ + L+++ TI + YD +D E + E + ++H L DDM
Sbjct: 197 FELAIERKLPLYSTTKNTILKKYDGKFKDVFEAMYARSYKEKFESLGIWYEHRL--IDDM 254
Query: 152 PAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQ 211
A + S G + + DG + + G + L+TS+L + D S H +
Sbjct: 255 VAQMLKSKGGYIIAMKNYDGDVESDIVAQGFGSLGLMTSVLITPDGKTF--ESEAAHGTV 312
Query: 212 SRHHSQ 217
+RH Q
Sbjct: 313 TRHFRQ 318
>sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium
discoideum GN=idhC PE=1 SV=1
Length = 412
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 105 LHTSASLTINENYDSDVRDDTETFLN---KIVPEGRSASWKHTLEGPDDMPAHIKSSMFG 161
L+ S TI + YD +D + K+ + ++H L DDM A+ S G
Sbjct: 208 LYLSTKNTILKRYDGRFKDIFQEIYEREYKVKFDTAGIWYEHRL--IDDMVAYAMKSEGG 265
Query: 162 CTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQ 217
DG + + +G + L+TS+L SAD ++ AS T + R H +
Sbjct: 266 FVWACKNYDGDVQSDAVAQGYGSLGLMTSVLLSAD-SLVAEASHGTVTRHFREHQK 320
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus
GN=IDH1 PE=2 SV=1
Length = 414
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMHQKGQE 324
>sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster
GN=IDH1 PE=3 SV=1
Length = 414
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP---EGRSASWKHTLEGPD 149
S F+ L+ + L+ S TI + YD +D + +K E + ++H L D
Sbjct: 195 SSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRL--ID 252
Query: 150 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHS 209
DM A S G DG + + + +G + ++TS+L D + H
Sbjct: 253 DMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV--EAEAAHG 310
Query: 210 SQSRHHSQWNMIQIGDE 226
+ +RH + M Q G E
Sbjct: 311 TVTRH---YRMHQKGQE 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,374,513
Number of Sequences: 539616
Number of extensions: 3528090
Number of successful extensions: 13787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 13613
Number of HSP's gapped (non-prelim): 174
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)