Query 026094
Match_columns 243
No_of_seqs 163 out of 1102
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0432 Uncharacterized conser 100.0 3.8E-51 8.3E-56 339.6 14.6 124 61-189 1-125 (137)
2 TIGR00149 TIGR00149_YbjQ secon 100.0 5.9E-47 1.3E-51 311.9 14.0 118 67-189 2-120 (132)
3 PF01894 UPF0047: Uncharacteri 100.0 3.3E-46 7.1E-51 302.3 11.1 107 78-188 1-107 (118)
4 KOG3267 Uncharacterized conser 100.0 1.9E-41 4.2E-46 276.0 8.7 126 65-190 1-126 (138)
5 COG4741 Predicted secreted end 31.6 56 0.0012 29.0 3.4 63 130-204 93-155 (175)
6 COG3292 Predicted periplasmic 22.0 46 0.001 34.9 1.3 21 169-189 215-235 (671)
7 PF03460 NIR_SIR_ferr: Nitrite 19.9 95 0.0021 21.9 2.3 22 170-191 38-59 (69)
8 PF07894 DUF1669: Protein of u 18.3 2.1E+02 0.0046 27.2 4.7 54 68-135 123-177 (284)
9 PF00688 TGFb_propeptide: TGF- 16.3 2.3E+02 0.0051 23.7 4.2 39 63-103 163-201 (238)
10 TIGR03820 lys_2_3_AblA lysine- 15.0 2.3E+02 0.005 28.1 4.3 55 68-130 218-273 (417)
No 1
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-51 Score=339.65 Aligned_cols=124 Identities=41% Similarity=0.656 Sum_probs=120.5
Q ss_pred CeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (243)
Q Consensus 61 M~v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~ 139 (243)
|+|+|++|+|+|+++ +++|||++|+++|++ |||++|+|+||++||||||+||| +||+|++||+++|++|+|++.
T Consensus 1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~-- 75 (137)
T COG0432 1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA-- 75 (137)
T ss_pred CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence 789999999999987 999999999999998 99999999999999999999999 699999999999999999985
Q ss_pred CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT 189 (243)
Q Consensus 140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~ 189 (243)
.|+|+.+|+|||+|||||+|+|+|++|||.||||.|||||+|||+|||+.
T Consensus 76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~ 125 (137)
T COG0432 76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGP 125 (137)
T ss_pred CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCC
Confidence 69999999999999999999999999999999999999999999999975
No 2
>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme. Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.
Probab=100.00 E-value=5.9e-47 Score=311.92 Aligned_cols=118 Identities=38% Similarity=0.597 Sum_probs=111.7
Q ss_pred EEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeCc
Q 026094 67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL 145 (243)
Q Consensus 67 tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~~ 145 (243)
+|++.|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+||||+||+|+.||+++|+||+|++. +|+|+
T Consensus 2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~- 76 (132)
T TIGR00149 2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD- 76 (132)
T ss_pred EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence 46777765 6999999999999998 999999999999999999999999999999999999999999874 69998
Q ss_pred cCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094 146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT 189 (243)
Q Consensus 146 eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~ 189 (243)
+++|||+|||||+|+|+|++|||.||+|.||+||+|||||||+.
T Consensus 77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~Dg~ 120 (132)
T TIGR00149 77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFDGP 120 (132)
T ss_pred CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECCCC
Confidence 88999999999999999999999999999999999999999975
No 3
>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast.; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.
Probab=100.00 E-value=3.3e-46 Score=302.30 Aligned_cols=107 Identities=44% Similarity=0.724 Sum_probs=95.0
Q ss_pred EeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeCccCCCCchhhhhh
Q 026094 78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157 (243)
Q Consensus 78 ~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~~eG~DN~~AHLKS 157 (243)
||||++|+++|++ ||+++|+|+||++||||||+||||+||+|++||+++|+||+|++. +|+|+.+|+|||+||+||
T Consensus 1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks 76 (118)
T PF01894_consen 1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS 76 (118)
T ss_dssp EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence 7999999999998 999999999999999999999999999999999999999999984 799999999999999999
Q ss_pred hccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 158 SMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 158 sLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
+|+|+|++|||.||+|.||+||+|||+|||+
T Consensus 77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~dg 107 (118)
T PF01894_consen 77 SLIGPSLTVPVHDGKLALGTWQGIYLVEFDG 107 (118)
T ss_dssp HHH-SEEEEEEETTEE---TTEEEEEEESS-
T ss_pred HhcCCeEEEEEECCEEccCCcCEEEEEECCC
Confidence 9999999999999999999999999999998
No 4
>KOG3267 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-41 Score=276.02 Aligned_cols=126 Identities=63% Similarity=1.099 Sum_probs=120.9
Q ss_pred EEEEEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeC
Q 026094 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144 (243)
Q Consensus 65 ~~tItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~ 144 (243)
|++|++...++||+.||+++.+.++++.+.+..|++++|.+||+|+|+||||+||+++.|++.+|+|+||++.+.+|+|.
T Consensus 1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht 80 (138)
T KOG3267|consen 1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT 80 (138)
T ss_pred CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence 57899998889999999999999988889999999999999999999999999999999999999999999876799999
Q ss_pred ccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecccc
Q 026094 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTS 190 (243)
Q Consensus 145 ~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~~ 190 (243)
.||+||||||+||+|+|+++||||.+|||.|||||+|+|+|||...
T Consensus 81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p 126 (138)
T KOG3267|consen 81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAP 126 (138)
T ss_pred ccCcccchhhhhhccccceEEEEeccCeecccccccchhhhhhcCC
Confidence 9999999999999999999999999999999999999999999763
No 5
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=31.60 E-value=56 Score=28.98 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred HhhCCCCCCCCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecccccccccccccceecc
Q 026094 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRAS 204 (243)
Q Consensus 130 erLVP~~~~~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~~~~~~~~~~~~~~~~ 204 (243)
++|+|--. .|+.+ |.| +-++|+.+.+.|=|| |.=|.-..|+|+|-..-+.-....++-|||-+
T Consensus 93 EqlaPffp--~f~yn---PkD------~RfIGTPvD~iVFdG-Ls~G~i~~IvFvEVKtGkt~~LseREk~Vr~a 155 (175)
T COG4741 93 EQLAPFFP--EFKYN---PKD------ARFIGTPVDFIVFDG-LSEGNIESIVFVEVKTGKTSSLSEREKAVRDA 155 (175)
T ss_pred hhhccccc--CCCcC---Ccc------ceeeCCCceEEEEcC-CCcCceeEEEEEEEecCCcCCccHHHHHHHHH
Confidence 56777542 23332 555 358999999999999 66699999999998766655556666666643
No 6
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=22.01 E-value=46 Score=34.86 Aligned_cols=21 Identities=24% Similarity=-0.065 Sum_probs=19.0
Q ss_pred eCCeecccCCceEEEEEeccc
Q 026094 169 TDGQLNMGTWQELHGCMLLLT 189 (243)
Q Consensus 169 ~dGkL~LGTWQ~IyLvEfr~~ 189 (243)
.+|+|..|||||||+.|-.+.
T Consensus 215 ~qg~LWVGTdqGv~~~e~~G~ 235 (671)
T COG3292 215 VQGRLWVGTDQGVYLQEAEGW 235 (671)
T ss_pred hcCcEEEEeccceEEEchhhc
Confidence 479999999999999999883
No 7
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=19.92 E-value=95 Score=21.88 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.5
Q ss_pred CCeecccCCceEEEEEeccccc
Q 026094 170 DGQLNMGTWQELHGCMLLLTSL 191 (243)
Q Consensus 170 dGkL~LGTWQ~IyLvEfr~~~~ 191 (243)
+|.+.|.+||.|+|..-+...+
T Consensus 38 ~~~irlT~~Q~l~l~~v~~~~~ 59 (69)
T PF03460_consen 38 DGEIRLTTRQNLQLRGVPEENL 59 (69)
T ss_dssp TSEEEEETTSCEEEEEEEGGGH
T ss_pred CCeEEECCCCeEEEeCCCHHHH
Confidence 5789999999999987665543
No 8
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=18.33 E-value=2.1e+02 Score=27.17 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=40.6
Q ss_pred EEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHH-HhhCCC
Q 026094 68 VTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL-NKIVPE 135 (243)
Q Consensus 68 ItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~L-erLVP~ 135 (243)
+-..+...+-..|-+-|++.|.++ +.--+|++.-+-|.++..||.++- +|-||-
T Consensus 123 vy~qPp~~~~p~IKE~vR~~I~~A--------------~kVIAIVMD~FTD~dIf~DLleAa~kR~VpV 177 (284)
T PF07894_consen 123 VYFQPPKDGQPHIKEVVRRMIQQA--------------QKVIAIVMDVFTDVDIFCDLLEAANKRGVPV 177 (284)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHh--------------cceeEEEeeccccHHHHHHHHHHHHhcCCcE
Confidence 333333357778999999999872 233467788888999999999888 888884
No 9
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=16.29 E-value=2.3e+02 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=20.9
Q ss_pred EEEEEEEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEE
Q 026094 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLF 103 (243)
Q Consensus 63 v~~~tItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vf 103 (243)
+..+.|.....+.-.+|||..|++|+.. .....||..-.
T Consensus 163 l~s~~v~~~~~gW~~~dvt~~v~~W~~~--~~~n~gl~l~~ 201 (238)
T PF00688_consen 163 LDSRTVDPSDSGWVSFDVTSAVRRWLRN--PEKNLGLELEV 201 (238)
T ss_dssp EEEEEE---S--EEEEE-HHHHHHHHH-----S-EEEEEEE
T ss_pred eeeeeeccccCCceeEhHHHHHHHHHhC--CCCCccEEEEE
Confidence 4444555554455677999999999996 55678866544
No 10
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=15.01 E-value=2.3e+02 Score=28.13 Aligned_cols=55 Identities=18% Similarity=0.053 Sum_probs=33.6
Q ss_pred EEecCCCCeEEeCcHHHHHHHHhh-ccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHH
Q 026094 68 VTLPPLRRGCHLITPKIVKEIAQD-LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN 130 (243)
Q Consensus 68 ItV~T~~rg~~DIT~eV~~~V~~~-~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~Le 130 (243)
+.|.++..+--.||+++.+++++. ..||.-|.=.|...+ ||. ++.++.+|.+.|-
T Consensus 218 ~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG------VND--~~~~l~~L~~~L~ 273 (417)
T TIGR03820 218 VWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG------VND--CPRIMKKLVHKLV 273 (417)
T ss_pred eEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC------cCC--CHHHHHHHHHHHH
Confidence 344443322235789998888752 256655555555544 555 6888888877764
Done!