Query 026094
Match_columns 243
No_of_seqs 163 out of 1102
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6c_A AQ_2013 protein; NPPSFA 100.0 8.1E-52 2.8E-56 341.4 14.4 124 61-189 1-125 (137)
2 1vmj_A Hypothetical protein TM 100.0 5.1E-50 1.7E-54 336.0 14.9 126 60-188 12-138 (151)
3 1vph_A Hypothetical protein SS 100.0 5.6E-50 1.9E-54 335.2 13.6 124 60-189 12-136 (149)
4 2p6h_A Hypothetical protein; s 100.0 8.4E-50 2.9E-54 328.3 13.3 120 63-188 1-121 (134)
5 1ve0_A Hypothetical protein (S 100.0 1.7E-49 5.7E-54 326.5 14.3 120 61-188 1-121 (134)
6 1vmf_A Hypothetical protein; s 100.0 1E-47 3.4E-52 320.4 13.9 119 64-188 12-131 (145)
7 1vmh_A Uncharacterized conserv 100.0 8.6E-48 2.9E-52 320.5 12.9 116 66-188 17-133 (144)
8 2cu5_A Conserved hypothetical 100.0 4.2E-46 1.4E-50 305.1 11.9 112 67-188 6-118 (129)
9 4f02_C Eukaryotic translation 15.5 43 0.0015 20.4 0.5 20 67-86 2-21 (27)
10 2qzg_A Conserved uncharacteriz 9.9 1.8E+02 0.0063 22.4 2.7 32 114-158 49-81 (94)
No 1
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=8.1e-52 Score=341.38 Aligned_cols=124 Identities=27% Similarity=0.442 Sum_probs=120.0
Q ss_pred CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (243)
Q Consensus 61 M~v~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~ 139 (243)
|++++++|+|+|++ ++++|||++|+++|++ +|+++|+|+||++||||||+|||| ||+|++||+++|+||||++.
T Consensus 1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 75 (137)
T 2p6c_A 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP-- 75 (137)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence 89999999999986 7999999999999997 999999999999999999999999 99999999999999999984
Q ss_pred CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT 189 (243)
Q Consensus 140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~ 189 (243)
+|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||||+.
T Consensus 76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~ 125 (137)
T 2p6c_A 76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQ 125 (137)
T ss_dssp TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCS
T ss_pred CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCC
Confidence 69999999999999999999999999999999999999999999999953
No 2
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=100.00 E-value=5.1e-50 Score=335.99 Aligned_cols=126 Identities=28% Similarity=0.436 Sum_probs=119.3
Q ss_pred CCeEEEEEEEecCC-CCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCC
Q 026094 60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (243)
Q Consensus 60 ~M~v~~~tItV~T~-~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~ 138 (243)
-|+-|+++|+|+|. +++++|||++|+++|++ +|+++|+|+||++||||||+|||| ||+|++||+++|+||||++..
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~ 88 (151)
T 1vmj_A 12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY 88 (151)
T ss_dssp -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence 48999999999996 47999999999999997 999999999999999999999999 999999999999999998741
Q ss_pred CCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 139 ~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg 138 (151)
T 1vmj_A 89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDG 138 (151)
T ss_dssp GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence 16999999999999999999999999999999999999999999999985
No 3
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=100.00 E-value=5.6e-50 Score=335.20 Aligned_cols=124 Identities=25% Similarity=0.424 Sum_probs=119.6
Q ss_pred CCeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCC
Q 026094 60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (243)
Q Consensus 60 ~M~v~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~ 138 (243)
-|++|+++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|+||||+++
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~- 87 (149)
T 1vph_A 12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR- 87 (149)
T ss_dssp CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence 499999999999987 7999999999999997 999999999999999999999999 99999999999999999984
Q ss_pred CCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT 189 (243)
Q Consensus 139 ~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~ 189 (243)
+|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+.
T Consensus 88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~ 136 (149)
T 1vph_A 88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGP 136 (149)
T ss_dssp -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCC
T ss_pred -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCC
Confidence 6999988 999999999999999999999999999999999999999964
No 4
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=100.00 E-value=8.4e-50 Score=328.34 Aligned_cols=120 Identities=25% Similarity=0.431 Sum_probs=115.4
Q ss_pred EEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCc
Q 026094 63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141 (243)
Q Consensus 63 v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y 141 (243)
++|++|+|+|+++ +++|||++|+++|++ +|+++|+|+||++||||||+|||| ||+|++||+++|+||+|++. +|
T Consensus 1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y 75 (134)
T 2p6h_A 1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW 75 (134)
T ss_dssp CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence 3789999999874 999999999999997 999999999999999999999999 99999999999999999974 69
Q ss_pred eeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 142 ~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg 121 (134)
T 2p6h_A 76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDG 121 (134)
T ss_dssp GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCC
Confidence 99999 99999999999999999999999999999999999999985
No 5
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-49 Score=326.55 Aligned_cols=120 Identities=27% Similarity=0.452 Sum_probs=115.7
Q ss_pred CeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (243)
Q Consensus 61 M~v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~ 139 (243)
|++++++|+|+|+++ +++|||++|+++|+ |+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.
T Consensus 1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 73 (134)
T 1ve0_A 1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG-- 73 (134)
T ss_dssp CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence 889999999999874 99999999999995 89999999999999999999999 99999999999999999974
Q ss_pred CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
+|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg 121 (134)
T 1ve0_A 74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDG 121 (134)
T ss_dssp CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCC
Confidence 6999999 99999999999999999999999999999999999999985
No 6
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=100.00 E-value=1e-47 Score=320.37 Aligned_cols=119 Identities=34% Similarity=0.452 Sum_probs=112.1
Q ss_pred EEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCce
Q 026094 64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142 (243)
Q Consensus 64 ~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~ 142 (243)
+.++|+|.|.+ ++++|||++|+++|++ +||++|+|+||++||||||+||||+||+|++||+++|+||||++. .+|+
T Consensus 12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~ 88 (145)
T 1vmf_A 12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR 88 (145)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence 46899999986 6999999999999997 999999999999999999999999999999999999999999874 2699
Q ss_pred eCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 143 H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
| .|| ||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg 131 (145)
T 1vmf_A 89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDG 131 (145)
T ss_dssp C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSC
T ss_pred c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcC
Confidence 9 455 999999999999999999999999999999999999995
No 7
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Probab=100.00 E-value=8.6e-48 Score=320.47 Aligned_cols=116 Identities=34% Similarity=0.445 Sum_probs=111.3
Q ss_pred EEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeC
Q 026094 66 KTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144 (243)
Q Consensus 66 ~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~ 144 (243)
++|+|+|.+ ++++|||++|+++|++ +|+++|+|+||++||||||+||||+||+|++||+++|+||||++. +|+|+
T Consensus 17 ~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H~ 92 (144)
T 1vmh_A 17 IEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKHV 92 (144)
T ss_dssp CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCCT
T ss_pred EEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--CcccC
Confidence 579999985 7999999999999997 999999999999999999999999999999999999999999974 69997
Q ss_pred ccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 145 ~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
+|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 93 ---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg 133 (144)
T 1vmh_A 93 ---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDG 133 (144)
T ss_dssp ---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSC
T ss_pred ---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence 78999999999999999999999999999999999999985
No 8
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-46 Score=305.14 Aligned_cols=112 Identities=30% Similarity=0.462 Sum_probs=104.7
Q ss_pred EEEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCC-CCCCceeCc
Q 026094 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEG-RSASWKHTL 145 (243)
Q Consensus 67 tItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~-~~~~Y~H~~ 145 (243)
+|+|++++++++|||++|+++|++ ++|+|+||++||||||+||||+||+|++||+++|+||+|++ . +|+| .
T Consensus 6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~~--~y~H-~ 77 (129)
T 2cu5_A 6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRP--QDRH-L 77 (129)
T ss_dssp EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCCT--TCCC-T
T ss_pred EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCCC--CcCc-C
Confidence 577886668999999999999962 99999999999999999999999999999999999999987 4 5999 4
Q ss_pred cCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094 146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL 188 (243)
Q Consensus 146 eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~ 188 (243)
|| ||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus 78 eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg 118 (129)
T 2cu5_A 78 EG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDG 118 (129)
T ss_dssp TS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred CC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence 55 999999999999999999999999999999999999985
No 9
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=15.50 E-value=43 Score=20.42 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=14.8
Q ss_pred EEEecCCCCeEEeCcHHHHH
Q 026094 67 TVTLPPLRRGCHLITPKIVK 86 (243)
Q Consensus 67 tItV~T~~rg~~DIT~eV~~ 86 (243)
+|.++-...|=-|||+||..
T Consensus 2 ~irirdpnqggkditeeims 21 (27)
T 4f02_C 2 TIRIRDPNQGGKDITEEIMS 21 (27)
T ss_pred cceecCccccchhhHHHHHh
Confidence 56677666678899998764
No 10
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=9.91 E-value=1.8e+02 Score=22.44 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=19.5
Q ss_pred eccCCcchHH-HHHHHHHhhCCCCCCCCceeCccCCCCchhhhhhh
Q 026094 114 NENYDSDVRD-DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSS 158 (243)
Q Consensus 114 NEn~DP~l~~-DL~~~LerLVP~~~~~~Y~H~~eG~DN~~AHLKSs 158 (243)
||..+|+|+. .-...|+.+. .|.|||.|.|..
T Consensus 49 ~e~~~~~vRAAtAIs~LDeIS-------------nDPNmP~htRT~ 81 (94)
T 2qzg_A 49 NEEQELIVRSATAIQYLDDIS-------------EDPNMPIHTRTQ 81 (94)
T ss_dssp CTTSCHHHHHHHHHHHHHHHT-------------TCTTCCHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhh-------------cCCCCChHHHHH
Confidence 3445566644 4455555554 245999999954
Done!