BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026095
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana
GN=At1g68190 PE=2 SV=1
Length = 356
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
M+R CE C + A ++C +D A LC CD +VH AN L RH+R LC CK+
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62
>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8
PE=2 SV=2
Length = 319
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGE 61
RACELC ++ A +CASD+AFLC CD+ VH AN + +H R +C + ++
Sbjct: 19 RACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHER--VCLRTNEISNDV---- 72
Query: 62 RSSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSVSDISGE 117
R ++L + S T S E +K+ ER+R V +I GE
Sbjct: 73 RGGTTLTSVWHSGFRRKARTPR---SRYEKKPQQKIDDERRRE---DPRVPEIGGE 122
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 1 MKRACELCSQEAAL-HCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC 50
M+ C+ C E AL +C SD A LC +CD VH AN L RH R LC +C
Sbjct: 1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKC 51
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana
GN=COL2 PE=1 SV=1
Length = 347
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 RACELCSQEA-ALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFI 58
RAC+ C A ++C +D A+LC CD RVH AN + +RH R +C C+S F+
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFL 70
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana
GN=COL4 PE=2 SV=2
Length = 362
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
+ C+ C S AAL+C D AFLC CD +VH AN L +RH R +C C+
Sbjct: 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCE 53
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 CELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
CE+C Q A + C +D A LC CD +H AN L RH R
Sbjct: 49 CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHER 88
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana
GN=COL14 PE=2 SV=2
Length = 402
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 ACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC 50
ACE C + A L C +D A LC CD VH AN L +HVR +C C
Sbjct: 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana
GN=COL3 PE=1 SV=1
Length = 294
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 3 RACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
R C+ C AA L C +D AFLC DCD ++H AN L +RH R LC C+
Sbjct: 6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 CELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
CE+C Q A + C +D A LC CD +H AN L RH R
Sbjct: 51 CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana
GN=COL13 PE=2 SV=1
Length = 332
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 3 RACELCSQEAAL-HCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC-KSLTGKFISG 60
R C+ C AL +C +D A LC CD +VH AN L A+H R LC C +S + F
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70
Query: 61 ERS 63
ERS
Sbjct: 71 ERS 73
>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana
GN=COL12 PE=2 SV=2
Length = 364
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
M+ C+ C + +A ++C SD A LC +CD VH AN L RH+R +C +C S
Sbjct: 1 MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFS 53
>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis
thaliana GN=At1g75540 PE=1 SV=1
Length = 331
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 1 MKRACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFIS 59
MK C++C +EA++ C +DEA LC CD +VH AN L ++H+R +L + S
Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLL---------YPS 51
Query: 60 GERSSSSLVPIC 71
+SS L IC
Sbjct: 52 SSNTSSPLCDIC 63
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 CELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
C++C ++A L C D A LC DCD +H AN +H R
Sbjct: 60 CDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDR 99
>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana
GN=COL15 PE=2 SV=1
Length = 433
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 5 CELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC 50
C+ C + A L C +D A LC CD +VH AN L +HVR +C C
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNC 55
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 RACELCSQEA-ALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFI 58
R C+ C A ++C +D A+LC CD +VH AN + +RH R +C C+ F+
Sbjct: 18 RPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFL 74
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 3 RACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
R CE C + AA C +D+A LC CD VH AN L RH R
Sbjct: 61 RVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana
GN=COL1 PE=1 SV=1
Length = 355
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 RACELCSQEA-ALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFI 58
+AC+ C A ++C +D A+LC CD +VH AN L +RH R +C C+ F
Sbjct: 10 QACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFF 66
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 3 RACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
R C+ C + AA C +D A LC CD +H AN L RH R
Sbjct: 53 RVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94
>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana
GN=COL10 PE=1 SV=1
Length = 373
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 1 MKRACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFIS 59
M C+ C Q + ++C SD A LC CD VH AN L RH R +C +C +
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASV-- 58
Query: 60 GERSSSSLVPICPSC 74
R S V +C +C
Sbjct: 59 --RCSDERVSLCQNC 71
>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis
thaliana GN=At1g78600 PE=1 SV=2
Length = 299
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 1 MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL---------CSQC 50
MK C +C + EA + C +DEA LC+ CD+++H AN L +H R L C C
Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60
Query: 51 KSLTGKFI 58
+ +G F
Sbjct: 61 QEASGFFF 68
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 5 CELCSQEAA--LHCASDEAFLCFDCDDRVHKANFLVARHVR 43
C++C QEA+ C D A LC CD +H N V+ H R
Sbjct: 57 CDIC-QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQR 96
>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana
GN=COL9 PE=2 SV=1
Length = 372
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 MKRACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
M C+ C Q + ++C SD A LC CD VH AN L RH R +C +C +
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana
GN=COL6 PE=2 SV=2
Length = 406
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCS 48
RAC+ C + A +CA+D+AFLC CD VH AN L RH R L S
Sbjct: 15 RACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLKS 61
>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1
PE=2 SV=1
Length = 395
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
R C+ C + + ++C +D A+LC CD RVH AN + +RH R +C C+
Sbjct: 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACE 82
>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana
GN=COL16 PE=2 SV=2
Length = 417
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL 46
RAC+ C + A +CA+D+AFLC CD VH AN L RH R L
Sbjct: 15 RACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRL 59
>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana
GN=COL7 PE=2 SV=1
Length = 392
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 3 RACELCSQE--AALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLT 54
R C+ C + A+ +C +D+AFLC CD +H AN L RH R L S + T
Sbjct: 20 RGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERVRLQSSSPTET 73
>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20
PE=1 SV=1
Length = 242
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 1 MKRACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCS 48
MK C +C +EA++ C +DEA LC CD VH AN L +H+R +L S
Sbjct: 1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTS 49
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 28/108 (25%)
Query: 5 CELCSQE-AALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERS 63
C++C + A L C D A LC +CD +H+AN +H R LTG IS +
Sbjct: 58 CDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFL-------LTGVKIS---A 107
Query: 64 SSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSV 111
S S P ++ S++A GR + R ++ SS V
Sbjct: 108 SPSAYP-----------------RASNSNSAAAFGRAKTRPKSVSSEV 138
>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1
SV=2
Length = 238
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 1 MKRACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKF 57
MK C++C + A L C +DEA LC CD VH AN L ++H R L SL+ KF
Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL----DSLSTKF 54
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 CELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVR 43
C++C ++AA + C D A LC DCD+ H N A H R
Sbjct: 57 CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQR 96
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5
PE=2 SV=2
Length = 355
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 5 CELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVR 43
CE+C Q AA+ C +D A LC CD +H AN L +RH R
Sbjct: 61 CEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHER 100
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
R+C+ C S AA+ C D AFLC CD R+H RH R +C C+
Sbjct: 20 RSCDACKSVTAAVFCRVDSAFLCIACDTRIHS----FTRHERVWVCEVCE 65
>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1
Length = 248
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 1 MKRACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKF 57
MK C++C + A + C +DEA LC CD +H AN L ++H R L SL+ KF
Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL----NSLSTKF 54
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 5 CELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVR 43
C++C ++AA + C D A LC DCD+ +H AN A H R
Sbjct: 57 CDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
>sp|B5LMN4|ACCD_CICAR Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Cicer arietinum GN=accD PE=3 SV=1
Length = 460
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 9 SQEAALHCASDEAFLCFDCDDRVHKANFL---VARHVRQTLCSQCKSLTGKFISGERSSS 65
S ++ A + L D D + + N + + ++R +C L F + S
Sbjct: 75 SYSYSIFFAIENKILEIDYDSQFNWKNIINSCIENYLRSQICIDSDILDNSFKYNDNDSD 134
Query: 66 SLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRE 100
IC +S+ STS+D I+ T S E +
Sbjct: 135 VYSYICGKVTNSSQSTSTDVITITNDSEKESFNDD 169
>sp|P55486|Y4IC_RHISN Uncharacterized protein y4iC OS=Rhizobium sp. (strain NGR234)
GN=NGR_a03300 PE=4 SV=1
Length = 230
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 12 AALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSL 53
A +HCAS AF C DC+D V++ + LV +C + K L
Sbjct: 121 APIHCASRSAFACDDCNDPVYRQSVLV-------ICHRGKKL 155
>sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
laevis GN=cdkal1 PE=2 SV=1
Length = 556
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 72 PSCCSSTTSTSSDCISSTESSAAEKMGRERKRV-RACSSSVSDISGEKAAAVADSKAEGI 130
P+ C S D +S+T+ ++ + V RA + ++I E+ A DS G
Sbjct: 2 PAVCESLLDDIEDMVSATDPKPHDRQSARKNIVPRARKRNKNNIQEEEPPA--DSTIPGT 59
Query: 131 FAIWCRRLGLNGNNSN 146
IW R G + NNS+
Sbjct: 60 QKIWIRTWGCSHNNSD 75
>sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
tropicalis GN=cdkal1 PE=2 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 72 PSCCSSTTSTSSDCISSTESSAAEKMG-RERKRVRACSSSVSDISGEKAAAVADSKAEGI 130
P+ C S D +S+T+ ++ R+ RA + + I E+ A DS G
Sbjct: 2 PAACESLLDDIEDIVSATDPKPHDRQNARQNIVPRARKRNKNKIQEEEPPA--DSTIPGT 59
Query: 131 FAIWCRRLGLNGNNSN 146
IW R G + NNS+
Sbjct: 60 QKIWIRTWGCSHNNSD 75
>sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=rapA PE=3 SV=1
Length = 970
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C +T + E++ RER+ +R +S I ++AAA S+ EG + C +G G
Sbjct: 510 CAKATTALQLEQVLREREGIRGAVFHEGLSLIERDRAAAYFASEEEGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|B1JKV7|RAPA_YERPY RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rapA
PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|Q66EN4|RAPA_YERPS RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rapA
PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|A4TQB3|RAPA_YERPP RNA polymerase-associated protein RapA OS=Yersinia pestis (strain
Pestoides F) GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|Q1CMQ6|RAPA_YERPN RNA polymerase-associated protein RapA OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|A9R154|RAPA_YERPG RNA polymerase-associated protein RapA OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|Q8ZII0|RAPA_YERPE RNA polymerase-associated protein RapA OS=Yersinia pestis GN=rapA
PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|B2K4B3|RAPA_YERPB RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rapA
PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|Q1C1Y2|RAPA_YERPA RNA polymerase-associated protein RapA OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|A7FM96|RAPA_YERP3 RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|A1JJG0|RAPA_YERE8 RNA polymerase-associated protein RapA OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=rapA PE=3
SV=1
Length = 968
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
>sp|B4F2H6|RAPA_PROMH RNA polymerase-associated protein RapA OS=Proteus mirabilis (strain
HI4320) GN=rapA PE=3 SV=1
Length = 967
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S + ++AAA S+ EG + C +G G
Sbjct: 509 CAQAATALQLEQVLREREGIRAAVFHEGMSLLERDRAAAYFASEEEGAQVLLCSEIGSEG 568
Query: 143 NN 144
N
Sbjct: 569 RN 570
>sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia proteamaculans
(strain 568) GN=rapA PE=3 SV=1
Length = 968
Score = 30.8 bits (68), Expect = 9.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 CISSTESSAAEKMGRERKRVRAC--SSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNG 142
C + + E++ RER+ +RA +S I ++AAA S+ +G + C +G G
Sbjct: 510 CAHAATALQLEQVLREREAIRAAVFHEGLSIIERDRAAAYFASEEDGAQVLLCSEIGSEG 569
Query: 143 NN 144
N
Sbjct: 570 RN 571
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,583,397
Number of Sequences: 539616
Number of extensions: 2666784
Number of successful extensions: 9457
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 9082
Number of HSP's gapped (non-prelim): 358
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)