Query 026095
Match_columns 243
No_of_seqs 153 out of 473
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 97.6 1.4E-05 4.9E-10 59.9 1.0 71 3-77 4-88 (101)
2 1fre_A Nuclear factor XNF7; zi 81.0 0.81 2.8E-05 28.9 2.0 31 4-34 5-36 (42)
3 2did_A Tripartite motif protei 77.0 1.4 4.8E-05 29.2 2.3 39 3-47 9-48 (53)
4 2yrg_A Tripartite motif-contai 76.6 1.4 4.7E-05 30.3 2.2 39 3-47 15-54 (59)
5 2ffw_A Midline-1; B-BOX, ring 72.3 1.7 5.7E-05 31.7 1.8 40 3-42 31-74 (78)
6 2egm_A Tripartite motif-contai 69.7 1.4 4.8E-05 30.1 0.9 32 3-34 19-51 (57)
7 2d8u_A Ubiquitin ligase TRIM63 63.7 4.8 0.00016 27.2 2.6 45 3-53 9-55 (64)
8 2yvr_A Transcription intermedi 59.3 4.6 0.00016 26.2 1.8 38 3-46 7-45 (50)
9 2csv_A Tripartite motif protei 57.4 4.7 0.00016 28.2 1.8 41 3-49 19-59 (72)
10 3ddt_A E3 ubiquitin-protein li 56.3 5.2 0.00018 25.9 1.7 31 4-34 8-40 (48)
11 2dja_A Midline-2; tripartite m 54.9 8.5 0.00029 27.4 2.8 45 3-53 19-65 (84)
12 2jun_A Midline-1; B-BOX, TRIM, 54.6 6.3 0.00022 28.7 2.1 32 3-34 60-93 (101)
13 1ais_B TFB TFIIB, protein (tra 48.4 98 0.0033 24.8 8.6 83 127-224 12-98 (200)
14 1c9b_A General transcription f 46.3 1E+02 0.0035 24.9 8.5 86 126-224 7-94 (207)
15 4anr_A Soluble lytic transglyc 35.2 34 0.0012 31.5 4.2 44 169-222 78-124 (323)
16 1v6g_A Actin binding LIM prote 35.1 13 0.00043 26.0 1.0 60 13-77 3-72 (81)
17 4hc9_A Trans-acting T-cell-spe 33.5 17 0.00059 28.5 1.7 39 1-39 4-46 (115)
18 1ais_B TFB TFIIB, protein (tra 32.3 1.9E+02 0.0066 23.0 8.3 85 127-224 108-194 (200)
19 1f62_A Transcription factor WS 31.2 37 0.0013 22.0 2.8 27 4-34 2-28 (51)
20 1z60_A TFIIH basal transcripti 25.2 18 0.00061 25.6 0.4 31 4-34 17-51 (59)
21 2kn0_A FN14; tweak, TNF recept 24.0 40 0.0014 24.5 2.0 22 71-92 21-43 (66)
22 2lri_C Autoimmune regulator; Z 23.5 52 0.0018 23.2 2.6 24 3-33 13-36 (66)
23 1qus_A Lytic murein transglyco 23.4 73 0.0025 29.1 4.2 42 170-221 84-128 (322)
24 1w98_B Cyclin E, G1/S-specific 22.5 3E+02 0.01 23.6 7.8 82 131-224 57-143 (283)
25 2b9r_A Human cyclin B1; cell c 21.2 3.7E+02 0.013 22.7 8.1 82 131-224 45-130 (269)
26 4bbr_M Transcription initiatio 20.6 3E+02 0.01 24.7 7.7 87 126-225 128-216 (345)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.58 E-value=1.4e-05 Score=59.92 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=57.4
Q ss_pred ccccccC---C-CceEEecCCccccCcccccccccCccccCCcccc-ccc------cccccCCc---ceeeccCCCCCCc
Q 026095 3 RACELCS---Q-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQ-TLC------SQCKSLTG---KFISGERSSSSLV 68 (243)
Q Consensus 3 ~~Cd~C~---~-pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~Rv-pLC------~~C~~~pa---~~~c~~~~~~d~~ 68 (243)
..|++|. . +|+.+|..+...||..|...+|..++.+.+|..+ |+- ..|+.|+. .+||.. |..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~----~~~ 79 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVT----DDQ 79 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETT----TTE
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCC----CCC
Confidence 5799997 2 7999999999999999999999988888899876 332 36888863 445654 999
Q ss_pred ccCCCCCCC
Q 026095 69 PICPSCCSS 77 (243)
Q Consensus 69 ~LC~~Cd~~ 77 (243)
++|..|...
T Consensus 80 ~iC~~C~~~ 88 (101)
T 2jun_A 80 LICALCKLV 88 (101)
T ss_dssp EECHHHHHH
T ss_pred ccchhcCCC
Confidence 999999863
No 2
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=80.97 E-value=0.81 Score=28.86 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=24.1
Q ss_pred cccccCCCceEEecCCccccCccccc-ccccC
Q 026095 4 ACELCSQEAALHCASDEAFLCFDCDD-RVHKA 34 (243)
Q Consensus 4 ~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~A 34 (243)
.|+.-+.+-.+||..|...+|..|.. .-|..
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 45555557789999999999999986 55543
No 3
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=76.99 E-value=1.4 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=28.9
Q ss_pred ccccccCCCceEEecCCccccCccccc-ccccCccccCCccccccc
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLC 47 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC 47 (243)
..|+.-+.+-.+||..|...+|..|.. .-|. .|.-+|+-
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 456666557789999999999999986 5564 36666654
No 4
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.58 E-value=1.4 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=28.7
Q ss_pred ccccccCCCceEEecCCccccCccccc-ccccCccccCCccccccc
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLC 47 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC 47 (243)
..|...+.+-.+||..|...+|..|.. .-|. .|.-+++-
T Consensus 15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS 54 (59)
T ss_dssp SBCTTTCCBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred ccChhhCceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence 356666667789999999999999986 5554 36655553
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=72.31 E-value=1.7 Score=31.66 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=33.6
Q ss_pred ccccccCC----CceEEecCCccccCcccccccccCccccCCcc
Q 026095 3 RACELCSQ----EAALHCASDEAFLCFDCDDRVHKANFLVARHV 42 (243)
Q Consensus 3 ~~Cd~C~~----pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~ 42 (243)
..||+|.. +|+-+|....+.+|..|=...|...+.+.+|.
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence 57999972 58999999999999999877788777777885
No 6
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.65 E-value=1.4 Score=30.08 Aligned_cols=32 Identities=31% Similarity=0.673 Sum_probs=24.8
Q ss_pred ccccccCCCceEEecCCccccCccccc-ccccC
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDD-RVHKA 34 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~A 34 (243)
..|+..+.+-.+||..|...+|..|.. .-|..
T Consensus 19 ~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~ 51 (57)
T 2egm_A 19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQ 51 (57)
T ss_dssp SBCTTTCCBCCEEETTTTEEECHHHHHSHHHHS
T ss_pred CcChhhCceeeEEcCCCCcEEecccCCCCCCCC
Confidence 356666557789999999999999986 55543
No 7
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=63.66 E-value=4.8 Score=27.25 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=32.8
Q ss_pred cccccc-CCCceEEecCCccccCccccc-ccccCccccCCccccccccccccC
Q 026095 3 RACELC-SQEAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLCSQCKSL 53 (243)
Q Consensus 3 ~~Cd~C-~~pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC~~C~~~ 53 (243)
..|+.. +.+-.+||..|...+|..|.. .-|. .|.-+|+-+..+..
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~~ 55 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQGQ 55 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSSC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHHH
Confidence 456666 457789999999999999975 4665 37777776554443
No 8
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=59.27 E-value=4.6 Score=26.20 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=28.3
Q ss_pred cccccc-CCCceEEecCCccccCcccccccccCccccCCcccccc
Q 026095 3 RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL 46 (243)
Q Consensus 3 ~~Cd~C-~~pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpL 46 (243)
..|+.- +.+-.+||..|...+|..|-..-|. .|.-+++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l 45 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFL 45 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEET
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecH
Confidence 456666 3467899999999999999876564 3665555
No 9
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=57.36 E-value=4.7 Score=28.18 Aligned_cols=41 Identities=27% Similarity=0.593 Sum_probs=30.0
Q ss_pred ccccccCCCceEEecCCccccCcccccccccCccccCCccccccccc
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQ 49 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpLC~~ 49 (243)
..|+.-+.+-.+||..|...+|..|-..-|. .|.-+++-+.
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea 59 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEA 59 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHH
T ss_pred CcCcccCCceEEEeCCCCeEEccccCCCCCC------CCCEecHHHH
Confidence 3566555577899999999999999875564 3666666443
No 10
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=56.32 E-value=5.2 Score=25.85 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=23.0
Q ss_pred cccccC-CCceEEecCCccccCcccc-cccccC
Q 026095 4 ACELCS-QEAALHCASDEAFLCFDCD-DRVHKA 34 (243)
Q Consensus 4 ~Cd~C~-~pA~vyC~aD~A~LC~~CD-a~vH~A 34 (243)
.|..-+ .+-.+||..|...+|..|. ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 455544 3567999999999999996 445654
No 11
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=54.94 E-value=8.5 Score=27.36 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccccccC-CCceEEecCCccccCccccc-ccccCccccCCccccccccccccC
Q 026095 3 RACELCS-QEAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLCSQCKSL 53 (243)
Q Consensus 3 ~~Cd~C~-~pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC~~C~~~ 53 (243)
..|+.-+ .+-.+||..|...+|..|.. .-|. .|.-+++-+..+..
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~~ 65 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEKL 65 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHHH
Confidence 3566664 47789999999999999987 5564 37777775544433
No 12
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=54.61 E-value=6.3 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=25.8
Q ss_pred ccccccC-CCceEEecCCccccCccccc-ccccC
Q 026095 3 RACELCS-QEAALHCASDEAFLCFDCDD-RVHKA 34 (243)
Q Consensus 3 ~~Cd~C~-~pA~vyC~aD~A~LC~~CDa-~vH~A 34 (243)
..|+..+ .+-.+||..|...+|..|.. .-|..
T Consensus 60 ~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~ 93 (101)
T 2jun_A 60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRD 93 (101)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSS
T ss_pred CcCcCcCCCcceEECCCCCCccchhcCCCCCcCC
Confidence 3577775 47889999999999999986 66753
No 13
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=48.40 E-value=98 Score=24.82 Aligned_cols=83 Identities=23% Similarity=0.125 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhCCCCCCCCCchhhHHHHHHH----HHhhhhhhccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhH
Q 026095 127 AEGIFAIWCRRLGLNGNNSNCNSVVVVSLASR----ALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLE 202 (243)
Q Consensus 127 ~E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~----a~~~~~~~~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle 202 (243)
+-..+..-+.+|||..+ +...|.. ++...+- ..-++....||+++..-+..+. +-.++-+-
T Consensus 12 a~~~I~~~~~~L~L~~~--------v~~~A~~l~~~~~~~~~~--~gr~~~~vaaAclylAcr~~~~-----p~~l~di~ 76 (200)
T 1ais_B 12 ALSELDRITAQLKLPRH--------VEEEAARLYREAVRKGLI--RGRSIESVMAACVYAACRLLKV-----PRTLDEIA 76 (200)
T ss_dssp HHHHHHHHHHHHTCCHH--------HHHHHHHHHHHHHTTTTT--TTCCHHHHHHHHHHHHHHHHTC-----CCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhCCCc--CCCCHHHHHHHHHHHHHHHcCC-----CCCHHHHH
Confidence 34556788899999854 5555554 5554432 2346788899999999998762 35677778
Q ss_pred HhhCCchhHHHHHHHHHHHHhh
Q 026095 203 AISGVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 203 ~~sgvpa~lilave~~~~r~~~ 224 (243)
.++||+-+-|.-++..|-+.+.
T Consensus 77 ~~~~v~~~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 77 DIARVDKKEIGRSYRFIARNLN 98 (200)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999999988876
No 14
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=46.27 E-value=1e+02 Score=24.86 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhhh--ccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHH
Q 026095 126 KAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLER--TTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEA 203 (243)
Q Consensus 126 ~~E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~~--~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~ 203 (243)
.+...+..-+.+|||... +...|..-+-+.+.+ +..-.+....||+++..-|..+ ++..++-+-.
T Consensus 7 ~a~~~I~~~~~~L~L~~~--------v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee-----~p~~l~di~~ 73 (207)
T 1c9b_A 7 NAFKEITTMADRINLPRN--------IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEG-----VPRTFKEICA 73 (207)
T ss_dssp HHHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTT-----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcC-----CCCCHHHHHH
Confidence 456677888999999754 566666544444322 3345678999999999999876 2356777888
Q ss_pred hhCCchhHHHHHHHHHHHHhh
Q 026095 204 ISGVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 204 ~sgvpa~lilave~~~~r~~~ 224 (243)
+++|.-+-|.-.|..|-+.+.
T Consensus 74 ~~~~~~~~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 74 VSRISKKEIGRCFKLILKALE 94 (207)
T ss_dssp TSSSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHC
Confidence 899999999988888888765
No 15
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif, peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Probab=35.20 E-value=34 Score=31.48 Aligned_cols=44 Identities=34% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhhCCchhHHHH---HHHHHHHH
Q 026095 169 ALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVA---VEGKIARV 222 (243)
Q Consensus 169 ~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~sgvpa~lila---ve~~~~r~ 222 (243)
.-|-||.-.-.||-.-+ +.|.|.|+-.|||..+|+| ||+..++.
T Consensus 78 v~~~ri~~Gr~~~~~~~----------~~l~~~e~~yGVp~~ii~AI~gvES~~G~~ 124 (323)
T 4anr_A 78 ISDARISRGVDFWNKHA----------EDLARAEKEYGVPAEIIVSIIGVETFFGRN 124 (323)
T ss_dssp SCHHHHHHHHHHHHHTH----------HHHHHHHHHHCCCHHHHHHHHHHHHTTTTC
T ss_pred cCHHHHHHHHHHHHHHH----------HHHHHHHHHhCCCHHHHHHHHHHHcccccc
Confidence 35678888888887655 8999999999999999986 67776654
No 16
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.07 E-value=13 Score=25.96 Aligned_cols=60 Identities=17% Similarity=0.345 Sum_probs=33.3
Q ss_pred eEEecCCc----cccCcccccccccCcccc----CCccccccccccccCCc--ceeeccCCCCCCcccCCCCCCC
Q 026095 13 ALHCASDE----AFLCFDCDDRVHKANFLV----ARHVRQTLCSQCKSLTG--KFISGERSSSSLVPICPSCCSS 77 (243)
Q Consensus 13 ~vyC~aD~----A~LC~~CDa~vH~AN~La----~rH~RvpLC~~C~~~pa--~~~c~~~~~~d~~~LC~~Cd~~ 77 (243)
.+||..|- +..|..|+..|.. ..+. ..|..-..|..|+..-. .++... +..++|..|...
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~----~~~~~C~~C~~~ 72 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFN----GKECMCQKCSLP 72 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEE----TTEEEEHHHHSC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeC----CCCEEChhhhcc
Confidence 46888873 4589999998873 2221 13555555677765422 222111 233467777654
No 17
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=33.48 E-value=17 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCccccccCC--CceEEecCCccccCcccc--cccccCccccC
Q 026095 1 MKRACELCSQ--EAALHCASDEAFLCFDCD--DRVHKANFLVA 39 (243)
Q Consensus 1 M~~~Cd~C~~--pA~vyC~aD~A~LC~~CD--a~vH~AN~La~ 39 (243)
+.+.|..|+. ...+.=..+.-.||..|. .+.|+.|....
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~ 46 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI 46 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCS
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccc
Confidence 3578999995 333432333458999999 56677776544
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=32.27 E-value=1.9e+02 Score=23.03 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhh--hccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHh
Q 026095 127 AEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLE--RTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAI 204 (243)
Q Consensus 127 ~E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~--~~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~ 204 (243)
.+..+...+..|||+.. +...|.+-+..... -...-++-...||++++..+..|.+ -.++.+.++
T Consensus 108 p~~~i~r~~~~L~l~~~--------v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~-----~t~~ei~~~ 174 (200)
T 1ais_B 108 PTDYVNKFADELGLSEK--------VRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEK-----RTQREVAEV 174 (200)
T ss_dssp GGGGHHHHHHHHTCCHH--------HHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCC-----CCHHHHHHH
Confidence 35677788888888643 55666654443331 1123445567788999999988744 356788999
Q ss_pred hCCchhHHHHHHHHHHHHhh
Q 026095 205 SGVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 205 sgvpa~lilave~~~~r~~~ 224 (243)
+||.-.-|--.-..|.+.+.
T Consensus 175 ~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 175 ARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HTCCHHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHcC
Confidence 99988777666566655544
No 19
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.24 E-value=37 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=18.1
Q ss_pred cccccCCCceEEecCCccccCcccccccccC
Q 026095 4 ACELCSQEAALHCASDEAFLCFDCDDRVHKA 34 (243)
Q Consensus 4 ~Cd~C~~pA~vyC~aD~A~LC~~CDa~vH~A 34 (243)
.|.+|+... ..+.-.+|..||...|..
T Consensus 2 ~C~vC~~~~----~~~~ll~Cd~C~~~~H~~ 28 (51)
T 1f62_A 2 RCKVCRKKG----EDDKLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHH
T ss_pred CCCCCCCCC----CCCCEEECCCCChhhCcc
Confidence 478888532 234567788899887753
No 20
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.25 E-value=18 Score=25.55 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=24.7
Q ss_pred cccccCC--C-c-eEEecCCccccCcccccccccC
Q 026095 4 ACELCSQ--E-A-ALHCASDEAFLCFDCDDRVHKA 34 (243)
Q Consensus 4 ~Cd~C~~--p-A-~vyC~aD~A~LC~~CDa~vH~A 34 (243)
.|-.|+. + . .+-|......+|.+||.-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 4888884 2 2 3559999999999999999964
No 21
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=23.97 E-value=40 Score=24.48 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCC-CCCCChhhhh
Q 026095 71 CPSCCSSTTSTS-SDCISSTESS 92 (243)
Q Consensus 71 C~~Cd~~~~~~~-sgCpS~~E~a 92 (243)
|..|+..+.+.| -||||+++-+
T Consensus 21 Cs~C~~~p~SdfC~~cps~t~p~ 43 (66)
T 2kn0_A 21 CSVCKNSEKSDFCQNCPSKTEQP 43 (66)
T ss_dssp STTCSSCCCCTTTTTCCCCSCSC
T ss_pred cCcCCCCCCcccccCCCCCCCCC
Confidence 566666655555 7999998763
No 22
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.45 E-value=52 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.674 Sum_probs=16.7
Q ss_pred ccccccCCCceEEecCCccccCccccccccc
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDDRVHK 33 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa~vH~ 33 (243)
..|.+|+.. +...+|..||...|.
T Consensus 13 ~~C~vC~~~-------~~ll~Cd~C~~~~H~ 36 (66)
T 2lri_C 13 ARCGVCGDG-------TDVLRCTHCAAAFHW 36 (66)
T ss_dssp CCCTTTSCC-------TTCEECSSSCCEECH
T ss_pred CCcCCCCCC-------CeEEECCCCCCceec
Confidence 358888752 346677788888886
No 23
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=23.42 E-value=73 Score=29.12 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhhCCchhHHHHH---HHHHHH
Q 026095 170 LPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAV---EGKIAR 221 (243)
Q Consensus 170 ~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~sgvpa~lilav---e~~~~r 221 (243)
=|-||.-.-.||-.-+ +.|.|.|+-.|||..+|+|+ |+..++
T Consensus 84 ~~~ri~~G~~~~~~~~----------~~l~~~e~~yGVp~~~l~AI~gvES~~G~ 128 (322)
T 1qus_A 84 TPDNVQNGVVFWNQYE----------DALNRAWQVYGVPPEIIVGIIGVETRWGR 128 (322)
T ss_dssp SHHHHHHHHHHHHHTH----------HHHHHHHHHHCCCHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHH----------HHHHHHHHHhCCCHHHHHHHHHHHhhccc
Confidence 3667777777776544 88999999999999999875 776654
No 24
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=22.47 E-value=3e+02 Score=23.62 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhhh---ccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhh--
Q 026095 131 FAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLER---TTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAIS-- 205 (243)
Q Consensus 131 l~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~~---~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~s-- 205 (243)
+..++.+++|... ....|..-+-+.+.+ ..+-.+....+++||++.|+... ..+.++-|..++
T Consensus 57 l~~v~~~~~l~~~--------tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~----~~p~l~~~~~i~~~ 124 (283)
T 1w98_B 57 LMEVCEVYKLHRE--------TFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI----YPPKLHQFAYVTDG 124 (283)
T ss_dssp HHHHHHHTTCBHH--------HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS----SCCCHHHHHHTTTT
T ss_pred HHHHHHHhCCCcc--------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHcC
Confidence 4455666777433 567777666666654 23445678889999999999762 245566666666
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 026095 206 GVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 206 gvpa~lilave~~~~r~~~ 224 (243)
....+-|+..|..|-+.|.
T Consensus 125 ~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 125 ACSGDEILTMELMIMKALK 143 (283)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 3778889999988887765
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=21.18 E-value=3.7e+02 Score=22.70 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhhh--ccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhhC--
Q 026095 131 FAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLER--TTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISG-- 206 (243)
Q Consensus 131 l~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~~--~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~sg-- 206 (243)
+..++.+++|... ....|..-+-+.+.+ .++-.+....+++||++-|+... ..+.++-|-.+++
T Consensus 45 l~~v~~~~~l~~~--------tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~----~~p~~~d~~~~~~~~ 112 (269)
T 2b9r_A 45 LVQVQMKFRLLQE--------TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEM----YPPEIGDFAFVTDNT 112 (269)
T ss_dssp HHHHHHHTTCCHH--------HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCS----SCCCHHHHHHHTCSS
T ss_pred HHHHHHHhCCCHH--------HHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccc----cCccHHHHHHHhcCC
Confidence 3445666777633 567777666666543 33445668889999999998762 2456777777774
Q ss_pred CchhHHHHHHHHHHHHhh
Q 026095 207 VPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 207 vpa~lilave~~~~r~~~ 224 (243)
+..+-|+-.|..|-+.|.
T Consensus 113 ~~~~eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 113 YTKHQIRQMEMKILRALN 130 (269)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 788999999998888765
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.56 E-value=3e+02 Score=24.67 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhhh--ccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHH
Q 026095 126 KAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLER--TTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEA 203 (243)
Q Consensus 126 ~~E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~~--~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~ 203 (243)
.+..-+..-+.+|||... +...|..-+-..+.+ +.--.+...+||+++..-|..+ .+-.|+-+-+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~--------v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-----~prtl~eI~~ 194 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKI--------VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-----VARTFKEIQS 194 (345)
T ss_dssp HHHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-----CBCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-----CCccHHHHHH
Confidence 455567788899999754 667776544443311 1123467888999999999765 3355677778
Q ss_pred hhCCchhHHHHHHHHHHHHhhh
Q 026095 204 ISGVPAKLIVAVEGKIARVMAV 225 (243)
Q Consensus 204 ~sgvpa~lilave~~~~r~~~~ 225 (243)
.++|+.+-|--+...|.+.|..
T Consensus 195 ~~~v~~keigr~~k~l~~~L~l 216 (345)
T 4bbr_M 195 LIHVKTKEFGKTLNIMKNILRG 216 (345)
T ss_dssp HHTCCTTHHHHHHHHHHHCC--
T ss_pred HhCCCHHHHHHHHHHHHHHhCc
Confidence 8999999999888888887763
Done!