Query 026095
Match_columns 243
No_of_seqs 153 out of 473
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 05:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026095.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026095hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dida1 g.43.1.1 (A:8-47) Trip 70.6 1.1 7.9E-05 27.6 2.0 30 4-33 3-33 (40)
2 d1frea_ g.43.1.1 (A:) Nuclear 70.6 1 7.4E-05 27.6 1.9 29 5-33 3-32 (39)
3 d2csva1 g.43.1.1 (A:8-66) Trip 56.7 2.5 0.00018 27.6 1.9 31 3-33 12-42 (59)
4 d2dq5a1 g.43.1.1 (A:168-214) M 50.0 1.5 0.00011 27.5 -0.1 31 49-80 7-37 (47)
5 d2djaa1 g.43.1.1 (A:8-78) Midl 45.0 7.9 0.00057 25.3 3.0 44 3-52 12-57 (71)
6 d1qusa_ d.2.1.6 (A:) 36 kDa so 39.1 13 0.00093 31.9 4.2 43 170-222 84-129 (322)
7 d1aisb2 a.74.1.2 (B:1206-1300) 37.6 53 0.0039 22.0 8.4 84 128-224 4-89 (95)
8 d1f62a_ g.50.1.2 (A:) Williams 33.5 12 0.00084 23.0 2.2 26 4-33 2-27 (51)
9 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 32.6 13 0.00094 23.2 2.4 40 3-48 2-43 (51)
10 d1z60a1 g.49.1.2 (A:328-386) T 32.6 7.6 0.00055 26.1 1.2 32 3-34 16-51 (59)
11 d1vola1 a.74.1.2 (A:113-207) T 28.9 75 0.0055 21.1 8.6 83 127-224 5-91 (95)
12 d2djaa1 g.43.1.1 (A:8-78) Midl 26.7 10 0.00074 24.7 1.1 42 36-81 3-44 (71)
13 d1qxfa_ g.41.8.4 (A:) Ribosoma 20.9 12 0.00084 25.0 0.4 31 1-31 6-36 (58)
No 1
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.59 E-value=1.1 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=23.1
Q ss_pred cccccCCCceEEecCCccccCccccc-cccc
Q 026095 4 ACELCSQEAALHCASDEAFLCFDCDD-RVHK 33 (243)
Q Consensus 4 ~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~ 33 (243)
+|..-+.+=.+||..|...+|..|.. .-|.
T Consensus 3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~ 33 (40)
T d2dida1 3 LCPQHHEALSLFCYEDQEAVCLICAISHTHR 33 (40)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTTT
T ss_pred cchhhCccceEEcccCCcEeeccCcCCCCcC
Confidence 45555556789999999999999964 3564
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=70.57 E-value=1 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=22.1
Q ss_pred ccccCCCceEEecCCccccCccccc-cccc
Q 026095 5 CELCSQEAALHCASDEAFLCFDCDD-RVHK 33 (243)
Q Consensus 5 Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~ 33 (243)
|..-+.+-.+||..|...+|..|-. .-|.
T Consensus 3 C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~ 32 (39)
T d1frea_ 3 CSEHDERLKLYCKDDGTLSCVICRDSLKHA 32 (39)
T ss_dssp CCSSCSSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred CcccCcceeEEcccCCcEeeccCcCCCCcC
Confidence 4444457789999999999999954 3564
No 3
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.70 E-value=2.5 Score=27.56 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=24.9
Q ss_pred ccccccCCCceEEecCCccccCccccccccc
Q 026095 3 RACELCSQEAALHCASDEAFLCFDCDDRVHK 33 (243)
Q Consensus 3 ~~Cd~C~~pA~vyC~aD~A~LC~~CDa~vH~ 33 (243)
..|..-+.+-.+||..|...+|..|-..-|.
T Consensus 12 ~~C~~H~e~l~lyC~~c~~~iC~~C~~~~H~ 42 (59)
T d2csva1 12 RKCPVHGKTMELFCQTDQTCICYLCMFQEHK 42 (59)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHHTTTS
T ss_pred CchhhhCCccceECCCCCceECcccCcccCC
Confidence 4566665577899999999999999766664
No 4
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.03 E-value=1.5 Score=27.51 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=21.7
Q ss_pred ccccCCcceeeccCCCCCCcccCCCCCCCCCC
Q 026095 49 QCKSLTGKFISGERSSSSLVPICPSCCSSTTS 80 (243)
Q Consensus 49 ~C~~~pa~~~c~~~~~~d~~~LC~~Cd~~~~~ 80 (243)
.|+.|+...+..+|.+ +..++|..|...+..
T Consensus 7 ~C~~H~~e~l~~yC~~-C~~~iC~~C~~~~~H 37 (47)
T d2dq5a1 7 MCLEHEDEKVNMYCVT-DDQLICALCKLVGRH 37 (47)
T ss_dssp BCSSCTTSBEEEEETT-TTEEEEHHHHHTSST
T ss_pred cchhhCCCcceEEcCC-CCccCCccCcCcCCc
Confidence 3777876555555555 899999999765444
No 5
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.98 E-value=7.9 Score=25.33 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=31.6
Q ss_pred ccccccC-CCceEEecCCccccCccccc-ccccCccccCCcccccccccccc
Q 026095 3 RACELCS-QEAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLCSQCKS 52 (243)
Q Consensus 3 ~~Cd~C~-~pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC~~C~~ 52 (243)
..|.... .+..+||.+|...+|..|-. ..|. .|.-.++-+..+.
T Consensus 12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~~a~~~ 57 (71)
T d2djaa1 12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 57 (71)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred CcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHHHHHHH
Confidence 3577774 47899999999999999954 3563 3777776544443
No 6
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=39.09 E-value=13 Score=31.93 Aligned_cols=43 Identities=33% Similarity=0.490 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhhCCchhHHHH---HHHHHHHH
Q 026095 170 LPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVA---VEGKIARV 222 (243)
Q Consensus 170 ~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~sgvpa~lila---ve~~~~r~ 222 (243)
-|.||.....||-.-+ ..|.++|+-.|||+.+|+| +|+..++.
T Consensus 84 ~~~ri~~g~~~~~~~~----------~~l~~~e~~yGV~~~ii~aiwgvET~yG~~ 129 (322)
T d1qusa_ 84 TPDNVQNGVVFWNQYE----------DALNRAWQVYGVPPEIIVGIIGVETRWGRV 129 (322)
T ss_dssp SHHHHHHHHHHHHHTH----------HHHHHHHHHHCCCHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHHHH----------HHHHHHHHHhCCCHHHHHHHHhhhhchhhh
Confidence 4789999999998665 8999999999999999886 57665543
No 7
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=37.62 E-value=53 Score=21.97 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHhhhhhh--ccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhHHhh
Q 026095 128 EGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLER--TTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAIS 205 (243)
Q Consensus 128 E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~a~~~~~~~--~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle~~s 205 (243)
++.++.-|.+|||... +...|...+...... +.---+....||++++.-+..|-. -.++.+-+.+
T Consensus 4 ~d~I~R~~~~L~L~~~--------i~~~A~~i~~~~~~~~~~~Gr~p~~vaAA~iY~a~r~~~~~-----~t~~eIa~~~ 70 (95)
T d1aisb2 4 TDYVNKFADELGLSEK--------VRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEK-----RTQREVAEVA 70 (95)
T ss_dssp GGGHHHHHHHHTCCHH--------HHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHcCcCHH--------HHHHHHHHHHHHHHcCCcCCCcHHhHHHHHHHHHHHHcCCC-----cCHHHHHHHH
Confidence 5677888999999754 556666544333211 111235577899999999987633 4578899999
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 026095 206 GVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 206 gvpa~lilave~~~~r~~~ 224 (243)
||.-.-|-.+-..|-+.+.
T Consensus 71 ~vs~~tI~~~yk~l~~~l~ 89 (95)
T d1aisb2 71 RVTEVTVRNRYKELVEKLK 89 (95)
T ss_dssp TCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 9999988888777776654
No 8
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.50 E-value=12 Score=22.98 Aligned_cols=26 Identities=27% Similarity=0.844 Sum_probs=18.3
Q ss_pred cccccCCCceEEecCCccccCccccccccc
Q 026095 4 ACELCSQEAALHCASDEAFLCFDCDDRVHK 33 (243)
Q Consensus 4 ~Cd~C~~pA~vyC~aD~A~LC~~CDa~vH~ 33 (243)
.|.+|+.+. ..+.-.+|..|+...|.
T Consensus 2 ~C~vC~~~~----~~~~~i~Cd~C~~~~H~ 27 (51)
T d1f62a_ 2 RCKVCRKKG----EDDKLILCDECNKAFHL 27 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECH
T ss_pred CCcCcCCCC----CCCCEEEcCCCCCCCCC
Confidence 577887532 24567788999988886
No 9
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.64 E-value=13 Score=23.18 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.7
Q ss_pred ccccccCC-CceEEecCCccccCccccc-ccccCccccCCcccccccc
Q 026095 3 RACELCSQ-EAALHCASDEAFLCFDCDD-RVHKANFLVARHVRQTLCS 48 (243)
Q Consensus 3 ~~Cd~C~~-pA~vyC~aD~A~LC~~CDa-~vH~AN~La~rH~RvpLC~ 48 (243)
+.|..-.. +-.+||..|...+|..|-. ..|. .|.=.+|-+
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~~ 43 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQS 43 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTT
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHHH
Confidence 45666654 7899999999999999954 4563 366555533
No 10
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.61 E-value=7.6 Score=26.13 Aligned_cols=32 Identities=34% Similarity=0.706 Sum_probs=25.3
Q ss_pred ccccccCC---Cce-EEecCCccccCcccccccccC
Q 026095 3 RACELCSQ---EAA-LHCASDEAFLCFDCDDRVHKA 34 (243)
Q Consensus 3 ~~Cd~C~~---pA~-vyC~aD~A~LC~~CDa~vH~A 34 (243)
..|-.|++ ... ..|....-.+|.+||.-+|..
T Consensus 16 ~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CCccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 45888883 344 459999999999999999964
No 11
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.95 E-value=75 Score=21.07 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhCCCCCCCCCchhhHHHHHHH----HHhhhhhhccCCchHHHHHHHHHhhhhhcCCCCcCCchhhhhhH
Q 026095 127 AEGIFAIWCRRLGLNGNNSNCNSVVVVSLASR----ALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLE 202 (243)
Q Consensus 127 ~E~vl~~w~rrlgl~~~~~~~~~~~~~~~A~~----a~~~~~~~~~~~p~rv~laa~~w~~~~~~~~~~~~~~~~l~rle 202 (243)
+-+.++.-|.+|||+.+ +...|.. +....+.+ ---+...+||++++.-+..| ..-.++-+-
T Consensus 5 a~~~I~~~~~~L~L~~~--------i~~~A~~i~~~~~~~~~~~--Gr~~~~i~AA~iY~acr~~~-----~p~t~~eIa 69 (95)
T d1vola1 5 AFKEITTMADRINLPRN--------KVDRTNNLFRQAYEQKSLK--GRANDAIASACLYIACRQEG-----VPRTFKEIC 69 (95)
T ss_dssp HHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHHHTCCCT--TSCHHHHHHHHHHHHHHHTT-----CCCCHHHHH
T ss_pred HHHHHHHHHHHcCcCHH--------HHHHHHHHHHHHHHhhhhc--CCChHHHHHHHHHHHHHHcC-----CCCCHHHHH
Confidence 34667888999999865 5555554 44444421 23467889999999999876 335667788
Q ss_pred HhhCCchhHHHHHHHHHHHHhh
Q 026095 203 AISGVPAKLIVAVEGKIARVMA 224 (243)
Q Consensus 203 ~~sgvpa~lilave~~~~r~~~ 224 (243)
+.+||+-+-|--+-..|.+.|.
T Consensus 70 ~~~~i~~~~i~k~~k~i~~~L~ 91 (95)
T d1vola1 70 AVSRISKKEIGRCFKLILKALE 91 (95)
T ss_dssp TTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHC
Confidence 9999999988887777777654
No 12
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.72 E-value=10 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=26.4
Q ss_pred cccCCccccccccccccCCcceeeccCCCCCCcccCCCCCCCCCCC
Q 026095 36 FLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPICPSCCSSTTST 81 (243)
Q Consensus 36 ~La~rH~RvpLC~~C~~~pa~~~c~~~~~~d~~~LC~~Cd~~~~~~ 81 (243)
++...+.|...|..=+.-+..+||.. |..++|..|...+...
T Consensus 3 P~~~~~~r~~~C~~H~~e~l~~fC~~----C~~~iC~~C~~~~~Hk 44 (71)
T d2djaa1 3 PVPDTHLRGITCLDHENEKVNMYCVS----DDQLICALCKLVGRHR 44 (71)
T ss_dssp CCCCCCSSCCCCSSCSSSCCCEEETT----TTEEECHHHHHTSTTT
T ss_pred CCCccccCCCcCcccCCccceeEcCC----CCceeccccccCCCCC
Confidence 34445666666544333345567765 8899999997655443
No 13
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.93 E-value=12 Score=25.03 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=25.8
Q ss_pred CCccccccCCCceEEecCCccccCccccccc
Q 026095 1 MKRACELCSQEAALHCASDEAFLCFDCDDRV 31 (243)
Q Consensus 1 M~~~Cd~C~~pA~vyC~aD~A~LC~~CDa~v 31 (243)
|+..|.-|+....+|=++-...+|..|...+
T Consensus 6 ~~VkC~~C~n~~ivFsha~t~V~C~~Cg~~L 36 (58)
T d1qxfa_ 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (58)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEeECCCCCCeEEEEecCceEEEccccCCEE
Confidence 4567899998889999999999999997644
Done!